2016-12-02 16:56:27,782 DEBUG root about to write control file parameters to --yearbase 2016 --cruisename jtest02 --configtype python --sonar os75bb --dbname a_skq --datatype uhdas --cfgpath /home/data/jtest02/proc/os75bb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea # xducer_dx, xducer_dy not set ## see config/jtest02_proc.py for other settings --skip_avg ## see above --max_search_depth 2000 --ping_headcorr --proc_engine python --refuv_smoothwin 3 --incremental --find_pflags --top_plotbin 1 --auto 2016-12-02 16:56:27,782 DEBUG quick_adcp sys.argv = /usr/local/currents/bin/run_quick.py -d os75bb 2016-12-02 16:56:27,784 DEBUG quick_setup found cruise_info.hcorr (seapath, sea, 0) 2016-12-02 16:56:27,784 DEBUG quick_setup no heading correction will be used within the ensembles but values are staged in cal/rotate/hcorr.asc 2016-12-02 16:56:27,785 INFO quick_setup fix file is a_skq.gps 2016-12-02 16:56:27,785 INFO quick_setup reflayer: ref_method = refsm 2016-12-02 16:56:27,785 INFO quick_setup reflayer: refuv_source = nav 2016-12-02 16:56:27,785 INFO quick_setup reflayer: refuv_smoothwin = 3 2016-12-02 16:56:27,786 INFO quick_adcp importing numpy version 1.8.2 2016-12-02 16:56:27,800 INFO quick_adcp importing matplotlib version 1.4.3 2016-12-02 16:56:28,008 DEBUG quick_mpl in Q_mpl 2016-12-02 16:56:28,008 INFO quick_adcp ===================================================== 2016-12-02 16:56:28,008 INFO quick_adcp ===================================================== 2016-12-02 16:56:28,008 INFO quick_adcp command line was: /usr/local/currents/bin/run_quick.py -d os75bb 2016-12-02 16:56:28,008 INFO quick_adcp cwd is /home/data/jtest02/proc/os75bb about to run these steps: - write_clearflags - scandata - avg_and_load - codaseditsetup - setflags - getnav - lst_hdg - plot_headcorr - navsteps - find_pflags - apply_edit - navsteps - lst_temp - plot_temp - lst_npings - calib - matfiles - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - codaseditsetup 2016-12-02 16:56:28,008 DEBUG quick_asect extracting matlab files for os75bb 2016-12-02 16:56:28,008 DEBUG quick_asect cannot determine top_plotbin. reverting to firstdepth 2016-12-02 16:56:28,008 DEBUG quick_setup data directory: /home/data/jtest02/raw/os75 2016-12-02 16:56:28,009 INFO quick_setup found 2 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/jtest02/raw/os75/*.raw" 2016-12-02 16:56:28,009 DEBUG quick_setup found 2 files from original filelist 2016-12-02 16:56:28,009 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/jtest02/raw/os75/skq2016_335_74377.raw ... 2016-12-02 16:56:28,009 DEBUG quick_adcp Fri Dec 2 16:56:28 2016 running quick_adcp.py as follows: --cntfile /home/data/jtest02/proc/os75bb/os75bb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_skq dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 30 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2016 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle None bl_half_width 3 btrk_step 1.5 cfgpath /home/data/jtest02/proc/os75bb/config cntfile /home/data/jtest02/proc/os75bb/os75bb_qpy.cnt commands None configtype python cruisename jtest02 data_def vmadcp.def data_filelist None datadir /home/data/jtest02/raw/os75 datafile_glob *.raw datatype uhdas dbname a_skq dday_bailout None debug False ens_len 300 expert None filelist ['/home/data/jtest02/raw/os75/skq2016_335_74377.raw', '/home/data/jtest02/raw/os75/skq2016_335_74461.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 30 fixfile a_skq.gps fixfilexy a_skq.agt frequency 75 hcorr_inst seapath help False incremental True instname os75 jitter 15 max_BLKprofiles 300 max_search_depth 2000 maxrunsecs None min_filter_fraction 0.5 mixed_pings False model os nosave_editcfg 0 numbins 128 pgmin 50 ping_headcorr True pingpref None pingtype bb printformats png proc_engine python proc_yearbase 2016 py_gbindirbase /home/data/jtest02/gbin ref_method refsm refuv_inputfile a_skq.gps refuv_smoothwin 3 refuv_source nav rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 save_lastens 0 skip_avg True sonar os75bb steps2rerun sum_xducer_dx 0 sum_xducer_dy 0 time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 top_plotbin 1 tuv_file refsm_tuv.asc txy_file a_skq.gps ub_type 1920 uhdas_config yearbase = 2016 uhdas_dir = /home/data/jtest02 sonar = os75bb gbin = /home/data/jtest02/gbin gbinsonar = /home/data/jtest02/gbin/os75 raw = /home/data/jtest02/raw rawsonar = /home/data/jtest02/raw/os75 rbin = /home/data/jtest02/rbin proc = /home/data/jtest02/proc procsonar = /home/data/jtest02/proc/os75bb other attributes: gbin_params = hdg_inst : gyro1 hdg_inst_msgs : [('gyro1', 'hdg'), ('seapath', 'sea'), ('gyro2', 'hdg')] hdg_msg : hdg pitch_inst : seapath pitch_msg : sea pos_inst : seapath pos_msg : gps_sea roll_inst : seapath roll_msg : sea hcorr = ['seapath', 'sea', 0.0] acc_heading_cutoff = 0.02 update_gbin False vardoc False varvals False wtrk_step 7 xducer_dx 0 xducer_dy 0 yearbase 2016 configured to run the following steps: write_clearflags scandata avg_and_load codaseditsetup setflags getnav lst_hdg plot_headcorr navsteps find_pflags apply_edit navsteps lst_temp plot_temp lst_npings calib matfiles adcpsect refabs smoothnav putnav refplots find_pflags codaseditsetup 2016-12-02 16:56:28,009 INFO quick_adcp --------------------------------------------- 2016-12-02 16:56:28,009 INFO quick_adcp step 1: set up files in "edit" directory 2016-12-02 16:56:28,010 INFO quick_run file exists (edit/clearflags.tmp). not writing 2016-12-02 16:56:28,010 INFO quick_adcp --------------------------------------------- 2016-12-02 16:56:28,010 INFO quick_adcp step 2: scan files for time range 2016-12-02 16:56:28,010 DEBUG quick_npy Starting: scanping 2016-12-02 16:56:28,012 ERROR quick_npy Failure in: scanping Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1037, in run_calc Calc() File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 283, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/rdiraw.py", line 1658, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2016-12-02 16:56:28,013 DEBUG quick_npy Ending: scanping 2016-12-02 16:56:28,013 ERROR quick_adcp cannot run numpy scan Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 1115, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1055, in run_scanping_npy self.run_calc('scanping', **kw) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_npy.py", line 1040, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') 2016-12-02 16:56:28,014 ERROR root running quick_adcp Traceback (most recent call last): File "/usr/local/currents/bin/run_quick.py", line 172, in quick_adcp(['--cntfile', cntfile_proc]) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_adcp.py", line 1130, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/usr/local/lib/python2.7/dist-packages/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn'