2018-02-23 23:35:01,092 INFO     quick_adcp   importing numpy version 1.11.0
2018-02-23 23:35:01,104 INFO     quick_adcp   importing matplotlib version 1.5.1
2018-02-23 23:35:01,258 INFO     quick_adcp   =====================================================
2018-02-23 23:35:01,258 INFO     quick_adcp   =====================================================
2018-02-23 23:35:01,258 INFO     quick_adcp   command line was: /usr/local/currents/bin/run_quick.py -d os150nb
2018-02-23 23:35:01,258 INFO     quick_adcp   cwd is /mnt/md0/data/SR1803/proc/os150nb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2018-02-23 23:35:01,260 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,260 INFO     quick_adcp   step 1: set up files in "edit" directory 

2018-02-23 23:35:01,260 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,260 INFO     quick_adcp   step 2: scan files for time range

2018-02-23 23:35:01,270 INFO     quick_adcp   looking for database with adcpdb/a_sr*.blk
2018-02-23 23:35:01,270 INFO     quick_adcp   database found: listing blocks
2018-02-23 23:35:01,277 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,277 INFO     quick_adcp   step 3: generate averaged data...
2018-02-23 23:35:01,289 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,289 INFO     quick_adcp   step 4: load averaged data (to database)
2018-02-23 23:35:01,323 INFO     quick_adcp   database time range:
2018-02-23 23:35:01,323 INFO     quick_adcp   2018/02/23  02:34:31 to 2018/02/23  23:30:21
2018-02-23 23:35:01,323 INFO     quick_adcp   (53.107303 to 53.979410)
2018-02-23 23:35:01,327 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,328 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2018-02-23 23:35:01,328 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,328 INFO     quick_adcp   step 6: run setflags?

2018-02-23 23:35:01,333 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,333 INFO     quick_adcp   step 7: get navigation

2018-02-23 23:35:01,556 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,556 INFO     quick_adcp   step 8: list heading

2018-02-23 23:35:01,561 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:01,561 INFO     quick_adcp   step 9: plot heading correction

2018-02-23 23:35:01,892 INFO     quick_adcp   
-------------------------
2018-02-23 23:35:01,892 INFO     quick_adcp   ---- running navsteps ---
2018-02-23 23:35:01,892 INFO     quick_adcp   -------------------------
2018-02-23 23:35:01,893 INFO     quick_adcp   step 10: nav steps: run adcpsect
2018-02-23 23:35:01,893 INFO     quick_adcp   navstep 1
2018-02-23 23:35:01,905 INFO     quick_adcp   -------------------------
2018-02-23 23:35:01,905 INFO     quick_adcp   step 11: nav steps: run refabs
2018-02-23 23:35:01,905 INFO     quick_adcp   navstep 2
2018-02-23 23:35:01,911 INFO     quick_adcp   -------------------------
2018-02-23 23:35:01,911 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2018-02-23 23:35:01,911 INFO     quick_adcp   navstep 3
2018-02-23 23:35:01,923 INFO     quick_adcp   -------------------------
2018-02-23 23:35:01,923 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2018-02-23 23:35:01,924 INFO     quick_adcp   navstep 4
2018-02-23 23:35:01,942 INFO     quick_adcp   -------------------------
2018-02-23 23:35:01,942 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2018-02-23 23:35:01,942 INFO     quick_adcp   navstep 5
2018-02-23 23:35:02,132 INFO     quick_adcp   -------------------------
2018-02-23 23:35:02,132 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2018-02-23 23:35:02,132 INFO     quick_adcp   navstep 6
2018-02-23 23:35:02,442 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:02,442 INFO     quick_adcp   step 10: find profile flags 

2018-02-23 23:35:02,511 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:02,511 INFO     quick_adcp   step 11: apply editing 

2018-02-23 23:35:02,525 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:02,525 INFO     quick_adcp   step 12: run calibration steps 

2018-02-23 23:35:03,220 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:03,220 INFO     quick_adcp   step 13: extract and plot temperature 

2018-02-23 23:35:03,373 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:03,373 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2018-02-23 23:35:03,468 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:03,469 INFO     quick_adcp   step 15: extract matlab "allbins" 

2018-02-23 23:35:03,506 INFO     quick_adcp   ---------------------------------------------
2018-02-23 23:35:03,506 INFO     quick_adcp   writing "cruise_info.txt"