2011-09-08 15:17:32,306 DEBUG root about to write control file parameters to --yearbase 2011 --pingtype nb --cfgbase at1810 --cruisename at1810 --instclass os --instname os75 --dbname a_at --datatype uhdas --datadir /home/data/at1810/raw/os75 --cfgpath /home/data/at1810/proc/os75nb/config --ens_len 300 --ping_headcor --hcorr_inst phins --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 2 --quiet --auto --npycalc all --mplplots all 2011-09-08 15:17:32,306 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2011-09-08 15:17:32,310 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2011-09-08 15:17:32,311 DEBUG quick_adcp progdir = /home/currents/programs 2011-09-08 15:17:32,311 DEBUG quick_adcp binos = lnx 2011-09-08 15:17:32,312 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2011-09-08 15:17:32,312 DEBUG quick_setup yearbase is 2011, proc_yearbase is 2011 2011-09-08 15:17:32,312 DEBUG quick_setup numpy calculations to run: refsm 2011-09-08 15:17:32,312 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2011-09-08 15:17:32,313 DEBUG quick_setup processing data logged with uhdas: 2011-09-08 15:17:32,313 DEBUG quick_setup datatype is uhdas 2011-09-08 15:17:32,313 DEBUG quick_setup pingtype is nb 2011-09-08 15:17:32,313 DEBUG quick_setup instclass is os 2011-09-08 15:17:32,313 DEBUG quick_setup no post-processing heading correction will be used 2011-09-08 15:17:32,314 DEBUG quick_setup transducer depth set in *_cfg.m file 2011-09-08 15:17:32,340 DEBUG quick_setup found (in edit/asetup.m): 2011-09-08 15:17:32,340 DEBUG quick_setup config.beamangle is 30 2011-09-08 15:17:32,341 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'at1810',... 'cfgpath' , '/home/data/at1810/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2011-09-08 15:17:32,341 DEBUG quick_setup ------- starting Matlab engine ------- 2011-09-08 15:17:32,341 DEBUG quick_setup ['/home/currents/programs/matlab'] 2011-09-08 15:17:32,347 DEBUG call_matlab starting to wait for initial prompt 2011-09-08 15:17:33,822 DEBUG call_matlab received initial prompt 2011-09-08 15:17:34,932 DEBUG quick_adcp cwd is /home/data/at1810/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-09-08 15:17:34,932 DEBUG quick_adcp original fix file is a_at.gps 2011-09-08 15:17:34,933 DEBUG quick_adcp smoothed nav file is a_at_refsm.asc 2011-09-08 15:17:34,933 DEBUG quick_asect extracting matlab files for os75, nb pings 2011-09-08 15:17:34,987 DEBUG quick_subs found 98 files using wildcard expansion from "/home/data/at1810/raw/os75/*.raw" 2011-09-08 15:17:34,987 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/at1810/raw/os75/at2011_240_78070.raw /home/data/at1810/raw/os75/at2011_242_58272.raw /home/data/at1810/raw/os75/at2011_242_64800.raw /home/data/at1810/raw/os75/at2011_242_72000.raw /home/data/at1810/raw/os75/at2011_242_79200.raw /home/data/at1810/raw/os75/at2011_243_00000.raw /home/data/at1810/raw/os75/at2011_243_07200.raw /home/data/at1810/raw/os75/at2011_243_14400.raw /home/data/at1810/raw/os75/at2011_243_21600.raw /home/data/at1810/raw/os75/at2011_243_28800.raw /home/data/at1810/raw/os75/at2011_243_36000.raw /home/data/at1810/raw/os75/at2011_243_43200.raw /home/data/at1810/raw/os75/at2011_243_50400.raw /home/data/at1810/raw/os75/at2011_243_57600.raw /home/data/at1810/raw/os75/at2011_243_64800.raw /home/data/at1810/raw/os75/at2011_243_72000.raw /home/data/at1810/raw/os75/at2011_243_79200.raw /home/data/at1810/raw/os75/at2011_244_00000.raw /home/data/at1810/raw/os75/at2011_244_07200.raw /home/data/at1810/raw/os75/at2011_244_14400.raw /home/data/at1810/raw/os75/at2011_244_21600.raw /home/data/at1810/raw/os75/at2011_244_28800.raw /home/data/at1810/raw/os75/at2011_244_36000.raw /home/data/at1810/raw/os75/at2011_244_43200.raw /home/data/at1810/raw/os75/at2011_244_50400.raw /home/data/at1810/raw/os75/at2011_244_57600.raw /home/data/at1810/raw/os75/at2011_244_64800.raw /home/data/at1810/raw/os75/at2011_244_72000.raw /home/data/at1810/raw/os75/at2011_244_79200.raw /home/data/at1810/raw/os75/at2011_245_00000.raw /home/data/at1810/raw/os75/at2011_245_07200.raw /home/data/at1810/raw/os75/at2011_245_14400.raw /home/data/at1810/raw/os75/at2011_245_21600.raw /home/data/at1810/raw/os75/at2011_245_28800.raw /home/data/at1810/raw/os75/at2011_245_36000.raw /home/data/at1810/raw/os75/at2011_245_43200.raw /home/data/at1810/raw/os75/at2011_245_50400.raw /home/data/at1810/raw/os75/at2011_245_57600.raw /home/data/at1810/raw/os75/at2011_245_64800.raw /home/data/at1810/raw/os75/at2011_245_72000.raw /home/data/at1810/raw/os75/at2011_245_79200.raw /home/data/at1810/raw/os75/at2011_246_00000.raw /home/data/at1810/raw/os75/at2011_246_07200.raw /home/data/at1810/raw/os75/at2011_246_14400.raw /home/data/at1810/raw/os75/at2011_246_21600.raw /home/data/at1810/raw/os75/at2011_246_28800.raw /home/data/at1810/raw/os75/at2011_246_36000.raw /home/data/at1810/raw/os75/at2011_246_43200.raw /home/data/at1810/raw/os75/at2011_246_50400.raw /home/data/at1810/raw/os75/at2011_246_57600.raw /home/data/at1810/raw/os75/at2011_246_64800.raw /home/data/at1810/raw/os75/at2011_246_72000.raw /home/data/at1810/raw/os75/at2011_246_79200.raw /home/data/at1810/raw/os75/at2011_247_00000.raw /home/data/at1810/raw/os75/at2011_247_07200.raw /home/data/at1810/raw/os75/at2011_247_14400.raw /home/data/at1810/raw/os75/at2011_247_21600.raw /home/data/at1810/raw/os75/at2011_247_28800.raw /home/data/at1810/raw/os75/at2011_247_36000.raw /home/data/at1810/raw/os75/at2011_247_43200.raw /home/data/at1810/raw/os75/at2011_247_50400.raw /home/data/at1810/raw/os75/at2011_247_57600.raw /home/data/at1810/raw/os75/at2011_247_64800.raw /home/data/at1810/raw/os75/at2011_247_72000.raw /home/data/at1810/raw/os75/at2011_247_79200.raw /home/data/at1810/raw/os75/at2011_248_00000.raw /home/data/at1810/raw/os75/at2011_248_07200.raw /home/data/at1810/raw/os75/at2011_248_14400.raw /home/data/at1810/raw/os75/at2011_248_21600.raw /home/data/at1810/raw/os75/at2011_248_28800.raw /home/data/at1810/raw/os75/at2011_248_36000.raw /home/data/at1810/raw/os75/at2011_248_43200.raw /home/data/at1810/raw/os75/at2011_248_50400.raw /home/data/at1810/raw/os75/at2011_248_57600.raw /home/data/at1810/raw/os75/at2011_248_64800.raw /home/data/at1810/raw/os75/at2011_248_72000.raw /home/data/at1810/raw/os75/at2011_248_79200.raw /home/data/at1810/raw/os75/at2011_249_00000.raw /home/data/at1810/raw/os75/at2011_249_07200.raw /home/data/at1810/raw/os75/at2011_249_14400.raw /home/data/at1810/raw/os75/at2011_249_21600.raw /home/data/at1810/raw/os75/at2011_249_28800.raw /home/data/at1810/raw/os75/at2011_249_36000.raw /home/data/at1810/raw/os75/at2011_249_43200.raw /home/data/at1810/raw/os75/at2011_249_50400.raw /home/data/at1810/raw/os75/at2011_249_57600.raw /home/data/at1810/raw/os75/at2011_249_64800.raw /home/data/at1810/raw/os75/at2011_249_72000.raw /home/data/at1810/raw/os75/at2011_249_79200.raw /home/data/at1810/raw/os75/at2011_250_00000.raw /home/data/at1810/raw/os75/at2011_250_07200.raw /home/data/at1810/raw/os75/at2011_250_14400.raw /home/data/at1810/raw/os75/at2011_250_21600.raw /home/data/at1810/raw/os75/at2011_250_28800.raw /home/data/at1810/raw/os75/at2011_250_36000.raw /home/data/at1810/raw/os75/at2011_250_43200.raw /home/data/at1810/raw/os75/at2011_250_46045.raw /home/data/at1810/raw/os75/at2011_250_50400.raw 2011-09-08 15:17:34,987 DEBUG quick_adcp LASTFILES invoked. using only 98 files from end of filelist 2011-09-08 15:17:34,988 DEBUG quick_adcp using delblks = 1 2011-09-08 15:17:34,988 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/at1810/raw/os75/at2011_240_78070.raw /home/data/at1810/raw/os75/at2011_242_58272.raw /home/data/at1810/raw/os75/at2011_242_64800.raw /home/data/at1810/raw/os75/at2011_242_72000.raw /home/data/at1810/raw/os75/at2011_242_79200.raw /home/data/at1810/raw/os75/at2011_243_00000.raw /home/data/at1810/raw/os75/at2011_243_07200.raw /home/data/at1810/raw/os75/at2011_243_14400.raw /home/data/at1810/raw/os75/at2011_243_21600.raw /home/data/at1810/raw/os75/at2011_243_28800.raw /home/data/at1810/raw/os75/at2011_243_36000.raw /home/data/at1810/raw/os75/at2011_243_43200.raw /home/data/at1810/raw/os75/at2011_243_50400.raw /home/data/at1810/raw/os75/at2011_243_57600.raw /home/data/at1810/raw/os75/at2011_243_64800.raw /home/data/at1810/raw/os75/at2011_243_72000.raw /home/data/at1810/raw/os75/at2011_243_79200.raw /home/data/at1810/raw/os75/at2011_244_00000.raw /home/data/at1810/raw/os75/at2011_244_07200.raw /home/data/at1810/raw/os75/at2011_244_14400.raw /home/data/at1810/raw/os75/at2011_244_21600.raw /home/data/at1810/raw/os75/at2011_244_28800.raw /home/data/at1810/raw/os75/at2011_244_36000.raw /home/data/at1810/raw/os75/at2011_244_43200.raw /home/data/at1810/raw/os75/at2011_244_50400.raw /home/data/at1810/raw/os75/at2011_244_57600.raw /home/data/at1810/raw/os75/at2011_244_64800.raw /home/data/at1810/raw/os75/at2011_244_72000.raw /home/data/at1810/raw/os75/at2011_244_79200.raw /home/data/at1810/raw/os75/at2011_245_00000.raw /home/data/at1810/raw/os75/at2011_245_07200.raw /home/data/at1810/raw/os75/at2011_245_14400.raw /home/data/at1810/raw/os75/at2011_245_21600.raw /home/data/at1810/raw/os75/at2011_245_28800.raw /home/data/at1810/raw/os75/at2011_245_36000.raw /home/data/at1810/raw/os75/at2011_245_43200.raw /home/data/at1810/raw/os75/at2011_245_50400.raw /home/data/at1810/raw/os75/at2011_245_57600.raw /home/data/at1810/raw/os75/at2011_245_64800.raw /home/data/at1810/raw/os75/at2011_245_72000.raw /home/data/at1810/raw/os75/at2011_245_79200.raw /home/data/at1810/raw/os75/at2011_246_00000.raw /home/data/at1810/raw/os75/at2011_246_07200.raw /home/data/at1810/raw/os75/at2011_246_14400.raw /home/data/at1810/raw/os75/at2011_246_21600.raw /home/data/at1810/raw/os75/at2011_246_28800.raw /home/data/at1810/raw/os75/at2011_246_36000.raw /home/data/at1810/raw/os75/at2011_246_43200.raw /home/data/at1810/raw/os75/at2011_246_50400.raw /home/data/at1810/raw/os75/at2011_246_57600.raw /home/data/at1810/raw/os75/at2011_246_64800.raw /home/data/at1810/raw/os75/at2011_246_72000.raw /home/data/at1810/raw/os75/at2011_246_79200.raw /home/data/at1810/raw/os75/at2011_247_00000.raw /home/data/at1810/raw/os75/at2011_247_07200.raw /home/data/at1810/raw/os75/at2011_247_14400.raw /home/data/at1810/raw/os75/at2011_247_21600.raw /home/data/at1810/raw/os75/at2011_247_28800.raw /home/data/at1810/raw/os75/at2011_247_36000.raw /home/data/at1810/raw/os75/at2011_247_43200.raw /home/data/at1810/raw/os75/at2011_247_50400.raw /home/data/at1810/raw/os75/at2011_247_57600.raw /home/data/at1810/raw/os75/at2011_247_64800.raw /home/data/at1810/raw/os75/at2011_247_72000.raw /home/data/at1810/raw/os75/at2011_247_79200.raw /home/data/at1810/raw/os75/at2011_248_00000.raw /home/data/at1810/raw/os75/at2011_248_07200.raw /home/data/at1810/raw/os75/at2011_248_14400.raw /home/data/at1810/raw/os75/at2011_248_21600.raw /home/data/at1810/raw/os75/at2011_248_28800.raw /home/data/at1810/raw/os75/at2011_248_36000.raw /home/data/at1810/raw/os75/at2011_248_43200.raw /home/data/at1810/raw/os75/at2011_248_50400.raw /home/data/at1810/raw/os75/at2011_248_57600.raw /home/data/at1810/raw/os75/at2011_248_64800.raw /home/data/at1810/raw/os75/at2011_248_72000.raw /home/data/at1810/raw/os75/at2011_248_79200.raw /home/data/at1810/raw/os75/at2011_249_00000.raw /home/data/at1810/raw/os75/at2011_249_07200.raw /home/data/at1810/raw/os75/at2011_249_14400.raw /home/data/at1810/raw/os75/at2011_249_21600.raw /home/data/at1810/raw/os75/at2011_249_28800.raw /home/data/at1810/raw/os75/at2011_249_36000.raw /home/data/at1810/raw/os75/at2011_249_43200.raw /home/data/at1810/raw/os75/at2011_249_50400.raw /home/data/at1810/raw/os75/at2011_249_57600.raw /home/data/at1810/raw/os75/at2011_249_64800.raw /home/data/at1810/raw/os75/at2011_249_72000.raw /home/data/at1810/raw/os75/at2011_249_79200.raw /home/data/at1810/raw/os75/at2011_250_00000.raw /home/data/at1810/raw/os75/at2011_250_07200.raw /home/data/at1810/raw/os75/at2011_250_14400.raw /home/data/at1810/raw/os75/at2011_250_21600.raw /home/data/at1810/raw/os75/at2011_250_28800.raw /home/data/at1810/raw/os75/at2011_250_36000.raw /home/data/at1810/raw/os75/at2011_250_43200.raw /home/data/at1810/raw/os75/at2011_250_46045.raw /home/data/at1810/raw/os75/at2011_250_50400.raw 2011-09-08 15:17:34,991 DEBUG quick_adcp Thu Sep 8 15:17:34 2011 running quick_adcp.py as follows: --cntfile /home/data/at1810/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_at cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 44 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_at allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase at1810 cfgpath /home/data/at1810/proc/os75nb/config cntfile /home/data/at1810/proc/os75nb/os75nb_qpy.cnt commands None cruisename at1810 data_def vmadcp.def datadir /home/data/at1810/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/at1810/raw/os75/at2011_240_78070.raw', '/home/data/at1810/raw/os75/at2011_242_58272.raw', '/home/data/at1810/raw/os75/at2011_242_64800.raw', '/home/data/at1810/raw/os75/at2011_242_72000.raw', '/home/data/at1810/raw/os75/at2011_242_79200.raw', '/home/data/at1810/raw/os75/at2011_243_00000.raw', '/home/data/at1810/raw/os75/at2011_243_07200.raw', '/home/data/at1810/raw/os75/at2011_243_14400.raw', '/home/data/at1810/raw/os75/at2011_243_21600.raw', '/home/data/at1810/raw/os75/at2011_243_28800.raw', '/home/data/at1810/raw/os75/at2011_243_36000.raw', '/home/data/at1810/raw/os75/at2011_243_43200.raw', '/home/data/at1810/raw/os75/at2011_243_50400.raw', '/home/data/at1810/raw/os75/at2011_243_57600.raw', '/home/data/at1810/raw/os75/at2011_243_64800.raw', '/home/data/at1810/raw/os75/at2011_243_72000.raw', '/home/data/at1810/raw/os75/at2011_243_79200.raw', '/home/data/at1810/raw/os75/at2011_244_00000.raw', '/home/data/at1810/raw/os75/at2011_244_07200.raw', '/home/data/at1810/raw/os75/at2011_244_14400.raw', '/home/data/at1810/raw/os75/at2011_244_21600.raw', '/home/data/at1810/raw/os75/at2011_244_28800.raw', '/home/data/at1810/raw/os75/at2011_244_36000.raw', '/home/data/at1810/raw/os75/at2011_244_43200.raw', '/home/data/at1810/raw/os75/at2011_244_50400.raw', '/home/data/at1810/raw/os75/at2011_244_57600.raw', 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'/home/data/at1810/raw/os75/at2011_249_43200.raw', '/home/data/at1810/raw/os75/at2011_249_50400.raw', '/home/data/at1810/raw/os75/at2011_249_57600.raw', '/home/data/at1810/raw/os75/at2011_249_64800.raw', '/home/data/at1810/raw/os75/at2011_249_72000.raw', '/home/data/at1810/raw/os75/at2011_249_79200.raw', '/home/data/at1810/raw/os75/at2011_250_00000.raw', '/home/data/at1810/raw/os75/at2011_250_07200.raw', '/home/data/at1810/raw/os75/at2011_250_14400.raw', '/home/data/at1810/raw/os75/at2011_250_21600.raw', '/home/data/at1810/raw/os75/at2011_250_28800.raw', '/home/data/at1810/raw/os75/at2011_250_36000.raw', '/home/data/at1810/raw/os75/at2011_250_43200.raw', '/home/data/at1810/raw/os75/at2011_250_46045.raw', '/home/data/at1810/raw/os75/at2011_250_50400.