2016-03-25 15:47:20,638 INFO     quick_adcp   importing numpy
2016-03-25 15:47:20,667 INFO     quick_adcp   importing matplotlib
2016-03-25 15:47:20,915 INFO     quick_adcp   =====================================================
2016-03-25 15:47:20,915 INFO     quick_adcp   =====================================================
2016-03-25 15:47:20,916 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d wh300
2016-03-25 15:47:20,916 INFO     quick_adcp   cwd is /home/data/oc1603c/proc/wh300
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2016-03-25 15:47:20,936 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:20,936 INFO     quick_adcp   step 1: set up files in "edit" directory 

2016-03-25 15:47:20,936 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:20,937 INFO     quick_adcp   step 2: scan files for time range

2016-03-25 15:47:21,017 INFO     quick_adcp   looking for database with adcpdb/a_oc*.blk
2016-03-25 15:47:21,017 INFO     quick_adcp   database found: listing blocks
2016-03-25 15:47:21,036 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:21,036 INFO     quick_adcp   step 3: generate averaged data...
2016-03-25 15:47:21,115 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:21,115 INFO     quick_adcp   step 4: load averaged data (to database)
2016-03-25 15:47:21,259 INFO     quick_adcp   database time range:
2016-03-25 15:47:21,260 INFO     quick_adcp   2016/03/21  15:14:26 to 2016/03/25  15:46:21
2016-03-25 15:47:21,260 INFO     quick_adcp   (80.635023 to 84.657188)
2016-03-25 15:47:21,285 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:21,285 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2016-03-25 15:47:21,286 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:21,286 INFO     quick_adcp   step 6: run setflags?

2016-03-25 15:47:21,345 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:21,346 INFO     quick_adcp   step 7: get navigation

2016-03-25 15:47:22,704 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:22,704 INFO     quick_adcp   step 8: list heading

2016-03-25 15:47:22,739 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:22,739 INFO     quick_adcp   step 9: plot heading correction

2016-03-25 15:47:24,504 INFO     quick_adcp   
-------------------------
2016-03-25 15:47:24,504 INFO     quick_adcp   ---- running navsteps ---
2016-03-25 15:47:24,505 INFO     quick_adcp   -------------------------
2016-03-25 15:47:24,505 INFO     quick_adcp   step 10: nav steps: run adcpsect
2016-03-25 15:47:24,505 INFO     quick_adcp   navstep 1
2016-03-25 15:47:24,585 INFO     quick_adcp   -------------------------
2016-03-25 15:47:24,586 INFO     quick_adcp   step 11: nav steps: run refabs
2016-03-25 15:47:24,586 INFO     quick_adcp   navstep 2
2016-03-25 15:47:24,642 INFO     quick_adcp   -------------------------
2016-03-25 15:47:24,642 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2016-03-25 15:47:24,643 INFO     quick_adcp   navstep 3
2016-03-25 15:47:24,902 INFO     quick_adcp   -------------------------
2016-03-25 15:47:24,902 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2016-03-25 15:47:24,903 INFO     quick_adcp   navstep 4
2016-03-25 15:47:25,307 INFO     quick_adcp   -------------------------
2016-03-25 15:47:25,307 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2016-03-25 15:47:25,307 INFO     quick_adcp   navstep 5
2016-03-25 15:47:26,297 INFO     quick_adcp   -------------------------
2016-03-25 15:47:26,297 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2016-03-25 15:47:26,297 INFO     quick_adcp   navstep 6
2016-03-25 15:47:28,421 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:28,421 INFO     quick_adcp   step 10: find profile flags 

2016-03-25 15:47:28,747 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:28,747 INFO     quick_adcp   step 11: apply editing 

2016-03-25 15:47:28,830 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:28,830 INFO     quick_adcp   step 12: run calibration steps 

2016-03-25 15:47:31,097 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:31,097 INFO     quick_adcp   step 13: extract and plot temperature 

2016-03-25 15:47:31,889 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:31,889 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2016-03-25 15:47:32,609 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:32,609 INFO     quick_adcp   step 15: extract matlab "allbins" 

2016-03-25 15:47:33,302 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:47:33,302 INFO     quick_adcp   writing "cruise_info.txt"