http://lod.bco-dmo.org/id/dataset/781917
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2019-11-18
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Clownfish collection log including such as depth, species, and size from coastal reefs of Ormoc Bay, Leyte, Philippines, 2012-2018
2019-11-06
publication
2019-11-06
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-10-28
publication
https://doi.org/10.26008/1912/bco-dmo.781917.1
Malin Pinsky
Rutgers University
principalInvestigator
Michelle Stuart
Rutgers University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
documentDigital
Cite this dataset as: Pinsky, M., Stuart, M. (2019) Clownfish collection log including such as depth, species, and size from coastal reefs of Ormoc Bay, Leyte, Philippines, 2012-2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-11-06 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.781917.1 [access date]
clownfish log Dataset Description: <p>Clownfish collection log from the west coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87528), 2012-2018.</p>
<p>For species codes, see:&nbsp;<a href="https://www.bco-dmo.org/dataset/785633">https://www.bco-dmo.org/dataset/785633</a></p> Acquisition Description: <p>Anemone surveyor:<br />
-&nbsp;searches adjacent area for anemone tag (anemone could have moved a few feet since last encounter)<br />
- records time, species, size of anemone, tag number if present<br />
- watches anemone and counts number of fish and estimate sizes (same procedure regardless of species)<br />
- records species of fish, estimate sizes<br />
- adds tag after the fact if one was missing or if there was only one zip tie tag (old system tag)<br />
- flags anemone with flagging tape that it is ready to be hunted if APCL were present.</p>
<p>Fish catcher:<br />
-&nbsp;waits for flagging tape to indicate anemone is ready for fish capture, ok to chase fish if they fled the area<br />
- catches all fish of desired size range and places in holding vessel adjacent to anemone<br />
- can move on to next anemone if anemone surveyor has flagged it</p>
<p>Data entry was made with Excel or Google sheets, depending on the internet connection.<br />
Data cleaning was performed in R using the tidyverse package.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1430218 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1430218
completed
Malin Pinsky
Rutgers University
848-932-8242
14 College Farm Rd.
New Brunswick
NJ
08901
USA
malin.pinsky@rutgers.edu
pointOfContact
Michelle Stuart
Rutgers University
(848) 932-5515
ENR 168 14 College Farm Rd
New Brunswick
NJ
08901
USA
michelle.stuart@rutgers.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
fish_table_id
anem_table_id
fish_spp
size
fin_id
sample_id
color
recap
tag_id
fish_notes
fish_collector
fish_correction
fish_corr_date
fish_corr_editor
fish_corr_message
fish_obs_time
sex
Biomark 601 PIT tag reader
theme
None, User defined
event
taxon_code
length
sample identification
no standard parameter
flag
tagid
comments
person name
date_local
time_local
sex
featureType
BCO-DMO Standard Parameters
tracking tag
instrument
BCO-DMO Standard Instruments
SCUBA_Pinsky_Leyte_January2015
SCUBA_Pinsky_Leyte_June2014
SCUBA_Pinsky_Leyte_June2015
SCUBA_Pinsky_Leyte_May2016
service
Deployment Activity
West coast of Leyte, Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (10.676940, 124.799170)
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Mega-typhoon impacts on the metapopulation resilience of coral reef fishes
https://www.bco-dmo.org/project/554706
RAPID: Mega-typhoon impacts on the metapopulation resilience of coral reef fishes
<p><em>Description from NSF award abstract:</em><br />
