2016-05-16 20:06:42,917 INFO     quick_adcp   importing numpy version 1.8.1
2016-05-16 20:06:42,931 INFO     quick_adcp   importing matplotlib version 1.3.1
2016-05-16 20:06:43,124 INFO     quick_adcp   =====================================================
2016-05-16 20:06:43,125 INFO     quick_adcp   =====================================================
2016-05-16 20:06:43,125 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d os75bb
2016-05-16 20:06:43,125 INFO     quick_adcp   cwd is /home/data/SKQ201606S/proc/os75bb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2016-05-16 20:06:43,129 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,129 INFO     quick_adcp   step 1: set up files in "edit" directory 

2016-05-16 20:06:43,129 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,129 INFO     quick_adcp   step 2: scan files for time range

2016-05-16 20:06:43,150 INFO     quick_adcp   looking for database with adcpdb/a_skq*.blk
2016-05-16 20:06:43,150 INFO     quick_adcp   database found: listing blocks
2016-05-16 20:06:43,165 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,165 INFO     quick_adcp   step 3: generate averaged data...
2016-05-16 20:06:43,204 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,205 INFO     quick_adcp   step 4: load averaged data (to database)
2016-05-16 20:06:43,251 INFO     quick_adcp   database time range:
2016-05-16 20:06:43,251 INFO     quick_adcp   2016/05/15  15:24:47 to 2016/05/16  20:06:18
2016-05-16 20:06:43,251 INFO     quick_adcp   (135.642211 to 136.837708)
2016-05-16 20:06:43,266 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,266 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2016-05-16 20:06:43,267 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,267 INFO     quick_adcp   step 6: run setflags?

2016-05-16 20:06:43,287 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,288 INFO     quick_adcp   step 7: get navigation

2016-05-16 20:06:43,664 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,664 INFO     quick_adcp   step 8: list heading

2016-05-16 20:06:43,674 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:43,674 INFO     quick_adcp   step 9: plot heading correction

2016-05-16 20:06:44,034 INFO     quick_adcp   
-------------------------
2016-05-16 20:06:44,034 INFO     quick_adcp   ---- running navsteps ---
2016-05-16 20:06:44,034 INFO     quick_adcp   -------------------------
2016-05-16 20:06:44,034 INFO     quick_adcp   step 10: nav steps: run adcpsect
2016-05-16 20:06:44,034 INFO     quick_adcp   navstep 1
2016-05-16 20:06:44,049 INFO     quick_adcp   -------------------------
2016-05-16 20:06:44,049 INFO     quick_adcp   step 11: nav steps: run refabs
2016-05-16 20:06:44,049 INFO     quick_adcp   navstep 2
2016-05-16 20:06:44,059 INFO     quick_adcp   -------------------------
2016-05-16 20:06:44,060 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2016-05-16 20:06:44,060 INFO     quick_adcp   navstep 3
2016-05-16 20:06:44,084 INFO     quick_adcp   -------------------------
2016-05-16 20:06:44,084 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2016-05-16 20:06:44,084 INFO     quick_adcp   navstep 4
2016-05-16 20:06:44,115 INFO     quick_adcp   -------------------------
2016-05-16 20:06:44,115 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2016-05-16 20:06:44,115 INFO     quick_adcp   navstep 5
2016-05-16 20:06:44,438 INFO     quick_adcp   -------------------------
2016-05-16 20:06:44,438 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2016-05-16 20:06:44,438 INFO     quick_adcp   navstep 6
2016-05-16 20:06:44,781 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:44,781 INFO     quick_adcp   step 10: find profile flags 

2016-05-16 20:06:44,832 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:44,832 INFO     quick_adcp   step 11: apply editing 

2016-05-16 20:06:44,862 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:44,862 INFO     quick_adcp   step 12: run calibration steps 

2016-05-16 20:06:46,171 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:46,171 INFO     quick_adcp   step 13: extract and plot temperature 

2016-05-16 20:06:46,432 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:46,432 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2016-05-16 20:06:46,608 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:46,608 INFO     quick_adcp   step 15: extract matlab "allbins" 

2016-05-16 20:06:46,714 INFO     quick_adcp   ---------------------------------------------
2016-05-16 20:06:46,714 INFO     quick_adcp   writing "cruise_info.txt"