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Journal for accession number:  0216077
Created on:                    2020-08-04 17:05:51 UTC
By:                            Rebecca Wenker, NCEI

Source: Dr. Anderson Mayfield, US DOC; NOAA; OAR; Atlantic Oceanographic and
Meteorological Laboratory (NOAA Atlantic Oceanographic and Meteorological
Laboratory - AOML), submitted data and metadata to NCEI in submission
package BELJ6L via Send2NCEI (S2N).

Actions: An automated procedure copied the files from the submission package
into this accession. A metadata record in ISO 19115-2 XML format was also
generated from the information provided by the submitter and was copied into
this accession. Additional files were shared via google drive by the submitter
and copied into this accession, including: SHVTS-A.mzid, SHVTS-B.mzid,
SHVTS-B.raw, and SHVTS_protein_seqs.fa. Revised files 
Mayfield_online_supplemental_data_file.xlsx and 
Mayfield_Microorganisms_2020_supplemental_material.pdf were sent via email 
attachment and replaced the original files submitted via S2N in the data/0-data/
directory.

Files:

about/ 
This directory contains files created by NCEI staff and processing, including
'negotiable' information between NCEI staff and the data provider.

BELJ6L-confirmation_email.txt -
  Email from the Send2NCEI web application to Dr. Anderson Mayfield, US DOC;
  NOAA; OAR; Atlantic Oceanographic and Meteorological Laboratory (NOAA
  Atlantic Oceanographic and Meteorological Laboratory - AOML), confirming
  that NCEI has received the submission information package.

BELJ6L-report.txt -
  Automatically generated report containing information about the automated
  processing of this accession and provider-specific metadata. This report
  is intended for use by the Data Content Manager assigned to this
  accession.

0-email.txt - 
  Email from the data provider giving the google drive link containing additional
  data files to include in the accession: SHVTS-A.mzid, SHVTS-B.mzid, SHVTS-B.raw,
  and SHVTS_protein_seqs.fa. He also attached an updated version of 
  Mayfield_online_supplemental_data_file.xlsx to be included in the accession.
    
1-email.txt - 
  Email from the data provider containing an updated version of the 
  Mayfield_Microorganisms_2020-supplemental_material.pdf file. 
  
0216077_lonlat.txt - 
  Contains sample locations for these data. Each row contains the geographical
  position where these data were collected (longitude in the left column and latitude
  in the right column, both in degrees). NCEI may have corrected geographic positions
  that seemed to be in error when generating this file. However, NCEI did not change 
  the original data files under the directory data/0-data/.

0216077_map.jpg - 
  Sample location map for these data.

data/0-data/
This directory contains files in their original format as downloaded to NCEI.

BELJ6L-ISO-19115-2.xml -
  This metadata file was automatically generated as a part of the Send 2 NCEI
  (S2N) submission process.

Mayfield_Microorganisms_2020_supplemental_material.pdf - 
  Supplemental methods and material for the manuscript associated with the data in this
  accession, which is listed as "Proteomic Signatures of Corals from Thermodynamic Reefs"
  in the documentation section. It contains the specifics of the proteomic analysis done
  in the study. 

Mayfield_online_supplemental_data_file.xlsx -
  This is a tab-delineated file that describes the protein sequences and concentrations
  found in the coral samples analyzed in iTRAQ batches A and B. This file also
  provides metadata for individual coral samples (sample ID tab), coordinates for
  the sampling sites (site info tab), a data dictionary defining column headers 
  and their contents (terms tab), and information about the data files contained 
  in this archive package (submission details tab). 

SHVTS_protein_seqs.fa - 
  This file contains the conceptually translated Seriatopora hystrix-Cladocopium 
  transcriptome, against which the coral samples' mass spectrometry peak data were
  queried against during analysis.
  
SHVTS-A.mzid - 
  This file contains mass spectrometry results for iTRAQ batch A in an open-access,
  MZID data file format. 

SHVTS-A.mzML - 
  This file contains peak data from the mass spectrometer for iTRAQ batch A in an
  open-access, MZML data file format. 

SHVTS-A.raw - 
  This file contains peak data from the mass spectrometer for iTRAQ batch A in a
  RAW data file format. Access to this file is restricted to those with Thermo-Fisher
  Scientific's Proteome Discoverer (or equivalent).

SHVTS-B.mzid -
  This file contains mass spectrometry results for iTRAQ batch B in an open-access,
  MZID data file format.

SHVTS-B.mzML - 
  This file contains peak data from the mass spectrometer for iTRAQ batch B in an
  open-access, MZML data file format.
  
SHVTS-B.raw -
  This file contains peak data from the mass spectrometer for iTRAQ batch B in a
  RAW data file format. Access to this file is restricted to those with Thermo-Fisher
  Scientific's Proteome Discoverer (or equivalent).
  
Removed files:

data/0-data/Mayfield_2020_PDF_proofs.pdf
  
data/1-data/
This directory contains files that were converted by NCEI from their originally
submitted format under the 0-data/ directory to an archival format. 

*.ods - 
  Open document spreadsheet (ODS) that NCEI converted from the Microsoft Excel file
  in data/0-data/.