When Typhoon Haiyan hit the Philippines it had sustained winds of 305 to 315 kph and was the strongest storm ever to make landfall. Storms are one of the most important disturbances to coral reef ecosystems. Previous research has primarily emphasized that habitat recovery is important for the recovery of reef fish communities after disturbance. We understand little, however, about the role of larval dispersal in mediating species responses to disturbance. Reef fish function as metapopulations connected by larval dispersal among reefs, and larval connectivity is therefore a critical process for their dynamics. A field site directly in Typhoon Haiyan's path provides an ideal opportunity to address the role of larval dispersal during recovery. Over the course of four field seasons (2008 to 2013), nearly two thousand clownfish were surveyed along 20km of coastline. Clownfish possess the same basic life history as most reef fish (sedentary adults and pelagic larvae), but are sufficiently rare and visible that genetic parentage methods can be used to follow larval dispersal. This study site is therefore a unique location in which to understand the metapopulation impacts of a massive storm. This project will focus on three hypotheses: 1) Habitat destruction determines the short-term impacts of storms disturbance, 2) Metapopulation processes shape recolonization after disturbance, and 3) Disturbance allows rare competitors to increase in abundance. The project will address these questions with a combination of fixed and random transects to assess reef habitat and reef fish abundance and diversity, as well as detailed, spatially explicit surveys of anemones and clownfish. Genetic mark-recapture and parentage methods with yellowtail clownfish will pinpoint the origin of new recruits that recolonize the reef post-typhoon.</p>
Reef Fish Resilience
largerWorkCitation
project
eng; USA
biota
oceans
West coast of Leyte, Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (10.676940, 124.799170)
124.555
124.8083
10.6299
11.0165
2012-05-05
2018-04-10
West coast of Leyte Island, Visayas, Philippines
0
BCO-DMO catalogue of parameters from Clownfish collection log including such as depth, species, and size from coastal reefs of Ormoc Bay, Leyte, Philippines, 2012-2018
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/781954.rdf
Name: fish_table_id
Units: unitless
Description: unique identifier of fish observation
http://lod.bco-dmo.org/id/dataset-parameter/781955.rdf
Name: anem_table_id
Units: unitless
Description: unique identifier of observation event (whole number): links to the anemones table
http://lod.bco-dmo.org/id/dataset-parameter/781956.rdf
Name: fish_spp
Units: unitless
Description: species code of fish; can be APCL = Amphiprion clarkii; APOC = A. ocellaris; APPE = A. periderion; APSA = A. sandaracinos; APFR = A. frenatus or A. melanopus; APPO = A. polymnus; APTH = A. theillei; PRBI = Premnas biaculeatus
http://lod.bco-dmo.org/id/dataset-parameter/781957.rdf
Name: size
Units: centimeters
Description: size of the fish - either estimated by eye or measured with calipers
http://lod.bco-dmo.org/id/dataset-parameter/781958.rdf
Name: fin_id
Units: unitless
Description: tissue sample id: series begins with 1 at the beginning of the field season; reflects the number of tissue samples collected and the order except for 2015_05 field season where the last 6 digits of the pit tag were used for fish that were tagged and clipped.
http://lod.bco-dmo.org/id/dataset-parameter/781959.rdf
Name: sample_id
Units: unitless
Description: tissue sample id including species of fish and year collected
http://lod.bco-dmo.org/id/dataset-parameter/781960.rdf
Name: color
Units: unitless
Description: tail color code: can be O = a tail containing any orange color; YP = a tail that is yellow and pointed; YR = a tail that is yellow and rounded; W = a tail that contains white; B = tail that contains black; BW = a tail that is black and white
http://lod.bco-dmo.org/id/dataset-parameter/781961.rdf
Name: recap
Units: unitless
Description: indicates if the fish had a PIT tag when scanned: can by Y if tag was present or N if tag was not present; fish have only been scanned since 2015; previous years are null. The fish captured during Patrick's pilot study are only listed once and the recapture/size info is in their notes because there are not dive/anem_table_ids for these recapture events.
