2018-02-02 18:14:51,908 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:14:51,915 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:14:51,916 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:14:37 2018-02-02 18:17:17,177 INFO repeater task os75nb_10pings starting 1.1 seconds late 2018-02-02 18:17:17,285 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:19:37,535 INFO repeater task os75nb_quick starting 1.4 seconds late 2018-02-02 18:19:38,984 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-02-02 18:19:38,984 INFO repeater task os75nb_quick ended after 1.4 seconds 2018-02-02 18:19:38,985 INFO repeater task os75nb_3dayplots starting 2.9 seconds late 2018-02-02 18:19:40,173 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) cannot make 3-day shallow plot Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 345, in '_shallow', cruiseinfo.cruiseid, deltat=0.5/24) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 233, in vecplot ax=ax) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 327, in vecplot raise ValueError('no good positions') ValueError: no good positions /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-02-02 18:19:40,173 INFO repeater task os75nb_3dayplots ended after 1.2 seconds 2018-02-02 18:19:40,174 INFO repeater task os75nb_tsstats starting 4.1 seconds late 2018-02-02 18:19:40,697 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-02-02 18:19:40,697 INFO repeater task os75nb_tsstats ended after 0.5 seconds 2018-02-02 18:19:40,697 INFO repeater task os75nb_beamplots starting 4.6 seconds late 2018-02-02 18:19:41,575 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 18:19:41,576 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-02-02 18:19:41,576 INFO repeater task os75nb_beamplots starting 5.5 seconds late 2018-02-02 18:19:42,460 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 18:19:42,460 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-02-02 18:19:42,460 INFO repeater task posmv_hcorrstats starting 6.3 seconds late 2018-02-02 18:19:43,122 INFO repeater task posmv_hcorrstats ended after 0.7 seconds 2018-02-02 18:19:43,123 INFO repeater task posmv_plotposmv starting 7.0 seconds late 2018-02-02 18:19:44,117 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:19:49,123 INFO repeater task os75nb_lastensq starting 2.1 seconds late 2018-02-02 18:19:50,154 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:19:50,154 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:19:50,155 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:19:50,155 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:19:37 2018-02-02 18:22:40,468 INFO repeater task os75nb_10pings starting 4.4 seconds late 2018-02-02 18:22:40,573 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:24:40,795 INFO repeater task posmv_hcorrstats starting 4.7 seconds late 2018-02-02 18:24:41,418 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 18:24:41,419 INFO repeater task posmv_plotposmv starting 5.3 seconds late 2018-02-02 18:24:42,411 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:24:47,416 INFO repeater task os75nb_lastensq starting 0.4 seconds late 2018-02-02 18:24:48,438 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:24:48,438 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:24:48,438 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:24:48,438 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:24:37 2018-02-02 18:27:58,770 INFO repeater task os75nb_10pings starting 2.7 seconds late 2018-02-02 18:27:58,882 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:29:39,060 INFO repeater task posmv_hcorrstats starting 2.9 seconds late 2018-02-02 18:29:39,702 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 18:29:39,703 INFO repeater task posmv_plotposmv starting 3.6 seconds late 2018-02-02 18:29:40,695 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:29:50,708 INFO repeater task os75nb_lastensq starting 3.7 seconds late 2018-02-02 18:29:51,716 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:29:51,716 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:29:51,717 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:29:51,717 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:29:37 2018-02-02 18:33:17,077 INFO repeater task os75nb_10pings starting 1.0 seconds late 2018-02-02 18:33:17,173 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:34:37,306 INFO repeater task os75nb_quick starting 1.2 seconds late 2018-02-02 18:34:38,749 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-02-02 18:34:38,749 INFO repeater task os75nb_quick ended after 1.4 seconds 2018-02-02 18:34:38,750 INFO repeater task os75nb_3dayplots starting 2.6 seconds late 2018-02-02 18:34:39,991 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) cannot make 3-day shallow plot Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 345, in '_shallow', cruiseinfo.cruiseid, deltat=0.5/24) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 233, in vecplot ax=ax) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 327, in vecplot raise ValueError('no good positions') ValueError: no good positions /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-02-02 18:34:39,992 INFO repeater task os75nb_3dayplots ended after 1.2 seconds 2018-02-02 18:34:39,992 INFO repeater task os75nb_tsstats starting 3.9 seconds late 2018-02-02 18:34:40,529 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-02-02 18:34:40,529 INFO repeater task os75nb_tsstats ended after 0.5 seconds 2018-02-02 18:34:40,529 INFO repeater task os75nb_beamplots starting 4.4 seconds late 2018-02-02 18:34:41,514 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 18:34:41,514 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-02-02 18:34:41,514 INFO repeater task os75nb_beamplots starting 5.4 seconds late 2018-02-02 18:34:42,480 