2012-05-15 11:25:40,355 DEBUG root about to write control file parameters to --yearbase 2012 --cruisename at20 --configtype python --sonar os75bb --dbname a_at --datatype uhdas --cfgpath /home/data/at20/proc/os75bb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 1000 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2012-05-15 11:25:40,356 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75bb 2012-05-15 11:25:40,358 DEBUG quick_adcp progdir = /home/currents/programs 2012-05-15 11:25:40,358 DEBUG quick_adcp binos = lnx 2012-05-15 11:25:40,372 DEBUG quick_setup found cruise_info.hcorr (phins, hdg, 0) 2012-05-15 11:25:40,376 INFO quick_adcp importing numpy 2012-05-15 11:25:40,414 INFO quick_adcp importing matplotlib 2012-05-15 11:25:40,592 DEBUG quick_mpl in Q_mpl 2012-05-15 11:25:40,593 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg clearflags ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_guess_xducerxy run_guess_xducerxy_npy run_loaddb run_loadlta_npy run_loadping run_lstconfig run_lsthdg run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd_lta run_pybincmd_uhdas run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanlta_npy run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy run_xducerxy_npy scanping setflags smoothr timegrid timslip ubprint write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2012-05-15 11:25:40,593 INFO quick_adcp cwd is /home/data/at20/proc/os75bb about to run these steps: - editsetup - scandata - avg_and_load - setflags - getnav - get_headcorr - rotate - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - apply_edit - navsteps - lst_temp - calib - matfiles - find_pflags 2012-05-15 11:25:40,594 INFO quick_adcp original fix file is a_at.gps 2012-05-15 11:25:40,594 INFO quick_adcp smoothed nav file is a_at_refsm.asc 2012-05-15 11:25:40,594 DEBUG quick_asect extracting matlab files for os75, bb pings 2012-05-15 11:25:41,781 DEBUG quick_setup data directory: /home/data/at20/raw/os75 2012-05-15 11:25:41,792 INFO quick_setup found 628 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/at20/raw/os75/*.raw" 2012-05-15 11:25:41,856 DEBUG quick_setup found 628 files from original filelist 2012-05-15 11:25:41,856 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/at20/raw/os75/at2012_083_48871.raw ... 2012-05-15 11:25:41,864 DEBUG quick_adcp Tue May 15 11:25:41 2012 running quick_adcp.py as follows: --cntfile /home/data/at20/proc/os75bb/os75bb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 21 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2012 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgpath /home/data/at20/proc/os75bb/config cntfile /home/data/at20/proc/os75bb/os75bb_qpy.cnt commands None configtype python cruisename at20 data_def vmadcp.def datadir /home/data/at20/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/at20/raw/os75/at2012_083_48871.raw', '/home/data/at20/raw/os75/at2012_083_50400.raw', '/home/data/at20/raw/os75/at2012_083_57600.raw', '/home/data/at20/raw/os75/at2012_083_64800.raw', '/home/data/at20/raw/os75/at2012_083_72000.raw', '/home/data/at20/raw/os75/at2012_083_79200.raw', '/home/data/at20/raw/os75/at2012_084_00000.raw', '/home/data/at20/raw/os75/at2012_084_07200.raw', '/home/data/at20/raw/os75/at2012_084_14400.raw', '/home/data/at20/raw/os75/at2012_084_21600.raw', '/home/data/at20/raw/os75/at2012_084_28800.raw', '/home/data/at20/raw/os75/at2012_084_36000.raw', '/home/data/at20/raw/os75/at2012_084_43200.raw', '/home/data/at20/raw/os75/at2012_084_50400.raw', '/home/data/at20/raw/os75/at2012_084_57600.raw', '/home/data/at20/raw/os75/at2012_084_64800.raw', '/home/data/at20/raw/os75/at2012_084_72000.raw', '/home/data/at20/raw/os75/at2012_084_79200.raw', '/home/data/at20/raw/os75/at2012_085_00000.raw', '/home/data/at20/raw/os75/at2012_085_07200.raw', '/home/data/at20/raw/os75/at2012_085_14400.raw', '/home/data/at20/raw/os75/at2012_085_21600.raw', '/home/data/at20/raw/os75/at2012_085_28800.raw', '/home/data/at20/raw/os75/at2012_085_36000.raw', '/home/data/at20/raw/os75/at2012_085_43200.raw', '/home/data/at20/raw/os75/at2012_085_50400.raw', '/home/data/at20/raw/os75/at2012_085_57600.raw', '/home/data/at20/raw/os75/at2012_085_64800.raw', '/home/data/at20/raw/os75/at2012_085_72000.raw', '/home/data/at20/raw/os75/at2012_085_76794.raw', '/home/data/at20/raw/os75/at2012_085_79200.raw', '/home/data/at20/raw/os75/at2012_086_00000.raw', '/home/data/at20/raw/os75/at2012_086_07200.raw', '/home/data/at20/raw/os75/at2012_086_14400.raw', '/home/data/at20/raw/os75/at2012_086_21600.raw', '/home/data/at20/raw/os75/at2012_086_28800.raw', '/home/data/at20/raw/os75/at2012_086_36000.raw', '/home/data/at20/raw/os75/at2012_086_43200.raw', '/home/data/at20/raw/os75/at2012_086_50400.raw', '/home/data/at20/raw/os75/at2012_086_57600.raw', '/home/data/at20/raw/os75/at2012_086_64800.raw', '/home/data/at20/raw/os75/at2012_086_72000.raw', '/home/data/at20/raw/os75/at2012_086_79200.raw', '/home/data/at20/raw/os75/at2012_087_00000.raw', '/home/data/at20/raw/os75/at2012_087_07200.raw', '/home/data/at20/raw/os75/at2012_087_14400.raw', '/home/data/at20/raw/os75/at2012_087_21600.raw', '/home/data/at20/raw/os75/at2012_087_28800.raw', '/home/data/at20/raw/os75/at2012_087_36000.raw', '/home/data/at20/raw/os75/at2012_087_43200.raw', '/home/data/at20/raw/os75/at2012_087_50400.raw', '/home/data/at20/raw/os75/at2012_087_57600.raw', '/home/data/at20/raw/os75/at2012_087_64800.raw', '/home/data/at20/raw/os75/at2012_087_72000.raw', '/home/data/at20/raw/os75/at2012_087_79200.raw', '/home/data/at20/raw/os75/at2012_088_00000.raw', '/home/data/at20/raw/os75/at2012_088_07200.raw', '/home/data/at20/raw/os75/at2012_088_14400.raw', '/home/data/at20/raw/os75/at2012_088_21600.raw', '/home/data/at20/raw/os75/at2012_088_28800.raw', '/home/data/at20/raw/os75/at2012_088_36000.raw', '/home/data/at20/raw/os75/at2012_088_43200.raw', '/home/data/at20/raw/os75/at2012_088_50400.raw', '/home/data/at20/raw/os75/at2012_088_57600.raw', '/home/data/at20/raw/os75/at2012_088_64800.raw', '/home/data/at20/raw/os75/at2012_088_72000.raw', '/home/data/at20/raw/os75/at2012_088_79200.raw', '/home/data/at20/raw/os75/at2012_089_00000.raw', '/home/data/at20/raw/os75/at2012_089_07200.raw', '/home/data/at20/raw/os75/at2012_089_14400.raw', '/home/data/at20/raw/os75/at2012_089_21600.raw', '/home/data/at20/raw/os75/at2012_089_28800.raw', '/home/data/at20/raw/os75/at2012_089_36000.raw', '/home/data/at20/raw/os75/at2012_089_43200.raw', '/home/data/at20/raw/os75/at2012_089_50400.raw', '/home/data/at20/raw/os75/at2012_089_57600.raw', '/home/data/at20/raw/os75/at2012_089_64800.raw', '/home/data/at20/raw/os75/at2012_089_72000.raw', '/home/data/at20/raw/os75/at2012_089_79200.raw', '/home/data/at20/raw/os75/at2012_090_00000.raw', '/home/data/at20/raw/os75/at2012_090_07200.raw', '/home/data/at20/raw/os75/at2012_090_14400.raw', '/home/data/at20/raw/os75/at2012_090_21600.raw', '/home/data/at20/raw/os75/at2012_090_28800.raw', '/home/data/at20/raw/os75/at2012_090_36000.raw', '/home/data/at20/raw/os75/at2012_090_43200.raw', '/home/data/at20/raw/os75/at2012_090_50400.raw', '/home/data/at20/raw/os75/at2012_090_57600.raw', '/home/data/at20/raw/os75/at2012_090_64800.raw', '/home/data/at20/raw/os75/at2012_090_72000.raw', '/home/data/at20/raw/os75/at2012_090_79200.raw', '/home/data/at20/raw/os75/at2012_091_00000.raw', '/home/data/at20/raw/os75/at2012_091_07200.raw', '/home/data/at20/raw/os75/at2012_091_14400.raw', '/home/data/at20/raw/os75/at2012_091_21600.raw', '/home/data/at20