http://lod.bco-dmo.org/id/dataset-parameter/781962.rdf
Name: tag_id
Units: unitless
Description: tag number (including city) of PIT tag injected into fish
http://lod.bco-dmo.org/id/dataset-parameter/781963.rdf
Name: fish_notes
Units: unitless
Description: any notes pertaining to this fish
http://lod.bco-dmo.org/id/dataset-parameter/781964.rdf
Name: fish_collector
Units: unitless
Description: intials of person who filled out data sheet for this observation
http://lod.bco-dmo.org/id/dataset-parameter/781965.rdf
Name: fish_correction
Units: unitless
Description: Y indicates that a correction has been made to the data since data entry from the data sheet
http://lod.bco-dmo.org/id/dataset-parameter/781966.rdf
Name: fish_corr_date
Units: unitless
Description: the date of the most recent correction
http://lod.bco-dmo.org/id/dataset-parameter/781967.rdf
Name: fish_corr_editor
Units: unitless
Description: the editor of the most recent correction
http://lod.bco-dmo.org/id/dataset-parameter/781968.rdf
Name: fish_corr_message
Units: unitless
Description: comments on which field was changed from what old value to what new value and reason and based on what evidence. If another correction was already present then amend the message to include the date and correction editor of previous corrections
http://lod.bco-dmo.org/id/dataset-parameter/781969.rdf
Name: fish_obs_time
Units: unitless
Description: the time that the fish photo was taken or the fish was scanned with the pit scanner; recorded in the Asia/Manila time zone
http://lod.bco-dmo.org/id/dataset-parameter/781970.rdf
Name: sex
Units: unitless
Description: the sex of the fish with possible values of M = male F = female and J = juvenile
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://www.bco-dmo.org/dataset/781917/data/download
download
onLine
dataset
<p>Anemone surveyor:<br />
-&nbsp;searches adjacent area for anemone tag (anemone could have moved a few feet since last encounter)<br />
- records time, species, size of anemone, tag number if present<br />
- watches anemone and counts number of fish and estimate sizes (same procedure regardless of species)<br />
- records species of fish, estimate sizes<br />
- adds tag after the fact if one was missing or if there was only one zip tie tag (old system tag)<br />
- flags anemone with flagging tape that it is ready to be hunted if APCL were present.</p>
<p>Fish catcher:<br />
-&nbsp;waits for flagging tape to indicate anemone is ready for fish capture, ok to chase fish if they fled the area<br />
- catches all fish of desired size range and places in holding vessel adjacent to anemone<br />
- can move on to next anemone if anemone surveyor has flagged it</p>
<p>Data entry was made with Excel or Google sheets, depending on the internet connection.<br />
Data cleaning was performed in R using the tidyverse package.</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Data Processing:</strong><br />
- refomatted 'fish_corr_date column to ISO_Date format (yyyy-mm-dd)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Biomark 601 PIT tag reader
Biomark 601 PIT tag reader
PI Supplied Instrument Name: Biomark 601 PIT tag reader PI Supplied Instrument Description:Passive Integrated Transponder (PIT) tags help scientists track individual organisms by providing a reliable lifetime 'barcode' for an individual animal. PIT tags are dormant until activated; they therefore do not require any internal source of power throughout their lifespan.To activate the tag, a low-frequency radio signal is emitted by a scanning device that generates a close-range electromagnetic field. The tag then sends a unique alpha-numeric code back to the reader (Keck 1994). Scanners are available as handheld, portable, battery-powered models and as stationary, automated models that are usually used for automated scanning. Instrument Name: tracking tag Instrument Short Name: Instrument Description: Devices attached to living organisms with the purpose of determining the location of those organisms as a function of time after tagging and release.
Deployment: SCUBA_Pinsky_Leyte_January2015
SCUBA_Pinsky_Leyte_January2015
SCUBA Pinsky Leyte
SCUBA_Pinsky_Leyte_January2015
Malin Pinsky
Rutgers University
Deployment: SCUBA_Pinsky_Leyte_June2014
SCUBA_Pinsky_Leyte_June2014
SCUBA Pinsky Leyte
SCUBA_Pinsky_Leyte_June2014
Malin Pinsky
Rutgers University
Deployment: SCUBA_Pinsky_Leyte_June2015
SCUBA_Pinsky_Leyte_June2015
SCUBA Pinsky Leyte
SCUBA_Pinsky_Leyte_June2015
Malin Pinsky
Rutgers University
Deployment: SCUBA_Pinsky_Leyte_May2016
SCUBA_Pinsky_Leyte_May2016
SCUBA Pinsky Leyte
SCUBA_Pinsky_Leyte_May2016
Malin Pinsky
Rutgers University
SCUBA Pinsky Leyte