2016-06-28 21:29:17,086 INFO     quick_adcp   importing numpy version 1.8.1
2016-06-28 21:29:17,095 INFO     quick_adcp   importing matplotlib version 1.3.1
2016-06-28 21:29:17,199 INFO     quick_adcp   =====================================================
2016-06-28 21:29:17,199 INFO     quick_adcp   =====================================================
2016-06-28 21:29:17,199 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb
2016-06-28 21:29:17,199 INFO     quick_adcp   cwd is /home/data/RR1608/proc/os75nb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2016-06-28 21:29:17,204 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,204 INFO     quick_adcp   step 1: set up files in "edit" directory 

2016-06-28 21:29:17,204 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,205 INFO     quick_adcp   step 2: scan files for time range

2016-06-28 21:29:17,227 INFO     quick_adcp   looking for database with adcpdb/a_rr*.blk
2016-06-28 21:29:17,227 INFO     quick_adcp   database found: listing blocks
2016-06-28 21:29:17,233 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,233 INFO     quick_adcp   step 3: generate averaged data...
2016-06-28 21:29:17,255 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,255 INFO     quick_adcp   step 4: load averaged data (to database)
2016-06-28 21:29:17,276 INFO     quick_adcp   database time range:
2016-06-28 21:29:17,276 INFO     quick_adcp   2016/06/26  06:46:58 to 2016/06/28  21:28:59
2016-06-28 21:29:17,276 INFO     quick_adcp   (177.282616 to 179.895127)
2016-06-28 21:29:17,283 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,283 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2016-06-28 21:29:17,283 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,283 INFO     quick_adcp   step 6: run setflags?

2016-06-28 21:29:17,299 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,299 INFO     quick_adcp   step 7: get navigation

2016-06-28 21:29:17,547 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,547 INFO     quick_adcp   step 8: list heading

2016-06-28 21:29:17,556 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:17,556 INFO     quick_adcp   step 9: plot heading correction

2016-06-28 21:29:17,789 INFO     quick_adcp   
-------------------------
2016-06-28 21:29:17,789 INFO     quick_adcp   ---- running navsteps ---
2016-06-28 21:29:17,789 INFO     quick_adcp   -------------------------
2016-06-28 21:29:17,789 INFO     quick_adcp   step 10: nav steps: run adcpsect
2016-06-28 21:29:17,789 INFO     quick_adcp   navstep 1
2016-06-28 21:29:17,805 INFO     quick_adcp   -------------------------
2016-06-28 21:29:17,805 INFO     quick_adcp   step 11: nav steps: run refabs
2016-06-28 21:29:17,805 INFO     quick_adcp   navstep 2
2016-06-28 21:29:17,818 INFO     quick_adcp   -------------------------
2016-06-28 21:29:17,819 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2016-06-28 21:29:17,819 INFO     quick_adcp   navstep 3
2016-06-28 21:29:17,866 INFO     quick_adcp   -------------------------
2016-06-28 21:29:17,866 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2016-06-28 21:29:17,866 INFO     quick_adcp   navstep 4
2016-06-28 21:29:17,912 INFO     quick_adcp   -------------------------
2016-06-28 21:29:17,912 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2016-06-28 21:29:17,912 INFO     quick_adcp   navstep 5
2016-06-28 21:29:18,130 INFO     quick_adcp   -------------------------
2016-06-28 21:29:18,130 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2016-06-28 21:29:18,130 INFO     quick_adcp   navstep 6
2016-06-28 21:29:18,565 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:18,565 INFO     quick_adcp   step 10: find profile flags 

2016-06-28 21:29:18,615 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:18,615 INFO     quick_adcp   step 11: apply editing 

2016-06-28 21:29:18,645 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:18,645 INFO     quick_adcp   step 12: run calibration steps 

2016-06-28 21:29:18,730 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:18,730 INFO     quick_adcp   step 13: extract and plot temperature 

2016-06-28 21:29:18,908 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:18,908 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2016-06-28 21:29:19,016 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:19,016 INFO     quick_adcp   step 15: extract matlab "allbins" 

2016-06-28 21:29:19,130 INFO     quick_adcp   ---------------------------------------------
2016-06-28 21:29:19,130 INFO     quick_adcp   writing "cruise_info.txt"