2012-05-15 11:28:40,242 DEBUG root about to write control file parameters to --yearbase 2012 --cruisename at20 --configtype python --sonar os75nb --dbname a_at --datatype uhdas --cfgpath /home/data/at20/proc/os75nb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 1000 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2012-05-15 11:28:40,243 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb 2012-05-15 11:28:40,252 DEBUG quick_adcp progdir = /home/currents/programs 2012-05-15 11:28:40,252 DEBUG quick_adcp binos = lnx 2012-05-15 11:28:40,264 DEBUG quick_setup found cruise_info.hcorr (phins, hdg, 0) 2012-05-15 11:28:40,285 INFO quick_adcp importing numpy 2012-05-15 11:28:40,321 INFO quick_adcp importing matplotlib 2012-05-15 11:28:40,479 DEBUG quick_mpl in Q_mpl 2012-05-15 11:28:40,480 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg clearflags ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_guess_xducerxy run_guess_xducerxy_npy run_loaddb run_loadlta_npy run_loadping run_lstconfig run_lsthdg run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd_lta run_pybincmd_uhdas run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanlta_npy run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy run_xducerxy_npy scanping setflags smoothr timegrid timslip ubprint write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2012-05-15 11:28:40,480 INFO quick_adcp cwd is /home/data/at20/proc/os75nb about to run these steps: - editsetup - scandata - avg_and_load - setflags - getnav - get_headcorr - rotate - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - apply_edit - navsteps - lst_temp - calib - matfiles - find_pflags 2012-05-15 11:28:40,480 INFO quick_adcp original fix file is a_at.gps 2012-05-15 11:28:40,481 INFO quick_adcp smoothed nav file is a_at_refsm.asc 2012-05-15 11:28:40,481 DEBUG quick_asect extracting matlab files for os75, nb pings 2012-05-15 11:28:41,536 DEBUG quick_setup data directory: /home/data/at20/raw/os75 2012-05-15 11:28:41,555 INFO quick_setup found 628 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/at20/raw/os75/*.raw" 2012-05-15 11:28:41,570 DEBUG quick_setup found 628 files from original filelist 2012-05-15 11:28:41,571 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/at20/raw/os75/at2012_083_48871.raw ... 2012-05-15 11:28:41,594 DEBUG quick_adcp Tue May 15 11:28:41 2012 running quick_adcp.py as follows: --cntfile /home/data/at20/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 28 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2012 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgpath /home/data/at20/proc/os75nb/config cntfile /home/data/at20/proc/os75nb/os75nb_qpy.cnt commands None configtype python cruisename at20 data_def vmadcp.def datadir /home/data/at20/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/at20/raw/os75/at2012_083_48871.raw', '/home/data/at20/raw/os75/at2012_083_50400.raw', '/home/data/at20/raw/os75/at2012_083_57600.raw', '/home/data/at20/raw/os75/at2012_083_64800.raw', '/home/data/at20/raw/os75/at2012_083_72000.raw', '/home/data/at20/raw/os75/at2012_083_79200.raw', 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'/home/data/at20/raw/os75/at2012_135_33170.raw', '/home/data/at20/raw/os75/at2012_135_36000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 28 fixfile a_at.gps frequency 75 gbin_style python gbindirbase /home/data/at20/gbin hcorr_inst phins help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 300 max_search_depth 1000 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 overview False pgmin 50 ping_headcorr False pingtype nb post_headcorr None printformats png proc_engine python proc_yearbase 2012 progdir /home/currents/programs py_gbindirbase /home/data/at20/gbin rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_at_refsm.asc sonar os75nb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2012 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2012-05-15 11:28:41,594 INFO quick_adcp --------------------------------------------- 2012-05-15 11:28:41,595 INFO quick_adcp step 1: set up editing files 2012-05-15 11:28:41,595 DEBUG quick_run executing commands from /home/data/at20/proc/os75nb/edit 2012-05-15 11:28:41,595 DEBUG quick_run setup.m exists. not replacing 2012-05-15 11:28:41,595 DEBUG quick_run asetup.m exists. not replacing 2012-05-15 11:28:41,596 DEBUG quick_run aflagit_setup.m