2017-06-14 00:47:20,490 DEBUG root about to write control file parameters to --yearbase 2017 --cruisename MGL1704 --configtype python --sonar os75nb --dbname a_mgl --datatype uhdas --cfgpath /home/data/MGL1704/proc/os75nb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 1000 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2017-06-14 00:47:20,490 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb 2017-06-14 00:47:20,492 DEBUG quick_adcp progdir = /home/currents/programs 2017-06-14 00:47:20,492 DEBUG quick_adcp binos = lnx64 2017-06-14 00:47:20,493 DEBUG quick_setup found cruise_info.hcorr (seapath, hdg, 0) 2017-06-14 00:47:20,495 INFO quick_adcp importing numpy 2017-06-14 00:47:20,511 INFO quick_adcp importing matplotlib 2017-06-14 00:47:20,582 DEBUG quick_mpl in Q_mpl 2017-06-14 00:47:20,582 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg clearflags ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_guess_xducerxy run_guess_xducerxy_npy run_loaddb run_loadlta_npy run_loadping run_lstconfig run_lsthdg run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd_lta run_pybincmd_uhdas run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanlta_npy run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy run_xducerxy_npy scanping setflags smoothr timegrid timslip ubprint write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2017-06-14 00:47:20,582 INFO quick_adcp cwd is /data/MGL1704/proc/os75nb about to run these steps: - editsetup - scandata - avg_and_load - setflags - getnav - get_headcorr - rotate - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - apply_edit - navsteps - lst_temp - calib - matfiles - find_pflags 2017-06-14 00:47:20,583 INFO quick_adcp original fix file is a_mgl.gps 2017-06-14 00:47:20,597 INFO quick_adcp smoothed nav file is a_mgl_refsm.asc 2017-06-14 00:47:20,598 DEBUG quick_asect extracting matlab files for os75, nb pings 2017-06-14 00:47:20,614 DEBUG quick_setup data directory: /home/data/MGL1704/raw/os75 2017-06-14 00:47:20,616 INFO quick_setup found 204 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/MGL1704/raw/os75/*.raw" 2017-06-14 00:47:20,618 DEBUG quick_setup found 204 files from original filelist 2017-06-14 00:47:20,618 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MGL1704/raw/os75/mgl2017_139_66929.raw ... 2017-06-14 00:47:20,619 DEBUG quick_adcp Wed Jun 14 00:47:20 2017 running quick_adcp.py as follows: --cntfile /home/data/MGL1704/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_mgl dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 30 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2017 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx64 binos lnx64 btrk_step 1 cfgpath /home/data/MGL1704/proc/os75nb/config cntfile /home/data/MGL1704/proc/os75nb/os75nb_qpy.cnt commands None configtype python cruisename MGL1704 data_def vmadcp.def datadir /home/data/MGL1704/raw/os75 datafile_glob *.raw datatype uhdas dbname a_mgl dday_bailout None debug False diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/MGL1704/raw/os75/mgl2017_139_66929.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_19912.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_147_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_148_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_149_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_150_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_151_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_152_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_153_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_154_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_155_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_156_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_157_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_158_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_159_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_160_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_161_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_162_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_00000.