/raw/os75/at2012_091_28800.raw', '/home/data/at20/raw/os75/at2012_091_36000.raw', '/home/data/at20/raw/os75/at2012_091_43200.raw', '/home/data/at20/raw/os75/at2012_091_50400.raw', '/home/data/at20/raw/os75/at2012_091_57600.raw', '/home/data/at20/raw/os75/at2012_091_64800.raw', '/home/data/at20/raw/os75/at2012_091_72000.raw', '/home/data/at20/raw/os75/at2012_091_79200.raw', '/home/data/at20/raw/os75/at2012_092_00000.raw', '/home/data/at20/raw/os75/at2012_092_07200.raw', '/home/data/at20/raw/os75/at2012_092_14400.raw', '/home/data/at20/raw/os75/at2012_092_21600.raw', '/home/data/at20/raw/os75/at2012_092_28800.raw', '/home/data/at20/raw/os75/at2012_092_36000.raw', '/home/data/at20/raw/os75/at2012_092_43200.raw', '/home/data/at20/raw/os75/at2012_092_50400.raw', '/home/data/at20/raw/os75/at2012_092_57600.raw', '/home/data/at20/raw/os75/at2012_092_64800.raw', '/home/data/at20/raw/os75/at2012_092_72000.raw', '/home/data/at20/raw/os75/at2012_092_79200.raw', '/home/data/at20/raw/os75/at2012_093_00000.raw', '/home/data/at20/raw/os75/at2012_093_07200.raw', '/home/data/at20/raw/os75/at2012_093_14400.raw', '/home/data/at20/raw/os75/at2012_093_21600.raw', '/home/data/at20/raw/os75/at2012_093_28800.raw', '/home/data/at20/raw/os75/at2012_093_36000.raw', '/home/data/at20/raw/os75/at2012_093_43200.raw', '/home/data/at20/raw/os75/at2012_093_50400.raw', '/home/data/at20/raw/os75/at2012_093_57600.raw', '/home/data/at20/raw/os75/at2012_093_64800.raw', '/home/data/at20/raw/os75/at2012_093_72000.raw', '/home/data/at20/raw/os75/at2012_093_79200.raw', '/home/data/at20/raw/os75/at2012_094_00000.raw', '/home/data/at20/raw/os75/at2012_094_07200.raw', '/home/data/at20/raw/os75/at2012_094_14400.raw', '/home/data/at20/raw/os75/at2012_094_21600.raw', '/home/data/at20/raw/os75/at2012_094_28800.raw', '/home/data/at20/raw/os75/at2012_094_36000.raw', '/home/data/at20/raw/os75/at2012_094_43200.raw', '/home/data/at20/raw/os75/at2012_094_50400.raw', '/home/data/at20/raw/os75/at2012_094_57600.raw', '/home/data/at20/raw/os75/at2012_094_64800.raw', '/home/data/at20/raw/os75/at2012_094_72000.raw', '/home/data/at20/raw/os75/at2012_094_79200.raw', '/home/data/at20/raw/os75/at2012_095_00000.raw', '/home/data/at20/raw/os75/at2012_095_07200.raw', '/home/data/at20/raw/os75/at2012_095_14400.raw', '/home/data/at20/raw/os75/at2012_095_21600.raw', '/home/data/at20/raw/os75/at2012_095_28800.raw', '/home/data/at20/raw/os75/at2012_095_36000.raw', '/home/data/at20/raw/os75/at2012_095_43200.raw', '/home/data/at20/raw/os75/at2012_095_50400.raw', '/home/data/at20/raw/os75/at2012_095_57600.raw', '/home/data/at20/raw/os75/at2012_095_64800.raw', '/home/data/at20/raw/os75/at2012_095_72000.raw', '/home/data/at20/raw/os75/at2012_095_79200.raw', '/home/data/at20/raw/os75/at2012_096_00000.raw', '/home/data/at20/raw/os75/at2012_096_07200.raw', '/home/data/at20/raw/os75/at2012_096_14400.raw', '/home/data/at20/raw/os75/at2012_096_21600.raw', '/home/data/at20/raw/os75/at2012_096_28800.raw', '/home/data/at20/raw/os75/at2012_096_36000.raw', '/home/data/at20/raw/os75/at2012_096_43200.raw', '/home/data/at20/raw/os75/at2012_096_50400.raw', '/home/data/at20/raw/os75/at2012_096_57600.raw', '/home/data/at20/raw/os75/at2012_096_64800.raw', '/home/data/at20/raw/os75/at2012_096_72000.raw', '/home/data/at20/raw/os75/at2012_096_79200.raw', '/home/data/at20/raw/os75/at2012_097_00000.raw', '/home/data/at20/raw/os75/at2012_097_07200.raw', '/home/data/at20/raw/os75/at2012_097_14400.raw', '/home/data/at20/raw/os75/at2012_097_21600.raw', '/home/data/at20/raw/os75/at2012_097_28800.raw', '/home/data/at20/raw/os75/at2012_097_36000.raw', '/home/data/at20/raw/os75/at2012_097_43200.raw', '/home/data/at20/raw/os75/at2012_097_50400.raw', '/home/data/at20/raw/os75/at2012_097_57600.raw', '/home/data/at20/raw/os75/at2012_097_64800.raw', '/home/data/at20/raw/os75/at2012_097_72000.raw', '/home/data/at20/raw/os75/at2012_097_79200.raw', '/home/data/at20/raw/os75/at2012_098_00000.raw', '/home/data/at20/raw/os75/at2012_098_07200.raw', '/home/data/at20/raw/os75/at2012_098_14400.raw', '/home/data/at20/raw/os75/at2012_098_21600.raw', '/home/data/at20/raw/os75/at2012_098_28800.raw', '/home/data/at20/raw/os75/at2012_098_36000.raw', '/home/data/at20/raw/os75/at2012_098_43200.raw', '/home/data/at20/raw/os75/at2012_098_50400.raw', '/home/data/at20/raw/os75/at2012_098_57600.raw', '/home/data/at20/raw/os75/at2012_098_64800.raw', '/home/data/at20/raw/os75/at2012_098_72000.raw', '/home/data/at20/raw/os75/at2012_098_79200.raw', '/home/data/at20/raw/os75/at2012_099_00000.raw', '/home/data/at20/raw/os75/at2012_099_07200.raw', '/home/data/at20/raw/os75/at2012_099_14400.raw', '/home/data/at20/raw/os75/at2012_099_21600.raw', '/home/data/at20/raw/os75/at2012_099_28800.raw', '/home/data/at20/raw/os75/at2012_099_36000.raw', '/home/data/at20/raw/os75/at2012_099_43200.raw', '/home/data/at20/raw/os75/at2012_099_50400.raw', '/home/data/at20/raw/os75/at2012_099_57600.raw', '/home/data/at20/raw/os75/at2012_099_64800.raw', '/home/data/at20/raw/os75/at2012_099_72000.raw', '/home/data/at20/raw/os75/at2012_099_79200.raw', '/home/data/at20/raw/os75/at2012_100_00000.raw', '/home/data/at20/raw/os75/at2012_100_07200.raw', '/home/data/at20/raw/os75/at2012_100_14400.raw', '/home/data/at20/raw/os75/at2012_100_21600.raw', '/home/data/at20/raw/os75/at2012_100_28800.raw', '/home/data/at20/raw/os75/at2012_100_36000.raw', '/home/data/at20/raw/os75/at2012_100_43200.raw', '/home/data/at20/raw/os75/at2012_100_50400.raw', '/home/data/at20/raw/os75/at2012_100_57600.raw', '/home/data/at20/raw/os75/at2012_100_64800.raw', '/home/data/at20/raw/os75/at2012_100_72000.raw', '/home/data/at20/raw/os75/at2012_100_79200.raw', '/home/data/at20/raw/os75/at2012_101_00000.raw', '/home/data/at20/raw/os75/at2012_101_07200.raw', '/home/data/at20/raw/os75/at2012_101_14400.raw', '/home/data/at20/raw/os75/at2012_101_21600.raw', '/home/data/at20/raw/os75/at2012_101_28800.raw', '/home/data/at20/raw/os75/at2012_101_36000.raw', '/home/data/at20/raw/os75/at2012_101_43200.raw', '/home/data/at20/raw/os75/at2012_101_50400.raw', '/home/data/at20/raw/os75/at2012_101_57600.raw', '/home/data/at20/raw/os75/at2012_101_64800.raw', '/home/data/at20/raw/os75/at2012_101_72000.raw', '/home/data/at20/raw/os75/at2012_101_79200.raw', '/home/data/at20/raw/os75/at2012_102_00000.raw', '/home/data/at20/raw/os75/at2012_102_07200.raw', '/home/data/at20/raw/os75/at2012_102_14400.raw', '/home/data/at20/raw/os75/at2012_102_21600.raw', '/home/data/at20/raw/os75/at2012_102_28800.raw', '/home/data/at20/raw/os75/at2012_102_36000.raw', '/home/data/at20/raw/os75/at2012_102_43200.raw', '/home/data/at20/raw/os75/at2012_102_50400.raw', '/home/data/at20/raw/os75/at2012_102_57600.raw', '/home/data/at20/raw/os75/at2012_102_64800.raw', '/home/data/at20/raw/os75/at2012_102_72000.raw', '/home/data/at20/raw/os75/at2012_102_79200.raw', '/home/data/at20/raw/os75/at2012_103_00000.raw', '/home/data/at20/raw/os75/at2012_103_07200.raw', '/home/data/at20/raw/os75/at2012_103_14400.raw', '/home/data/at20/raw/os75/at2012_103_21600.raw', '/home/data/at20/raw/os75/at2012_103_28800.raw', '/home/data/at20/raw/os75/at2012_103_36000.raw', '/home/data/at20/raw/os75/at2012_103_43200.raw', '/home/data/at20/raw/os75/at2012_103_50400.raw', '/home/data/at20/raw/os75/at2012_103_57600.raw', '/home/data/at20/raw/os75/at2012_103_64800.raw', '/home/data/at20/raw/os75/at2012_103_72000.raw', '/home/data/at20/raw/os75/at2012_103_79200.raw', '/home/data/at20/raw/os75/at2012_104_00000.raw', '/home/data/at20/raw/os75/at2012