2014-04-22 16:07:26,164 DEBUG root about to write control file parameters to --yearbase 2014 --cruisename AT26_13 --configtype python --sonar os75nb --dbname a_at --datatype uhdas --cfgpath /home/data/AT26_13/proc/os75nb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea # xducer_dx, xducer_dy not set ## see config/AT26_13_proc.py for other settings --skip_avg ## see above --max_search_depth 2000 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2014-04-22 16:07:26,164 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb 2014-04-22 16:07:26,165 DEBUG quick_adcp progdir = /home/currents/programs 2014-04-22 16:07:26,165 DEBUG quick_adcp binos = lnx 2014-04-22 16:07:26,167 DEBUG quick_setup found cruise_info.hcorr (phins, hdg, 0) 2014-04-22 16:07:26,167 INFO quick_setup reflayer: getting ref_method from dbinfo.txt 2014-04-22 16:07:26,168 INFO quick_setup reflayer: reference method = refsm 2014-04-22 16:07:26,168 INFO quick_setup reflayer: smoothed nav file is a_at_refsm.asc 2014-04-22 16:07:26,169 INFO quick_adcp importing numpy 2014-04-22 16:07:26,178 INFO quick_adcp importing matplotlib 2014-04-22 16:07:26,249 DEBUG quick_mpl in Q_mpl 2014-04-22 16:07:26,249 INFO quick_adcp ===================================================== 2014-04-22 16:07:26,249 INFO quick_adcp command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb 2014-04-22 16:07:26,249 INFO quick_adcp cwd is /home/data/AT26_13/proc/os75nb about to run these steps: - editsetup - scandata - avg_and_load - setflags - getnav - get_headcorr - rotate - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - apply_edit - navsteps - lst_temp - lst_npings - calib - matfiles - find_pflags 2014-04-22 16:07:26,249 INFO quick_adcp original fix file is a_at.gps 2014-04-22 16:07:26,249 INFO quick_setup reflayer: ref_method already defined (refsm) 2014-04-22 16:07:26,249 INFO quick_setup reflayer: reference method = refsm 2014-04-22 16:07:26,249 INFO quick_setup reflayer: smoothed nav file is a_at_refsm.asc 2014-04-22 16:07:26,249 DEBUG quick_asect extracting matlab files for os75, nb pings 2014-04-22 16:07:26,257 DEBUG quick_setup data directory: /home/data/AT26_13/raw/os75 2014-04-22 16:07:26,258 INFO quick_setup found 280 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/AT26_13/raw/os75/*.raw" 2014-04-22 16:07:26,259 DEBUG quick_setup found 280 files from original filelist 2014-04-22 16:07:26,259 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/AT26_13/raw/os75/at2014_088_54537.raw ... 2014-04-22 16:07:26,260 DEBUG quick_adcp Tue Apr 22 16:07:26 2014 running quick_adcp.py as follows: --cntfile /home/data/AT26_13/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 28 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2014 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgpath /home/data/AT26_13/proc/os75nb/config cntfile /home/data/AT26_13/proc/os75nb/os75nb_qpy.cnt commands None configtype python cruisename AT26_13 data_def vmadcp.def datadir /home/data/AT26_13/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/AT26_13/raw/os75/at2014_088_54537.raw', '/home/data/AT26_13/raw/os75/at2014_088_57600.raw', '/home/data/AT26_13/raw/os75/at2014_088_64800.raw', '/home/data/AT26_13/raw/os75/at2014_088_72000.raw', '/home/data/AT26_13/raw/os75/at2014_088_79200.raw', '/home/data/AT26_13/raw/os75/at2014_089_00000.raw', '/home/data/AT26_13/raw/os75/at2014_089_07200.raw', '/home/data/AT26_13/raw/os75/at2014_089_14400.raw', '/home/data/AT26_13/raw/os75/at2014_089_21600.raw', '/home/data/AT26_13/raw/os75/at2014_089_28800.raw', '/home/data/AT26_13/raw/os75/at2014_089_36000.raw', '/home/data/AT26_13/raw/os75/at2014_089_43200.raw', '/home/data/AT26_13/raw/os75/at2014_089_47186.raw', '/home/data/AT26_13/raw/os75/at2014_089_50400.raw', '/home/data/AT26_13/raw/os75/at2014_089_57600.raw', '/home/data/AT26_13/raw/os75/at2014_089_64800.raw', '/home/data/AT26_13/raw/os75/at2014_089_72000.raw', '/home/data/AT26_13/raw/os75/at2014_089_79200.raw', '/home/data/AT26_13/raw/os75/at2014_090_00000.raw', '/home/data/AT26_13/raw/os75/at2014_090_07200.raw', '/home/data/AT26_13/raw/os75/at2014_090_14400.raw', '/home/data/AT26_13/raw/os75/at2014_090_21600.raw', '/home/data/AT26_13/raw/os75/at2014_090_28800.raw', '/home/data/AT26_13/raw/os75/at2014_090_36000.raw', '/home/data/AT26_13/raw/os75/at2014_090_43200.raw', '/home/data/AT26_13/raw/os75/at2014_090_50400.raw', '/home/data/AT26_13/raw/os75/at2014_090_57600.raw', '/home/data/AT26_13/raw/os75/at2014_090_64800.raw', '/home/data/AT26_13/raw/os75/at2014_090_72000.raw', '/home/data/AT26_13/raw/os75/at2014_090_79200.raw', '/home/data/AT26_13/raw/os75/at2014_091_00000.raw', '/home/data/AT26_13/raw/os75/at2014_091_07200.raw', '/home/data/AT26_13/raw/os75/at2014_091_14400.raw', '/home/data/AT26_13/raw/os75/at2014_091_21600.raw', '/home/data/AT26_13/raw/os75/at2014_091_28800.raw', '/home/data/AT26_13/raw/os75/at2014_091_36000.raw', '/home/data/AT26_13/raw/os75/at2014_091_43200.raw', '/home/data/AT26_13/raw/os75/at2014_091_50400.raw', '/home/data/AT26_13/raw/os75/at2014_091_57600.raw', '/home/data/AT26_13/raw/os75/at2014_091_64800.raw', '/home/data/AT26_13/raw/os75/at2014_091_72000.raw', '/home/data/AT26_13/raw/os75/at2014_091_79200.raw', '/home/data/AT26_13/raw/os75/at2014_092_00000.raw', '/home/data/AT26_13/raw/os75/at2014_092_07200.raw', '/home/data/AT26_13/raw/os75/at2014_092_14400.raw', '/home/data/AT26_13/raw/os75/at2014_092_21600.raw', '/home/data/AT26_13/raw/os75/at2014_092_28800.raw', '/home/data/AT26_13/raw/os75/at2014_092_36000.raw', '/home/data/AT26_13/raw/os75/at2014_092_43