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 44 fixfile a_at.gps hcorr_inst phins head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'at1810',... 'cfgpath' , '/home/data/at1810/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_at.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2011 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/at1810/raw/os75/at2011_240_78070.raw', '/home/data/at1810/raw/os75/at2011_242_58272.raw', '/home/data/at1810/raw/os75/at2011_242_64800.raw', '/home/data/at1810/raw/os75/at2011_242_72000.raw', '/home/data/at1810/raw/os75/at2011_242_79200.raw', '/home/data/at1810/raw/os75/at2011_243_00000.raw', 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'/home/data/at1810/raw/os75/at2011_247_72000.raw', '/home/data/at1810/raw/os75/at2011_247_79200.raw', '/home/data/at1810/raw/os75/at2011_248_00000.raw', '/home/data/at1810/raw/os75/at2011_248_07200.raw', '/home/data/at1810/raw/os75/at2011_248_14400.raw', '/home/data/at1810/raw/os75/at2011_248_21600.raw', '/home/data/at1810/raw/os75/at2011_248_28800.raw', '/home/data/at1810/raw/os75/at2011_248_36000.raw', '/home/data/at1810/raw/os75/at2011_248_43200.raw', '/home/data/at1810/raw/os75/at2011_248_50400.raw', '/home/data/at1810/raw/os75/at2011_248_57600.raw', '/home/data/at1810/raw/os75/at2011_248_64800.raw', '/home/data/at1810/raw/os75/at2011_248_72000.raw', '/home/data/at1810/raw/os75/at2011_248_79200.raw', '/home/data/at1810/raw/os75/at2011_249_00000.raw', '/home/data/at1810/raw/os75/at2011_249_07200.raw', '/home/data/at1810/raw/os75/at2011_249_14400.raw', '/home/data/at1810/raw/os75/at2011_249_21600.raw', '/home/data/at1810/raw/os75/at2011_249_28800.raw', '/home/data/at1810/raw/os75/at2011_249_36000.raw', '/home/data/at1810/raw/os75/at2011_249_43200.raw', '/home/data/at1810/raw/os75/at2011_249_50400.raw', '/home/data/at1810/raw/os75/at2011_249_57600.raw', '/home/data/at1810/raw/os75/at2011_249_64800.raw', '/home/data/at1810/raw/os75/at2011_249_72000.raw', '/home/data/at1810/raw/os75/at2011_249_79200.raw', '/home/data/at1810/raw/os75/at2011_250_00000.raw', '/home/data/at1810/raw/os75/at2011_250_07200.raw', '/home/data/at1810/raw/os75/at2011_250_14400.raw', '/home/data/at1810/raw/os75/at2011_250_21600.raw', '/home/data/at1810/raw/os75/at2011_250_28800.raw', '/home/data/at1810/raw/os75/at2011_250_36000.raw', '/home/data/at1810/raw/os75/at2011_250_43200.raw', '/home/data/at1810/raw/os75/at2011_250_46045.raw', '/home/data/at1810/raw/os75/at2011_250_50400.raw'] setup_info False skip_avg True smfile a_at_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 2 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2011 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-09-08 15:17:34,991 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2011-09-08 15:17:34,992 DEBUG quick_run scanning files for time ranges... 2011-09-08 15:17:34,992 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb/scan 2011-09-08 15:17:34,992 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/scan 2011-09-08 15:17:34,992 DEBUG quick_setup running python command "scanraw" 2011-09-08 15:17:34,993 DEBUG call_matlab --> clear all 2011-09-08 15:17:35,005 DEBUG call_matlab <-- >> 2011-09-08 15:17:35,006 DEBUG call_matlab --> close all 2011-09-08 15:17:35,042 DEBUG call_matlab <-- >> 2011-09-08 15:17:35,042 DEBUG call_matlab --> cd /home/data/at1810/proc/os75nb/scan 2011-09-08 15:17:35,046 DEBUG call_matlab <-- >> 2011-09-08 15:17:35,046 DEBUG call_matlab --> scan_tmp 2011-09-08 15:17:36,460 DEBUG call_matlab <-- getting config files from "/home/data/at1810/proc/os75nb/config" running "at1810_cfg.m" running "at1810_proc.m" writing scan info to a_at.scn >> 2011-09-08 15:17:36,461 DEBUG quick_run writing time range from a_at.scn to a_at.tr 2011-09-08 15:17:36,461 DEBUG quick_run getting scan time range 2011-09-08 15:17:36,461 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,462 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/scan 2011-09-08 15:17:36,462 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,462 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,464 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,466 DEBUG quick_subs start_end_time 2011/08/29 21:41:12 to 2011/09/08 15:14:37 2011-09-08 15:17:36,466 DEBUG quick_subs dd0: 240.903611 dd1: 250.635150 2011-09-08 15:17:36,467 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,467 DEBUG quick_adcp looking for database with adcpdb/a_at*.blk 2011-09-08 15:17:36,469 DEBUG quick_adcp database found: listing blocks 2011-09-08 15:17:36,469 DEBUG quick_subs removing a_atdir.blk 2011-09-08 15:17:36,470 DEBUG quick_subs about to run mkblkdir 2011-09-08 15:17:36,470 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-09-08 15:17:36,470 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-09-08 15:17:36,488 DEBUG quick_subs database passes. 2011-09-08 15:17:36,489 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-09-08 15:17:36,489 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,489 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,489 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,490 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,491 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,491 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 14:44:04 2011-09-08 15:17:36,492 DEBUG quick_subs dd0: 242.677940 dd1: 250.613935 2011-09-08 15:17:36,492 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-09-08 15:17:36,492 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,493 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,493 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,493 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,494 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,494 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 14:44:04 2011-09-08 15:17:36,495 DEBUG quick_subs dd0: 242.677940 dd1: 250.613935 2011-09-08 15:17:36,495 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2011-09-08 15:17:36,495 DEBUG quick_adcp origdb_time_range is 2011/08/31 16:16:14 to 2011/09/08 14:44:04 2011-09-08 15:17:36,496 DEBUG quick_adcp (242.677940 to 250.613935) 2011-09-08 15:17:36,496 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2011-09-08 15:17:36,497 DEBUG quick_subs getting current (remaining after deletion) database times 2011-09-08 15:17:36,497 DEBUG quick_subs ['adcpdb/a_at015.blk', 'adcpdb/a_at005.blk', 'adcpdb/a_at004.blk', 'adcpdb/a_at010.blk', 'adcpdb/a_at009.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at012.blk', 'adcpdb/a_at017.blk', 'adcpdb/a_atdir.blk', 'adcpdb/a_at011.