_104_07200.raw', '/home/data/at20/raw/os75/at2012_104_14400.raw', '/home/data/at20/raw/os75/at2012_104_21600.raw', '/home/data/at20/raw/os75/at2012_104_28800.raw', '/home/data/at20/raw/os75/at2012_104_36000.raw', '/home/data/at20/raw/os75/at2012_104_43200.raw', '/home/data/at20/raw/os75/at2012_104_50400.raw', '/home/data/at20/raw/os75/at2012_104_57600.raw', '/home/data/at20/raw/os75/at2012_104_64800.raw', '/home/data/at20/raw/os75/at2012_104_72000.raw', '/home/data/at20/raw/os75/at2012_104_79200.raw', '/home/data/at20/raw/os75/at2012_105_00000.raw', '/home/data/at20/raw/os75/at2012_105_07200.raw', '/home/data/at20/raw/os75/at2012_105_14400.raw', '/home/data/at20/raw/os75/at2012_105_21600.raw', '/home/data/at20/raw/os75/at2012_105_28800.raw', '/home/data/at20/raw/os75/at2012_105_36000.raw', '/home/data/at20/raw/os75/at2012_105_43200.raw', '/home/data/at20/raw/os75/at2012_105_50400.raw', '/home/data/at20/raw/os75/at2012_105_57600.raw', '/home/data/at20/raw/os75/at2012_105_64800.raw', '/home/data/at20/raw/os75/at2012_105_72000.raw', '/home/data/at20/raw/os75/at2012_105_79200.raw', '/home/data/at20/raw/os75/at2012_106_00000.raw', '/home/data/at20/raw/os75/at2012_106_07200.raw', '/home/data/at20/raw/os75/at2012_106_14400.raw', '/home/data/at20/raw/os75/at2012_106_21600.raw', '/home/data/at20/raw/os75/at2012_106_28800.raw', '/home/data/at20/raw/os75/at2012_106_36000.raw', '/home/data/at20/raw/os75/at2012_106_43200.raw', '/home/data/at20/raw/os75/at2012_106_50400.raw', '/home/data/at20/raw/os75/at2012_106_57600.raw', '/home/data/at20/raw/os75/at2012_106_64800.raw', '/home/data/at20/raw/os75/at2012_106_72000.raw', '/home/data/at20/raw/os75/at2012_106_79200.raw', '/home/data/at20/raw/os75/at2012_107_00000.raw', '/home/data/at20/raw/os75/at2012_107_07200.raw', '/home/data/at20/raw/os75/at2012_107_14400.raw', '/home/data/at20/raw/os75/at2012_107_21600.raw', '/home/data/at20/raw/os75/at2012_107_28800.raw', '/home/data/at20/raw/os75/at2012_107_36000.raw', '/home/data/at20/raw/os75/at2012_107_43200.raw', '/home/data/at20/raw/os75/at2012_107_50400.raw', '/home/data/at20/raw/os75/at2012_107_57600.raw', '/home/data/at20/raw/os75/at2012_107_64800.raw', '/home/data/at20/raw/os75/at2012_107_72000.raw', '/home/data/at20/raw/os75/at2012_107_79200.raw', '/home/data/at20/raw/os75/at2012_108_00000.raw', '/home/data/at20/raw/os75/at2012_108_07200.raw', '/home/data/at20/raw/os75/at2012_108_14400.raw', '/home/data/at20/raw/os75/at2012_108_21600.raw', '/home/data/at20/raw/os75/at2012_108_28800.raw', '/home/data/at20/raw/os75/at2012_108_36000.raw', '/home/data/at20/raw/os75/at2012_108_43200.raw', '/home/data/at20/raw/os75/at2012_108_50400.raw', '/home/data/at20/raw/os75/at2012_108_57600.raw', '/home/data/at20/raw/os75/at2012_108_64800.raw', '/home/data/at20/raw/os75/at2012_108_72000.raw', '/home/data/at20/raw/os75/at2012_108_79200.raw', '/home/data/at20/raw/os75/at2012_109_00000.raw', '/home/data/at20/raw/os75/at2012_109_07200.raw', '/home/data/at20/raw/os75/at2012_109_14400.raw', '/home/data/at20/raw/os75/at2012_109_21600.raw', '/home/data/at20/raw/os75/at2012_109_28800.raw', '/home/data/at20/raw/os75/at2012_109_36000.raw', '/home/data/at20/raw/os75/at2012_109_43200.raw', '/home/data/at20/raw/os75/at2012_109_50400.raw', '/home/data/at20/raw/os75/at2012_109_55493.raw', '/home/data/at20/raw/os75/at2012_109_57600.raw', '/home/data/at20/raw/os75/at2012_109_62511.raw', '/home/data/at20/raw/os75/at2012_109_64800.raw', '/home/data/at20/raw/os75/at2012_109_72000.raw', '/home/data/at20/raw/os75/at2012_109_79200.raw', '/home/data/at20/raw/os75/at2012_110_00000.raw', '/home/data/at20/raw/os75/at2012_110_07200.raw', '/home/data/at20/raw/os75/at2012_110_14400.raw', '/home/data/at20/raw/os75/at2012_110_21600.raw', '/home/data/at20/raw/os75/at2012_110_28800.raw', '/home/data/at20/raw/os75/at2012_110_36000.raw', '/home/data/at20/raw/os75/at2012_110_43200.raw', '/home/data/at20/raw/os75/at2012_110_50400.raw', '/home/data/at20/raw/os75/at2012_110_57600.raw', '/home/data/at20/raw/os75/at2012_110_64800.raw', '/home/data/at20/raw/os75/at2012_110_72000.raw', '/home/data/at20/raw/os75/at2012_110_79200.raw', '/home/data/at20/raw/os75/at2012_111_00000.raw', '/home/data/at20/raw/os75/at2012_111_07200.raw', '/home/data/at20/raw/os75/at2012_111_14400.raw', '/home/data/at20/raw/os75/at2012_111_21600.raw', '/home/data/at20/raw/os75/at2012_111_28800.raw', '/home/data/at20/raw/os75/at2012_111_36000.raw', '/home/data/at20/raw/os75/at2012_111_43200.raw', '/home/data/at20/raw/os75/at2012_111_50400.raw', '/home/data/at20/raw/os75/at2012_111_57600.raw', '/home/data/at20/raw/os75/at2012_111_64800.raw', '/home/data/at20/raw/os75/at2012_111_72000.raw', '/home/data/at20/raw/os75/at2012_111_79200.raw', '/home/data/at20/raw/os75/at2012_112_00000.raw', '/home/data/at20/raw/os75/at2012_112_07200.raw', '/home/data/at20/raw/os75/at2012_112_14400.raw', '/home/data/at20/raw/os75/at2012_112_21600.raw', '/home/data/at20/raw/os75/at2012_112_28800.raw', '/home/data/at20/raw/os75/at2012_112_36000.raw', '/home/data/at20/raw/os75/at2012_112_43200.raw', '/home/data/at20/raw/os75/at2012_112_50400.raw', '/home/data/at20/raw/os75/at2012_112_57600.raw', '/home/data/at20/raw/os75/at2012_112_64800.raw', '/home/data/at20/raw/os75/at2012_112_72000.raw', '/home/data/at20/raw/os75/at2012_112_79200.raw', '/home/data/at20/raw/os75/at2012_113_00000.raw', '/home/data/at20/raw/os75/at2012_113_07200.raw', '/home/data/at20/raw/os75/at2012_113_14400.raw', '/home/data/at20/raw/os75/at2012_113_21600.raw', '/home/data/at20/raw/os75/at2012_113_28800.raw', '/home/data/at20/raw/os75/at2012_113_36000.raw', '/home/data/at20/raw/os75/at2012_113_43200.raw', '/home/data/at20/raw/os75/at2012_113_50400.raw', '/home/data/at20/raw/os75/at2012_113_57600.raw', '/home/data/at20/raw/os75/at2012_113_64800.raw', '/home/data/at20/raw/os75/at2012_113_72000.raw', '/home/data/at20/raw/os75/at2012_113_79200.raw', '/home/data/at20/raw/os75/at2012_114_00000.raw', '/home/data/at20/raw/os75/at2012_114_07200.raw', '/home/data/at20/raw/os75/at2012_114_14400.raw', '/home/data/at20/raw/os75/at2012_114_21600.raw', '/home/data/at20/raw/os75/at2012_114_28800.raw', '/home/data/at20/raw/os75/at2012_114_36000.raw', '/home/data/at20/raw/os75/at2012_114_43200.raw', '/home/data/at20/raw/os75/at2012_114_50400.raw', '/home/data/at20/raw/os75/at2012_114_57600.raw', '/home/data/at20/raw/os75/at2012_114_64800.raw', '/home/data/at20/raw/os75/at2012_114_72000.raw', '/home/data/at20/raw/os75/at2012_114_79200.raw', '/home/data/at20/raw/os75/at2012_115_00000.raw', '/home/data/at20/raw/os75/at2012_115_07200.raw', '/home/data/at20/raw/os75/at2012_115_14400.raw', '/home/data/at20/raw/os75/at2012_115_21600.raw', '/home/data/at20/raw/os75/at2012_115_28800.raw', '/home/data/at20/raw/os75/at2012_115_36000.raw', '/home/data/at20/raw/os75/at2012_115_43200.raw', '/home/data/at20/raw/os75/at2012_115_50400.raw', '/home/data/at20/raw/os75/at2012_115_57600.raw', '/home/data/at20/raw/os75/at2012_115_64800.raw', '/home/data/at20/raw/os75/at2012_115_72000.raw', '/home/data/at20/raw/os75/at2012_115_79200.raw', '/home/data/at20/raw/os75/at2012_116_00000.raw', '/home/data/at20/raw/os75/at2012_116_07200.raw', '/home/data/at20/raw/os75/at2012_116_14400.raw', '/home/data/at20/raw/os75/at2012_116_21600.raw', '/home/data/at20/raw/os75/at2012_116_28800.raw', '/home/data/at20/raw/os75/at2012_116_36000.raw', '/home/data/at20/raw/os75/at2012_116_43200.raw', '/home/data/at20/raw/os75/at2012_116_50400.raw', '/home/data/at20/raw/os75/at2012_116_57600.raw', '/home/data/at20/raw/os75/at2012_116_64800.raw', '/home/data/at20/raw/os75/at2012_116_72000.raw', '/home/data/at20/raw/os75/at2012_116_79200.raw', '/home/data/at20/raw/os75/at2012_117_00000.raw', '/home/data/at20/raw/os75/at2012_117_07200.raw', '/home/data/at20/raw/os75/at2012_117_14400.raw', '/home/data/at20/raw/os75/at2012_117_21600.raw', '/home/data/at20/raw/os75/at2012_117_28800.raw', '/home/data/at20/raw/os75/at2012_117_36000.raw', '/home/data/at20/raw/os75/at2012_117_43200.raw', '/home/data/at20/raw/os75/at2012_117_50400.raw', '/home/data/at20/raw/os75/at2012_117_57600.raw', '/home/data/at20/raw/os75/at2012_117_64800.raw', '/home/data/at20/raw/os75/at2012_117_72000.raw', '/home/data/at20/raw/os75/at2012_117_79200.raw', '/home/data/at20/raw/os75/at2012_118_00000.raw', '/home/data/at20/raw/os75/at2012_118_07200.raw', '/home/data/at20/raw/os75/at2012_118_14400.raw', '/home/data/at20/raw/os75/at2012_118_21600.raw', '/home/data/at20/raw/os75/at2012_118_28800.raw', '/home/data/at20/raw/os75/at2012_118_36000.raw', '/home/data/at20/raw/os75/at2012_118_43200.raw', '/home/data/at20/raw/os75/at2012_118_50400.raw', '/home/data/at20/raw/os75/at2012_118_57600.raw', '/home/data/at20/raw/os75/at2012_118_64800.raw', '/home/data/at20/raw/os75/at2012_118_72000.raw', '/home/data/at20/raw/os75/at2012_118_79200.raw', '/home/data/at20/raw/os75/at2012_119_00000.raw', '/home/data/at20/raw/os75/at2012_119_07200.raw', '/home/data/at20/raw/os75/at2012_119_14400.raw', '/home/data/at20/raw/os75/at2012_119_21600.raw', '/home/data/at20/raw/os75/at2012_119_28800.raw', '/home/data/at20/raw/os75/at2012_119_36000.raw', '/home/data/at20/raw/os75/at2012_119_43200.raw', '/home/data/at20/raw/os75/at2012_119_50400.raw', '/home/data/at20/raw/os75/at2012_119_57600.raw', '/home/data/at20/raw/os75/at2012_119_64800.raw', '/home/data/at20/raw/os75/at2012_119_72000.raw', '/home/data/at20/raw/os75/at2012_119_79200.raw', '/home/data/at20/raw/os75/at2012_120_00000.raw', '/home/data/at20/raw/os75/at2012_120_07200.raw', '/home/data/at20/raw/os75/at2012_120_14400.raw', '/home/data/at20/raw/os75/at2012_120_21600.raw', '/home/data/at20/raw/os75/at2012_120_28800.raw', '/home/data/at20/raw/os75/at2012_120_36000.raw', '/home/data/at20/raw/os75/at2012_120_43200.raw', '/home/data/at20/raw/os75/at2012_120_50400.raw', '/home/data/at20/raw/os75/at2012_120_57600.raw', '/home/data/at20/raw/os75/at2012_120_64800.raw', '/home/data/at20/raw/os75/at2012_120_72000.raw', '/home/data/at20/raw/os75/at2012_120_79200.raw', '/home/data/at20/raw/os75/at2012_121_00000.raw', '/home/data/at20/raw/os75/at2012_121_07200.raw', '/home/data/at20/raw/os75/at2012_121_14400.raw', '/home/data/at20/raw/os75/at2012_121_21600.raw', '/home/data/at20/raw/os75/at2012_121_28800.raw', '/home/data/at20/raw/os75/at2012_121_36000.raw', '/home/data/at20/raw/os75/at2012_121_43200.raw', '/home/data/at20/raw/os75/at2012_121_50400.raw', '/home/data/at20/raw/os75/at2012_121_57600.raw', '/home/data/at20/raw/os75/at2012_121_64800.raw', '/home/data/at20/raw/os75/at2012_121_72000.raw', '/home/data/at20/raw/os75/at2012_121_79200.raw', '/home/data/at20/raw/os75/at2012_122_00000.raw', '/home/data/at20/raw/os75/at2012_122_07200.raw', '/home/data/at20/raw/os75/at2012_122_14400.raw', '/home/data/at20/raw/os75/at2012_122_21600.raw', '/home/data/at20/raw/os75/at2012_122_28800.raw', '/home/data/at20/raw/os75/at2012_122_36000.raw', '/home/data/at20/raw/os75/at2012_122_43200.raw', '/home/data/at20/raw/os75/at2012_122_50400.raw', '/home/data/at20/raw/os75/at2012_122_57600.raw', '/home/data/at20/raw/os75/at2012_122_64800.raw', '/home/data/at20/raw/os75/at2012_122_72000.raw', '/home/data/at20/raw/os75/at2012_122_79200.raw', '/home/data/at20/raw/os75/at2012_123_00000.raw', '/home/data/at20/raw/os75/at2012_123_07200.raw', '/home/data/at20/raw/os75/at2012_123_14400.raw', '/home/data/at20/raw/os75/at2012_123_21600.raw', '/home/data/at20/raw/os75/at2012_123_28800.raw', '/home/data/at20/raw/os75/at2012_123_36000.raw', '/home/data/at20/raw/os75/at2012_123_43200.raw', '/home/data/at20/raw/os75/at2012_123_50400.raw', '/home/data/at20/raw/os75/at2012_123_57600.raw', '/home/data/at20/raw/os75/at2012_123_64800.raw', '/home/data/at20/raw/os75/at2012_123_72000.raw', '/home/data/at20/raw/os75/at2012_123_79200.raw', '/home/data/at20/raw/os75/at2012_124_00000.raw', '/home/data/at20/raw/os75/at2012_124_07200.raw', '/home/data/at20/raw/os75/at2012_124_14400.raw', '/home/data/at20/raw/os75/at2012_124_21600.raw', '/home/data/at20/raw/os75/at2012_124_28800.raw', '/home/data/at20/raw/os75/at2012_124_36000.raw', '/home/data/at20/raw/os75/at2012_124_43200.raw', '/home/data/at20/raw/os75/at2012_124_50400.raw', '/home/data/at20/raw/os75/at2012_124_57600.raw', '/home/data/at20/raw/os75/at2012_124_64800.raw', '/home/data/at20/raw/os75/at2012_124_72000.raw', '/home/data/at20/raw/os75/at2012_124_79200.raw', '/home/data/at20/raw/os75/at2012_125_00000.raw', '/home/data/at20/raw/os75/at2012_125_07200.raw', '/home/data/at20/raw/os75/at2012_125_14400.raw', '/home/data/at20/raw/os75/at2012_125_21600.raw', '/home/data/at20/raw/os75/at2012_125_28800.raw', '/home/data/at20/raw/os75/at2012_125_36000.raw', '/home/data/at20/raw/os75/at2012_125_43200.raw', '/home/data/at20/raw/os75/at2012_125_50400.raw', '/home/data/at20/raw/os75/at2012_125_57600.raw', '/home/data/at20/raw/os75/at2012_125_64800.raw', '/home/data/at20/raw/os75/at2012_125_72000.raw', '/home/data/at20/raw/os75/at2012_125_79200.raw', '/home/data/at20/raw/os75/at2012_126_00000.raw', '/home/data/at20/raw/os75/at2012_126_07200.raw', '/home/data/at20/raw/os75/at2012_126_14400.raw', '/home/data/at20/raw/os75/at2012_126_21600.raw', '/home/data/at20/raw/os75/at2012_126_28800.raw', '/home/data/at20/raw/os75/at2012_126_36000.raw', '/home/data/at20/raw/os75/at2012_126_43200.raw', '/home/data/at20/raw/os75/at2012_126_50400.raw', '/home/data/at20/raw/os75/at2012_126_57600.raw', '/home/data/at20/raw/os75/at2012_126_64800.raw', '/home/data/at20/raw/os75/at2012_126_72000.raw', '/home/data/at20/raw/os75/at2012_126_79200.raw', '/home/data/at20/raw/os75/at2012_127_00000.raw', '/home/data/at20/raw/os75/at2012_127_07200.raw', '/home/data/at20/raw/os75/at2012_127_14400.raw', '/home/data/at20/raw/os75/at2012_127_21600.raw', '/home/data/at20/raw/os75/at2012_127_28800.raw', '/home/data/at20/raw/os75/at2012_127_36000.raw', '/home/data/at20/raw/os75/at2012_127_43200.raw', '/home/data/at20/raw/os75/at2012_127_50400.raw', '/home/data/at20/raw/os75/at2012_127_57600.raw', '/home/data/at20/raw/os75/at2012_127_64800.raw', '/home/data/at20/raw/os75/at2012_127_72000.raw', '/home/data/at20/raw/os75/at2012_127_79200.raw', '/home/data/at20/raw/os75/at2012_128_00000.raw', '/home/data/at20/raw/os75/at2012_128_07200.raw', '/home/data/at20/raw/os75/at2012_128_14400.raw', '/home/data/at20/raw/os75/at2012_128_21600.raw', '/home/data/at20/raw/os75/at2012_128_28800.raw', '/home/data/at20/raw/os75/at2012_128_36000.raw', '/home/data/at20/raw/os75/at2012_128_43200.raw', '/home/data/at20/raw/os75/at2012_128_50400.raw', '/home/data/at20/raw/os75/at2012_128_57600.raw', '/home/data/at20/raw/os75/at2012_128_64800.raw', '/home/data/at20/raw/os75/at2012_128_72000.raw', '/home/data/at20/raw/os75/at2012_128_79200.raw', '/home/data/at20/raw/os75/at2012_129_00000.raw', '/home/data/at20/raw/os75/at2012_129_07200.raw', '/home/data/at20/raw/os75/at2012_129_14400.raw', '/home/data/at20/raw/os75/at2012_129_21600.raw', '/home/data/at20/raw/os75/at2012_129_28800.raw', '/home/data/at20/raw/os75/at2012_129_36000.raw', '/home/data/