2016-03-25 15:42:52,570 INFO     quick_adcp   importing numpy
2016-03-25 15:42:52,603 INFO     quick_adcp   importing matplotlib
2016-03-25 15:42:52,851 INFO     quick_adcp   =====================================================
2016-03-25 15:42:52,852 INFO     quick_adcp   =====================================================
2016-03-25 15:42:52,852 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb
2016-03-25 15:42:52,852 INFO     quick_adcp   cwd is /home/data/oc1603c/proc/os75nb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2016-03-25 15:42:52,863 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:52,863 INFO     quick_adcp   step 1: set up files in "edit" directory 

2016-03-25 15:42:52,863 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:52,863 INFO     quick_adcp   step 2: scan files for time range

2016-03-25 15:42:52,958 INFO     quick_adcp   looking for database with adcpdb/a_oc*.blk
2016-03-25 15:42:52,959 INFO     quick_adcp   database found: listing blocks
2016-03-25 15:42:52,978 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:52,978 INFO     quick_adcp   step 3: generate averaged data...
2016-03-25 15:42:53,055 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:53,055 INFO     quick_adcp   step 4: load averaged data (to database)
2016-03-25 15:42:53,172 INFO     quick_adcp   database time range:
2016-03-25 15:42:53,173 INFO     quick_adcp   2016/03/21  15:17:27 to 2016/03/25  15:42:21
2016-03-25 15:42:53,173 INFO     quick_adcp   (80.637118 to 84.654410)
2016-03-25 15:42:53,189 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:53,189 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2016-03-25 15:42:53,190 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:53,190 INFO     quick_adcp   step 6: run setflags?

2016-03-25 15:42:53,218 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:53,218 INFO     quick_adcp   step 7: get navigation

2016-03-25 15:42:54,352 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:54,352 INFO     quick_adcp   step 8: list heading

2016-03-25 15:42:54,385 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:54,386 INFO     quick_adcp   step 9: plot heading correction

2016-03-25 15:42:56,400 INFO     quick_adcp   
-------------------------
2016-03-25 15:42:56,410 INFO     quick_adcp   ---- running navsteps ---
2016-03-25 15:42:56,410 INFO     quick_adcp   -------------------------
2016-03-25 15:42:56,410 INFO     quick_adcp   step 10: nav steps: run adcpsect
2016-03-25 15:42:56,410 INFO     quick_adcp   navstep 1
2016-03-25 15:42:56,453 INFO     quick_adcp   -------------------------
2016-03-25 15:42:56,453 INFO     quick_adcp   step 11: nav steps: run refabs
2016-03-25 15:42:56,453 INFO     quick_adcp   navstep 2
2016-03-25 15:42:56,483 INFO     quick_adcp   -------------------------
2016-03-25 15:42:56,484 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2016-03-25 15:42:56,484 INFO     quick_adcp   navstep 3
2016-03-25 15:42:56,602 INFO     quick_adcp   -------------------------
2016-03-25 15:42:56,603 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2016-03-25 15:42:56,603 INFO     quick_adcp   navstep 4
2016-03-25 15:42:56,770 INFO     quick_adcp   -------------------------
2016-03-25 15:42:56,770 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2016-03-25 15:42:56,770 INFO     quick_adcp   navstep 5
2016-03-25 15:42:57,646 INFO     quick_adcp   -------------------------
2016-03-25 15:42:57,646 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2016-03-25 15:42:57,646 INFO     quick_adcp   navstep 6
2016-03-25 15:42:59,514 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:59,514 INFO     quick_adcp   step 10: find profile flags 

2016-03-25 15:42:59,759 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:59,759 INFO     quick_adcp   step 11: apply editing 

2016-03-25 15:42:59,836 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:42:59,836 INFO     quick_adcp   step 12: run calibration steps 

2016-03-25 15:43:01,953 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:43:01,953 INFO     quick_adcp   step 13: extract and plot temperature 

2016-03-25 15:43:02,636 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:43:02,636 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2016-03-25 15:43:03,069 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:43:03,070 INFO     quick_adcp   step 15: extract matlab "allbins" 

2016-03-25 15:43:03,312 INFO     quick_adcp   ---------------------------------------------
2016-03-25 15:43:03,312 INFO     quick_adcp   writing "cruise_info.txt"