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 18:34:42,480 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-02-02 18:34:42,480 INFO repeater task posmv_hcorrstats starting 6.4 seconds late 2018-02-02 18:34:43,092 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 18:34:43,093 INFO repeater task posmv_plotposmv starting 7.0 seconds late 2018-02-02 18:34:44,077 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:34:49,082 INFO repeater task os75nb_lastensq starting 2.1 seconds late 2018-02-02 18:34:50,144 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:34:50,144 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:34:50,144 INFO repeater task os75nb_lastensq ended after 1.1 seconds 2018-02-02 18:34:50,144 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:34:37 2018-02-02 18:38:40,535 INFO repeater task os75nb_10pings starting 4.4 seconds late 2018-02-02 18:38:40,629 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:39:40,792 INFO repeater task posmv_hcorrstats starting 4.7 seconds late 2018-02-02 18:39:41,411 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 18:39:41,412 INFO repeater task posmv_plotposmv starting 5.3 seconds late 2018-02-02 18:39:42,451 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:39:47,457 INFO repeater task os75nb_lastensq starting 0.5 seconds late 2018-02-02 18:39:48,463 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:39:48,463 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:39:48,463 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:39:48,463 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:39:37 2018-02-02 18:43:58,859 INFO repeater task os75nb_10pings starting 2.7 seconds late 2018-02-02 18:43:58,966 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:44:39,015 INFO repeater task posmv_hcorrstats starting 2.9 seconds late 2018-02-02 18:44:39,640 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 18:44:39,641 INFO repeater task posmv_plotposmv starting 3.5 seconds late 2018-02-02 18:44:40,624 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:44:50,640 INFO repeater task os75nb_lastensq starting 3.6 seconds late 2018-02-02 18:44:51,624 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:44:51,625 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:44:51,625 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:44:51,625 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:44:37 2018-02-02 18:49:17,092 INFO repeater task os75nb_10pings starting 1.0 seconds late 2018-02-02 18:49:17,198 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:49:37,230 INFO repeater task os75nb_quick starting 1.1 seconds late 2018-02-02 18:49:38,694 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-02-02 18:49:38,694 INFO repeater task os75nb_quick ended after 1.5 seconds 2018-02-02 18:49:38,694 INFO repeater task os75nb_3dayplots starting 2.6 seconds late 2018-02-02 18:49:39,870 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) cannot make 3-day shallow plot Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 345, in '_shallow', cruiseinfo.cruiseid, deltat=0.5/24) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 233, in vecplot ax=ax) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 327, in vecplot raise ValueError('no good positions') ValueError: no good positions /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-02-02 18:49:39,870 INFO repeater task os75nb_3dayplots ended after 1.2 seconds 2018-02-02 18:49:39,871 INFO repeater task os75nb_tsstats starting 3.8 seconds late 2018-02-02 18:49:40,399 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-02-02 18:49:40,400 INFO repeater task os75nb_tsstats ended after 0.5 seconds 2018-02-02 18:49:40,400 INFO repeater task os75nb_beamplots starting 4.3 seconds late 2018-02-02 18:49:41,366 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 18:49:41,366 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-02-02 18:49:41,366 INFO repeater task os75nb_beamplots starting 5.2 seconds late 2018-02-02 18:49:42,305 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 18:49:42,306 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-02-02 18:49:42,306 INFO repeater task posmv_hcorrstats starting 6.2 seconds late 2018-02-02 18:49:42,945 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 18:49:42,945 INFO repeater task posmv_plotposmv starting 6.8 seconds late 2018-02-02 18:49:43,972 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:49:48,978 INFO repeater task os75nb_lastensq starting 2.0 seconds late 2018-02-02 18:49:50,004 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:49:50,005 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:49:50,005 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:49:50,005 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:49:37 2018-02-02 18:54:40,501 INFO repeater task os75nb_10pings starting 4.4 seconds late 2018-02-02 18:54:40,613 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 18:54:40,614 INFO repeater task posmv_hcorrstats starting 4.5 seconds late 2018-02-02 18:54:41,237 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 18:54:41,237 INFO repeater task posmv_plotposmv starting 5.1 seconds late 2018-02-02 18:54:42,236 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 18:54:47,241 INFO repeater task os75nb_lastensq starting 0.2 seconds late 2018-02-02 18:54:48,281 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:54:48,282 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:54:48,282 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:54:48,282 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:54:37 2018-02-02 18:59:38,793 INFO repeater task posmv_hcorrstats starting 2.7 seconds late 2018-02-02 18:59:39,447 INFO repeater task posmv_hcorrstats ended after 0.7 seconds 2018-02-02 18:59:39,447 INFO repeater task posmv_plotposmv starting 3.3 