at20/raw/os75/at2012_129_43200.raw', '/home/data/at20/raw/os75/at2012_129_50400.raw', '/home/data/at20/raw/os75/at2012_129_57600.raw', '/home/data/at20/raw/os75/at2012_129_64800.raw', '/home/data/at20/raw/os75/at2012_129_72000.raw', '/home/data/at20/raw/os75/at2012_129_79200.raw', '/home/data/at20/raw/os75/at2012_130_00000.raw', '/home/data/at20/raw/os75/at2012_130_07200.raw', '/home/data/at20/raw/os75/at2012_130_14400.raw', '/home/data/at20/raw/os75/at2012_130_21600.raw', '/home/data/at20/raw/os75/at2012_130_28800.raw', '/home/data/at20/raw/os75/at2012_130_36000.raw', '/home/data/at20/raw/os75/at2012_130_43200.raw', '/home/data/at20/raw/os75/at2012_130_50400.raw', '/home/data/at20/raw/os75/at2012_130_57600.raw', '/home/data/at20/raw/os75/at2012_130_64800.raw', '/home/data/at20/raw/os75/at2012_130_72000.raw', '/home/data/at20/raw/os75/at2012_130_79200.raw', '/home/data/at20/raw/os75/at2012_131_00000.raw', '/home/data/at20/raw/os75/at2012_131_07200.raw', '/home/data/at20/raw/os75/at2012_131_14400.raw', '/home/data/at20/raw/os75/at2012_131_21600.raw', '/home/data/at20/raw/os75/at2012_131_28800.raw', '/home/data/at20/raw/os75/at2012_131_36000.raw', '/home/data/at20/raw/os75/at2012_131_43200.raw', '/home/data/at20/raw/os75/at2012_131_50400.raw', '/home/data/at20/raw/os75/at2012_131_57600.raw', '/home/data/at20/raw/os75/at2012_131_64800.raw', '/home/data/at20/raw/os75/at2012_131_72000.raw', '/home/data/at20/raw/os75/at2012_131_79200.raw', '/home/data/at20/raw/os75/at2012_132_00000.raw', '/home/data/at20/raw/os75/at2012_132_07200.raw', '/home/data/at20/raw/os75/at2012_132_14400.raw', '/home/data/at20/raw/os75/at2012_132_21600.raw', '/home/data/at20/raw/os75/at2012_132_28800.raw', '/home/data/at20/raw/os75/at2012_132_36000.raw', '/home/data/at20/raw/os75/at2012_132_43200.raw', '/home/data/at20/raw/os75/at2012_132_50400.raw', '/home/data/at20/raw/os75/at2012_132_57600.raw', '/home/data/at20/raw/os75/at2012_132_64800.raw', '/home/data/at20/raw/os75/at2012_132_72000.raw', '/home/data/at20/raw/os75/at2012_132_79200.raw', '/home/data/at20/raw/os75/at2012_133_00000.raw', '/home/data/at20/raw/os75/at2012_133_07200.raw', '/home/data/at20/raw/os75/at2012_133_14400.raw', '/home/data/at20/raw/os75/at2012_133_21600.raw', '/home/data/at20/raw/os75/at2012_133_28800.raw', '/home/data/at20/raw/os75/at2012_133_36000.raw', '/home/data/at20/raw/os75/at2012_133_43200.raw', '/home/data/at20/raw/os75/at2012_133_50400.raw', '/home/data/at20/raw/os75/at2012_133_57600.raw', '/home/data/at20/raw/os75/at2012_133_64800.raw', '/home/data/at20/raw/os75/at2012_133_72000.raw', '/home/data/at20/raw/os75/at2012_133_79200.raw', '/home/data/at20/raw/os75/at2012_134_00000.raw', '/home/data/at20/raw/os75/at2012_134_07200.raw', '/home/data/at20/raw/os75/at2012_134_14400.raw', '/home/data/at20/raw/os75/at2012_134_21600.raw', '/home/data/at20/raw/os75/at2012_134_28800.raw', '/home/data/at20/raw/os75/at2012_134_36000.raw', '/home/data/at20/raw/os75/at2012_134_43200.raw', '/home/data/at20/raw/os75/at2012_134_50400.raw', '/home/data/at20/raw/os75/at2012_134_57600.raw', '/home/data/at20/raw/os75/at2012_134_64800.raw', '/home/data/at20/raw/os75/at2012_134_72000.raw', '/home/data/at20/raw/os75/at2012_134_79200.raw', '/home/data/at20/raw/os75/at2012_135_00000.raw', '/home/data/at20/raw/os75/at2012_135_07200.raw', '/home/data/at20/raw/os75/at2012_135_14400.raw', '/home/data/at20/raw/os75/at2012_135_21600.raw', '/home/data/at20/raw/os75/at2012_135_28800.raw', '/home/data/at20/raw/os75/at2012_135_33170.raw', '/home/data/at20/raw/os75/at2012_135_36000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 21 fixfile a_at.gps frequency 75 gbin_style python gbindirbase /home/data/at20/gbin hcorr_inst phins help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 300 max_search_depth 1000 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 overview False pgmin 50 ping_headcorr False pingtype bb post_headcorr None printformats png proc_engine python proc_yearbase 2012 progdir /home/currents/programs py_gbindirbase /home/data/at20/gbin rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_at_refsm.asc sonar os75bb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2012 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2012-05-15 11:25:41,865 INFO quick_adcp --------------------------------------------- 2012-05-15 11:25:41,865 INFO quick_adcp step 1: set up editing files 2012-05-15 11:25:41,865 DEBUG quick_run executing commands from /home/data/at20/proc/os75bb/edit 2012-05-15 11:25:41,875 DEBUG quick_run setup.m exists. not replacing 2012-05-15 11:25:41,875 DEBUG quick_run asetup.m exists. not replacing 2012-05-15 11:25:41,876 DEBUG quick_run aflagit_setup.m exists. not replacing 2012-05-15 11:25:41,876 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 clear_range /* reset range */ clear_all_bits /* clear flags except pg_min*/ clear_bad_profile /* reset access vars lgb */ time_ranges: all 2012-05-15 11:25:41,876 INFO quick_adcp --------------------------------------------- 2012-05-15 11:25:41,877 INFO quick_adcp step 2: scan files for time range 2012-05-15 11:25:41,877 INFO quick_adcp about to run numpy scan, requiring python gbins 2012-05-15 11:25:41,877 DEBUG quick_npy Starting: scanping 2012-05-15 11:26:01,199 DEBUG quick_npy Ending: scanping 2012-05-15 11:26:01,206 DEBUG quick_subs start_end_time 2012/03/24 13:34:38 to 2012/03/24 13:49:51 2012-05-15 11:26:01,207 DEBUG quick_subs dd0: 83.565718 dd1: 83.576285 2012-05-15 11:26:01,207 INFO quick_adcp in quick_adcp.py: after scan; look for database times in /home/data/at20/proc/os75bb 2012-05-15 11:26:01,208 INFO quick_adcp looking for database with adcpdb/a_at*.blk 2012-05-15 11:26:01,215 INFO quick_adcp database found: listing blocks 2012-05-15 11:26:01,216 DEBUG quick_subs removing a_atdir.blk 2012-05-15 11:26:01,221 DEBUG quick_subs about to run mkblkdir 2012-05-15 11:26:01,221 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-05-15 11:26:01,222 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2012-05-15 11:26:01,271 DEBUG quick_subs database passes. 2012-05-15 11:26:01,273 DEBUG quick_subs start_end_time 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:26:01,273 DEBUG quick_subs dd0: 83.569120 dd1: 135.381609 2012-05-15 11:26:01,274 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2012-05-15 11:26:01,274 DEBUG quick_adcp origdb_time_range is 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:26:01,274 DEBUG quick_adcp (83.569120 to 135.381609) 2012-05-15 11:26:01,274 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:01,275 INFO quick_adcp step 3: generate averaged data... 2012-05-15 11:26:01,275 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2012-05-15 11:26:01,275 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:01,276 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/load 2012-05-15 11:26:01,276 DEBUG quick_setup running python command "run_pingavg_npy" 2012-05-15 11:26:01,276 DEBUG quick_npy Starting: pingavg 2012-05-15 11:26:01,303 DEBUG quick_npy singleping editing parameters: 2012-05-15 11:26:01,303 DEBUG quick_npy bigtarget_mab_window : 11 2012-05-15 11:26:01,303 DEBUG quick_npy rl_endbin : 20 2012-05-15 11:26:01,303 DEBUG quick_npy max_search_depth : 1000 2012-05-15 11:26:01,304 DEBUG quick_npy cor_cutoff : 120 2012-05-15 11:26:01,304 DEBUG quick_npy ampfilt : 40 2012-05-15 11:26:01,304 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2012-05-15 11:26:01,304 DEBUG quick_npy rl_startbin : 2 2012-05-15 11:26:01,304 DEBUG