200.raw', '/home/data/AT26_13/raw/os75/at2014_092_50400.raw', '/home/data/AT26_13/raw/os75/at2014_092_57600.raw', '/home/data/AT26_13/raw/os75/at2014_092_64800.raw', '/home/data/AT26_13/raw/os75/at2014_092_72000.raw', '/home/data/AT26_13/raw/os75/at2014_092_79200.raw', '/home/data/AT26_13/raw/os75/at2014_093_00000.raw', '/home/data/AT26_13/raw/os75/at2014_093_07200.raw', '/home/data/AT26_13/raw/os75/at2014_093_14400.raw', '/home/data/AT26_13/raw/os75/at2014_093_21600.raw', '/home/data/AT26_13/raw/os75/at2014_093_28800.raw', '/home/data/AT26_13/raw/os75/at2014_093_36000.raw', '/home/data/AT26_13/raw/os75/at2014_093_43200.raw', '/home/data/AT26_13/raw/os75/at2014_093_50400.raw', '/home/data/AT26_13/raw/os75/at2014_093_57600.raw', '/home/data/AT26_13/raw/os75/at2014_093_64800.raw', '/home/data/AT26_13/raw/os75/at2014_093_72000.raw', '/home/data/AT26_13/raw/os75/at2014_093_79200.raw', '/home/data/AT26_13/raw/os75/at2014_094_00000.raw', '/home/data/AT26_13/raw/os75/at2014_094_07200.raw', '/home/data/AT26_13/raw/os75/at2014_094_14400.raw', '/home/data/AT26_13/raw/os75/at2014_094_21600.raw', '/home/data/AT26_13/raw/os75/at2014_094_28800.raw', '/home/data/AT26_13/raw/os75/at2014_094_36000.raw', '/home/data/AT26_13/raw/os75/at2014_094_43200.raw', '/home/data/AT26_13/raw/os75/at2014_094_50400.raw', '/home/data/AT26_13/raw/os75/at2014_094_57600.raw', '/home/data/AT26_13/raw/os75/at2014_094_64800.raw', '/home/data/AT26_13/raw/os75/at2014_094_72000.raw', '/home/data/AT26_13/raw/os75/at2014_094_79200.raw', '/home/data/AT26_13/raw/os75/at2014_095_00000.raw', '/home/data/AT26_13/raw/os75/at2014_095_07200.raw', '/home/data/AT26_13/raw/os75/at2014_095_14400.raw', '/home/data/AT26_13/raw/os75/at2014_095_21600.raw', '/home/data/AT26_13/raw/os75/at2014_095_28800.raw', '/home/data/AT26_13/raw/os75/at2014_095_36000.raw', '/home/data/AT26_13/raw/os75/at2014_095_43200.raw', '/home/data/AT26_13/raw/os75/at2014_095_50400.raw', '/home/data/AT26_13/raw/os75/at2014_095_57600.raw', '/home/data/AT26_13/raw/os75/at2014_095_64800.raw', '/home/data/AT26_13/raw/os75/at2014_095_72000.raw', '/home/data/AT26_13/raw/os75/at2014_095_79200.raw', '/home/data/AT26_13/raw/os75/at2014_096_00000.raw', '/home/data/AT26_13/raw/os75/at2014_096_07200.raw', '/home/data/AT26_13/raw/os75/at2014_096_14400.raw', '/home/data/AT26_13/raw/os75/at2014_096_21600.raw', '/home/data/AT26_13/raw/os75/at2014_096_28800.raw', '/home/data/AT26_13/raw/os75/at2014_096_36000.raw', '/home/data/AT26_13/raw/os75/at2014_096_43200.raw', '/home/data/AT26_13/raw/os75/at2014_096_50400.raw', '/home/data/AT26_13/raw/os75/at2014_096_57600.raw', '/home/data/AT26_13/raw/os75/at2014_096_64800.raw', '/home/data/AT26_13/raw/os75/at2014_096_72000.raw', '/home/data/AT26_13/raw/os75/at2014_096_79200.raw', '/home/data/AT26_13/raw/os75/at2014_097_00000.raw', '/home/data/AT26_13/raw/os75/at2014_097_07200.raw', '/home/data/AT26_13/raw/os75/at2014_097_14400.raw', '/home/data/AT26_13/raw/os75/at2014_097_21600.raw', '/home/data/AT26_13/raw/os75/at2014_097_28800.raw', '/home/data/AT26_13/raw/os75/at2014_097_36000.raw', '/home/data/AT26_13/raw/os75/at2014_097_43200.raw', '/home/data/AT26_13/raw/os75/at2014_097_50400.raw', '/home/data/AT26_13/raw/os75/at2014_097_57600.raw', '/home/data/AT26_13/raw/os75/at2014_097_64800.raw', '/home/data/AT26_13/raw/os75/at2014_097_72000.raw', '/home/data/AT26_13/raw/os75/at2014_097_79200.raw', '/home/data/AT26_13/raw/os75/at2014_098_00000.raw', '/home/data/AT26_13/raw/os75/at2014_098_07200.raw', '/home/data/AT26_13/raw/os75/at2014_098_14400.raw', '/home/data/AT26_13/raw/os75/at2014_098_21600.raw', '/home/data/AT26_13/raw/os75/at2014_098_28800.raw', '/home/data/AT26_13/raw/os75/at2014_098_36000.raw', '/home/data/AT26_13/raw/os75/at2014_098_43200.raw', '/home/data/AT26_13/raw/os75/at2014_098_50400.raw', '/home/data/AT26_13/raw/os75/at2014_098_57600.raw', '/home/data/AT26_13/raw/os75/at2014_098_64800.raw', '/home/data/AT26_13/raw/os75/at2014_098_72000.raw', '/home/data/AT26_13/raw/os75/at2014_098_79200.raw', '/home/data/AT26_13/raw/os75/at2014_099_00000.raw', '/home/data/AT26_13/raw/os75/at2014_099_07200.raw', '/home/data/AT26_13/raw/os75/at2014_099_14400.raw', '/home/data/AT26_13/raw/os75/at2014_099_21600.raw', '/home/data/AT26_13/raw/os75/at2014_099_28800.raw', '/home/data/AT26_13/raw/os75/at2014_099_36000.raw', '/home/data/AT26_13/raw/os75/at2014_099_43200.raw', '/home/data/AT26_13/raw/os75/at2014_099_50400.raw', '/home/data/AT26_13/raw/os75/at2014_099_57600.raw', '/home/data/AT26_13/raw/os75/at2014_099_64800.raw', '/home/data/AT26_13/raw/os75/at2014_099_72000.raw', '/home/data/AT26_13/raw/os75/at2014_099_79200.raw', '/home/data/AT26_13/raw/os75/at2014_100_00000.raw', '/home/data/AT26_13/raw/os75/at2014_100_07200.raw', '/home/data/AT26_13/raw/os75/at2014_100_14400.raw', '/home/data/AT26_13/raw/os75/at2014_100_21600.raw', '/home/data/AT26_13/raw/os75/at2014_100_28800.raw', '/home/data/AT26_13/raw/os75/at2014_100_36000.raw', '/home/data/AT26_13/raw/os75/at2014_100_43200.raw', '/home/data/AT26_13/raw/os75/at2014_100_50400.raw', '/home/data/AT26_13/raw/os75/at2014_100_57600.raw', '/home/data/AT26_13/raw/os75/at2014_100_64800.raw', '/home/data/AT26_13/raw/os75/at2014_100_72000.raw', '/home/data/AT26_13/raw/os75/at2014_100_79200.raw', '/home/data/AT26_13/raw/os75/at2014_101_00000.raw', '/home/data/AT26_13/raw/os75/at2014_101_07200.raw', '/home/data/AT26_13/raw/os75/at2014_101_14400.raw', '/home/data/AT26_13/raw/os75/at2014_101_21600.raw', '/home/data/AT26_13/raw/os75/at2014_101_28800.raw', '/home/data/AT26_13/raw/os75/at2014_101_36000.raw', '/home/data/AT26_13/raw/os75/at2014_101_43200.raw', '/home/data/AT26_13/raw/os75/at2014_101_50400.raw', '/home/data/AT26_13/raw/os75/at2014_101_57600.raw', '/home/data/AT26_13/raw/os75/at2014_101_64800.raw', '/home/data/AT26_13/raw/os75/at2014_101_72000.raw', '/home/data/AT26_13/raw/os75/at2014_101_79200.raw', '/home/data/AT26_13/raw/os75/at2014_102_00000.raw', '/home/data/AT26_13/raw/os75/at2014_102_07200.raw', '/home/data/AT26_13/raw/os75/at2014_102_14400.raw', '/home/data/AT26_13/raw/os75/at2014_102_21600.raw', '/home/data/AT26_13/raw/os75/at2014_102_28800.raw', '/home/data/AT26_13/raw/os75/at2014_102_36000.raw', '/home/data/AT26_13/raw/os75/at2014_102_43200.raw', '/home/data/AT26_13/raw/os75/at2014_102_50400.raw', '/home/data/AT26_13/raw/os75/at2014_102_57600.raw', '/home/data/AT26_13/raw/os75/at2014_102_64800.raw', '/home/data/AT26_13/raw/os75/at2014_102_72000.raw', '/home/data/AT26_13/raw/os75/at2014_102_79200.raw', '/home/data/AT26_13/raw/os75/at2014_103_00000.raw', '/home/data/AT26_13/raw/os75/at2014_103_07200.raw', '/home/data/AT26_13/raw/os75/at2014_103_14400.raw', '/home/data/AT26_13/raw/os75/at2014_103_21600.raw', '/home/data/AT26_13/raw/os75/at2014_103_28800.raw', '/home/data/AT26_13/raw/os75/at2014_103_36000.raw', '/home/data/AT26_13/raw/os75/at2014_103_43200.raw', '/home/data/AT26_13/raw/os75/at2014_103_50400.raw', '/home/data/AT26_13/raw/os75/at2014_103_57600.raw', '/home/data/AT26_13/raw/os75/at2014_103_64800.raw', '/home/data/AT26_13/raw/os75/at2014_103_72000.raw', '/home/data/AT26_13/raw/os75/at2014_103_79200.raw', '/home/data/AT26_13/raw/os75/at2014_104_00000.raw', '/home/data/AT26_13/raw/os75/at2014_104_07200.raw', '/home/data/AT26_13/raw/os75/at2014_104_14400.raw', '/home/data/AT26_13/raw/os75/at2014_104_21600.raw', '/home/data/AT26_13/raw/os75/at2014_104_28800.raw', '/home/data/AT26_13/raw/os75/at2014_104_36000.raw', '/home/data/AT26_13/raw/os75/at2014_104_43200.raw', '/home/data/AT26_13/raw/os75/at2014_104_50400.raw', '/home/data/AT26_13/raw/os75/at2014_104_57600.raw', '/home/data/AT26_13/raw/os75/at2014_104_64800.raw', '/home/data/AT26_13/raw/os75/at2014_104_72000.raw', '/home/data/AT26_13/raw/os75/at2014_104_79200.raw', '/home/data/AT26_13/raw/os75/at2014_105_00000.raw', '/home/data/AT26_13/raw/os75/at2014_105_07200.raw', '/home/data/AT26_13/raw/os75/at2014_105_14400.raw', '/home/data/AT26_13/raw/os75/at2014_105_21600.raw', '/home/data/AT26_13/raw/os75/at2014_105_28800.raw', '/home/data/AT26_13/raw/os75/at2014_105_36000.raw', '/home/data/AT26_13/raw/os75/at2014_105_43200.raw', '/home/data/AT26_13/raw/os75/at2014_105_50400.raw', '/home/data/AT26_13/raw/os75/at2014_105_57600.raw', '/home/data/AT26_13/raw/os75/at2014_105_64800.raw', '/home/data/AT26_13/raw/os75/at2014_105_72000.raw', '/home/data/AT26_13/raw/os75/at2014_105_79200.raw', '/home/data/AT26_13/raw/os75/at2014_106_00000.raw', '/home/data/AT26_13/raw/os75/at2014_106_07200.raw', '/home/data/AT26_13/raw/os75/at2014_106_14400.raw', '/home/data/AT26_13/raw/os75/at2014_106_21600.raw', '/home/data/AT26_13/raw/os75/at2014_106_28800.raw', '/home/data/AT26_13/raw/os75/at2014_106_36000.raw', '/home/data/AT26_13/raw/os75/at2014_106_43200.raw', '/home/data/AT26_13/raw/os75/at2014_106_50400.raw', '/home/data/AT26_13/raw/os75/at2014_106_57600.raw', '/home/data/AT26_13/raw/os75/at2014_106_64800.raw', '/home/data/AT26_13/raw/os75/at2014_106_72000.raw', '/home/data/AT26_13/raw/os75/at2014_106_79200.raw', '/home/data/AT26_13/raw/os75/at2014_107_00000.raw', '/home/data/AT26_13/raw/os75/at2014_107_07200.raw', '/home/data/AT26_13/raw/os75/at2014_107_14400.raw', '/home/data/AT26_13/raw/os75/at2014_107_21600.raw', '/home/data/AT26_13/raw/os75/at2014_107_28800.raw', '/home/data/AT26_13/raw/os75/at2014_107_36000.raw', '/home/data/AT26_13/raw/os75/at2014_107_43200.raw', '/home/data/AT26_13/raw/os75/at2014_107_50400.raw', '/home/data/AT26_13/raw/os75/at2014_107_57600.raw', '/home/data/AT26_13/raw/os75/at2014_107_64800.raw', '/home/data/AT26_13/raw/os75/at2014_107_72000.raw', '/home/data/AT26_13/raw/os75/at2014_107_79200.raw', '/home/data/AT26_13/raw/os75/at2014_108_00000.raw', '/home/data/AT26_13/raw/os75/at2014_108_07200.raw', '/home/data/AT26_13/raw/os75/at2014_108_14400.raw', '/home/data/AT26_13/raw/os75/at2014_108_21600.raw', '/home/data/AT26_13/raw/os75/at2014_108_28800.raw', '/home/data/AT26_13/raw/os75/at2014_108_36000.raw', '/home/data/AT26_13/raw/os75/at2014_108_43200.raw', '/home/data/AT26_13/raw/os75/at2014_108_50400.raw', '/home/data/AT26_13/raw/os75/at2014_108_57600.raw', '/home/data/AT26_13/raw/os75/at2014_108_64800.raw', '/home/data/AT26_13/raw/os75/at2014_108_72000.raw', '/home/data/AT26_13/raw/os75/at2014_108_79200.raw', '/home/data/AT26_13/raw/os75/at2014_109_00000.raw', '/home/data/AT26_13/raw/os75/at2014_109_07200.raw', '/home/data/AT26_13/raw/os75/at2014_109_14400.raw', '/home/data/AT26_13/raw/os75/at2014_109_21600.raw', '/home/data/AT26_13/raw/os75/at2014_109_28800.raw', '/home/data/AT26_13/raw/os75/at2014_109_36000.raw', '/home/data/AT26_13/raw/os75/at2014_109_43200.raw', '/home/data/AT26_13/raw/os75/at2014_109_50400.raw', '/home/data/AT26_13/raw/os75/at2014_109_57600.raw', '/home/data/AT26_13/raw/os75/at2014_109_64800.raw', '/home/data/AT26_13/raw/os75/at2014_109_72000.raw', '/home/data/AT26_13/raw/os75/at2014_109_79200.raw', '/home/data/AT26_13/raw/os75/at2014_110_00000.raw', '/home/data/AT26_13/raw/os75/at2014_110_07200.raw', '/home/data/AT26_13/raw/os75/at2014_110_14400.raw', '/home/data/AT26_13/raw/os75/at2014_110_21600.raw', '/home/data/AT26_13/raw/os75/at2014_110_28800.raw', '/