exists. not replacing 2012-05-15 11:28:41,596 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 clear_range /* reset range */ clear_all_bits /* clear flags except pg_min*/ clear_bad_profile /* reset access vars lgb */ time_ranges: all 2012-05-15 11:28:41,596 INFO quick_adcp --------------------------------------------- 2012-05-15 11:28:41,601 INFO quick_adcp step 2: scan files for time range 2012-05-15 11:28:41,601 INFO quick_adcp about to run numpy scan, requiring python gbins 2012-05-15 11:28:41,601 DEBUG quick_npy Starting: scanping 2012-05-15 11:28:45,550 DEBUG quick_npy Ending: scanping 2012-05-15 11:28:45,564 DEBUG quick_subs start_end_time 2012/03/24 13:34:38 to 2012/03/24 13:50:21 2012-05-15 11:28:45,565 DEBUG quick_subs dd0: 83.565718 dd1: 83.576632 2012-05-15 11:28:45,565 INFO quick_adcp in quick_adcp.py: after scan; look for database times in /home/data/at20/proc/os75nb 2012-05-15 11:28:45,567 INFO quick_adcp looking for database with adcpdb/a_at*.blk 2012-05-15 11:28:45,569 INFO quick_adcp database found: listing blocks 2012-05-15 11:28:45,570 DEBUG quick_subs removing a_atdir.blk 2012-05-15 11:28:45,572 DEBUG quick_subs about to run mkblkdir 2012-05-15 11:28:45,577 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-05-15 11:28:45,578 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2012-05-15 11:28:45,658 DEBUG quick_subs database passes. 2012-05-15 11:28:45,659 DEBUG quick_subs start_end_time 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:28:45,659 DEBUG quick_subs dd0: 83.569120 dd1: 135.381609 2012-05-15 11:28:45,660 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2012-05-15 11:28:45,660 DEBUG quick_adcp origdb_time_range is 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:28:45,660 DEBUG quick_adcp (83.569120 to 135.381609) 2012-05-15 11:28:45,664 INFO quick_adcp --------------------------------------------- 2012-05-15 11:28:45,664 INFO quick_adcp step 3: generate averaged data... 2012-05-15 11:28:45,665 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2012-05-15 11:28:45,665 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:28:45,665 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/load 2012-05-15 11:28:45,665 DEBUG quick_setup running python command "run_pingavg_npy" 2012-05-15 11:28:45,666 DEBUG quick_npy Starting: pingavg 2012-05-15 11:28:45,693 DEBUG quick_npy singleping editing parameters: 2012-05-15 11:28:45,694 DEBUG quick_npy bigtarget_mab_window : 11 2012-05-15 11:28:45,694 DEBUG quick_npy rl_endbin : 20 2012-05-15 11:28:45,694 DEBUG quick_npy max_search_depth : 1000 2012-05-15 11:28:45,694 DEBUG quick_npy cor_cutoff : 120 2012-05-15 11:28:45,694 DEBUG quick_npy ampfilt : 40 2012-05-15 11:28:45,695 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2012-05-15 11:28:45,695 DEBUG quick_npy rl_startbin : 2 2012-05-15 11:28:45,695 DEBUG quick_npy ecutoff : 1 2012-05-15 11:28:45,695 DEBUG quick_npy refavg_valcutoff : 1 2012-05-15 11:28:45,695 DEBUG quick_npy weakprof_percent : 30 2012-05-15 11:28:45,696 DEBUG quick_npy bigtarget_ampthresh : 55 2012-05-15 11:28:45,759 INFO pingavg Pingavg.run for time range 135.333335 to 135.383324 2012-05-15 11:28:46,001 DEBUG pingavg Chunk 1 of 1, 135.333335 to 135.383324 2012-05-15 11:28:46,002 DEBUG pingavg Nothing written 2012-05-15 11:28:46,002 DEBUG quick_npy wrote 0 averages 2012-05-15 11:28:46,025 DEBUG quick_npy Ending: pingavg 2012-05-15 11:28:46,025 INFO quick_adcp --------------------------------------------- 2012-05-15 11:28:46,025 INFO quick_adcp step 4: load averaged data (to database) 2012-05-15 11:28:46,028 DEBUG quick_subs in del_overlapping 2012-05-15 11:28:46,028 DEBUG quick_subs lastblock: 2012-05-15 11:28:46,030 DEBUG quick_subs 50 2012-05-15 11:28:46,031 DEBUG quick_subs lastcmd: 2012-05-15 11:28:46,031 DEBUG quick_subs 50 2012-05-15 11:28:46,031 DEBUG quick_subs delblks: 2012-05-15 11:28:46,031 DEBUG quick_subs [50] 2012-05-15 11:28:46,031 DEBUG quick_subs loadblks: 2012-05-15 11:28:46,032 DEBUG quick_subs [50] 2012-05-15 11:28:46,041 DEBUG quick_subs about to run mkblkdir 2012-05-15 11:28:46,042 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-05-15 11:28:46,042 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2012-05-15 11:28:46,109 DEBUG quick_subs database passes. 