seconds late 2018-02-02 18:59:40,525 INFO repeater task posmv_plotposmv ended after 1.1 seconds 2018-02-02 18:59:50,541 INFO repeater task os75nb_lastensq starting 3.5 seconds late 2018-02-02 18:59:51,549 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 18:59:51,549 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 18:59:51,549 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 18:59:51,549 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 18:59:37 2018-02-02 18:59:56,556 INFO repeater task os75nb_10pings starting 0.4 seconds late 2018-02-02 18:59:56,662 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 19:04:37,122 INFO repeater task os75nb_quick starting 1.0 seconds late 2018-02-02 19:04:38,550 INFO repeater task os75nb_quick output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) 2018-02-02 19:04:38,550 INFO repeater task os75nb_quick ended after 1.4 seconds 2018-02-02 19:04:38,551 INFO repeater task os75nb_3dayplots starting 2.4 seconds late 2018-02-02 19:04:39,747 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) cannot make 3-day shallow plot Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 345, in '_shallow', cruiseinfo.cruiseid, deltat=0.5/24) File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 233, in vecplot ax=ax) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/dataplotter.py", line 327, in vecplot raise ValueError('no good positions') ValueError: no good positions /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png cannot make index.html Traceback (most recent call last): File "/usr/local/currents/bin/run_3dayplots_mpl.py", line 373, in verbose = False) File "/usr/local/lib/python2.7/dist-packages/pycurrents/plot/html_table.py", line 260, in __init__ raise RuntimeError("No files found matching %s" % globstr) RuntimeError: No files found matching *_shallow.png zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked zgrid failed zgrid failed: returning all values masked 2018-02-02 19:04:39,747 INFO repeater task os75nb_3dayplots ended after 1.2 seconds 2018-02-02 19:04:39,747 INFO repeater task os75nb_tsstats starting 3.6 seconds late 2018-02-02 19:04:40,258 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2018-02-02 19:04:40,258 INFO repeater task os75nb_tsstats ended after 0.5 seconds 2018-02-02 19:04:40,259 INFO repeater task os75nb_beamplots starting 4.1 seconds late 2018-02-02 19:04:41,205 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 19:04:41,205 INFO repeater task os75nb_beamplots ended after 0.9 seconds 2018-02-02 19:04:41,206 INFO repeater task os75nb_beamplots starting 5.1 seconds late 2018-02-02 19:04:42,180 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /usr/local/currents/bin 2018-02-02 19:04:42,180 INFO repeater task os75nb_beamplots ended after 1.0 seconds 2018-02-02 19:04:42,180 INFO repeater task posmv_hcorrstats starting 6.1 seconds late 2018-02-02 19:04:42,806 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 19:04:42,807 INFO repeater task posmv_plotposmv starting 6.7 seconds late 2018-02-02 19:04:43,858 INFO repeater task posmv_plotposmv ended after 1.1 seconds 2018-02-02 19:04:48,864 INFO repeater task os75nb_lastensq starting 1.9 seconds late 2018-02-02 19:04:49,864 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 19:04:49,864 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 19:04:49,864 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 19:04:49,864 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 19:04:37 2018-02-02 19:05:19,920 INFO repeater task os75nb_10pings starting 3.8 seconds late 2018-02-02 19:05:20,032 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 19:09:40,502 INFO repeater task posmv_hcorrstats starting 4.4 seconds late 2018-02-02 19:09:41,138 INFO repeater task posmv_hcorrstats ended after 0.6 seconds 2018-02-02 19:09:41,139 INFO repeater task posmv_plotposmv starting 5.0 seconds late 2018-02-02 19:09:42,139 INFO repeater task posmv_plotposmv ended after 1.0 seconds 2018-02-02 19:09:47,142 INFO repeater task os75nb_lastensq starting 0.1 seconds late 2018-02-02 19:09:48,158 ERROR repeater task os75nb_lastensq returncode 24 2018-02-02 19:09:48,158 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:79: RuntimeWarning: Degrees of freedom <= 0 for slice warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") In body of run_lastensq.py Traceback (most recent call last): File "/usr/local/currents/bin/run_lastensq.py", line 400, in E(plotname = 'kt_vecprof', zbin=4) #colorscheme='day' File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 190, in __call__ self.fig5 = self.plot_vecprof_ktvec(zbin=zbin, vcolor=vcolor) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 451, in plot_vecprof_ktvec self.plot_ktvec2(fig=fig, ax1=ax[1], xtext=.75, textsize=18, ytextshift=.15) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/ensplot.py", line 775, in plot_ktvec2 self.ktdir_data.u = u UnboundLocalError: local variable 'u' referenced before assignment 2018-02-02 19:09:48,158 INFO repeater task os75nb_lastensq ended after 1.0 seconds 2018-02-02 19:09:48,158 INFO repeater task os75nb_lastensq: Time from /home/data/SH1800/proc/os75nb/load/wrote_ens_time: 2018/02/02 19:09:37 2018-02-02 19:10:38,232 INFO repeater task os75nb_10pings starting 2.1 seconds late 2018-02-02 19:10:38,335 INFO repeater task os75nb_10pings ended after 0.1 seconds 2018-02-02 19:13:49,613 INFO Translate translate exiting, gps /home/data/SH1800/rbin/posmv 2018-02-02 19:13:49,621 INFO Translate translate exiting, gps /home/data/SH1800/rbin/gpsnav 2018-02-02 19:13:49,631 INFO Translate translate exiting, pmv /home/data/SH1800/rbin/posmv 2018-02-02 19:13:49,657 INFO Translate translate exiting, hdg /home/data/SH1800/rbin/gyro 2018-02-02 19:13:53,651 INFO root cleanup_figs not_logging 2018-02-02 19:13:53,677 INFO root Exiting DAS_while_logging.py