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at007.blk', 'adcpdb/a_at014.blk', 'adcpdb/a_at008.blk', 'adcpdb/a_at016.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at006.blk', 'adcpdb/a_at013.blk'] 2011-09-08 15:17:36,497 DEBUG quick_subs length is 18 2011-09-08 15:17:36,498 DEBUG quick_subs removing a_atdir.blk 2011-09-08 15:17:36,498 DEBUG quick_subs about to run mkblkdir 2011-09-08 15:17:36,498 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-09-08 15:17:36,499 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-09-08 15:17:36,515 DEBUG quick_subs database passes. 2011-09-08 15:17:36,516 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-09-08 15:17:36,516 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,516 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,517 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,517 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,518 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,518 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 14:44:04 2011-09-08 15:17:36,519 DEBUG quick_subs dd0: 242.677940 dd1: 250.613935 2011-09-08 15:17:36,519 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,519 DEBUG quick_subs reading time range 2011-09-08 15:17:36,520 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 14:44:04 2011-09-08 15:17:36,520 DEBUG quick_subs dd0: 242.677940 dd1: 250.613935 2011-09-08 15:17:36,521 INFO quick_subs Thu Sep 8 15:17:36 2011 2011-09-08 15:17:36,521 INFO quick_subs checking database time range by listblk 2011-09-08 15:17:36,521 DEBUG quick_subs removing a_atdir.blk 2011-09-08 15:17:36,522 DEBUG quick_subs about to run mkblkdir 2011-09-08 15:17:36,522 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-09-08 15:17:36,523 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-09-08 15:17:36,539 DEBUG quick_subs database passes. 2011-09-08 15:17:36,539 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-09-08 15:17:36,540 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,540 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,540 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,540 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,541 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,542 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 14:44:04 2011-09-08 15:17:36,542 DEBUG quick_subs dd0: 242.677940 dd1: 250.613935 2011-09-08 15:17:36,545 INFO quick_subs found line /* 0 n= 146 a_at001.blk */ 2011/08/31 16:16:14 to 2011/09/01 04:23:02 2011-09-08 15:17:36,545 INFO quick_subs found line /* 1 n= 146 a_at002.blk */ 2011/09/01 04:28:03 to 2011/09/01 16:35:21 2011-09-08 15:17:36,545 INFO quick_subs found line /* 2 n= 146 a_at003.blk */ 2011/09/01 16:40:22 to 2011/09/02 04:47:37 2011-09-08 15:17:36,546 INFO quick_subs found line /* 3 n= 146 a_at004.blk */ 2011/09/02 04:52:38 to 2011/09/02 16:59:58 2011-09-08 15:17:36,546 INFO quick_subs found line /* 4 n= 146 a_at005.blk */ 2011/09/02 17:04:59 to 2011/09/03 05:12:11 2011-09-08 15:17:36,546 INFO quick_subs found line /* 5 n= 146 a_at006.blk */ 2011/09/03 05:17:12 to 2011/09/03 17:24:24 2011-09-08 15:17:36,547 INFO quick_subs found line /* 6 n= 146 a_at007.blk */ 2011/09/03 17:29:25 to 2011/09/04 05:42:10 2011-09-08 15:17:36,547 INFO quick_subs found line /* 7 n= 146 a_at008.blk */ 2011/09/04 05:47:11 to 2011/09/04 17:55:03 2011-09-08 15:17:36,547 INFO quick_subs found line /* 8 n= 146 a_at009.blk */ 2011/09/04 18:00:04 to 2011/09/05 06:07:58 2011-09-08 15:17:36,548 INFO quick_subs found line /* 9 n= 146 a_at010.blk */ 2011/09/05 06:13:00 to 2011/09/05 18:20:55 2011-09-08 15:17:36,548 INFO quick_subs found line /* 10 n= 146 a_at011.blk */ 2011/09/05 18:25:56 to 2011/09/06 06:33:50 2011-09-08 15:17:36,548 INFO quick_subs found line /* 11 n= 146 a_at012.blk */ 2011/09/06 06:38:52 to 2011/09/06 18:46:48 2011-09-08 15:17:36,548 INFO quick_subs found line /* 12 n= 146 a_at013.blk */ 2011/09/06 18:51:49 to 2011/09/07 06:59:31 2011-09-08 15:17:36,549 INFO quick_subs found line /* 13 n= 146 a_at014.blk */ 2011/09/07 07:04:32 to 2011/09/07 19:12:33 2011-09-08 15:17:36,549 INFO quick_subs found line /* 14 n= 146 a_at015.blk */ 2011/09/07 19:17:35 to 2011/09/08 07:25:27 2011-09-08 15:17:36,549 INFO quick_subs found line /* 15 n= 64 a_at016.blk */ 2011/09/08 07:30:28 to 2011/09/08 12:46:19 2011-09-08 15:17:36,549 INFO quick_subs found line /* 16 n= 23 a_at017.blk */ 2011/09/08 12:52:35 to 2011/09/08 14:44:04 2011-09-08 15:17:36,550 INFO quick_subs scan data start at 240.9036111 2011-09-08 15:17:36,550 INFO quick_subs scan time range: 2011/08/29 21:41:12 to 2011/09/08 15:14:37 2011-09-08 15:17:36,550 INFO quick_subs codasdb ends at 250.6139352 (2011/09/08 14:44:04) 2011-09-08 15:17:36,551 DEBUG quick_subs ... changed dirs, in /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,551 DEBUG quick_subs deleting these files: ['a_at017.blk'] 2011-09-08 15:17:36,552 DEBUG quick_subs getting current (remaining after deletion) database times 2011-09-08 15:17:36,553 DEBUG quick_subs ['adcpdb/a_at015.blk', 'adcpdb/a_at005.blk', 'adcpdb/a_at004.blk', 'adcpdb/a_at010.blk', 'adcpdb/a_at009.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at012.blk', 'adcpdb/a_at011.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at007.blk', 'adcpdb/a_at014.blk', 'adcpdb/a_at008.blk', 'adcpdb/a_at016.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at006.blk', 'adcpdb/a_at013.blk'] 2011-09-08 15:17:36,553 DEBUG quick_subs length is 16 2011-09-08 15:17:36,553 DEBUG quick_subs about to run mkblkdir 2011-09-08 15:17:36,554 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-09-08 15:17:36,554 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-09-08 15:17:36,570 DEBUG quick_subs database passes. 2011-09-08 15:17:36,571 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-09-08 15:17:36,571 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,572 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,572 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,572 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,573 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,574 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 12:46:19 2011-09-08 15:17:36,574 DEBUG quick_subs dd0: 242.677940 dd1: 250.532164 2011-09-08 15:17:36,574 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,575 DEBUG quick_subs reading time range 2011-09-08 15:17:36,575 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 12:46:19 2011-09-08 15:17:36,575 DEBUG quick_subs dd0: 242.677940 dd1: 250.532164 2011-09-08 15:17:36,576 DEBUG quick_subs codas database currently goes from 2011/08/31 16:16:14 to 2011/09/08 12:46:19 2011-09-08 15:17:36,576 DEBUG quick_subs (242.677940 to 250.532164) 2011-09-08 15:17:36,577 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016 2011-09-08 15:17:36,578 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 2011-09-08 15:17:36,579 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016'] 2011-09-08 15:17:36,580 DEBUG quick_subs checked: unloaded blkstrs: ['017'] 2011-09-08 15:17:36,580 DEBUG quick_subs first unloaded file is load/ens_blk017.cmd 2011-09-08 15:17:36,581 DEBUG quick_subs data goes from 2011/09/08 12:52:35 to 2011/09/08 