2016-08-07 10:59:31,151 INFO     quick_adcp   importing numpy version 1.8.2
2016-08-07 10:59:31,159 INFO     quick_adcp   importing matplotlib version 1.4.3
2016-08-07 10:59:31,245 INFO     quick_adcp   =====================================================
2016-08-07 10:59:31,245 INFO     quick_adcp   =====================================================
2016-08-07 10:59:31,245 INFO     quick_adcp   command line was: /usr/local/currents/bin/run_quick.py -d wh300
2016-08-07 10:59:31,245 INFO     quick_adcp   cwd is /home/data/AT36/proc/wh300
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2016-08-07 10:59:31,253 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,253 INFO     quick_adcp   step 1: set up files in "edit" directory 

2016-08-07 10:59:31,253 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,253 INFO     quick_adcp   step 2: scan files for time range

2016-08-07 10:59:31,304 INFO     quick_adcp   looking for database with adcpdb/a_at*.blk
2016-08-07 10:59:31,304 INFO     quick_adcp   database found: listing blocks
2016-08-07 10:59:31,311 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,311 INFO     quick_adcp   step 3: generate averaged data...
2016-08-07 10:59:31,329 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,329 INFO     quick_adcp   step 4: load averaged data (to database)
2016-08-07 10:59:31,349 INFO     quick_adcp   database time range:
2016-08-07 10:59:31,349 INFO     quick_adcp   2016/07/28  15:59:43 to 2016/08/07  10:57:23
2016-08-07 10:59:31,349 INFO     quick_adcp   (209.666470 to 219.456516)
2016-08-07 10:59:31,367 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,367 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2016-08-07 10:59:31,367 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,367 INFO     quick_adcp   step 6: run setflags?

2016-08-07 10:59:31,390 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,391 INFO     quick_adcp   step 7: get navigation

2016-08-07 10:59:31,633 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,634 INFO     quick_adcp   step 8: list heading

2016-08-07 10:59:31,651 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:31,651 INFO     quick_adcp   step 9: plot heading correction

2016-08-07 10:59:32,050 INFO     quick_adcp   
-------------------------
2016-08-07 10:59:32,050 INFO     quick_adcp   ---- running navsteps ---
2016-08-07 10:59:32,050 INFO     quick_adcp   -------------------------
2016-08-07 10:59:32,050 INFO     quick_adcp   step 10: nav steps: run adcpsect
2016-08-07 10:59:32,050 INFO     quick_adcp   navstep 1
2016-08-07 10:59:32,078 INFO     quick_adcp   -------------------------
2016-08-07 10:59:32,078 INFO     quick_adcp   step 11: nav steps: run refabs
2016-08-07 10:59:32,078 INFO     quick_adcp   navstep 2
2016-08-07 10:59:32,107 INFO     quick_adcp   -------------------------
2016-08-07 10:59:32,107 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2016-08-07 10:59:32,107 INFO     quick_adcp   navstep 3
2016-08-07 10:59:32,239 INFO     quick_adcp   -------------------------
2016-08-07 10:59:32,239 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2016-08-07 10:59:32,239 INFO     quick_adcp   navstep 4
2016-08-07 10:59:32,371 INFO     quick_adcp   -------------------------
2016-08-07 10:59:32,371 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2016-08-07 10:59:32,371 INFO     quick_adcp   navstep 5
2016-08-07 10:59:32,584 INFO     quick_adcp   -------------------------
2016-08-07 10:59:32,584 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2016-08-07 10:59:32,584 INFO     quick_adcp   navstep 6
2016-08-07 10:59:33,005 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:33,005 INFO     quick_adcp   step 10: find profile flags 

2016-08-07 10:59:33,107 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:33,107 INFO     quick_adcp   step 11: apply editing 

2016-08-07 10:59:33,141 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:33,141 INFO     quick_adcp   step 12: run calibration steps 

2016-08-07 10:59:33,955 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:33,955 INFO     quick_adcp   step 13: extract and plot temperature 

2016-08-07 10:59:34,125 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:34,125 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2016-08-07 10:59:34,238 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:34,238 INFO     quick_adcp   step 15: extract matlab "allbins" 

2016-08-07 10:59:34,495 INFO     quick_adcp   ---------------------------------------------
2016-08-07 10:59:34,495 INFO     quick_adcp   writing "cruise_info.txt"