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_07200.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_14400.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_21600.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_28800.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_36000.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_43200.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_50400.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_57600.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_64800.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_72000.raw', '/home/data/MGL1704/raw/os75/mgl2017_163_79200.raw', '/home/data/MGL1704/raw/os75/mgl2017_164_00000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 30 fixfile a_mgl.gps frequency 75 gbin_style python gbindirbase /home/data/MGL1704/gbin hcorr_inst seapath help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 300 max_search_depth 1000 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 overview False pgmin 50 ping_headcorr False pingtype nb post_headcorr None printformats png proc_engine python proc_yearbase 2017 progdir /home/currents/programs py_gbindirbase /home/data/MGL1704/gbin rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_mgl_refsm.asc sonar os75nb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2017 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2017-06-14 00:47:20,619 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:20,619 INFO quick_adcp step 1: set up editing files 2017-06-14 00:47:20,619 DEBUG quick_run executing commands from /data/MGL1704/proc/os75nb/edit 2017-06-14 00:47:20,620 DEBUG quick_run setup.m exists. not replacing 2017-06-14 00:47:20,620 DEBUG quick_run asetup.m exists. not replacing 2017-06-14 00:47:20,620 DEBUG quick_run aflagit_setup.m exists. not replacing 2017-06-14 00:47:20,620 DEBUG quick_subs dbname: ../adcpdb/a_mgl pg_min: 50 clear_range /* reset range */ clear_all_bits /* clear flags except pg_min*/ clear_bad_profile /* reset access vars lgb */ time_ranges: all 2017-06-14 00:47:20,620 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:20,620 INFO quick_adcp step 2: scan files for time range 2017-06-14 00:47:20,620 INFO quick_adcp about to run numpy scan, requiring python gbins 2017-06-14 00:47:20,621 DEBUG quick_npy Starting: scanping 2017-06-14 00:47:20,930 DEBUG quick_npy Ending: scanping 2017-06-14 00:47:20,931 DEBUG quick_subs start_end_time 2017/05/20 18:35:33 to 2017/05/28 05:42:09 2017-06-14 00:47:20,931 DEBUG quick_subs dd0: 139.774687 dd1: 147.237604 2017-06-14 00:47:20,931 INFO quick_adcp in quick_adcp.py: after scan; look for database times in /data/MGL1704/proc/os75nb 2017-06-14 00:47:20,931 INFO quick_adcp looking for database with adcpdb/a_mgl*.blk 2017-06-14 00:47:20,932 INFO quick_adcp database found: listing blocks 2017-06-14 00:47:20,932 DEBUG quick_subs removing a_mgldir.blk 2017-06-14 00:47:20,932 DEBUG quick_subs about to run mkblkdir 2017-06-14 00:47:20,932 DEBUG quick_subs database still exists; rerunning mkdirblk 2017-06-14 00:47:20,933 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2017-06-14 00:47:20,943 DEBUG quick_subs database passes. 2017-06-14 00:47:20,944 DEBUG quick_subs start_end_time 2017/05/28 05:36:55 to 2017/06/14 00:31:54 2017-06-14 00:47:20,944 DEBUG quick_subs dd0: 147.233970 dd1: 164.022153 2017-06-14 00:47:20,944 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2017-06-14 00:47:20,944 DEBUG quick_adcp origdb_time_range is 2017/05/28 05:36:55 to 2017/06/14 00:31:54 2017-06-14 00:47:20,944 DEBUG quick_adcp (147.233970 to 164.022153) 2017-06-14 00:47:20,944 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:20,945 INFO quick_adcp step 3: generate averaged data... 2017-06-14 00:47:20,945 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2017-06-14 00:47:20,945 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:20,945 