2016-09-17 13:57:51,741 INFO     quick_adcp   importing numpy version 1.8.2
2016-09-17 13:57:51,757 INFO     quick_adcp   importing matplotlib version 1.3.1
2016-09-17 13:57:51,939 INFO     quick_adcp   =====================================================
2016-09-17 13:57:51,940 INFO     quick_adcp   =====================================================
2016-09-17 13:57:51,940 INFO     quick_adcp   command line was: /usr/local/currents/bin/run_quick.py -d nb300
2016-09-17 13:57:51,940 INFO     quick_adcp   cwd is /home/data/SP1619/proc/nb300
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2016-09-17 13:57:51,966 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:51,966 INFO     quick_adcp   step 1: set up files in "edit" directory 

2016-09-17 13:57:51,966 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:51,966 INFO     quick_adcp   step 2: scan files for time range

2016-09-17 13:57:52,019 INFO     quick_adcp   looking for database with adcpdb/a_sp*.blk
2016-09-17 13:57:52,020 INFO     quick_adcp   database found: listing blocks
2016-09-17 13:57:52,032 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:52,033 INFO     quick_adcp   step 3: generate averaged data...
2016-09-17 13:57:52,047 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:52,047 INFO     quick_adcp   step 4: load averaged data (to database)
2016-09-17 13:57:52,109 INFO     quick_adcp   database time range:
2016-09-17 13:57:52,110 INFO     quick_adcp   2016/09/10  15:44:47 to 2016/09/17  13:56:48
2016-09-17 13:57:52,110 INFO     quick_adcp   (253.656100 to 260.581111)
2016-09-17 13:57:52,140 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:52,140 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2016-09-17 13:57:52,141 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:52,141 INFO     quick_adcp   step 6: run setflags?

2016-09-17 13:57:52,204 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:52,204 INFO     quick_adcp   step 7: get navigation

2016-09-17 13:57:52,757 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:52,757 INFO     quick_adcp   step 8: list heading

2016-09-17 13:57:52,800 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:52,800 INFO     quick_adcp   step 9: plot heading correction

2016-09-17 13:57:53,591 INFO     quick_adcp   
-------------------------
2016-09-17 13:57:53,591 INFO     quick_adcp   ---- running navsteps ---
2016-09-17 13:57:53,591 INFO     quick_adcp   -------------------------
2016-09-17 13:57:53,591 INFO     quick_adcp   step 10: nav steps: run adcpsect
2016-09-17 13:57:53,591 INFO     quick_adcp   navstep 1
2016-09-17 13:57:53,679 INFO     quick_adcp   -------------------------
2016-09-17 13:57:53,679 INFO     quick_adcp   step 11: nav steps: run refabs
2016-09-17 13:57:53,679 INFO     quick_adcp   navstep 2
2016-09-17 13:57:53,720 INFO     quick_adcp   -------------------------
2016-09-17 13:57:53,720 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2016-09-17 13:57:53,720 INFO     quick_adcp   navstep 3
2016-09-17 13:57:54,000 INFO     quick_adcp   -------------------------
2016-09-17 13:57:54,000 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2016-09-17 13:57:54,000 INFO     quick_adcp   navstep 4
2016-09-17 13:57:54,310 INFO     quick_adcp   -------------------------
2016-09-17 13:57:54,310 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2016-09-17 13:57:54,310 INFO     quick_adcp   navstep 5
2016-09-17 13:57:54,816 INFO     quick_adcp   -------------------------
2016-09-17 13:57:54,816 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2016-09-17 13:57:54,816 INFO     quick_adcp   navstep 6
2016-09-17 13:57:55,632 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:55,632 INFO     quick_adcp   step 10: find profile flags 

2016-09-17 13:57:55,856 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:55,856 INFO     quick_adcp   step 11: apply editing 

2016-09-17 13:57:55,945 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:55,945 INFO     quick_adcp   step 12: run calibration steps 

2016-09-17 13:57:57,126 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:57,126 INFO     quick_adcp   step 13: extract and plot temperature 

2016-09-17 13:57:57,513 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:57,513 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2016-09-17 13:57:57,806 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:57,806 INFO     quick_adcp   step 15: extract matlab "allbins" 

2016-09-17 13:57:58,373 INFO     quick_adcp   ---------------------------------------------
2016-09-17 13:57:58,374 INFO     quick_adcp   writing "cruise_info.txt"