15:14:37 2011-09-08 15:17:36,581 DEBUG quick_subs (250.536516 to 250.635150) 2011-09-08 15:17:36,581 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/at1810/raw/os75/at2011_240_78070.raw /home/data/at1810/raw/os75/at2011_242_58272.raw /home/data/at1810/raw/os75/at2011_242_64800.raw /home/data/at1810/raw/os75/at2011_242_72000.raw /home/data/at1810/raw/os75/at2011_242_79200.raw /home/data/at1810/raw/os75/at2011_243_00000.raw /home/data/at1810/raw/os75/at2011_243_07200.raw /home/data/at1810/raw/os75/at2011_243_14400.raw /home/data/at1810/raw/os75/at2011_243_21600.raw /home/data/at1810/raw/os75/at2011_243_28800.raw /home/data/at1810/raw/os75/at2011_243_36000.raw /home/data/at1810/raw/os75/at2011_243_43200.raw /home/data/at1810/raw/os75/at2011_243_50400.raw /home/data/at1810/raw/os75/at2011_243_57600.raw /home/data/at1810/raw/os75/at2011_243_64800.raw /home/data/at1810/raw/os75/at2011_243_72000.raw /home/data/at1810/raw/os75/at2011_243_79200.raw /home/data/at1810/raw/os75/at2011_244_00000.raw /home/data/at1810/raw/os75/at2011_244_07200.raw /home/data/at1810/raw/os75/at2011_244_14400.raw /home/data/at1810/raw/os75/at2011_244_21600.raw /home/data/at1810/raw/os75/at2011_244_28800.raw /home/data/at1810/raw/os75/at2011_244_36000.raw /home/data/at1810/raw/os75/at2011_244_43200.raw /home/data/at1810/raw/os75/at2011_244_50400.raw /home/data/at1810/raw/os75/at2011_244_57600.raw /home/data/at1810/raw/os75/at2011_244_64800.raw /home/data/at1810/raw/os75/at2011_244_72000.raw /home/data/at1810/raw/os75/at2011_244_79200.raw /home/data/at1810/raw/os75/at2011_245_00000.raw /home/data/at1810/raw/os75/at2011_245_07200.raw /home/data/at1810/raw/os75/at2011_245_14400.raw /home/data/at1810/raw/os75/at2011_245_21600.raw /home/data/at1810/raw/os75/at2011_245_28800.raw /home/data/at1810/raw/os75/at2011_245_36000.raw /home/data/at1810/raw/os75/at2011_245_43200.raw /home/data/at1810/raw/os75/at2011_245_50400.raw /home/data/at1810/raw/os75/at2011_245_57600.raw /home/data/at1810/raw/os75/at2011_245_64800.raw /home/data/at1810/raw/os75/at2011_245_72000.raw /home/data/at1810/raw/os75/at2011_245_79200.raw /home/data/at1810/raw/os75/at2011_246_00000.raw /home/data/at1810/raw/os75/at2011_246_07200.raw /home/data/at1810/raw/os75/at2011_246_14400.raw /home/data/at1810/raw/os75/at2011_246_21600.raw /home/data/at1810/raw/os75/at2011_246_28800.raw /home/data/at1810/raw/os75/at2011_246_36000.raw /home/data/at1810/raw/os75/at2011_246_43200.raw /home/data/at1810/raw/os75/at2011_246_50400.raw /home/data/at1810/raw/os75/at2011_246_57600.raw /home/data/at1810/raw/os75/at2011_246_64800.raw /home/data/at1810/raw/os75/at2011_246_72000.raw /home/data/at1810/raw/os75/at2011_246_79200.raw /home/data/at1810/raw/os75/at2011_247_00000.raw /home/data/at1810/raw/os75/at2011_247_07200.raw /home/data/at1810/raw/os75/at2011_247_14400.raw /home/data/at1810/raw/os75/at2011_247_21600.raw /home/data/at1810/raw/os75/at2011_247_28800.raw /home/data/at1810/raw/os75/at2011_247_36000.raw /home/data/at1810/raw/os75/at2011_247_43200.raw /home/data/at1810/raw/os75/at2011_247_50400.raw /home/data/at1810/raw/os75/at2011_247_57600.raw /home/data/at1810/raw/os75/at2011_247_64800.raw /home/data/at1810/raw/os75/at2011_247_72000.raw /home/data/at1810/raw/os75/at2011_247_79200.raw /home/data/at1810/raw/os75/at2011_248_00000.raw /home/data/at1810/raw/os75/at2011_248_07200.raw /home/data/at1810/raw/os75/at2011_248_14400.raw /home/data/at1810/raw/os75/at2011_248_21600.raw /home/data/at1810/raw/os75/at2011_248_28800.raw /home/data/at1810/raw/os75/at2011_248_36000.raw /home/data/at1810/raw/os75/at2011_248_43200.raw /home/data/at1810/raw/os75/at2011_248_50400.raw /home/data/at1810/raw/os75/at2011_248_57600.raw /home/data/at1810/raw/os75/at2011_248_64800.raw /home/data/at1810/raw/os75/at2011_248_72000.raw /home/data/at1810/raw/os75/at2011_248_79200.raw /home/data/at1810/raw/os75/at2011_249_00000.raw /home/data/at1810/raw/os75/at2011_249_07200.raw /home/data/at1810/raw/os75/at2011_249_14400.raw /home/data/at1810/raw/os75/at2011_249_21600.raw /home/data/at1810/raw/os75/at2011_249_28800.raw /home/data/at1810/raw/os75/at2011_249_36000.raw /home/data/at1810/raw/os75/at2011_249_43200.raw /home/data/at1810/raw/os75/at2011_249_50400.raw /home/data/at1810/raw/os75/at2011_249_57600.raw /home/data/at1810/raw/os75/at2011_249_64800.raw /home/data/at1810/raw/os75/at2011_249_72000.raw /home/data/at1810/raw/os75/at2011_249_79200.raw /home/data/at1810/raw/os75/at2011_250_00000.raw /home/data/at1810/raw/os75/at2011_250_07200.raw /home/data/at1810/raw/os75/at2011_250_14400.raw /home/data/at1810/raw/os75/at2011_250_21600.raw /home/data/at1810/raw/os75/at2011_250_28800.raw /home/data/at1810/raw/os75/at2011_250_36000.raw /home/data/at1810/raw/os75/at2011_250_43200.raw /home/data/at1810/raw/os75/at2011_250_46045.raw /home/data/at1810/raw/os75/at2011_250_50400.raw 2011-09-08 15:17:36,582 INFO quick_run Thu Sep 8 15:17:36 2011 2011-09-08 15:17:36,582 INFO quick_run about to load uhdas files 2011-09-08 15:17:36,582 INFO quick_run /home/data/at1810/raw/os75/at2011_240_78070.raw /home/data/at1810/raw/os75/at2011_242_58272.raw /home/data/at1810/raw/os75/at2011_242_64800.raw /home/data/at1810/raw/os75/at2011_242_72000.raw /home/data/at1810/raw/os75/at2011_242_79200.raw /home/data/at1810/raw/os75/at2011_243_00000.raw /home/data/at1810/raw/os75/at2011_243_07200.raw /home/data/at1810/raw/os75/at2011_243_14400.raw /home/data/at1810/raw/os75/at2011_243_21600.raw /home/data/at1810/raw/os75/at2011_243_28800.raw /home/data/at1810/raw/os75/at2011_243_36000.raw /home/data/at1810/raw/os75/at2011_243_43200.raw /home/data/at1810/raw/os75/at2011_243_50400.raw /home/data/at1810/raw/os75/at2011_243_57600.raw /home/data/at1810/raw/os75/at2011_243_64800.raw /home/data/at1810/raw/os75/at2011_243_72000.raw /home/data/at1810/raw/os75/at2011_243_79200.raw /home/data/at1810/raw/os75/at2011_244_00000.raw /home/data/at1810/raw/os75/at2011_244_07200.raw /home/data/at1810/raw/os75/at2011_244_14400.raw /home/data/at1810/raw/os75/at2011_244_21600.raw /home/data/at1810/raw/os75/at2011_244_28800.raw /home/data/at1810/raw/os75/at2011_244_36000.raw /home/data/at1810/raw/os75/at2011_244_43200.raw /home/data/at1810/raw/os75/at2011_244_50400.raw /home/data/at1810/raw/os75/at2011_244_57600.raw /home/data/at1810/raw/os75/at2011_244_64800.raw /home/data/at1810/raw/os75/at2011_244_72000.raw /home/data/at1810/raw/os75/at2011_244_79200.raw /home/data/at1810/raw/os75/at2011_245_00000.raw /home/data/at1810/raw/os75/at2011_245_07200.raw /home/data/at1810/raw/os75/at2011_245_14400.raw /home/data/at1810/raw/os75/at2011_245_21600.raw /home/data/at1810/raw/os75/at2011_245_28800.raw /home/data/at1810/raw/os75/at2011_245_36000.raw /home/data/at1810/raw/os75/at2011_245_43200.raw /home/data/at1810/raw/os75/at2011_245_50400.raw /home/data/at1810/raw/os75/at2011_245_57600.raw /home/data/at1810/raw/os75/at2011_245_64800.raw /home/data/at1810/raw/os75/at2011_245_72000.raw /home/data/at1810/raw/os75/at2011_245_79200.raw /home/data/at1810/raw/os75/at2011_246_00000.raw /home/data/at1810/raw/os75/at2011_246_07200.raw /home/data/at1810/raw/os75/at2011_246_14400.raw /home/data/at1810/raw/os75/at2011_246_21600.raw /home/data/at1810/raw/os75/at2011_246_28800.raw /home/data/at1810/raw/os75/at2011_246_36000.raw /home/data/at1810/raw/os75/at2011_246_43200.raw /home/data/at1810/raw/os75/at2011_246_50400.raw /home/data/at1810/raw/os75/at2011_246_57600.raw /home/data/at1810/raw/os75/at2011_246_64800.raw /home/data/at1810/raw/os75/at2011_246_72000.raw /home/data/at1810/raw/os75/at2011_246_79200.raw /home/data/at1810/raw/os75/at2011_247_00000.raw /home/data/at1810/raw/os75/at2011_247_07200.raw /home/data/at1810/raw/os75/at2011_247_14400.raw /home/data/at1810/raw/os75/at2011_247_21600.raw /home/data/at1810/raw/os75/at2011_247_28800.raw /home/data/at1810/raw/os75/at2011_247_36000.raw /home/data/at1810/raw/os75/at2011_247_43200.raw /home/data/at1810/raw/os75/at2011_247_50400.raw /home/data/at1810/raw/os75/at2011_247_57600.raw /home/data/at1810/raw/os75/at2011_247_64800.raw /home/data/at1810/raw/os75/at2011_247_72000.raw /home/data/at1810/raw/os75/at2011_247_79200.raw /home/data/at1810/raw/os75/at2011_248_00000.raw /home/data/at1810/raw/os75/at2011_248_07200.raw /home/data/at1810/raw/os75/at2011_248_14400.raw /home/data/at1810/raw/os75/at2011_248_21600.raw /home/data/at1810/raw/os75/at2011_248_28800.raw /home/data/at1810/raw/os75/at2011_248_36000.raw /home/data/at1810/raw/os75/at2011_248_43200.raw /home/data/at1810/raw/os75/at2011_248_50400.raw /home/data/at1810/raw/os75/at2011_248_57600.raw /home/data/at1810/raw/os75/at2011_248_64800.raw /home/data/at1810/raw/os75/at2011_248_72000.raw /home/data/at1810/raw/os75/at2011_248_79200.raw /home/data/at1810/raw/os75/at2011_249_00000.raw /home/data/at1810/raw/os75/at2011_249_07200.raw /home/data/at1810/raw/os75/at2011_249_14400.raw /home/data/at1810/raw/os75/at2011_249_21600.raw /home/data/at1810/raw/os75/at2011_249_28800.raw /home/data/at1810/raw/os75/at2011_249_36000.raw /home/data/at1810/raw/os75/at2011_249_43200.raw /home/data/at1810/raw/os75/at2011_249_50400.raw /home/data/at1810/raw/os75/at2011_249_57600.raw /home/data/at1810/raw/os75/at2011_249_64800.raw /home/data/at1810/raw/os75/at2011_249_72000.raw /home/data/at1810/raw/os75/at2011_249_79200.raw /home/data/at1810/raw/os75/at2011_250_00000.raw /home/data/at1810/raw/os75/at2011_250_07200.raw /home/data/at1810/raw/os75/at2011_250_14400.raw /home/data/at1810/raw/os75/at2011_250_21600.raw /home/data/at1810/raw/os75/at2011_250_28800.raw /home/data/at1810/raw/os75/at2011_250_36000.raw /home/data/at1810/raw/os75/at2011_250_43200.raw /home/data/at1810/raw/os75/at2011_250_46045.raw /home/data/at1810/raw/os75/at2011_250_50400.raw 2011-09-08 15:17:36,583 DEBUG quick_setup load/ldcodas.tmp exists 2011-09-08 15:17:36,583 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,583 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/load 2011-09-08 15:17:36,583 DEBUG quick_setup running python command "ldcodas" 2011-09-08 15:17:36,584 DEBUG quick_subs in /home/data/at1810/proc/os75nb/load 2011-09-08 15:17:36,584 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016'] 2011-09-08 15:17:36,585 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017'] 2011-09-08 15:17:36,586 DEBUG quick_subs starttime is 2011/09/08 12:52:35 2011-09-08 15:17:36,586 DEBUG quick_subs RESETTING thisload_time_range 2011-09-08 15:17:36,587 DEBUG quick_subs time range of data to be loaded: 2011/09/08 12:52:35 to 2011/09/08 15:14:37 2011-09-08 15:17:36,587 DEBUG quick_subs data startdd 250.536516 data enddd 250.635150 2011-09-08 15:17:36,587 DEBUG quick_subs about to load from these cmd files ['ens_blk017.cmd'] 2011-09-08 15:17:36,587 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk017.cmd 2011-09-08 15:17:36,588 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2011-09-08 15:17:36,609 DEBUG quick_subs removing a_atdir.blk 2011-09-08 15:17:36,610 DEBUG quick_subs about to run mkblkdir 2011-09-08 15:17:36,610 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-09-08 15:17:36,610 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-09-08 15:17:36,626 DEBUG quick_subs database passes. 2011-09-08 15:17:36,627 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-09-08 15:17:36,627 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,627 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,628 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,628 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,629 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,629 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 15:14:24 2011-09-08 15:17:36,629 DEBUG quick_subs dd0: 242.677940 dd1: 250.635000 2011-09-08 15:17:36,630 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-09-08 15:17:36,630 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,630 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,631 DEBUG quick_setup running python command "get_time_range" 2011-09-08 15:17:36,631 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-09-08 15:17:36,632 DEBUG quick_subs extracting time range 2011-09-08 15:17:36,632 DEBUG quick_subs start_end_time 2011/08/31 16:16:14 to 2011/09/08 15:14:24 2011-09-08 15:17:36,632 DEBUG quick_subs dd0: 242.677940 dd1: 250.635000 2011-09-08 15:17:36,633 DEBUG quick_adcp loaded_time_range is 2011/08/31 16:16:14 to 2011/09/08 15:14:24 2011-09-08 15:17:36,633 DEBUG quick_adcp (242.677940 to 250.635000) 2011-09-08 15:17:36,633 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,634 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/adcpdb 2011-09-08 15:17:36,634 DEBUG quick_setup running python command "lst_conf" 2011-09-08 15:17:36,634 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2011-09-08 15:17:36,635 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2011-09-08 15:17:36,664 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2011-09-08 15:17:36,665 DEBUG quick_run executing commands from /home/data/at1810/proc/os75nb/edit 2011-09-08 15:17:36,665 DEBUG quick_run setup.m exists. not replacing 2011-09-08 15:17:36,665 DEBUG quick_run asetup.m exists. not replacing 2011-09-08 15:17:36,666 DEBUG quick_run aflagit_setup.m exists. not replacing 2011-09-08 15:17:36,666 DEBUG quick_run ------------ step 4: run setflags ------------- 2011-09-08 15:17:36,666 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,666 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/edit 2011-09-08 15:17:36,667 DEBUG quick_setup running python command "setflags" 2011-09-08 15:17:36,667 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2011-09-08 15:17:36,667 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-09-08 15:17:36,736 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2011-09-08 15:17:36,737 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,737 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:36,737 DEBUG quick_setup running python command "catnav" 2011-09-08 15:17:36,742 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2011-09-08 15:17:36,742 DEBUG quick_run hcorr_inst is phins 2011-09-08 15:17:36,742 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2011-09-08 15:17:36,743 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,743 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/cal/rotate 2011-09-08 15:17:36,743 DEBUG quick_setup running python command "lst_hdg" 2011-09-08 15:17:36,743 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2011-09-08 15:17:36,744 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2011-09-08 15:17:36,791 DEBUG quick_run no available heading correction function specified 2011-09-08 15:17:36,791 DEBUG quick_run ------------ step 7: rotate ------------- 2011-09-08 15:17:36,792 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,792 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/cal/rotate 2011-09-08 15:17:36,792 DEBUG quick_setup running python command "rotated" 2011-09-08 15:17:36,831 DEBUG quick_subs last rotated time from log file: 2011/09/08 14:44:18 2011-09-08 15:17:36,832 DEBUG quick_subs time range of currently loaded data: 2011/08/31 16:16:14 to 2011/09/08 15:14:24 2011-09-08 15:17:36,832 DEBUG quick_subs (242.677940 to 250.635000) 2011-09-08 15:17:36,833 DEBUG quick_setup cal/rotate/rotate.tmp exists 2011-09-08 15:17:36,834 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,834 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/cal/rotate 2011-09-08 15:17:36,834 DEBUG quick_setup running python command "rotate" 2011-09-08 15:17:36,834 DEBUG quick_subs DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2011/09/08 12:52:35 to 2011/09/08 15:14:37 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2011-09-08 15:17:36,835 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2011-09-08 15:17:36,844 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-09-08 15:17:36,845 DEBUG quick_setup nav/as_nav.tmp exists 2011-09-08 15:17:36,845 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,845 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:36,845 DEBUG quick_setup running python command "as_nav" 2011-09-08 15:17:36,846 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/08/31 16:16:14 to 2011/09/08 15:14:24 /* the whole time range */ 2011-09-08 15:17:36,846 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-09-08 15:17:36,936 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-09-08 15:17:36,937 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:36,937 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:36,938 DEBUG quick_setup running python command "refabs" 2011-09-08 15:17:36,938 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-09-08 15:17:36,938 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-09-08 15:17:37,000 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-09-08 15:17:37,000 DEBUG quick_setup nav/smoothr.tmp exists 2011-09-08 15:17:37,001 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:37,001 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:37,005 DEBUG quick_setup running python command "smoothr" 2011-09-08 15:17:37,005 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-09-08 15:17:37,005 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-09-08 15:17:37,376 DEBUG quick_adcp about to run numpy refsm 2011-09-08 15:17:37,377 DEBUG quick_npy Starting: refsm 2011-09-08 15:17:37,593 INFO nav dtmin = -0.50 dtmax = 0.50 2011-09-08 15:17:38,080 DEBUG quick_npy Ending: refsm 2011-09-08 15:17:38,080 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-09-08 15:17:38,081 DEBUG quick_setup nav/putnav.tmp exists 2011-09-08 15:17:38,081 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:38,081 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:38,081 DEBUG quick_setup running python command "putnav" 2011-09-08 15:17:38,082 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-09-08 15:17:38,082 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-09-08 15:17:38,182 DEBUG quick_adcp plotting navigation 2011-09-08 15:17:38,183 DEBUG quick_mpl Starting plot: nav 2011-09-08 15:17:39,098 DEBUG quick_mpl Ending plot: nav 2011-09-08 15:17:39,098 DEBUG quick_mpl Starting plot: refl 2011-09-08 15:17:39,576 DEBUG quick_mplplots found 7.841704 days of data 2011-09-08 15:17:39,576 DEBUG quick_mplplots start day is 242.000000 2011-09-08 15:17:39,577 DEBUG quick_mplplots figures with 2.000000 days per page 2011-09-08 15:17:39,577 DEBUG quick_mplplots printing 5 pages 2011-09-08 15:17:39,577 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-09-08 15:17:39,577 INFO quick_mplplots startdd is 242.0 2011-09-08 15:17:39,578 INFO quick_mplplots dt is 2.0 2011-09-08 15:17:44,876 DEBUG quick_mpl Ending plot: refl 2011-09-08 15:17:44,876 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2011-09-08 15:17:44,877 DEBUG quick_run find profile flags ------------ *** ------------- 2011-09-08 15:17:44,877 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:44,877 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/edit 2011-09-08 15:17:44,877 DEBUG quick_setup running python command "aedit" 2011-09-08 15:17:47,521 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2011-09-08 15:17:47,521 DEBUG quick_run starting in: /home/data/at1810/proc/os75nb 2011-09-08 15:17:47,521 DEBUG quick_run executing commands from: edit 2011-09-08 15:17:47,526 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_at abadprf_tmp.asc 2011-09-08 15:17:47,536 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_at abadbin_tmp.asc 2011-09-08 15:17:47,548 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_at 30 2011-09-08 15:17:47,558 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-09-08 15:17:47,629 DEBUG quick_run changing directories back to /home/data/at1810/proc/os75nb 2011-09-08 15:17:47,629 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2011-09-08 15:17:47,630 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-09-08 15:17:47,630 DEBUG quick_setup nav/as_nav.tmp exists 2011-09-08 15:17:47,630 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:47,631 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:47,631 DEBUG quick_setup running python command "as_nav" 2011-09-08 15:17:47,631 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/08/31 16:16:14 to 2011/09/08 15:14:24 /* the whole time range */ 2011-09-08 15:17:47,632 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-09-08 15:17:47,723 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-09-08 15:17:47,724 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:47,724 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:47,725 DEBUG quick_setup running python command "refabs" 2011-09-08 15:17:47,725 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-09-08 15:17:47,725 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-09-08 15:17:47,788 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-09-08 15:17:47,789 DEBUG quick_setup nav/smoothr.tmp exists 2011-09-08 15:17:47,789 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:47,789 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:47,790 DEBUG quick_setup running python command "smoothr" 2011-09-08 15:17:47,790 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-09-08 15:17:47,790 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-09-08 15:17:48,095 DEBUG quick_adcp running refsm 2011-09-08 15:17:48,096 DEBUG quick_npy Starting: refsm 2011-09-08 15:17:48,312 INFO nav dtmin = -0.50 dtmax = 0.50 2011-09-08 15:17:48,704 DEBUG quick_npy Ending: refsm 2011-09-08 15:17:48,705 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-09-08 