home/data/AT26_13/raw/os75/at2014_110_36000.raw', '/home/data/AT26_13/raw/os75/at2014_110_43200.raw', '/home/data/AT26_13/raw/os75/at2014_110_50400.raw', '/home/data/AT26_13/raw/os75/at2014_110_57600.raw', '/home/data/AT26_13/raw/os75/at2014_110_64800.raw', '/home/data/AT26_13/raw/os75/at2014_110_72000.raw', '/home/data/AT26_13/raw/os75/at2014_110_79200.raw', '/home/data/AT26_13/raw/os75/at2014_111_00000.raw', '/home/data/AT26_13/raw/os75/at2014_111_07200.raw', '/home/data/AT26_13/raw/os75/at2014_111_14400.raw', '/home/data/AT26_13/raw/os75/at2014_111_21600.raw', '/home/data/AT26_13/raw/os75/at2014_111_28800.raw', '/home/data/AT26_13/raw/os75/at2014_111_36000.raw', '/home/data/AT26_13/raw/os75/at2014_111_43200.raw', '/home/data/AT26_13/raw/os75/at2014_111_45440.raw', '/home/data/AT26_13/raw/os75/at2014_111_50400.raw', '/home/data/AT26_13/raw/os75/at2014_111_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 28 fixfile a_at.gps frequency 75 gbin_style python gbindirbase /home/data/AT26_13/gbin hcorr_inst phins help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 300 max_search_depth 2000 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 overview False pgmin 50 ping_headcorr False pingtype nb post_headcorr None printformats png proc_engine python proc_yearbase 2014 progdir /home/currents/programs py_gbindirbase /home/data/AT26_13/gbin rawstd_cutoff None ref_method refsm rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_at_refsm.asc sonar os75nb steps2rerun timeout_secs 86400 tips False top_plotbin 1 ub_type 1920 update_gbin False use_refsm False use_smoothr False use_uvship False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2014 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp lst_npings calib matfiles find_pflags 2014-04-22 16:07:26,260 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:26,260 INFO quick_adcp step 1: set up editing files 2014-04-22 16:07:26,260 DEBUG quick_run executing commands from /home/data/AT26_13/proc/os75nb/edit 2014-04-22 16:07:26,260 DEBUG quick_run setup.m exists. not replacing 2014-04-22 16:07:26,260 DEBUG quick_run asetup.m exists. not replacing 2014-04-22 16:07:26,260 DEBUG quick_run aflagit_setup.m exists. not replacing 2014-04-22 16:07:26,260 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 clear_range /* reset range */ clear_all_bits /* clear flags except pg_min*/ clear_bad_profile /* reset access vars lgb */ time_ranges: all 2014-04-22 16:07:26,260 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:26,260 INFO quick_adcp step 2: scan files for time range 2014-04-22 16:07:26,260 INFO quick_adcp about to run numpy scan, requiring python gbins 2014-04-22 16:07:26,260 DEBUG quick_npy Starting: scanping 2014-04-22 16:07:26,455 DEBUG quick_npy Ending: scanping 2014-04-22 16:07:26,455 DEBUG quick_subs start_end_time 2014/03/30 15:09:02 to 2014/03/30 15:19:13 2014-04-22 16:07:26,455 DEBUG quick_subs dd0: 88.631273 dd1: 88.638345 2014-04-22 16:07:26,455 INFO quick_adcp in quick_adcp.py: after scan; look for database times in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:26,456 INFO quick_adcp looking for database with adcpdb/a_at*.blk 2014-04-22 16:07:26,456 INFO quick_adcp database found: listing blocks 2014-04-22 16:07:26,456 DEBUG quick_subs removing a_atdir.blk 2014-04-22 16:07:26,456 DEBUG quick_subs about to run mkblkdir 2014-04-22 16:07:26,456 DEBUG quick_subs database still exists; rerunning mkdirblk 2014-04-22 16:07:26,456 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2014-04-22 16:07:26,467 DEBUG quick_subs database passes. 2014-04-22 16:07:26,468 DEBUG quick_subs start_end_time 2014/03/30 15:14:01 to 2014/04/22 15:49:00 2014-04-22 16:07:26,468 DEBUG quick_subs dd0: 88.634734 dd1: 111.659028 2014-04-22 16:07:26,468 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2014-04-22 16:07:26,468 DEBUG quick_adcp origdb_time_range is 2014/03/30 15:14:01 to 2014/04/22 15:49:00 2014-04-22 16:07:26,468 DEBUG quick_adcp (88.634734 to 111.659028) 2014-04-22 16:07:26,468 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:26,468 INFO quick_adcp step 3: generate averaged data... 2014-04-22 16:07:26,468 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2014-04-22 16:07:26,468 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:26,468 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/load 2014-04-22 16:07:26,468 DEBUG quick_setup running python command "run_pingavg_npy" 2014-04-22 16:07:26,468 DEBUG quick_npy Starting: pingavg 2014-04-22 16:07:26,470 DEBUG quick_npy singleping editing parameters: 2014-04-22 16:07:26,470 DEBUG quick_npy bigtarget_mab_window : 11 2014-04-22 16:07:26,470 DEBUG quick_npy rl_endbin : 20 2014-04-22 16:07:26,470 DEBUG quick_npy max_search_depth : 2000 2014-04-22 16:07:26,470 DEBUG quick_npy cor_cutoff : 120 2014-04-22 16:07:26,470 DEBUG quick_npy ampfilt : 40 2014-04-22 16:07:26,470 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2014-04-22 16:07:26,470 DEBUG quick_npy rl_startbin : 2 2014-04-22 16:07:26,470 DEBUG quick_npy ecutoff : 0.800000 2014-04-22 16:07:26,470 DEBUG quick_npy refavg_valcutoff : 1 2014-04-22 16:07:26,470 DEBUG quick_npy weakprof_percent : 30 2014-04-22 16:07:26,470 DEBUG quick_npy bigtarget_ampthresh : 55 2014-04-22 16:07:26,470 DEBUG quick_npy xducerxy is None 2014-04-22 16:07:26,476 INFO pingavg Pingavg.run for time range 111.666672 to 111.669598 2014-04-22 16:07:26,496 DEBUG pingavg Chunk 1 of 1, 111.666672 to 111.669598 2014-04-22 16:07:26,496 DEBUG pingavg Nothing written 2014-04-22 16:07:26,496 DEBUG quick_npy wrote 0 averages 