2018-03-10 01:28:55,697 INFO     quick_adcp   importing numpy version 1.11.0
2018-03-10 01:28:55,715 INFO     quick_adcp   importing matplotlib version 1.5.1
2018-03-10 01:28:56,037 INFO     quick_adcp   =====================================================
2018-03-10 01:28:56,037 INFO     quick_adcp   =====================================================
2018-03-10 01:28:56,037 INFO     quick_adcp   command line was: /usr/local/currents/bin/run_quick.py -d os150nb
2018-03-10 01:28:56,038 INFO     quick_adcp   cwd is /home/data/SKQ201805T/proc/os150nb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2018-03-10 01:28:56,043 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,043 INFO     quick_adcp   step 1: set up files in "edit" directory 

2018-03-10 01:28:56,044 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,044 INFO     quick_adcp   step 2: scan files for time range

2018-03-10 01:28:56,092 INFO     quick_adcp   looking for database with adcpdb/a_skq*.blk
2018-03-10 01:28:56,092 INFO     quick_adcp   database found: listing blocks
2018-03-10 01:28:56,110 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,110 INFO     quick_adcp   step 3: generate averaged data...
2018-03-10 01:28:56,145 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,145 INFO     quick_adcp   step 4: load averaged data (to database)
2018-03-10 01:28:56,209 INFO     quick_adcp   database time range:
2018-03-10 01:28:56,209 INFO     quick_adcp   2018/03/06  23:38:06 to 2018/03/10  01:26:21
2018-03-10 01:28:56,210 INFO     quick_adcp   (64.984792 to 68.059965)
2018-03-10 01:28:56,222 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,223 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2018-03-10 01:28:56,223 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,223 INFO     quick_adcp   step 6: run setflags?

2018-03-10 01:28:56,241 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,241 INFO     quick_adcp   step 7: get navigation

2018-03-10 01:28:56,691 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,691 INFO     quick_adcp   step 8: list heading

2018-03-10 01:28:56,705 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:56,705 INFO     quick_adcp   step 9: plot heading correction

2018-03-10 01:28:57,522 INFO     quick_adcp   
-------------------------
2018-03-10 01:28:57,522 INFO     quick_adcp   ---- running navsteps ---
2018-03-10 01:28:57,522 INFO     quick_adcp   -------------------------
2018-03-10 01:28:57,522 INFO     quick_adcp   step 10: nav steps: run adcpsect
2018-03-10 01:28:57,522 INFO     quick_adcp   navstep 1
2018-03-10 01:28:57,544 INFO     quick_adcp   -------------------------
2018-03-10 01:28:57,544 INFO     quick_adcp   step 11: nav steps: run refabs
2018-03-10 01:28:57,544 INFO     quick_adcp   navstep 2
2018-03-10 01:28:57,562 INFO     quick_adcp   -------------------------
2018-03-10 01:28:57,562 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2018-03-10 01:28:57,562 INFO     quick_adcp   navstep 3
2018-03-10 01:28:57,610 INFO     quick_adcp   -------------------------
2018-03-10 01:28:57,611 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2018-03-10 01:28:57,611 INFO     quick_adcp   navstep 4
2018-03-10 01:28:57,729 INFO     quick_adcp   -------------------------
2018-03-10 01:28:57,730 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2018-03-10 01:28:57,730 INFO     quick_adcp   navstep 5
2018-03-10 01:28:58,131 INFO     quick_adcp   -------------------------
2018-03-10 01:28:58,131 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2018-03-10 01:28:58,131 INFO     quick_adcp   navstep 6
2018-03-10 01:28:58,920 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:58,920 INFO     quick_adcp   step 10: find profile flags 

2018-03-10 01:28:58,986 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:58,986 INFO     quick_adcp   step 11: apply editing 

2018-03-10 01:28:59,030 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:59,030 INFO     quick_adcp   step 12: run calibration steps 

2018-03-10 01:28:59,147 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:59,147 INFO     quick_adcp   step 13: extract and plot temperature 

2018-03-10 01:28:59,443 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:59,443 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2018-03-10 01:28:59,633 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:59,633 INFO     quick_adcp   step 15: extract matlab "allbins" 

2018-03-10 01:28:59,784 INFO     quick_adcp   ---------------------------------------------
2018-03-10 01:28:59,784 INFO     quick_adcp   writing "cruise_info.txt"