2015-08-22 13:31:06,913 INFO     quick_adcp   importing numpy
2015-08-22 13:31:06,946 INFO     quick_adcp   importing matplotlib
2015-08-22 13:31:07,195 INFO     quick_adcp   =====================================================
2015-08-22 13:31:07,195 INFO     quick_adcp   =====================================================
2015-08-22 13:31:07,195 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d wh300
2015-08-22 13:31:07,195 INFO     quick_adcp   cwd is /home/data/oc1508c_01/proc/wh300
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2015-08-22 13:31:07,241 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:07,241 INFO     quick_adcp   step 1: set up files in "edit" directory 

2015-08-22 13:31:07,241 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:07,241 INFO     quick_adcp   step 2: scan files for time range

2015-08-22 13:31:07,428 INFO     quick_adcp   looking for database with adcpdb/a_oc*.blk
2015-08-22 13:31:07,428 INFO     quick_adcp   database found: listing blocks
2015-08-22 13:31:07,449 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:07,449 INFO     quick_adcp   step 3: generate averaged data...
2015-08-22 13:31:07,536 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:07,536 INFO     quick_adcp   step 4: load averaged data (to database)
2015-08-22 13:31:07,634 INFO     quick_adcp   database time range:
2015-08-22 13:31:07,634 INFO     quick_adcp   2015/08/13  15:33:00 to 2015/08/22  13:29:01
2015-08-22 13:31:07,634 INFO     quick_adcp   (224.647917 to 233.561817)
2015-08-22 13:31:07,692 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:07,692 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2015-08-22 13:31:07,692 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:07,693 INFO     quick_adcp   step 6: run setflags?

2015-08-22 13:31:07,848 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:07,849 INFO     quick_adcp   step 7: get navigation

2015-08-22 13:31:09,227 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:09,227 INFO     quick_adcp   step 8: list heading

2015-08-22 13:31:09,321 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:09,321 INFO     quick_adcp   step 9: plot heading correction

2015-08-22 13:31:11,879 INFO     quick_adcp   
-------------------------
2015-08-22 13:31:11,981 INFO     quick_adcp   ---- running navsteps ---
2015-08-22 13:31:11,981 INFO     quick_adcp   -------------------------
2015-08-22 13:31:11,982 INFO     quick_adcp   step 10: nav steps: run adcpsect
2015-08-22 13:31:11,982 INFO     quick_adcp   navstep 1
2015-08-22 13:31:12,177 INFO     quick_adcp   -------------------------
2015-08-22 13:31:12,177 INFO     quick_adcp   step 11: nav steps: run refabs
2015-08-22 13:31:12,177 INFO     quick_adcp   navstep 2
2015-08-22 13:31:12,385 INFO     quick_adcp   -------------------------
2015-08-22 13:31:12,386 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2015-08-22 13:31:12,386 INFO     quick_adcp   navstep 3
2015-08-22 13:31:13,113 INFO     quick_adcp   -------------------------
2015-08-22 13:31:13,113 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2015-08-22 13:31:13,113 INFO     quick_adcp   navstep 4
2015-08-22 13:31:14,274 INFO     quick_adcp   -------------------------
2015-08-22 13:31:14,274 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2015-08-22 13:31:14,275 INFO     quick_adcp   navstep 5
2015-08-22 13:31:15,820 INFO     quick_adcp   -------------------------
2015-08-22 13:31:15,820 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2015-08-22 13:31:15,821 INFO     quick_adcp   navstep 6
2015-08-22 13:31:18,392 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:18,518 INFO     quick_adcp   step 10: find profile flags 

2015-08-22 13:31:19,140 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:19,140 INFO     quick_adcp   step 11: apply editing 

2015-08-22 13:31:19,415 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:19,415 INFO     quick_adcp   step 12: run calibration steps 

2015-08-22 13:31:22,987 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:23,199 INFO     quick_adcp   step 13: extract and plot temperature 

2015-08-22 13:31:24,077 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:24,077 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2015-08-22 13:31:24,753 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:24,753 INFO     quick_adcp   step 15: extract matlab "allbins" 

2015-08-22 13:31:26,761 INFO     quick_adcp   ---------------------------------------------
2015-08-22 13:31:26,761 INFO     quick_adcp   writing "cruise_info.txt"