2014-04-22 16:07:26,496 DEBUG quick_npy Ending: pingavg 2014-04-22 16:07:26,496 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:26,496 INFO quick_adcp step 4: load averaged data (to database) 2014-04-22 16:07:26,497 DEBUG quick_subs in del_overlapping 2014-04-22 16:07:26,497 DEBUG quick_subs lastblock: 2014-04-22 16:07:26,497 DEBUG quick_subs 23 2014-04-22 16:07:26,497 DEBUG quick_subs lastcmd: 2014-04-22 16:07:26,497 DEBUG quick_subs 23 2014-04-22 16:07:26,497 DEBUG quick_subs delblks: 2014-04-22 16:07:26,497 DEBUG quick_subs [23] 2014-04-22 16:07:26,497 DEBUG quick_subs loadblks: 2014-04-22 16:07:26,497 DEBUG quick_subs [23] 2014-04-22 16:07:26,497 DEBUG quick_subs about to run mkblkdir 2014-04-22 16:07:26,497 DEBUG quick_subs database still exists; rerunning mkdirblk 2014-04-22 16:07:26,497 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2014-04-22 16:07:26,508 DEBUG quick_subs database passes. 2014-04-22 16:07:26,509 DEBUG quick_subs start_end_time 2014/03/30 15:14:01 to 2014/04/22 13:09:00 2014-04-22 16:07:26,509 DEBUG quick_subs dd0: 88.634734 dd1: 111.547917 2014-04-22 16:07:26,509 DEBUG quick_run [23] 2014-04-22 16:07:26,509 DEBUG quick_run cmdlist 2014-04-22 16:07:26,509 DEBUG quick_run ['./ens_blk023.cmd'] 2014-04-22 16:07:26,510 INFO quick_run Warning: 1 files will be loaded; 23 already exist 2014-04-22 16:07:26,510 INFO quick_run Tue Apr 22 16:07:26 2014 2014-04-22 16:07:26,510 INFO quick_run about to load uhdas files 2014-04-22 16:07:26,511 INFO quick_run /home/data/AT26_13/raw/os75/at2014_088_54537.raw /home/data/AT26_13/raw/os75/at2014_088_57600.raw /home/data/AT26_13/raw/os75/at2014_088_64800.raw /home/data/AT26_13/raw/os75/at2014_088_72000.raw /home/data/AT26_13/raw/os75/at2014_088_79200.raw ... 2014-04-22 16:07:26,511 DEBUG quick_setup load/ldcodas.tmp exists 2014-04-22 16:07:26,511 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:26,511 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/load 2014-04-22 16:07:26,511 DEBUG quick_setup running python command "ldcodas" 2014-04-22 16:07:26,511 DEBUG quick_subs filling "thisload" timerange 2014-04-22 16:07:26,512 DEBUG quick_subs in ldcodas 2014-04-22 16:07:26,512 DEBUG quick_subs cmdlist: 2014-04-22 16:07:26,512 DEBUG quick_subs ['./ens_blk023.cmd'] 2014-04-22 16:07:26,512 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2014 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk023.cmd 2014-04-22 16:07:26,512 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2014-04-22 16:07:26,523 DEBUG quick_subs removing a_atdir.blk 2014-04-22 16:07:26,524 DEBUG quick_subs about to run mkblkdir 2014-04-22 16:07:26,524 DEBUG quick_subs database still exists; rerunning mkdirblk 2014-04-22 16:07:26,524 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2014-04-22 16:07:26,536 DEBUG quick_subs database passes. 2014-04-22 16:07:26,536 DEBUG quick_subs start_end_time 2014/03/30 15:14:01 to 2014/04/22 16:03:59 2014-04-22 16:07:26,536 DEBUG quick_subs dd0: 88.634734 dd1: 111.669433 2014-04-22 16:07:26,537 INFO quick_adcp --------------------- 2014-04-22 16:07:26,537 INFO quick_adcp loaded_time_range is 2014/03/30 15:14:01 to 2014/04/22 16:03:59 2014-04-22 16:07:26,537 INFO quick_adcp (88.634734 to 111.669433) 2014-04-22 16:07:26,537 INFO quick_adcp origdb_time_range is 2014/03/30 15:14:01 to 2014/04/22 15:49:00 2014-04-22 16:07:26,537 INFO quick_adcp (88.634734 to 111.659028) 2014-04-22 16:07:26,537 INFO quick_adcp thisload_time_range is 2014/04/22 13:13:59 to 2014/04/22 16:03:59 2014-04-22 16:07:26,537 INFO quick_adcp (111.551377 to 111.551377) 2014-04-22 16:07:26,537 INFO quick_adcp --------------------- 2014-04-22 16:07:26,538 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:26,538 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/adcpdb 2014-04-22 16:07:26,538 DEBUG quick_setup running python command "lst_conf" 2014-04-22 16:07:26,538 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2014-04-22 16:07:26,538 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2014-04-22 16:07:27,969 DEBUG quick_setup found (in edit/asetup.m): 2014-04-22 16:07:27,969 DEBUG quick_setup config.beamangle is 30 2014-04-22 16:07:27,969 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:27,970 INFO quick_adcp step 5: set up files for gautoedit.py 2014-04-22 16:07:27,970 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2014-04-22 16:07:27,970 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:27,970 INFO quick_adcp step 6: set up files for gautoedit.py 2014-04-22 16:07:27,970 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:27,970 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/edit 2014-04-22 16:07:27,970 DEBUG quick_setup running python command "setflags" 2014-04-22 16:07:27,970 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2014-04-22 16:07:27,970 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2014-04-22 16:07:28,000 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,001 INFO quick_adcp step 7: get navigation 2014-04-22 16:07:28,001 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:28,001 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:28,001 DEBUG quick_setup running python command "catnav" 2014-04-22 16:07:28,008 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2014-04-22 16:07:28,008 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:28,008 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/cal/rotate 2014-04-22 16:07:28,008 DEBUG quick_setup running python command "lst_hdg" 2014-04-22 16:07:28,008 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2014 time_ranges: all 2014-04-22 16:07:28,009 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2014-04-22 16:07:28,040 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,040 INFO quick_adcp step 8: get heading correction 2014-04-22 16:07:28,041 DEBUG quick_run hcorr_inst is phins 2014-04-22 16:07:28,041 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,041 INFO quick_adcp step 9: rotate velocities 2014-04-22 16:07:28,041 DEBUG quick_setup cal/rotate/norotate.tmp exists 2014-04-22 16:07:28,041 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:28,041 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/cal/rotate 2014-04-22 16:07:28,041 DEBUG quick_setup running python command "norotate" 2014-04-22 16:07:28,041 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. */ DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2014/03/30 15:14:01 to 2014/04/22 16:03:59 OPTION_LIST: water_and_bottom_track: year_base= 2014 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2014-04-22 16:07:28,041 DEBUG quick_setup about to run echo "writing dummy rotate file" 2014-04-22 16:07:28,045 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,046 INFO quick_adcp step 10: nav steps: run adcpsect 2014-04-22 16:07:28,046 DEBUG quick_setup nav/as_nav.tmp exists 2014-04-22 16:07:28,046 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:28,046 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:28,046 DEBUG quick_setup running python command "as_nav" 2014-04-22 16:07:28,046 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2014 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2014/03/30 15:14:01 to 2014/04/22 16:03:59 /* the whole time range */ 2014-04-22 16:07:28,047 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2014-04-22 16:07:28,094 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,094 INFO quick_adcp step 11: nav steps: run refabs 2014-04-22 16:07:28,094 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:28,094 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:28,094 DEBUG quick_setup running python command "refabs" 2014-04-22 16:07:28,094 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2014 ensemble_length= 300 gap_tolerance= 10 2014-04-22 16:07:28,095 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2014-04-22 16:07:28,133 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,133 INFO quick_adcp step 12: nav steps: run smoothr for plots 2014-04-22 16:07:28,134 DEBUG quick_setup nav/smoothr.tmp exists 2014-04-22 16:07:28,134 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:28,134 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:28,134 DEBUG quick_setup running python command "smoothr" 2014-04-22 16:07:28,134 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2014-04-22 16:07:28,134 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2014-04-22 16:07:28,289 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,289 INFO quick_adcp step 13: nav steps: smooth navigation 2014-04-22 16:07:28,290 INFO quick_adcp about to run numpy reflayer smoothing, method=refsm 2014-04-22 16:07:28,290 DEBUG quick_npy Starting: refsm 2014-04-22 16:07:28,387 DEBUG nav dtmin = -0.50 dtmax = 0.50 2014-04-22 16:07:28,479 DEBUG quick_npy Ending: refsm 2014-04-22 16:07:28,479 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,479 INFO quick_adcp step 14: nav steps: put smoothed nav into codasdb 2014-04-22 16:07:28,480 DEBUG quick_setup nav/putnav.tmp exists 2014-04-22 16:07:28,480 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:28,480 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:28,480 DEBUG quick_setup running python command "putnav" 2014-04-22 16:07:28,480 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2014 tolerance= 5 navigation_sources: gps end 2014-04-22 16:07:28,480 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2014-04-22 16:07:28,527 INFO quick_adcp plotting navigation 2014-04-22 16:07:28,528 DEBUG quick_mpl Starting plot: nav 2014-04-22 16:07:28,795 DEBUG quick_mpl Ending plot: nav 2014-04-22 16:07:28,795 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:28,795 INFO quick_adcp step 15: nav steps: make reflayer plots 2014-04-22 16:07:28,796 DEBUG quick_mpl Starting plot: refl 2014-04-22 16:07:28,919 DEBUG quick_mplplots found 22.940952 days of data 2014-04-22 16:07:28,919 DEBUG quick_mplplots start day is 88.000000 2014-04-22 16:07:28,919 DEBUG quick_mplplots figures with 2.000000 days per page 2014-04-22 16:07:28,919 DEBUG quick_mplplots printing 12 pages 2014-04-22 16:07:28,919 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2014-04-22 16:07:29,395 DEBUG quick_mpl Ending plot: refl 2014-04-22 16:07:29,395 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:29,395 INFO quick_adcp step 16: find profile flags 2014-04-22 16:07:29,395 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:29,395 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/edit 2014-04-22 16:07:29,395 DEBUG quick_setup running python command "run_autoedit_npy" 2014-04-22 16:07:29,395 DEBUG quick_npy Starting: autoedit 2014-04-22 16:07:29,504 DEBUG pingedit wrote 78 bad bins to abadbin_tmp.asc 2014-04-22 16:07:29,516 DEBUG pingedit wrote 67 bad profiles to abadprf_tmp.asc 2014-04-22 16:07:29,516 DEBUG quick_npy Ending: autoedit 2014-04-22 16:07:29,516 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:29,516 INFO quick_adcp step 17: apply editing 2014-04-22 16:07:29,516 DEBUG quick_run starting in: /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:29,516 DEBUG quick_run executing commands from: edit 