2016-08-05 17:06:31,004 INFO     quick_adcp   importing numpy version 1.8.1
2016-08-05 17:06:31,015 INFO     quick_adcp   importing matplotlib version 1.3.1
2016-08-05 17:06:31,114 INFO     quick_adcp   =====================================================
2016-08-05 17:06:31,114 INFO     quick_adcp   =====================================================
2016-08-05 17:06:31,114 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d os150bb
2016-08-05 17:06:31,114 INFO     quick_adcp   cwd is /home/data/RR1609/proc/os150bb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2016-08-05 17:06:31,177 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:31,177 INFO     quick_adcp   step 1: set up files in "edit" directory 

2016-08-05 17:06:31,177 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:31,177 INFO     quick_adcp   step 2: scan files for time range

2016-08-05 17:06:31,450 INFO     quick_adcp   looking for database with adcpdb/a_rr*.blk
2016-08-05 17:06:31,450 INFO     quick_adcp   database found: listing blocks
2016-08-05 17:06:31,461 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:31,461 INFO     quick_adcp   step 3: generate averaged data...
2016-08-05 17:06:31,494 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:31,494 INFO     quick_adcp   step 4: load averaged data (to database)
2016-08-05 17:06:31,537 INFO     quick_adcp   database time range:
2016-08-05 17:06:31,537 INFO     quick_adcp   2016/07/03  06:07:56 to 2016/08/05  17:05:28
2016-08-05 17:06:31,537 INFO     quick_adcp   (184.255509 to 217.712130)
2016-08-05 17:06:31,599 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:31,599 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2016-08-05 17:06:31,599 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:31,599 INFO     quick_adcp   step 6: run setflags?

2016-08-05 17:06:31,758 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:31,759 INFO     quick_adcp   step 7: get navigation

2016-08-05 17:06:32,310 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:32,310 INFO     quick_adcp   step 8: list heading

2016-08-05 17:06:32,408 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:32,408 INFO     quick_adcp   step 9: plot heading correction

2016-08-05 17:06:32,993 INFO     quick_adcp   
-------------------------
2016-08-05 17:06:32,994 INFO     quick_adcp   ---- running navsteps ---
2016-08-05 17:06:32,994 INFO     quick_adcp   -------------------------
2016-08-05 17:06:32,994 INFO     quick_adcp   step 10: nav steps: run adcpsect
2016-08-05 17:06:32,994 INFO     quick_adcp   navstep 1
2016-08-05 17:06:33,211 INFO     quick_adcp   -------------------------
2016-08-05 17:06:33,211 INFO     quick_adcp   step 11: nav steps: run refabs
2016-08-05 17:06:33,212 INFO     quick_adcp   navstep 2
2016-08-05 17:06:33,318 INFO     quick_adcp   -------------------------
2016-08-05 17:06:33,318 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2016-08-05 17:06:33,318 INFO     quick_adcp   navstep 3
2016-08-05 17:06:34,102 INFO     quick_adcp   -------------------------
2016-08-05 17:06:34,102 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2016-08-05 17:06:34,102 INFO     quick_adcp   navstep 4
2016-08-05 17:06:34,850 INFO     quick_adcp   -------------------------
2016-08-05 17:06:34,850 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2016-08-05 17:06:34,850 INFO     quick_adcp   navstep 5
2016-08-05 17:06:35,503 INFO     quick_adcp   -------------------------
2016-08-05 17:06:35,503 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2016-08-05 17:06:35,503 INFO     quick_adcp   navstep 6
2016-08-05 17:06:36,261 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:36,262 INFO     quick_adcp   step 10: find profile flags 

2016-08-05 17:06:36,735 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:36,735 INFO     quick_adcp   step 11: apply editing 

2016-08-05 17:06:36,909 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:36,909 INFO     quick_adcp   step 12: run calibration steps 

2016-08-05 17:06:38,274 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:38,274 INFO     quick_adcp   step 13: extract and plot temperature 

2016-08-05 17:06:38,719 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:38,719 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2016-08-05 17:06:39,079 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:39,079 INFO     quick_adcp   step 15: extract matlab "allbins" 

2016-08-05 17:06:41,486 INFO     quick_adcp   ---------------------------------------------
2016-08-05 17:06:41,486 INFO     quick_adcp   writing "cruise_info.txt"