15:17:48,705 DEBUG quick_setup nav/putnav.tmp exists 2011-09-08 15:17:48,705 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:48,705 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:48,706 DEBUG quick_setup running python command "putnav" 2011-09-08 15:17:48,706 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-09-08 15:17:48,706 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-09-08 15:17:48,808 DEBUG quick_mpl Starting plot: nav 2011-09-08 15:17:50,250 DEBUG quick_mpl Ending plot: nav 2011-09-08 15:17:50,255 DEBUG quick_mpl Starting plot: refl 2011-09-08 15:17:50,496 DEBUG quick_mplplots found 7.841704 days of data 2011-09-08 15:17:50,496 DEBUG quick_mplplots start day is 242.000000 2011-09-08 15:17:50,497 DEBUG quick_mplplots figures with 2.000000 days per page 2011-09-08 15:17:50,497 DEBUG quick_mplplots printing 5 pages 2011-09-08 15:17:50,497 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-09-08 15:17:50,497 INFO quick_mplplots startdd is 242.0 2011-09-08 15:17:50,498 INFO quick_mplplots dt is 2.0 2011-09-08 15:17:55,728 DEBUG quick_mpl Ending plot: refl 2011-09-08 15:17:55,729 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2011-09-08 15:17:55,729 DEBUG quick_setup edit/lst_temp.tmp exists 2011-09-08 15:17:55,730 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:55,730 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/edit 2011-09-08 15:17:55,730 DEBUG quick_setup running python command "lst_temp" 2011-09-08 15:17:55,731 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at.tem step_size= 1 year_base= 2011 time_ranges: all 2011-09-08 15:17:55,731 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2011-09-08 15:17:55,798 DEBUG quick_mpl Starting plot: temp 2011-09-08 15:17:55,870 DEBUG quick_mplplots plotting 2283 points 2011-09-08 15:17:56,571 DEBUG quick_mpl Ending plot: temp 2011-09-08 15:17:56,571 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2011-09-08 15:17:56,572 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2011-09-08 15:17:56,572 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:56,572 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/cal/botmtrk 2011-09-08 15:17:56,572 DEBUG quick_setup running python command "lst_btrk" 2011-09-08 15:17:56,573 DEBUG quick_subs dbname: ../../adcpdb/a_at output: a_at.btm step_size= 1 year_base= 2011 time_ranges: 2011/08/31 16:16:14 to 2011/09/08 15:14:24 /* whole time range */ 2011-09-08 15:17:56,573 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2011-09-08 15:17:56,598 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2011-09-08 15:17:56,598 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:56,599 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/cal/botmtrk 2011-09-08 15:17:56,599 DEBUG quick_setup running python command "refabsbt" 2011-09-08 15:17:56,600 DEBUG quick_subs fix_file_type: simple reference_file: a_at.btm fix_file: ../../nav/a_at.gps output: a_at.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2011-09-08 15:17:56,600 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2011-09-08 15:17:56,617 DEBUG quick_mpl Starting plot: btcal 2011-09-08 15:17:57,827 DEBUG quick_mpl Ending plot: btcal 2011-09-08 15:17:57,828 DEBUG quick_setup nav/as_nav.tmp exists 2011-09-08 15:17:57,828 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:57,829 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/nav 2011-09-08 15:17:57,829 DEBUG quick_setup running python command "as_nav" 2011-09-08 15:17:57,829 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/08/31 16:16:14 to 2011/09/08 15:14:24 /* the whole time range */ 2011-09-08 15:17:57,830 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-09-08 15:17:57,920 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2011-09-08 15:17:57,921 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:17:57,921 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/cal/watertrk 2011-09-08 15:17:57,922 DEBUG quick_setup running python command "timslip" 2011-09-08 15:17:57,922 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_at.gps reference_file: ../../nav/a_at.nav output_file: a_at_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2011-09-08 15:17:57,923 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2011-09-08 15:17:57,953 DEBUG quick_mpl Starting plot: wtcal 2011-09-08 15:17:57,957 DEBUG quick_mplplots Found 5 calibration points 2011-09-08 15:18:00,658 DEBUG quick_mpl Ending plot: wtcal 2011-09-08 15:18:00,659 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2011-09-08 15:18:00,659 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:18:00,659 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/vector 2011-09-08 15:18:00,659 DEBUG quick_setup running python command "timegrid" 2011-09-08 15:18:00,660 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2011-09-08 15:18:00,671 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:18:00,671 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/vector 2011-09-08 15:18:00,672 DEBUG quick_setup running python command "as_vect" 2011-09-08 15:18:00,672 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2011-09-08 15:18:00,803 DEBUG quick_asect done making vector matfiles 2011-09-08 15:18:00,803 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:18:00,804 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/contour 2011-09-08 15:18:00,804 DEBUG quick_setup running python command "timegrid" 2011-09-08 15:18:00,805 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2011-09-08 15:18:00,818 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:18:00,818 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/contour 2011-09-08 15:18:00,819 DEBUG quick_setup running python command "as_cont" 2011-09-08 15:18:00,819 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2011-09-08 15:18:00,997 DEBUG quick_setup starting in /home/data/at1810/proc/os75nb 2011-09-08 15:18:00,998 DEBUG quick_setup executing commands from /home/data/at1810/proc/os75nb/contour 2011-09-08 15:18:00,998 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_at 2011-09-08 15:18:01,400 DEBUG quick_asect done running getmat with "allbins" 2011-09-08 15:18:01,461 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2011-09-08 15:18:01,462 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2011-09-08 15:18:01,462 DEBUG root matfile is contour/contour_uv.mat 2011-09-08 15:18:01,470 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2011-09-08 15:18:01,470 DEBUG root matfile is vector/vector_uv.mat 2011-09-08 15:18:01,471 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2011-09-08 15:18:01,472 DEBUG root matfile is contour/contour_xy.mat 2011-09-08 15:18:01,472 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2011-09-08 15:18:01,473 DEBUG root matfile is vector/vector_xy.mat 2011-09-08 15:18:01,473 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2011-09-08 15:18:01,474 DEBUG root about to copy file edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2011-09-08 15:18:01,475 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2011-09-08 15:18:01,475 INFO root Ending quick_adcp.py 2011-09-08 15:18:01,583 DEBUG quick_setup killed matlab engine