2014-04-22 16:07:29,517 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_at abadprf_tmp.asc 2014-04-22 16:07:29,523 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_at abadbin_tmp.asc 2014-04-22 16:07:29,532 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_at 30 2014-04-22 16:07:29,539 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2014-04-22 16:07:29,539 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2014-04-22 16:07:29,571 DEBUG quick_run changing directories back to /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:29,571 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:29,571 INFO quick_adcp step 18: run nav steps 2014-04-22 16:07:29,571 DEBUG quick_setup nav/as_nav.tmp exists 2014-04-22 16:07:29,572 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:29,572 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:29,572 DEBUG quick_setup running python command "as_nav" 2014-04-22 16:07:29,572 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2014 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2014/03/30 15:14:01 to 2014/04/22 16:03:59 /* the whole time range */ 2014-04-22 16:07:29,572 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2014-04-22 16:07:29,615 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:29,616 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:29,616 DEBUG quick_setup running python command "refabs" 2014-04-22 16:07:29,616 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2014 ensemble_length= 300 gap_tolerance= 10 2014-04-22 16:07:29,616 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2014-04-22 16:07:29,655 DEBUG quick_setup nav/smoothr.tmp exists 2014-04-22 16:07:29,656 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:29,656 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:29,656 DEBUG quick_setup running python command "smoothr" 2014-04-22 16:07:29,656 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2014-04-22 16:07:29,656 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2014-04-22 16:07:29,812 DEBUG quick_setup nav/putnav.tmp exists 2014-04-22 16:07:29,812 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:29,812 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:29,812 DEBUG quick_setup running python command "putnav" 2014-04-22 16:07:29,812 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2014 tolerance= 5 navigation_sources: gps end 2014-04-22 16:07:29,813 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2014-04-22 16:07:29,861 DEBUG quick_mpl Starting plot: nav 2014-04-22 16:07:30,137 DEBUG quick_mpl Ending plot: nav 2014-04-22 16:07:30,137 DEBUG quick_mpl Starting plot: refl 2014-04-22 16:07:30,261 DEBUG quick_mplplots found 22.940952 days of data 2014-04-22 16:07:30,261 DEBUG quick_mplplots start day is 88.000000 2014-04-22 16:07:30,261 DEBUG quick_mplplots figures with 2.000000 days per page 2014-04-22 16:07:30,261 DEBUG quick_mplplots printing 12 pages 2014-04-22 16:07:30,261 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2014-04-22 16:07:30,744 DEBUG quick_mpl Ending plot: refl 2014-04-22 16:07:30,744 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:30,744 INFO quick_adcp step 19: plot temperature 2014-04-22 16:07:30,744 DEBUG quick_setup edit/lst_temp.tmp exists 2014-04-22 16:07:30,745 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:30,745 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/edit 2014-04-22 16:07:30,745 DEBUG quick_setup running python command "lst_temp" 2014-04-22 16:07:30,745 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at.tem step_size= 1 year_base= 2014 time_ranges: all 2014-04-22 16:07:30,745 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2014-04-22 16:07:30,774 DEBUG quick_mpl Starting plot: temp 2014-04-22 16:07:30,825 DEBUG quick_mplplots plotting 6635 points 2014-04-22 16:07:31,000 DEBUG quick_mpl Ending plot: temp 2014-04-22 16:07:31,000 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:31,000 INFO quick_adcp step 20: plot numper of pings per ensemble 2014-04-22 16:07:31,001 DEBUG quick_setup edit/lst_npings.tmp exists 2014-04-22 16:07:31,001 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:31,001 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/edit 2014-04-22 16:07:31,001 DEBUG quick_setup running python command "lst_npings" 2014-04-22 16:07:31,001 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at_npings.txt step_size= 1 year_base= 2014 time_ranges: all 2014-04-22 16:07:31,001 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_npings lst_npings.tmp 2014-04-22 16:07:31,029 DEBUG quick_mpl Starting plot: npings 2014-04-22 16:07:31,074 DEBUG quick_mplplots plotting 6635 points 2014-04-22 16:07:31,190 DEBUG quick_mpl Ending plot: npings 2014-04-22 16:07:31,190 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:31,190 INFO quick_adcp step 21: run calibration steps 2014-04-22 16:07:31,191 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2014-04-22 16:07:31,191 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:31,191 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/cal/botmtrk 2014-04-22 16:07:31,191 DEBUG quick_setup running python command "lst_btrk" 2014-04-22 16:07:31,191 DEBUG quick_subs dbname: ../../adcpdb/a_at output: a_at.btm step_size= 1 year_base= 2014 time_ranges: 2014/03/30 15:14:01 to 2014/04/22 16:03:59 /* whole time range */ 2014-04-22 16:07:31,191 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2014-04-22 16:07:31,207 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2014-04-22 16:07:31,207 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:31,207 