quick_npy ecutoff : 1 2012-05-15 11:26:01,305 DEBUG quick_npy refavg_valcutoff : 1 2012-05-15 11:26:01,305 DEBUG quick_npy weakprof_percent : 30 2012-05-15 11:26:01,306 DEBUG quick_npy bigtarget_ampthresh : 55 2012-05-15 11:26:01,326 INFO pingavg Pingavg.run for time range 135.333335 to 135.383324 2012-05-15 11:26:01,411 DEBUG pingavg Chunk 1 of 1, 135.333335 to 135.383324 2012-05-15 11:26:01,412 DEBUG pingavg Nothing written 2012-05-15 11:26:01,412 DEBUG quick_npy wrote 0 averages 2012-05-15 11:26:01,434 DEBUG quick_npy Ending: pingavg 2012-05-15 11:26:01,434 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:01,434 INFO quick_adcp step 4: load averaged data (to database) 2012-05-15 11:26:01,437 DEBUG quick_subs in del_overlapping 2012-05-15 11:26:01,437 DEBUG quick_subs lastblock: 2012-05-15 11:26:01,437 DEBUG quick_subs 50 2012-05-15 11:26:01,438 DEBUG quick_subs lastcmd: 2012-05-15 11:26:01,438 DEBUG quick_subs 50 2012-05-15 11:26:01,439 DEBUG quick_subs delblks: 2012-05-15 11:26:01,439 DEBUG quick_subs [50] 2012-05-15 11:26:01,439 DEBUG quick_subs loadblks: 2012-05-15 11:26:01,439 DEBUG quick_subs [50] 2012-05-15 11:26:01,449 DEBUG quick_subs about to run mkblkdir 2012-05-15 11:26:01,450 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-05-15 11:26:01,450 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2012-05-15 11:26:01,473 DEBUG quick_subs database passes. 2012-05-15 11:26:01,474 DEBUG quick_subs start_end_time 2012/03/24 13:39:32 to 2012/05/14 14:34:34 2012-05-15 11:26:01,475 DEBUG quick_subs dd0: 83.569120 dd1: 134.607338 2012-05-15 11:26:01,475 DEBUG quick_run [50] 2012-05-15 11:26:01,475 DEBUG quick_run cmdlist 2012-05-15 11:26:01,475 DEBUG quick_run ['./ens_blk050.cmd'] 2012-05-15 11:26:01,547 INFO quick_run Warning: 1 files will be loaded; 50 already exist 2012-05-15 11:26:01,547 INFO quick_run Tue May 15 11:26:01 2012 2012-05-15 11:26:01,547 INFO quick_run about to load uhdas files 2012-05-15 11:26:01,547 INFO quick_run /home/data/at20/raw/os75/at2012_083_48871.raw /home/data/at20/raw/os75/at2012_083_50400.raw /home/data/at20/raw/os75/at2012_083_57600.raw /home/data/at20/raw/os75/at2012_083_64800.raw /home/data/at20/raw/os75/at2012_083_72000.raw ... 2012-05-15 11:26:01,548 DEBUG quick_setup load/ldcodas.tmp exists 2012-05-15 11:26:01,548 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:01,548 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/load 2012-05-15 11:26:01,548 DEBUG quick_setup running python command "ldcodas" 2012-05-15 11:26:01,549 DEBUG quick_subs filling "thisload" timerange 2012-05-15 11:26:01,553 DEBUG quick_subs in ldcodas 2012-05-15 11:26:01,553 DEBUG quick_subs cmdlist: 2012-05-15 11:26:01,553 DEBUG quick_subs ['./ens_blk050.cmd'] 2012-05-15 11:26:01,554 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2012 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk050.cmd 2012-05-15 11:26:01,554 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2012-05-15 11:26:01,729 DEBUG quick_subs removing a_atdir.blk 2012-05-15 11:26:01,730 DEBUG quick_subs about to run mkblkdir 2012-05-15 11:26:01,730 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-05-15 11:26:01,731 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2012-05-15 11:26:01,754 DEBUG quick_subs database passes. 2012-05-15 11:26:01,755 DEBUG quick_subs start_end_time 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:26:01,755 DEBUG quick_subs dd0: 83.569120 dd1: 135.381609 2012-05-15 11:26:01,756 INFO quick_adcp loaded_time_range is 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:26:01,756 INFO quick_adcp (83.569120 to 135.381609) 2012-05-15 11:26:01,757 INFO quick_adcp origdb_time_range is 2012/03/24 13:39:32 to 2012/05/15 09:09:31 2012-05-15 11:26:01,757 INFO quick_adcp (83.569120 to 135.381609) 2012-05-15 11:26:01,757 INFO quick_adcp thisload_time_range is 2012/05/14 14:39:34 to 2012/05/15 09:09:31 2012-05-15 11:26:01,758 INFO quick_adcp (134.610810 to 134.610810) 2012-05-15 11:26:01,758 INFO quick_adcp --------------------- 2012-05-15 11:26:01,758 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:01,759 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/adcpdb 2012-05-15 11:26:01,759 DEBUG quick_setup running python command "lst_conf" 2012-05-15 11:26:01,759 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2012-05-15 11:26:01,759 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2012-05-15 11:26:34,795 DEBUG quick_setup found (in edit/asetup.m): 2012-05-15 11:26:34,796 DEBUG quick_setup config.beamangle is 30 2012-05-15 11:26:34,796 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:34,796 INFO quick_adcp step 5: set up files for gautoedit.py 2012-05-15 11:26:34,799 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2012-05-15 11:26:34,799 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:34,799 INFO quick_adcp step 6: set up files for gautoedit.py 2012-05-15 11:26:34,799 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:34,800 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/edit 2012-05-15 11:26:34,800 DEBUG quick_setup running python command "setflags" 2012-05-15 11:26:34,800 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2012-05-15 11:26:34,805 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2012-05-15 11:26:35,397 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:35,398 INFO quick_adcp step 7: get navigation 2012-05-15 11:26:35,398 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:35,398 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:26:35,399 DEBUG quick_setup running python command "catnav" 2012-05-15 11:26:36,433 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2012-05-15 11:26:36,433 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:36,433 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/cal/rotate 2012-05-15 11:26:36,433 DEBUG quick_setup running python command "lst_hdg" 2012-05-15 11:26:36,434 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2012 time_ranges: all 2012-05-15 11:26:36,434 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2012-05-15 11:26:36,665 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:36,665 INFO quick_adcp step 8: get heading correction 2012-05-15 11:26:36,665 DEBUG quick_run hcorr_inst is phins 2012-05-15 11:26:36,666 DEBUG quick_mpl Starting plot: hcorr 2012-05-15 11:26:38,416 DEBUG quick_mplplots found 51.812489 days of data 2012-05-15 11:26:38,416 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2012-05-15 11:26:38,416 DEBUG quick_mplplots printing 14 pages 2012-05-15 11:26:41,324 DEBUG quick_mpl Ending plot: hcorr 2012-05-15 11:26:41,325 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:41,325 INFO quick_adcp step 9: rotate velocities 2012-05-15 11:26:41,325 DEBUG quick_setup cal/rotate/norotate.tmp exists 2012-05-15 11:26:41,325 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:41,326 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/cal/rotate 2012-05-15 11:26:41,327 DEBUG quick_setup running python command "norotate" 2012-05-15 11:26:41,327 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. */ DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2012/03/24 13:39:32 to 2012/05/15 09:09:31 OPTION_LIST: water_and_bottom_track: year_base= 2012 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2012-05-15 11:26:41,327 DEBUG quick_setup about to run echo "writing dummy rotate file" 2012-05-15 11:26:41,335 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:41,336 INFO quick_adcp step 10: nav steps: run adcpsect 2012-05-15 11:26:41,336 DEBUG quick_setup nav/as_nav.tmp exists 2012-05-15 11:26:41,336 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:41,337 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:26:41,337 DEBUG quick_setup running python command "as_nav" 2012-05-15 11:26:41,337 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2012 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/03/24 13:39:32 to 2012/05/15 09:09:31 /* the whole time range */ 2012-05-15 11:26:41,338 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2012-05-15 11:26:41,884 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:41,889 INFO quick_adcp step 11: nav steps: run refabs 2012-05-15 11:26:41,889 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:41,890 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:26:41,890 DEBUG quick_setup running python command "refabs" 2012-05-15 11:26:41,890 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2012 ensemble_length= 300 gap_tolerance= 10 2012-05-15 11:26:41,891 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2012-05-15 11:26:42,273 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:42,274 INFO quick_adcp step 12: nav steps: run smoothr for plots 2012-05-15 11:26:42,275 DEBUG quick_setup nav/smoothr.tmp exists 2012-05-15 11:26:42,275 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:42,276 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:26:42,276 DEBUG quick_setup running python command "smoothr" 2012-05-15 11:26:42,276 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-05-15 11:26:42,277 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2012-05-15 11:26:44,853 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:44,854 INFO quick_adcp step 13: nav steps: smooth navigation 2012-05-15 11:26:44,854 INFO quick_adcp about to run numpy refsm 2012-05-15 11:26:44,854 DEBUG quick_npy Starting: refsm 2012-05-15 11:26:46,966 DEBUG nav dtmin = -0.50 dtmax = 4.10 2012-05-15 11:26:49,636 DEBUG quick_npy Ending: refsm 2012-05-15 11:26:49,640 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:49,640 INFO quick_adcp step 14: nav steps: put smoothed nav into codasdb 2012-05-15 11:26:49,645 DEBUG quick_setup nav/putnav.tmp exists 2012-05-15 11:26:49,645 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:49,646 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:26:49,646 DEBUG quick_setup running python command "putnav" 2012-05-15 11:26:49,646 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2012 tolerance= 5 navigation_sources: gps end 2012-05-15 11:26:49,647 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2012-05-15 11:26:50,641 INFO quick_adcp plotting navigation 2012-05-15 11:26:50,642 DEBUG quick_mpl Starting plot: nav 2012-05-15 11:26:52,113 DEBUG quick_mpl Ending plot: nav 2012-05-15 11:26:52,113 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:52,113 INFO quick_adcp step 15: nav steps: make reflayer plots 2012-05-15 11:26:52,114 DEBUG quick_mpl Starting plot: refl 2012-05-15 11:26:53,290 DEBUG quick_mplplots found 51.802064 days of data 2012-05-15 11:26:53,291 DEBUG quick_mplplots start day is 83.000000 2012-05-15 11:26:53,291 DEBUG quick_mplplots figures with 2.000000 days per page 2012-05-15 11:26:53,291 DEBUG quick_mplplots printing 27 pages 2012-05-15 11:26:53,291 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-05-15 11:26:56,318 DEBUG quick_mpl Ending plot: refl 2012-05-15 11:26:56,319 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:56,319 INFO quick_adcp step 16: find profile flags 2012-05-15 11:26:56,320 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:56,320 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/edit 2012-05-15 11:26:56,320 DEBUG quick_setup running python command "run_autoedit_npy" 2012-05-15 11:26:56,320 DEBUG quick_npy Starting: autoedit 2012-05-15 11:26:58,202 DEBUG pingedit wrote 37 bad bins to abadbin_tmp.asc 2012-05-15 11:26:58,261 DEBUG pingedit wrote 1 bad profiles to abadprf_tmp.asc 2012-05-15 11:26:58,262 DEBUG quick_npy Ending: autoedit 2012-05-15 11:26:58,262 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:58,262 INFO quick_adcp step 17: apply editing 2012-05-15 11:26:58,263 DEBUG quick_run starting in: /home/data/at20/proc/os75bb 2012-05-15 11:26:58,263 DEBUG quick_run executing commands from: edit 2012-05-15 11:26:58,266 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_at abadprf_tmp.asc 2012-05-15 11:26:58,275 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_at abadbin_tmp.asc 2012-05-15 11:26:58,304 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_at 30 2012-05-15 11:26:58,316 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2012-05-15 11:26:58,316 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2012-05-15 11:26:58,775 DEBUG quick_run changing directories back to /home/data/at20/proc/os75bb 2012-05-15 11:26:58,776 INFO quick_adcp --------------------------------------------- 2012-05-15 11:26:58,776 INFO quick_adcp step 18: run nav steps 2012-05-15 11:26:58,776 DEBUG quick_setup nav/as_nav.tmp exists 2012-05-15 11:26:58,777 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:58,777 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:26:58,777 DEBUG quick_setup running python command "as_nav" 2012-05-15 11:26:58,777 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2012 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/03/24 13:39:32 to 2012/05/15 09:09:31 /* the whole time range */ 2012-05-15 11:26:58,778 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2012-05-15 11:26:59,810 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:26:59,810 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:26:59,810 DEBUG quick_setup running python command "refabs" 2012-05-15 11:26:59,811 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2012 ensemble_length= 300 gap_tolerance= 10 2012-05-15 11:26:59,811 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2012-05-15 11:27:00,467 DEBUG quick_setup nav/smoothr.tmp exists 2012-05-15 11:27:00,467 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:00,467 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:27:00,468 DEBUG quick_setup running python command "smoothr" 2012-05-15 11:27:00,468 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-05-15 11:27:00,468 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2012-05-15 11:27:02,427 DEBUG quick_npy Starting: refsm 2012-05-15 11:27:04,602 DEBUG nav dtmin = -0.50 dtmax = 4.10 2012-05-15 11:27:07,250 DEBUG quick_npy Ending: refsm 2012-05-15 11:27:07,250 DEBUG quick_setup nav/putnav.tmp exists 2012-05-15 11:27:07,251 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:07,251 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:27:07,251 DEBUG quick_setup running python command "putnav" 2012-05-15 11:27:07,251 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2012 tolerance= 5 navigation_sources: gps end 2012-05-15 11:27:07,252 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2012-05-15 11:27:07,900 DEBUG quick_mpl Starting plot: nav 2012-05-15 11:27:09,790 DEBUG quick_mpl Ending plot: nav 2012-05-15 11:27:09,791 DEBUG quick_mpl Starting plot: refl 2012-05-15 11:27:11,603 DEBUG quick_mplplots found 51.802064 days of data 2012-05-15 11:27:11,603 DEBUG quick_mplplots start day is 83.000000 2012-05-15 11:27:11,604 DEBUG quick_mplplots figures with 2.000000 days per page 2012-05-15 11:27:11,604 DEBUG quick_mplplots printing 27 pages 2012-05-15 11:27:11,604 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-05-15 11:27:13,600 DEBUG quick_mpl Ending plot: refl 2012-05-15 11:27:13,601 INFO quick_adcp --------------------------------------------- 2012-05-15 11:27:13,602 INFO quick_adcp step 19: plot temperature 2012-05-15 11:27:13,602 DEBUG quick_setup edit/lst_temp.tmp exists 2012-05-15 11:27:13,602 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:13,603 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/edit 2012-05-15 11:27:13,603 DEBUG quick_setup running python command "lst_temp" 2012-05-15 11:27:13,603 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at.tem step_size= 1 year_base= 2012 time_ranges: all 2012-05-15 11:27:13,604 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2012-05-15 11:27:13,932 DEBUG quick_mpl Starting plot: temp 2012-05-15 11:27:14,777 DEBUG quick_mplplots plotting 14923 points 2012-05-15 11:27:16,215 DEBUG quick_mpl Ending plot: temp 2012-05-15 11:27:16,215 INFO quick_adcp --------------------------------------------- 2012-05-15 11:27:16,216 INFO quick_adcp step 20: run calibration steps 2012-05-15 11:27:16,216 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2012-05-15 11:27:16,221 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:16,221 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/cal/botmtrk 2012-05-15 11:27:16,221 DEBUG quick_setup running python command "lst_btrk" 2012-05-15 11:27:16,222 DEBUG quick_subs dbname: ../../adcpdb/a_at output: a_at.btm step_size= 1 year_base= 2012 time_ranges: 2012/03/24 13:39:32 to 2012/05/15 09:09:31 /* whole time range */ 2012-05-15 11:27:16,222 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2012-05-15 11:27:16,338 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2012-05-15 11:27:16,338 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:16,339 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/cal/botmtrk 2012-05-15 11:27:16,339 DEBUG quick_setup running python command "refabsbt" 2012-05-15 11:27:16,339 DEBUG quick_subs fix_file_type: simple reference_file: a_at.btm fix_file: ../../nav/a_at.gps output: a_at.ref year_base= 2012 ensemble_length= 300 gap_tolerance= 60 2012-05-15 11:27:16,340 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2012-05-15 11:27:16,457 DEBUG quick_mpl Starting plot: btcal 2012-05-15 11:27:17,236 DEBUG quick_mplplots Returning from Btplot with no good output 2012-05-15 11:27:17,236 DEBUG quick_mpl Ending plot: btcal 2012-05-15 11:27:17,236 DEBUG quick_setup nav/as_nav.tmp exists 2012-05-15 11:27:17,237 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:17,237 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/nav 2012-05-15 11:27:17,237 DEBUG quick_setup running python command "as_nav" 2012-05-15 11:27:17,237 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2012 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/03/24 13:39:32 to 2012/05/15 09:09:31 /* the whole time range */ 2012-05-15 11:27:17,238 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2012-05-15 11:27:17,840 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2012-05-15 11:27:17,840 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:17,841 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/cal/watertrk 2012-05-15 11:27:17,841 DEBUG quick_setup running python command "timslip" 2012-05-15 11:27:17,841 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_at.gps reference_file: ../../nav/a_at.nav output_file: a_at_7.cal year_base= 2012 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2012-05-15 11:27:17,842 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2012-05-15 11:27:17,987 DEBUG quick_mpl Starting plot: wtcal 2012-05-15 11:27:18,006 DEBUG quick_mplplots Found 323 calibration points 2012-05-15 11:27:21,391 DEBUG quick_mpl Ending plot: wtcal 2012-05-15 11:27:21,392 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:21,392 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/cal/watertrk 2012-05-15 11:27:21,393 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2012-05-15 11:27:21,393 DEBUG quick_npy Starting: guess_xducerxy 2012-05-15 11:27:23,376 DEBUG quick_npy Ending: guess_xducerxy 2012-05-15 11:27:23,377 INFO quick_adcp --------------------------------------------- 2012-05-15 11:27:23,377 INFO quick_adcp step 21: extract matlab "allbins" 2012-05-15 11:27:23,377 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2012-05-15 11:27:23,378 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:23,378 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/vector 2012-05-15 11:27:23,378 DEBUG quick_setup running python command "timegrid" 2012-05-15 11:27:23,379 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2012-05-15 11:27:23,398 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:23,399 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/vector 2012-05-15 11:27:23,399 DEBUG quick_setup running python command "as_vect" 2012-05-15 11:27:23,400 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2012-05-15 11:27:24,225 DEBUG quick_asect done making vector matfiles 2012-05-15 11:27:24,226 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:24,226 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/contour 2012-05-15 11:27:24,226 DEBUG quick_setup running python command "timegrid" 2012-05-15 11:27:24,227 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2012-05-15 11:27:24,298 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:24,298 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/contour 2012-05-15 11:27:24,298 DEBUG quick_setup running python command "as_cont" 2012-05-15 11:27:24,299 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2012-05-15 11:27:26,455 DEBUG quick_setup starting in /home/data/at20/proc/os75bb 2012-05-15 11:27:26,456 DEBUG quick_setup executing commands from /home/data/at20/proc/os75bb/contour 2012-05-15 11:27:26,456 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_at 2012-05-15 11:27:29,329 DEBUG quick_asect done running getmat with "allbins" 2012-05-15 11:27:29,330 INFO quick_adcp --------------------------------------------- 2012-05-15 11:27:29,330 INFO quick_adcp step 22: write "cruise_info.txt" 2012-05-15 11:27:30,071 INFO root copying NOFIG to /home/adcp/www/figures/os75bb_hcorr_plot.png 2012-05-15 11:27:30,072 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75bb_hcorr_plot_thumb.png 2012-05-15 11:27:30,072 DEBUG root matfile is contour/contour_uv.mat 2012-05-15 11:27:30,152 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75bb_cont_uv.mat 2012-05-15 11:27:30,154 DEBUG root matfile is vector/vector_uv.mat 2012-05-15 11:27:30,162 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75bb_vect_uv.mat 2012-05-15 11:27:30,162 DEBUG root matfile is contour/contour_xy.mat 2012-05-15 11:27:30,163 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75bb_cont_xy.mat 2012-05-15 11:27:30,163 DEBUG root matfile is vector/vector_xy.mat 2012-05-15 11:27:30,164 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75bb_vect_xy.mat 2012-05-15 11:27:30,169 DEBUG root about to copy file edit/a_at.tem to /home/adcp/www/data/os75bb_temp.asc 2012-05-15 11:27:30,172 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75bb_temp.asc 2012-05-15 11:27:38,953 DEBUG root about to copy netcdf file /home/data/at20/proc/os75bb/contour/os75bb.nc to /home/adcp/www/data/os75bb.nc 2012-05-15 11:27:39,043 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75bb.nc 2012-05-15 11:27:39,380 INFO root generating pingstats for os75bb 2012-05-15 11:27:39,380 INFO root Ending quick_adcp.py