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/load 2017-06-14 00:47:20,945 DEBUG quick_setup running python command "run_pingavg_npy" 2017-06-14 00:47:20,945 DEBUG quick_npy Starting: pingavg 2017-06-14 00:47:20,948 DEBUG quick_npy singleping editing parameters: 2017-06-14 00:47:20,948 DEBUG quick_npy bigtarget_mab_window : 11 2017-06-14 00:47:20,948 DEBUG quick_npy rl_endbin : 20 2017-06-14 00:47:20,948 DEBUG quick_npy max_search_depth : 1000 2017-06-14 00:47:20,948 DEBUG quick_npy cor_cutoff : 120 2017-06-14 00:47:20,948 DEBUG quick_npy ampfilt : 40 2017-06-14 00:47:20,948 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2017-06-14 00:47:20,949 DEBUG quick_npy rl_startbin : 2 2017-06-14 00:47:20,949 DEBUG quick_npy ecutoff : 1 2017-06-14 00:47:20,949 DEBUG quick_npy refavg_valcutoff : 1 2017-06-14 00:47:20,949 DEBUG quick_npy weakprof_percent : 30 2017-06-14 00:47:20,949 DEBUG quick_npy bigtarget_ampthresh : 55 2017-06-14 00:47:20,956 INFO pingavg Pingavg.run for time range 164.000011 to 164.032828 2017-06-14 00:47:20,986 DEBUG pingavg Chunk 1 of 1, 164.000011 to 164.032828 2017-06-14 00:47:20,986 DEBUG pingavg Nothing written 2017-06-14 00:47:20,986 DEBUG quick_npy wrote 0 averages 2017-06-14 00:47:20,986 DEBUG quick_npy Ending: pingavg 2017-06-14 00:47:20,987 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:20,987 INFO quick_adcp step 4: load averaged data (to database) 2017-06-14 00:47:20,987 DEBUG quick_subs in del_overlapping 2017-06-14 00:47:20,988 DEBUG quick_subs lastblock: 2017-06-14 00:47:20,988 DEBUG quick_subs 17 2017-06-14 00:47:20,988 DEBUG quick_subs lastcmd: 2017-06-14 00:47:20,988 DEBUG quick_subs 17 2017-06-14 00:47:20,988 DEBUG quick_subs delblks: 2017-06-14 00:47:20,988 DEBUG quick_subs [17] 2017-06-14 00:47:20,988 DEBUG quick_subs loadblks: 2017-06-14 00:47:20,988 DEBUG quick_subs [17] 2017-06-14 00:47:20,989 DEBUG quick_subs about to run mkblkdir 2017-06-14 00:47:20,989 DEBUG quick_subs database still exists; rerunning mkdirblk 2017-06-14 00:47:20,989 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2017-06-14 00:47:20,999 DEBUG quick_subs database passes. 2017-06-14 00:47:21,000 DEBUG quick_subs start_end_time 2017/05/28 05:36:55 to 2017/06/13 21:31:55 2017-06-14 00:47:21,000 DEBUG quick_subs dd0: 147.233970 dd1: 163.897164 2017-06-14 00:47:21,001 DEBUG quick_run [17] 2017-06-14 00:47:21,001 DEBUG quick_run cmdlist 2017-06-14 00:47:21,001 DEBUG quick_run ['./ens_blk017.cmd'] 2017-06-14 00:47:21,002 INFO quick_run Warning: 1 files will be loaded; 17 already exist 2017-06-14 00:47:21,002 INFO quick_run Wed Jun 14 00:47:21 2017 2017-06-14 00:47:21,003 INFO quick_run about to load uhdas files 2017-06-14 00:47:21,003 INFO quick_run /home/data/MGL1704/raw/os75/mgl2017_139_66929.raw /home/data/MGL1704/raw/os75/mgl2017_147_19912.raw /home/data/MGL1704/raw/os75/mgl2017_147_21600.raw /home/data/MGL1704/raw/os75/mgl2017_147_28800.raw /home/data/MGL1704/raw/os75/mgl2017_147_36000.raw ... 2017-06-14 00:47:21,003 DEBUG quick_setup load/ldcodas.tmp exists 2017-06-14 00:47:21,003 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:21,003 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/load 2017-06-14 00:47:21,003 DEBUG quick_setup running python command "ldcodas" 2017-06-14 00:47:21,003 DEBUG quick_subs filling "thisload" timerange 2017-06-14 00:47:21,004 DEBUG quick_subs in ldcodas 2017-06-14 00:47:21,004 DEBUG quick_subs cmdlist: 2017-06-14 00:47:21,004 DEBUG quick_subs ['./ens_blk017.cmd'] 2017-06-14 00:47:21,004 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mgl DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2017 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk017.cmd 2017-06-14 00:47:21,005 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/ldcodas ldcodas.tmp 2017-06-14 00:47:21,018 DEBUG quick_subs removing a_mgldir.blk 2017-06-14 00:47:21,019 DEBUG quick_subs about to run mkblkdir 2017-06-14 00:47:21,019 DEBUG quick_subs database still exists; rerunning mkdirblk 2017-06-14 00:47:21,019 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2017-06-14 00:47:21,030 DEBUG quick_subs database passes. 