2012-05-15 11:28:46,111 DEBUG quick_subs start_end_time 2012/03/24 13:39:32 to 2012/05/14 14:34:34 2012-05-15 11:28:46,111 DEBUG quick_subs dd0: 83.569120 dd1: 134.607338 2012-05-15 11:28:46,112 DEBUG quick_run [50] 2012-05-15 11:28:46,112 DEBUG quick_run cmdlist 2012-05-15 11:28:46,112 DEBUG quick_run ['./ens_blk050.cmd'] 2012-05-15 11:28:46,226 INFO quick_run Warning: 1 files will be loaded; 50 already exist 2012-05-15 11:28:46,227 INFO quick_run Tue May 15 11:28:46 2012 2012-05-15 11:28:46,227 INFO quick_run about to load uhdas files 2012-05-15 11:28:46,227 INFO quick_run /home/data/at20/raw/os75/at2012_083_48871.raw /home/data/at20/raw/os75/at2012_083_50400.raw /home/data/at20/raw/os75/at2012_083_57600.raw /home/data/at20/raw/os75/at2012_083_64800.raw /home/data/at20/raw/os75/at2012_083_72000.raw ... 2012-05-15 11:28:46,227 DEBUG quick_setup load/ldcodas.tmp exists 2012-05-15 11:28:46,237 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:28:46,237 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/load 2012-05-15 11:28:46,237 DEBUG quick_setup running python command "ldcodas" 2012-05-15 11:28:46,237 DEBUG quick_subs filling "thisload" timerange 2012-05-15 11:28:46,250 DEBUG quick_subs in ldcodas 2012-05-15 11:28:46,250 DEBUG quick_subs cmdlist: 2012-05-15 11:28:46,250 DEBUG quick_subs ['./ens_blk050.cmd'] 2012-05-15 11:28:46,250 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2012 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk050.cmd 2012-05-15 11:28:46,251 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2012-05-15 11:28:46,524 DEBUG quick_subs removing a_atdir.blk 2012-05-15 11:28:46,526 DEBUG quick_subs about to run mkblkdir 2012-05-15 11:28:46,527 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-05-15 11:28:46,529 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2012-05-15 11:28:46,598 DEBUG quick_subs database passes. 2012-05-15 11:28:46,600 DEBUG quick_subs start_end_time 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:28:46,600 DEBUG quick_subs dd0: 83.569120 dd1: 135.381609 2012-05-15 11:28:46,601 INFO quick_adcp loaded_time_range is 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:28:46,602 INFO quick_adcp (83.569120 to 135.381609) 2012-05-15 11:28:46,602 INFO quick_adcp origdb_time_range is 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:28:46,602 INFO quick_adcp (83.569120 to 135.381609) 2012-05-15 11:28:46,603 INFO quick_adcp thisload_time_range is 2012/05/14 14:39:34 to 2012/05/15 09:09:31 2012-05-15 11:28:46,604 INFO quick_adcp (134.610810 to 134.610810) 2012-05-15 11:28:46,604 INFO quick_adcp --------------------- 2012-05-15 11:28:46,609 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:28:46,609 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/adcpdb 2012-05-15 11:28:46,609 DEBUG quick_setup running python command "lst_conf" 2012-05-15 11:28:46,609 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2012-05-15 11:28:46,610 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2012-05-15 11:29:23,771 DEBUG quick_setup found (in edit/asetup.m): 2012-05-15 11:29:23,772 DEBUG quick_setup config.beamangle is 30 2012-05-15 11:29:23,772 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:23,772 INFO quick_adcp step 5: set up files for gautoedit.py 2012-05-15 11:29:23,782 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2012-05-15 11:29:23,784 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:23,784 INFO quick_adcp step 6: set up files for gautoedit.py 2012-05-15 11:29:23,784 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:23,785 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/edit 2012-05-15 11:29:23,785 DEBUG quick_setup running python command "setflags" 2012-05-15 11:29:23,788 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2012-05-15 11:29:23,794 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2012-05-15 11:29:24,716 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:24,717 INFO quick_adcp step 7: get navigation 2012-05-15 11:29:24,717 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:24,717 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/nav 2012-05-15 11:29:24,717 DEBUG quick_setup running python command "catnav" 2012-05-15 11:29:25,819 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2012-05-15 11:29:25,819 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:25,820 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/cal/rotate 2012-05-15 11:29:25,820 DEBUG quick_setup running python command "lst_hdg" 2012-05-15 11:29:25,820 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2012 time_ranges: all 2012-05-15 11:29:25,821 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2012-05-15 11:29:26,168 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:26,168 INFO quick_adcp step 8: get heading correction 2012-05-15 11:29:26,169 DEBUG quick_run hcorr_inst is phins 2012-05-15 11:29:26,169 DEBUG quick_mpl Starting plot: hcorr 2012-05-15 11:29:28,670 DEBUG quick_mplplots found 51.812489 days of data 2012-05-15 11:29:28,670 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2012-05-15 11:29:28,670 DEBUG quick_mplplots printing 14 pages 2012-05-15 11:29:32,002 DEBUG quick_mpl Ending plot: hcorr 2012-05-15 11:29:32,003 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:32,003 INFO quick_adcp step 9: rotate velocities 2012-05-15 11:29:32,004 DEBUG quick_setup cal/rotate/norotate.tmp exists 2012-05-15 11:29:32,004 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:32,004 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/cal/rotate 2012-05-15 11:29:32,004 DEBUG quick_setup running python command "norotate" 2012-05-15 11:29:32,013 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. */ DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2012/03/24 13:39:32 to 2012/05/15 09:09:31 OPTION_LIST: water_and_bottom_track: year_base= 2012 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2012-05-15 11:29:32,014 DEBUG quick_setup about to run echo "writing dummy rotate file" 2012-05-15 11:29:32,034 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:32,034 INFO quick_adcp step 10: nav steps: run adcpsect 2012-05-15 11:29:32,035 DEBUG quick_setup nav/as_nav.tmp exists 2012-05-15 11:29:32,035 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:32,035 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/nav 2012-05-15 11:29:32,035 DEBUG quick_setup running python command "as_nav" 2012-05-15 11:29:32,036 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2012 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/03/24 13:39:32 to 2012/05/15 09:09:31 /* the whole time range */ 2012-05-15 11:29:32,036 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2012-05-15 11:29:33,145 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:33,145 INFO quick_adcp step 11: nav steps: run refabs 2012-05-15 11:29:33,146 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:33,146 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/nav 2012-05-15 11:29:33,146 DEBUG quick_setup running python command "refabs" 2012-05-15 11:29:33,146 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2012 ensemble_length= 300 gap_tolerance= 10 2012-05-15 11:29:33,147 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2012-05-15 11:29:33,927 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:33,928 INFO quick_adcp step 12: nav steps: run smoothr for plots 2012-05-15 11:29:33,928 DEBUG quick_setup nav/smoothr.tmp exists 2012-05-15 11:29:33,928 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:33,929 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/nav 2012-05-15 11:29:33,929 DEBUG quick_setup running python command "smoothr" 2012-05-15 11:29:33,929 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-05-15 11:29:33,930 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2012-05-15 11:29:37,196 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:37,197 INFO quick_adcp step 13: nav steps: smooth navigation 2012-05-15 11:29:37,197 INFO quick_adcp about to run numpy refsm 2012-05-15 11:29:37,197 DEBUG quick_npy Starting: refsm 2012-05-15 11:29:39,626 DEBUG nav dtmin = -0.50 dtmax = 4.10 2012-05-15 11:29:41,683 DEBUG quick_npy Ending: refsm 2012-05-15 11:29:41,683 INFO quick_adcp --------------------------------------------- 2012-05-15 11:29:41,683 INFO quick_adcp step 14: nav steps: put smoothed nav into codasdb 2012-05-15 11:29:41,684 DEBUG quick_setup nav/putnav.tmp exists 2012-05-15 11:29:41,684 DEBUG quick_setup starting in /home/data/at20/proc/os75nb 2012-05-15 11:29:41,684 DEBUG quick_setup executing commands from /home/data/at20/proc/os75nb/nav 2012-05-15 11:29:41,685 DEBUG quick_setup running python command "putnav" 2012-05-15 11:29:41,685 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2012 tolerance= 5 navigation_sources: gps end 2012-05-15 11:29:41,685 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp