2018-05-22 03:46:52,831 INFO     quick_adcp   importing numpy version 1.11.0
2018-05-22 03:46:52,844 INFO     quick_adcp   importing matplotlib version 1.5.1
2018-05-22 03:46:53,001 INFO     quick_adcp   =====================================================
2018-05-22 03:46:53,001 INFO     quick_adcp   =====================================================
2018-05-22 03:46:53,001 INFO     quick_adcp   command line was: /usr/local/currents/bin/run_quick.py -d wh300
2018-05-22 03:46:53,001 INFO     quick_adcp   cwd is /mnt/md0/data/SR1806/proc/wh300
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2018-05-22 03:46:53,158 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:53,158 INFO     quick_adcp   step 1: set up files in "edit" directory 

2018-05-22 03:46:53,159 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:53,159 INFO     quick_adcp   step 2: scan files for time range

2018-05-22 03:46:53,480 INFO     quick_adcp   looking for database with adcpdb/a_sr*.blk
2018-05-22 03:46:53,481 INFO     quick_adcp   database found: listing blocks
2018-05-22 03:46:53,540 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:53,540 INFO     quick_adcp   step 3: generate averaged data...
2018-05-22 03:46:53,579 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:53,579 INFO     quick_adcp   step 4: load averaged data (to database)
2018-05-22 03:46:53,627 INFO     quick_adcp   database time range:
2018-05-22 03:46:53,628 INFO     quick_adcp   2018/04/21  23:30:37 to 2018/05/22  03:45:51
2018-05-22 03:46:53,628 INFO     quick_adcp   (110.979595 to 141.156840)
2018-05-22 03:46:53,677 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:53,677 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2018-05-22 03:46:53,678 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:53,678 INFO     quick_adcp   step 6: run setflags?

2018-05-22 03:46:53,784 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:53,784 INFO     quick_adcp   step 7: get navigation

2018-05-22 03:46:54,474 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:54,474 INFO     quick_adcp   step 8: list heading

2018-05-22 03:46:54,551 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:54,551 INFO     quick_adcp   step 9: plot heading correction

2018-05-22 03:46:55,275 INFO     quick_adcp   
-------------------------
2018-05-22 03:46:55,276 INFO     quick_adcp   ---- running navsteps ---
2018-05-22 03:46:55,276 INFO     quick_adcp   -------------------------
2018-05-22 03:46:55,276 INFO     quick_adcp   step 10: nav steps: run adcpsect
2018-05-22 03:46:55,276 INFO     quick_adcp   navstep 1
2018-05-22 03:46:55,433 INFO     quick_adcp   -------------------------
2018-05-22 03:46:55,433 INFO     quick_adcp   step 11: nav steps: run refabs
2018-05-22 03:46:55,433 INFO     quick_adcp   navstep 2
2018-05-22 03:46:55,518 INFO     quick_adcp   -------------------------
2018-05-22 03:46:55,518 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2018-05-22 03:46:55,518 INFO     quick_adcp   navstep 3
2018-05-22 03:46:56,138 INFO     quick_adcp   -------------------------
2018-05-22 03:46:56,138 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2018-05-22 03:46:56,138 INFO     quick_adcp   navstep 4
2018-05-22 03:46:56,929 INFO     quick_adcp   -------------------------
2018-05-22 03:46:56,929 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2018-05-22 03:46:56,929 INFO     quick_adcp   navstep 5
2018-05-22 03:46:57,491 INFO     quick_adcp   -------------------------
2018-05-22 03:46:57,491 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2018-05-22 03:46:57,491 INFO     quick_adcp   navstep 6
2018-05-22 03:46:58,409 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:58,409 INFO     quick_adcp   step 10: find profile flags 

2018-05-22 03:46:59,009 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:59,009 INFO     quick_adcp   step 11: apply editing 

2018-05-22 03:46:59,161 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:46:59,161 INFO     quick_adcp   step 12: run calibration steps 

2018-05-22 03:47:00,517 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:47:00,517 INFO     quick_adcp   step 13: extract and plot temperature 

2018-05-22 03:47:00,982 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:47:00,982 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2018-05-22 03:47:01,380 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:47:01,380 INFO     quick_adcp   step 15: extract matlab "allbins" 

2018-05-22 03:47:03,550 INFO     quick_adcp   ---------------------------------------------
2018-05-22 03:47:03,550 INFO     quick_adcp   writing "cruise_info.txt"