2017-06-14 00:47:21,030 DEBUG quick_subs start_end_time 2017/05/28 05:36:55 to 2017/06/14 00:46:53 2017-06-14 00:47:21,031 DEBUG quick_subs dd0: 147.233970 dd1: 164.032558 2017-06-14 00:47:21,031 INFO quick_adcp loaded_time_range is 2017/05/28 05:36:55 to 2017/06/14 00:46:53 2017-06-14 00:47:21,031 INFO quick_adcp (147.233970 to 164.032558) 2017-06-14 00:47:21,031 INFO quick_adcp origdb_time_range is 2017/05/28 05:36:55 to 2017/06/14 00:31:54 2017-06-14 00:47:21,031 INFO quick_adcp (147.233970 to 164.022153) 2017-06-14 00:47:21,032 INFO quick_adcp thisload_time_range is 2017/06/13 21:36:53 to 2017/06/14 00:46:53 2017-06-14 00:47:21,032 INFO quick_adcp (163.900613 to 163.900613) 2017-06-14 00:47:21,032 INFO quick_adcp --------------------- 2017-06-14 00:47:21,032 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:21,032 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/adcpdb 2017-06-14 00:47:21,032 DEBUG quick_setup running python command "lst_conf" 2017-06-14 00:47:21,033 DEBUG quick_subs dbname: a_mgl output: a_mgl.cnh time_ranges: all 2017-06-14 00:47:21,033 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_conf lst_conf.tmp 2017-06-14 00:47:22,547 DEBUG quick_setup found (in edit/asetup.m): 2017-06-14 00:47:22,547 DEBUG quick_setup config.beamangle is 30 2017-06-14 00:47:22,547 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:22,547 INFO quick_adcp step 5: set up files for gautoedit.py 2017-06-14 00:47:22,547 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2017-06-14 00:47:22,547 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:22,548 INFO quick_adcp step 6: set up files for gautoedit.py 2017-06-14 00:47:22,548 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:22,548 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/edit 2017-06-14 00:47:22,548 DEBUG quick_setup running python command "setflags" 2017-06-14 00:47:22,548 DEBUG quick_subs dbname: ../adcpdb/a_mgl pg_min: 50 set_range_bit time_ranges: all 2017-06-14 00:47:22,548 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2017-06-14 00:47:22,586 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:22,586 INFO quick_adcp step 7: get navigation 2017-06-14 00:47:22,586 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:22,586 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:22,586 DEBUG quick_setup running python command "catnav" 2017-06-14 00:47:22,589 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2017-06-14 00:47:22,589 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:22,589 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/cal/rotate 2017-06-14 00:47:22,589 DEBUG quick_setup running python command "lst_hdg" 2017-06-14 00:47:22,589 DEBUG quick_subs dbname: ../../adcpdb/a_mgl output: scn.hdg step_size= 1 year_base= 2017 time_ranges: all 2017-06-14 00:47:22,589 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_hdg lst_hdg.tmp 2017-06-14 00:47:22,617 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:22,618 INFO quick_adcp step 8: get heading correction 2017-06-14 00:47:22,618 DEBUG quick_run hcorr_inst is seapath 2017-06-14 00:47:22,618 DEBUG quick_mpl Starting plot: hcorr 2017-06-14 00:47:22,677 DEBUG quick_mplplots found 16.798581 days of data 2017-06-14 00:47:22,677 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2017-06-14 00:47:22,677 DEBUG quick_mplplots printing 5 pages 2017-06-14 00:47:23,383 DEBUG quick_mpl Ending plot: hcorr 2017-06-14 00:47:23,384 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:23,384 INFO quick_adcp step 9: rotate velocities 2017-06-14 00:47:23,384 DEBUG quick_setup cal/rotate/norotate.tmp exists 2017-06-14 00:47:23,384 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:23,384 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/cal/rotate 2017-06-14 00:47:23,384 DEBUG quick_setup running python command "norotate" 2017-06-14 00:47:23,384 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. */ DB_NAME: ../../adcpdb/a_mgl LOG_FILE: rotate.log TIME_RANGE: 2017/05/28 05:36:55 to 2017/06/14 00:46:53 OPTION_LIST: water_and_bottom_track: year_base= 2017 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2017-06-14 00:47:23,385 DEBUG quick_setup about to run echo "writing dummy rotate file" 2017-06-14 00:47:23,389 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:23,389 INFO quick_adcp step 10: nav steps: run adcpsect 2017-06-14 00:47:23,389 DEBUG quick_setup nav/as_nav.tmp exists 2017-06-14 00:47:23,390 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:23,390 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:23,390 DEBUG quick_setup running python command "as_nav" 2017-06-14 00:47:23,390 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl step_size: 1 ndepth: 20 time_ranges: separate year_base= 2017 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2017/05/28 05:36:55 to 2017/06/14 00:46:53 /* the whole time range */ 2017-06-14 00:47:23,390 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2017-06-14 00:47:23,444 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:23,444 INFO quick_adcp step 11: nav steps: run refabs 2017-06-14 00:47:23,444 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:23,444 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:23,444 DEBUG quick_setup running python command "refabs" 2017-06-14 00:47:23,444 DEBUG quick_subs fix_file_type: simple reference_file: a_mgl.nav fix_file: a_mgl.gps output: a_mgl.ref year_base= 2017 ensemble_length= 300 gap_tolerance= 10 2017-06-14 00:47:23,445 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2017-06-14 00:47:23,491 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:23,491 INFO quick_adcp step 12: nav steps: run smoothr for plots 2017-06-14 00:47:23,491 DEBUG quick_setup nav/smoothr.tmp exists 2017-06-14 00:47:23,491 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:23,491 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:23,492 DEBUG quick_setup running python command "smoothr" 2017-06-14 00:47:23,492 DEBUG quick_subs reference_file: a_mgl.nav refabs_output: a_mgl.ref output: a_mgl.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2017-06-14 00:47:23,492 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2017-06-14 00:47:23,714 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:23,714 INFO quick_adcp step 13: nav steps: smooth navigation 2017-06-14 00:47:23,714 INFO quick_adcp about to run numpy refsm 2017-06-14 00:47:23,714 DEBUG quick_npy Starting: refsm 2017-06-14 00:47:23,862 DEBUG nav dtmin = -0.50 dtmax = 4.59 2017-06-14 00:47:24,052 DEBUG quick_npy Ending: refsm 2017-06-14 00:47:24,052 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:24,052 INFO quick_adcp step 14: nav steps: put smoothed nav into codasdb 2017-06-14 00:47:24,052 DEBUG quick_setup nav/putnav.tmp exists 2017-06-14 00:47:24,052 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:24,052 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:24,053 DEBUG quick_setup running python command "putnav" 2017-06-14 00:47:24,053 DEBUG quick_subs dbname: ../adcpdb/a_mgl position_file: a_mgl_refsm.asc year_base= 2017 tolerance= 5 navigation_sources: gps end 2017-06-14 00:47:24,053 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2017-06-14 00:47:24,119 INFO quick_adcp plotting navigation 2017-06-14 00:47:24,120 DEBUG quick_mpl Starting plot: nav 2017-06-14 00:47:24,480 DEBUG quick_mpl Ending plot: nav 2017-06-14 00:47:24,480 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:24,480 INFO quick_adcp step 15: nav steps: make reflayer plots 2017-06-14 00:47:24,480 DEBUG quick_mpl Starting plot: refl 2017-06-14 00:47:24,621 DEBUG quick_mplplots found 16.795144 days of data 2017-06-14 00:47:24,621 DEBUG quick_mplplots start day is 147.000000 2017-06-14 00:47:24,621 DEBUG quick_mplplots figures with 2.000000 days per page 2017-06-14 00:47:24,622 DEBUG quick_mplplots printing 9 pages 2017-06-14 00:47:24,622 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2017-06-14 00:47:25,318 DEBUG quick_mpl Ending plot: refl 2017-06-14 00:47:25,318 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:25,318 INFO quick_adcp step 16: find profile flags 2017-06-14 00:47:25,319 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:25,319 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/edit 2017-06-14 00:47:25,319 DEBUG quick_setup running python command "run_autoedit_npy" 2017-06-14 00:47:25,319 DEBUG quick_npy Starting: autoedit 2017-06-14 00:47:25,476 DEBUG pingedit wrote 1 bad bins to abadbin_tmp.asc 2017-06-14 00:47:25,498 DEBUG pingedit wrote 1 bad profiles to abadprf_tmp.asc 2017-06-14 00:47:25,498 DEBUG quick_npy Ending: autoedit 2017-06-14 00:47:25,499 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:25,499 INFO quick_adcp step 17: apply editing 2017-06-14 00:47:25,499 DEBUG quick_run starting in: /data/MGL1704/proc/os75nb 2017-06-14 00:47:25,499 DEBUG quick_run executing commands from: edit 2017-06-14 00:47:25,501 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/dbupdate ../adcpdb/a_mgl abadprf_tmp.asc 2017-06-14 00:47:25,506 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/badbin ../adcpdb/a_mgl abadbin_tmp.asc 2017-06-14 00:47:25,514 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/set_lgb ../adcpdb/a_mgl 30 2017-06-14 00:47:25,521 DEBUG quick_subs dbname: ../adcpdb/a_mgl pg_min: 50 set_range_bit time_ranges: all 2017-06-14 00:47:25,521 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2017-06-14 00:47:25,561 DEBUG quick_run changing directories back to /data/MGL1704/proc/os75nb 2017-06-14 00:47:25,562 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:25,562 INFO quick_adcp step 18: run nav steps 2017-06-14 00:47:25,562 DEBUG quick_setup nav/as_nav.tmp exists 2017-06-14 00:47:25,562 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:25,562 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:25,562 DEBUG quick_setup running python command "as_nav" 2017-06-14 00:47:25,562 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl step_size: 1 ndepth: 20 time_ranges: separate year_base= 2017 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2017/05/28 05:36:55 to 2017/06/14 00:46:53 /* the whole time range */ 2017-06-14 00:47:25,563 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2017-06-14 00:47:25,788 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:25,788 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:25,788 DEBUG quick_setup running python command "refabs" 2017-06-14 00:47:25,788 DEBUG quick_subs fix_file_type: simple reference_file: a_mgl.nav fix_file: a_mgl.gps output: a_mgl.ref year_base= 2017 ensemble_length= 300 gap_tolerance= 10 2017-06-14 00:47:26,425 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2017-06-14 00:47:26,504 DEBUG quick_setup nav/smoothr.tmp exists 2017-06-14 00:47:26,505 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:26,505 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:26,505 DEBUG quick_setup running python command "smoothr" 2017-06-14 00:47:26,505 DEBUG quick_subs reference_file: a_mgl.nav refabs_output: a_mgl.ref output: a_mgl.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2017-06-14 00:47:26,509 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2017-06-14 00:47:26,730 DEBUG quick_npy Starting: refsm 2017-06-14 00:47:26,870 DEBUG nav dtmin = -0.50 dtmax = 4.59 2017-06-14 00:47:27,058 DEBUG quick_npy Ending: refsm 2017-06-14 00:47:27,058 DEBUG quick_setup nav/putnav.tmp exists 2017-06-14 00:47:27,058 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:27,058 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:27,058 DEBUG quick_setup running python command "putnav" 2017-06-14 00:47:27,058 DEBUG quick_subs dbname: ../adcpdb/a_mgl position_file: a_mgl_refsm.asc year_base= 2017 tolerance= 5 navigation_sources: gps end 2017-06-14 00:47:27,059 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2017-06-14 00:47:27,125 DEBUG quick_mpl Starting plot: nav 2017-06-14 00:47:27,486 DEBUG quick_mpl Ending plot: nav 2017-06-14 00:47:27,487 DEBUG quick_mpl Starting plot: refl 2017-06-14 00:47:27,628 DEBUG quick_mplplots found 16.795144 days of data 2017-06-14 00:47:27,628 DEBUG quick_mplplots start day is 147.000000 2017-06-14 00:47:27,628 DEBUG quick_mplplots figures with 2.000000 days per page 2017-06-14 00:47:27,628 DEBUG quick_mplplots printing 9 pages 2017-06-14 00:47:27,628 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2017-06-14 00:47:28,329 DEBUG quick_mpl Ending plot: refl 2017-06-14 00:47:28,329 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:28,330 INFO quick_adcp step 19: plot temperature 2017-06-14 00:47:28,330 DEBUG quick_setup edit/lst_temp.tmp exists 2017-06-14 00:47:28,330 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:28,330 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/edit 2017-06-14 00:47:28,330 DEBUG quick_setup running python command "lst_temp" 2017-06-14 00:47:28,330 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl.tem step_size= 1 year_base= 2017 time_ranges: all 2017-06-14 00:47:28,330 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_temp lst_temp.tmp 2017-06-14 00:47:28,367 DEBUG quick_mpl Starting plot: temp 2017-06-14 00:47:28,415 DEBUG quick_mplplots plotting 4839 points 2017-06-14 00:47:28,675 DEBUG quick_mpl Ending plot: temp 2017-06-14 00:47:28,676 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:28,676 INFO quick_adcp step 20: run calibration steps 2017-06-14 00:47:28,676 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2017-06-14 00:47:28,676 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:28,676 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/cal/botmtrk 2017-06-14 00:47:28,676 DEBUG quick_setup running python command "lst_btrk" 2017-06-14 00:47:28,677 DEBUG quick_subs dbname: ../../adcpdb/a_mgl output: a_mgl.btm step_size= 1 year_base= 2017 time_ranges: 2017/05/28 05:36:55 to 2017/06/14 00:46:53 /* whole time range */ 2017-06-14 00:47:28,677 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_btrk lst_btrk.tmp 2017-06-14 00:47:28,691 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2017-06-14 00:47:28,691 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:28,691 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/cal/botmtrk 2017-06-14 00:47:28,692 DEBUG quick_setup running python command "refabsbt" 2017-06-14 00:47:28,692 DEBUG quick_subs fix_file_type: simple reference_file: a_mgl.btm fix_file: ../../nav/a_mgl.gps output: a_mgl.ref year_base= 2017 ensemble_length= 300 gap_tolerance= 60 2017-06-14 00:47:28,692 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabsbt refabsbt.tmp 2017-06-14 00:47:28,698 DEBUG quick_mpl Starting plot: btcal 2017-06-14 00:47:28,699 DEBUG quick_mplplots No data in a_mgl.btm 2017-06-14 00:47:28,699 DEBUG quick_mplplots Returning from Btplot with no output 2017-06-14 00:47:28,700 DEBUG quick_mpl Ending plot: btcal 2017-06-14 00:47:28,700 DEBUG quick_setup nav/as_nav.tmp exists 2017-06-14 00:47:28,700 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:28,700 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/nav 2017-06-14 00:47:28,700 DEBUG quick_setup running python command "as_nav" 2017-06-14 00:47:28,700 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl step_size: 1 ndepth: 20 time_ranges: separate year_base= 2017 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2017/05/28 05:36:55 to 2017/06/14 00:46:53 /* the whole time range */ 2017-06-14 00:47:28,701 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2017-06-14 00:47:28,760 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2017-06-14 00:47:28,760 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:28,760 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/cal/watertrk 2017-06-14 00:47:28,760 DEBUG quick_setup running python command "timslip" 2017-06-14 00:47:28,760 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mgl.gps reference_file: ../../nav/a_mgl.nav output_file: a_mgl_7.cal year_base= 2017 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2017-06-14 00:47:28,760 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timslip timslip.tmp 2017-06-14 00:47:28,784 DEBUG quick_mpl Starting plot: wtcal 2017-06-14 00:47:28,787 DEBUG quick_mplplots Found 55 calibration points 2017-06-14 00:47:29,607 DEBUG quick_mpl Ending plot: wtcal 2017-06-14 00:47:29,607 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:29,607 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/cal/watertrk 2017-06-14 00:47:29,608 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2017-06-14 00:47:29,608 DEBUG quick_npy Starting: guess_xducerxy 2017-06-14 00:47:29,760 DEBUG quick_npy Ending: guess_xducerxy 2017-06-14 00:47:29,760 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:29,760 INFO quick_adcp step 21: extract matlab "allbins" 2017-06-14 00:47:29,760 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2017-06-14 00:47:29,760 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:29,760 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/vector 2017-06-14 00:47:29,760 DEBUG quick_setup running python command "timegrid" 2017-06-14 00:47:29,760 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_mgl.tmp 2017-06-14 00:47:29,768 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:29,769 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/vector 2017-06-14 00:47:29,769 DEBUG quick_setup running python command "as_vect" 2017-06-14 00:47:29,769 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_vect.tmp 2017-06-14 00:47:29,865 DEBUG quick_asect done making vector matfiles 2017-06-14 00:47:29,865 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:29,866 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/contour 2017-06-14 00:47:29,866 DEBUG quick_setup running python command "timegrid" 2017-06-14 00:47:29,866 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_mgl.tmp 2017-06-14 00:47:29,878 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:29,878 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/contour 2017-06-14 00:47:29,879 DEBUG quick_setup running python command "as_cont" 2017-06-14 00:47:29,879 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_cont.tmp 2017-06-14 00:47:30,033 DEBUG quick_setup starting in /data/MGL1704/proc/os75nb 2017-06-14 00:47:30,033 DEBUG quick_setup executing commands from /data/MGL1704/proc/os75nb/contour 2017-06-14 00:47:30,033 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_mgl 2017-06-14 00:47:30,342 DEBUG quick_asect done running getmat with "allbins" 2017-06-14 00:47:30,342 INFO quick_adcp --------------------------------------------- 2017-06-14 00:47:30,342 INFO quick_adcp step 22: write "cruise_info.txt" 2017-06-14 00:47:30,363 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2017-06-14 00:47:30,364 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2017-06-14 00:47:30,364 DEBUG root matfile is contour/contour_uv.mat 2017-06-14 00:47:30,370 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2017-06-14 00:47:30,370 DEBUG root matfile is vector/vector_uv.mat 2017-06-14 00:47:30,371 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2017-06-14 00:47:30,371 DEBUG root matfile is contour/contour_xy.mat 2017-06-14 00:47:30,371 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2017-06-14 00:47:30,371 DEBUG root matfile is vector/vector_xy.mat 2017-06-14 00:47:30,371 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2017-06-14 00:47:30,371 DEBUG root about to copy file edit/a_mgl.tem to /home/adcp/www/data/os75nb_temp.asc 2017-06-14 00:47:30,372 INFO root copying edit/a_mgl.tem to /home/adcp/www/data/os75nb_temp.asc 2017-06-14 00:47:33,700 DEBUG root about to copy netcdf file /home/data/MGL1704/proc/os75nb/contour/os75nb.nc to /home/adcp/www/data/os75nb.nc 2017-06-14 00:47:33,713 INFO root copying edit/a_mgl.tem to /home/adcp/www/data/os75nb.nc 2017-06-14 00:47:33,742 INFO root generating pingstats for os75nb 2017-06-14 00:47:33,742 INFO root Ending quick_adcp.py