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/cal/botmtrk 2014-04-22 16:07:31,207 DEBUG quick_setup running python command "refabsbt" 2014-04-22 16:07:31,208 DEBUG quick_subs fix_file_type: simple reference_file: a_at.btm fix_file: ../../nav/a_at.gps output: a_at.ref year_base= 2014 ensemble_length= 300 gap_tolerance= 60 2014-04-22 16:07:31,208 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2014-04-22 16:07:31,242 DEBUG quick_mpl Starting plot: btcal 2014-04-22 16:07:31,635 DEBUG quick_mpl Ending plot: btcal 2014-04-22 16:07:31,635 DEBUG quick_setup nav/as_nav.tmp exists 2014-04-22 16:07:31,636 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:31,636 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/nav 2014-04-22 16:07:31,636 DEBUG quick_setup running python command "as_nav" 2014-04-22 16:07:31,636 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2014 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2014/03/30 15:14:01 to 2014/04/22 16:03:59 /* the whole time range */ 2014-04-22 16:07:31,636 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2014-04-22 16:07:31,678 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2014-04-22 16:07:31,679 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:31,679 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/cal/watertrk 2014-04-22 16:07:31,679 DEBUG quick_setup running python command "timslip" 2014-04-22 16:07:31,679 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_at.gps reference_file: ../../nav/a_at.nav output_file: a_at_7.cal year_base= 2014 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2014-04-22 16:07:31,679 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2014-04-22 16:07:31,697 DEBUG quick_mpl Starting plot: wtcal 2014-04-22 16:07:31,700 DEBUG quick_mplplots Found 134 calibration points 2014-04-22 16:07:32,254 DEBUG quick_mpl Ending plot: wtcal 2014-04-22 16:07:32,254 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:32,254 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/cal/watertrk 2014-04-22 16:07:32,254 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2014-04-22 16:07:32,254 DEBUG quick_npy Starting: guess_xducerxy 2014-04-22 16:07:32,357 DEBUG quick_npy Ending: guess_xducerxy 2014-04-22 16:07:32,357 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:32,357 INFO quick_adcp step 22: extract matlab "allbins" 2014-04-22 16:07:32,357 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2014-04-22 16:07:32,357 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:32,357 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/vector 2014-04-22 16:07:32,357 DEBUG quick_setup running python command "timegrid" 2014-04-22 16:07:32,357 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2014-04-22 16:07:32,363 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:32,363 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/vector 2014-04-22 16:07:32,364 DEBUG quick_setup running python command "as_vect" 2014-04-22 16:07:32,364 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2014-04-22 16:07:32,440 DEBUG quick_asect done making vector matfiles 2014-04-22 16:07:32,441 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:32,441 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/contour 2014-04-22 16:07:32,441 DEBUG quick_setup running python command "timegrid" 2014-04-22 16:07:32,441 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2014-04-22 16:07:32,451 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:32,451 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/contour 2014-04-22 16:07:32,452 DEBUG quick_setup running python command "as_cont" 2014-04-22 16:07:32,452 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2014-04-22 16:07:32,570 DEBUG quick_setup starting in /home/data/AT26_13/proc/os75nb 2014-04-22 16:07:32,571 DEBUG quick_setup executing commands from /home/data/AT26_13/proc/os75nb/contour 2014-04-22 16:07:32,571 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_at 2014-04-22 16:07:32,769 DEBUG quick_asect done running getmat with "allbins" 2014-04-22 16:07:32,769 INFO quick_adcp --------------------------------------------- 2014-04-22 16:07:32,769 INFO quick_adcp step 23: write "cruise_info.txt" 2014-04-22 16:07:32,787 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2014-04-22 16:07:32,787 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2014-04-22 16:07:32,787 DEBUG root matfile is contour/contour_uv.mat 2014-04-22 16:07:32,790 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2014-04-22 16:07:32,790 DEBUG root matfile is vector/vector_uv.mat 2014-04-22 16:07:32,791 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2014-04-22 16:07:32,791 DEBUG root matfile is contour/contour_xy.mat 2014-04-22 16:07:32,791 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2014-04-22 16:07:32,791 DEBUG root matfile is vector/vector_xy.mat 2014-04-22 16:07:32,791 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2014-04-22 16:07:32,791 DEBUG root about to copy file edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2014-04-22 16:07:32,792 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2014-04-22 16:07:32,792 INFO netcdf Using pupynere. 2014-04-22 16:07:32,921 DEBUG root about to copy netcdf file /home/data/AT26_13/proc/os75nb/contour/os75nb.nc to /home/adcp/www/data/os75nb.nc 2014-04-22 16:07:32,928 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75nb.nc 2014-04-22 16:07:32,946 INFO root generating pingstats for os75nb 2014-04-22 16:07:32,946 INFO root Ending quick_adcp.py