2015-03-27 20:11:03,557 INFO     quick_adcp   importing numpy
2015-03-27 20:11:03,585 INFO     quick_adcp   importing matplotlib
2015-03-27 20:11:03,836 INFO     quick_adcp   =====================================================
2015-03-27 20:11:03,837 INFO     quick_adcp   =====================================================
2015-03-27 20:11:03,837 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d wh300
2015-03-27 20:11:03,837 INFO     quick_adcp   cwd is /home/data/oc1503d_01/proc/wh300
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2015-03-27 20:11:03,859 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:03,859 INFO     quick_adcp   step 1: set up files in "edit" directory 

2015-03-27 20:11:03,860 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:03,860 INFO     quick_adcp   step 2: scan files for time range

2015-03-27 20:11:03,947 INFO     quick_adcp   looking for database with adcpdb/a_oc*.blk
2015-03-27 20:11:03,948 INFO     quick_adcp   database found: listing blocks
2015-03-27 20:11:03,971 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:03,971 INFO     quick_adcp   step 3: generate averaged data...
2015-03-27 20:11:04,060 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:04,060 INFO     quick_adcp   step 4: load averaged data (to database)
2015-03-27 20:11:04,128 INFO     quick_adcp   database time range:
2015-03-27 20:11:04,128 INFO     quick_adcp   2015/03/24  18:49:32 to 2015/03/27  20:09:59
2015-03-27 20:11:04,129 INFO     quick_adcp   (82.784398 to 85.840266)
2015-03-27 20:11:04,156 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:04,157 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2015-03-27 20:11:04,157 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:04,158 INFO     quick_adcp   step 6: run setflags?

2015-03-27 20:11:04,224 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:04,224 INFO     quick_adcp   step 7: get navigation

2015-03-27 20:11:05,268 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:05,268 INFO     quick_adcp   step 8: list heading

2015-03-27 20:11:05,302 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:05,302 INFO     quick_adcp   step 9: plot heading correction

2015-03-27 20:11:06,300 INFO     quick_adcp   
-------------------------
2015-03-27 20:11:06,301 INFO     quick_adcp   ---- running navsteps ---
2015-03-27 20:11:06,301 INFO     quick_adcp   -------------------------
2015-03-27 20:11:06,301 INFO     quick_adcp   step 10: nav steps: run adcpsect
2015-03-27 20:11:06,301 INFO     quick_adcp   navstep 1
2015-03-27 20:11:06,393 INFO     quick_adcp   -------------------------
2015-03-27 20:11:06,393 INFO     quick_adcp   step 11: nav steps: run refabs
2015-03-27 20:11:06,393 INFO     quick_adcp   navstep 2
2015-03-27 20:11:06,871 INFO     quick_adcp   -------------------------
2015-03-27 20:11:06,973 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2015-03-27 20:11:06,973 INFO     quick_adcp   navstep 3
2015-03-27 20:11:07,245 INFO     quick_adcp   -------------------------
2015-03-27 20:11:07,246 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2015-03-27 20:11:07,246 INFO     quick_adcp   navstep 4
2015-03-27 20:11:07,657 INFO     quick_adcp   -------------------------
2015-03-27 20:11:07,657 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2015-03-27 20:11:07,658 INFO     quick_adcp   navstep 5
2015-03-27 20:11:08,933 INFO     quick_adcp   -------------------------
2015-03-27 20:11:08,933 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2015-03-27 20:11:08,934 INFO     quick_adcp   navstep 6
2015-03-27 20:11:10,801 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:10,802 INFO     quick_adcp   step 10: find profile flags 

2015-03-27 20:11:11,132 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:11,132 INFO     quick_adcp   step 11: apply editing 

2015-03-27 20:11:11,221 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:11,221 INFO     quick_adcp   step 12: run calibration steps 

2015-03-27 20:11:13,898 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:13,898 INFO     quick_adcp   step 13: extract and plot temperature 

2015-03-27 20:11:14,588 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:14,589 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2015-03-27 20:11:15,014 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:15,015 INFO     quick_adcp   step 15: extract matlab "allbins" 

2015-03-27 20:11:15,618 INFO     quick_adcp   ---------------------------------------------
2015-03-27 20:11:15,618 INFO     quick_adcp   writing "cruise_info.txt"