2011-07-14 11:03:19,167 DEBUG root about to write control file parameters to --yearbase 2011 --pingtype nb --cfgbase at18_07 --cruisename at18_07 --instclass os --instname os75 --dbname a_at --datatype uhdas --datadir /home/data/at18_07/raw/os75 --cfgpath /home/data/at18_07/proc/os75nb/config --ens_len 300 --ping_headcor --hcorr_inst phins --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 2 --quiet --auto --npycalc all --mplplots all 2011-07-14 11:03:19,168 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2011-07-14 11:03:19,176 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2011-07-14 11:03:19,177 DEBUG quick_adcp progdir = /home/currents/programs 2011-07-14 11:03:19,177 DEBUG quick_adcp binos = lnx 2011-07-14 11:03:19,177 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2011-07-14 11:03:19,178 DEBUG quick_setup yearbase is 2011, proc_yearbase is 2011 2011-07-14 11:03:19,178 DEBUG quick_setup numpy calculations to run: refsm 2011-07-14 11:03:19,182 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2011-07-14 11:03:19,183 DEBUG quick_setup processing data logged with uhdas: 2011-07-14 11:03:19,183 DEBUG quick_setup datatype is uhdas 2011-07-14 11:03:19,183 DEBUG quick_setup pingtype is nb 2011-07-14 11:03:19,183 DEBUG quick_setup instclass is os 2011-07-14 11:03:19,184 DEBUG quick_setup no post-processing heading correction will be used 2011-07-14 11:03:19,184 DEBUG quick_setup transducer depth set in *_cfg.m file 2011-07-14 11:03:19,247 DEBUG quick_setup found (in edit/asetup.m): 2011-07-14 11:03:19,247 DEBUG quick_setup config.beamangle is 30 2011-07-14 11:03:19,247 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'at18_07',... 'cfgpath' , '/home/data/at18_07/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2011-07-14 11:03:19,247 DEBUG quick_setup ------- starting Matlab engine ------- 2011-07-14 11:03:19,248 DEBUG quick_setup ['/home/currents/programs/matlab'] 2011-07-14 11:03:19,258 DEBUG call_matlab starting to wait for initial prompt 2011-07-14 11:03:21,143 DEBUG call_matlab received initial prompt 2011-07-14 11:03:21,659 DEBUG quick_adcp cwd is /home/data/at18_07/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-07-14 11:03:21,660 DEBUG quick_adcp original fix file is a_at.gps 2011-07-14 11:03:21,660 DEBUG quick_adcp smoothed nav file is a_at_refsm.asc 2011-07-14 11:03:21,660 DEBUG quick_asect extracting matlab files for os75, nb pings 2011-07-14 11:03:21,714 DEBUG quick_subs found 181 files using wildcard expansion from "/home/data/at18_07/raw/os75/*.raw" 2011-07-14 11:03:21,714 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/at18_07/raw/os75/at2011_179_51971.raw /home/data/at18_07/raw/os75/at2011_179_57600.raw /home/data/at18_07/raw/os75/at2011_179_64800.raw /home/data/at18_07/raw/os75/at2011_179_68195.raw /home/data/at18_07/raw/os75/at2011_179_72000.raw /home/data/at18_07/raw/os75/at2011_179_79200.raw /home/data/at18_07/raw/os75/at2011_180_00000.raw /home/data/at18_07/raw/os75/at2011_180_07200.raw /home/data/at18_07/raw/os75/at2011_180_14400.raw /home/data/at18_07/raw/os75/at2011_180_21600.raw /home/data/at18_07/raw/os75/at2011_180_28800.raw /home/data/at18_07/raw/os75/at2011_180_36000.raw /home/data/at18_07/raw/os75/at2011_180_43200.raw /home/data/at18_07/raw/os75/at2011_180_50400.raw /home/data/at18_07/raw/os75/at2011_180_57600.raw /home/data/at18_07/raw/os75/at2011_180_64800.raw /home/data/at18_07/raw/os75/at2011_180_72000.raw /home/data/at18_07/raw/os75/at2011_180_79200.raw /home/data/at18_07/raw/os75/at2011_181_00000.raw /home/data/at18_07/raw/os75/at2011_181_07200.raw /home/data/at18_07/raw/os75/at2011_181_14400.raw /home/data/at18_07/raw/os75/at2011_181_21600.raw /home/data/at18_07/raw/os75/at2011_181_28800.raw /home/data/at18_07/raw/os75/at2011_181_36000.raw /home/data/at18_07/raw/os75/at2011_181_43200.raw /home/data/at18_07/raw/os75/at2011_181_50400.raw /home/data/at18_07/raw/os75/at2011_181_57600.raw /home/data/at18_07/raw/os75/at2011_181_64800.raw /home/data/at18_07/raw/os75/at2011_181_72000.raw /home/data/at18_07/raw/os75/at2011_181_79200.raw /home/data/at18_07/raw/os75/at2011_182_00000.raw /home/data/at18_07/raw/os75/at2011_182_07200.raw /home/data/at18_07/raw/os75/at2011_182_14400.raw /home/data/at18_07/raw/os75/at2011_182_21600.raw /home/data/at18_07/raw/os75/at2011_182_28800.raw /home/data/at18_07/raw/os75/at2011_182_36000.raw /home/data/at18_07/raw/os75/at2011_182_43200.raw /home/data/at18_07/raw/os75/at2011_182_50400.raw /home/data/at18_07/raw/os75/at2011_182_57600.raw /home/data/at18_07/raw/os75/at2011_182_64800.raw /home/data/at18_07/raw/os75/at2011_182_72000.raw /home/data/at18_07/raw/os75/at2011_182_79200.raw /home/data/at18_07/raw/os75/at2011_183_00000.raw /home/data/at18_07/raw/os75/at2011_183_07200.raw /home/data/at18_07/raw/os75/at2011_183_14400.raw /home/data/at18_07/raw/os75/at2011_183_21600.raw /home/data/at18_07/raw/os75/at2011_183_28800.raw /home/data/at18_07/raw/os75/at2011_183_36000.raw /home/data/at18_07/raw/os75/at2011_183_43200.raw /home/data/at18_07/raw/os75/at2011_183_50400.raw /home/data/at18_07/raw/os75/at2011_183_57600.raw /home/data/at18_07/raw/os75/at2011_183_64800.raw /home/data/at18_07/raw/os75/at2011_183_72000.raw /home/data/at18_07/raw/os75/at2011_183_79200.raw /home/data/at18_07/raw/os75/at2011_184_00000.raw /home/data/at18_07/raw/os75/at2011_184_07200.raw /home/data/at18_07/raw/os75/at2011_184_14400.raw /home/data/at18_07/raw/os75/at2011_184_21600.raw /home/data/at18_07/raw/os75/at2011_184_28800.raw /home/data/at18_07/raw/os75/at2011_184_36000.raw /home/data/at18_07/raw/os75/at2011_184_43200.raw /home/data/at18_07/raw/os75/at2011_184_50400.raw /home/data/at18_07/raw/os75/at2011_184_57600.raw /home/data/at18_07/raw/os75/at2011_184_64800.raw /home/data/at18_07/raw/os75/at2011_184_72000.raw /home/data/at18_07/raw/os75/at2011_184_79200.raw /home/data/at18_07/raw/os75/at2011_185_00000.raw /home/data/at18_07/raw/os75/at2011_185_07200.raw /home/data/at18_07/raw/os75/at2011_185_14400.raw /home/data/at18_07/raw/os75/at2011_185_21600.raw /home/data/at18_07/raw/os75/at2011_185_28800.raw /home/data/at18_07/raw/os75/at2011_185_36000.raw /home/data/at18_07/raw/os75/at2011_185_43200.raw /home/data/at18_07/raw/os75/at2011_185_50400.raw /home/data/at18_07/raw/os75/at2011_185_57600.raw /home/data/at18_07/raw/os75/at2011_185_64800.raw /home/data/at18_07/raw/os75/at2011_185_72000.raw /home/data/at18_07/raw/os75/at2011_185_79200.raw /home/data/at18_07/raw/os75/at2011_186_00000.raw /home/data/at18_07/raw/os75/at2011_186_07200.raw /home/data/at18_07/raw/os75/at2011_186_14400.raw /home/data/at18_07/raw/os75/at2011_186_21600.raw /home/data/at18_07/raw/os75/at2011_186_28800.raw /home/data/at18_07/raw/os75/at2011_186_36000.raw /home/data/at18_07/raw/os75/at2011_186_43200.raw /home/data/at18_07/raw/os75/at2011_186_50400.raw /home/data/at18_07/raw/os75/at2011_186_57600.raw /home/data/at18_07/raw/os75/at2011_186_64800.raw /home/data/at18_07/raw/os75/at2011_186_72000.raw /home/data/at18_07/raw/os75/at2011_186_79200.raw /home/data/at18_07/raw/os75/at2011_187_00000.raw /home/data/at18_07/raw/os75/at2011_187_07200.raw /home/data/at18_07/raw/os75/at2011_187_14400.raw /home/data/at18_07/raw/os75/at2011_187_21600.raw /home/data/at18_07/raw/os75/at2011_187_28800.raw /home/data/at18_07/raw/os75/at2011_187_36000.raw /home/data/at18_07/raw/os75/at2011_187_43200.raw /home/data/at18_07/raw/os75/at2011_187_50400.raw /home/data/at18_07/raw/os75/at2011_187_57600.raw /home/data/at18_07/raw/os75/at2011_187_64800.raw /home/data/at18_07/raw/os75/at2011_187_72000.raw /home/data/at18_07/raw/os75/at2011_187_79200.raw /home/data/at18_07/raw/os75/at2011_188_00000.raw /home/data/at18_07/raw/os75/at2011_188_07200.raw /home/data/at18_07/raw/os75/at2011_188_14400.raw /home/data/at18_07/raw/os75/at2011_188_21600.raw /home/data/at18_07/raw/os75/at2011_188_28800.raw /home/data/at18_07/raw/os75/at2011_188_36000.raw /home/data/at18_07/raw/os75/at2011_188_43200.raw /home/data/at18_07/raw/os75/at2011_188_50400.raw /home/data/at18_07/raw/os75/at2011_188_57600.raw /home/data/at18_07/raw/os75/at2011_188_64800.raw /home/data/at18_07/raw/os75/at2011_188_72000.raw /home/data/at18_07/raw/os75/at2011_188_79200.raw /home/data/at18_07/raw/os75/at2011_189_00000.raw /home/data/at18_07/raw/os75/at2011_189_07200.raw /home/data/at18_07/raw/os75/at2011_189_14400.raw /home/data/at18_07/raw/os75/at2011_189_21600.raw /home/data/at18_07/raw/os75/at2011_189_28800.raw /home/data/at18_07/raw/os75/at2011_189_36000.raw /home/data/at18_07/raw/os75/at2011_189_43200.raw /home/data/at18_07/raw/os75/at2011_189_50400.raw /home/data/at18_07/raw/os75/at2011_189_57600.raw /home/data/at18_07/raw/os75/at2011_189_64800.raw /home/data/at18_07/raw/os75/at2011_189_72000.raw /home/data/at18_07/raw/os75/at2011_189_79200.raw /home/data/at18_07/raw/os75/at2011_190_00000.raw /home/data/at18_07/raw/os75/at2011_190_07200.raw /home/data/at18_07/raw/os75/at2011_190_14400.raw /home/data/at18_07/raw/os75/at2011_190_21600.raw /home/data/at18_07/raw/os75/at2011_190_28800.raw /home/data/at18_07/raw/os75/at2011_190_36000.raw /home/data/at18_07/raw/os75/at2011_190_43200.raw /home/data/at18_07/raw/os75/at2011_190_50400.raw /home/data/at18_07/raw/os75/at2011_190_57600.raw /home/data/at18_07/raw/os75/at2011_190_64800.raw /home/data/at18_07/raw/os75/at2011_190_72000.raw /home/data/at18_07/raw/os75/at2011_190_79200.raw /home/data/at18_07/raw/os75/at2011_191_00000.raw /home/data/at18_07/raw/os75/at2011_191_07200.raw /home/data/at18_07/raw/os75/at2011_191_14400.raw /home/data/at18_07/raw/os75/at2011_191_21600.raw /home/data/at18_07/raw/os75/at2011_191_28800.raw /home/data/at18_07/raw/os75/at2011_191_36000.raw /home/data/at18_07/raw/os75/at2011_191_43200.raw /home/data/at18_07/raw/os75/at2011_191_50400.raw /home/data/at18_07/raw/os75/at2011_191_57600.raw /home/data/at18_07/raw/os75/at2011_191_64800.raw /home/data/at18_07/raw/os75/at2011_191_72000.raw /home/data/at18_07/raw/os75/at2011_191_79200.raw /home/data/at18_07/raw/os75/at2011_192_00000.raw /home/data/at18_07/raw/os75/at2011_192_07200.raw /home/data/at18_07/raw/os75/at2011_192_14400.raw /home/data/at18_07/raw/os75/at2011_192_21600.raw /home/data/at18_07/raw/os75/at2011_192_28800.raw /home/data/at18_07/raw/os75/at2011_192_36000.raw /home/data/at18_07/raw/os75/at2011_192_43200.raw /home/data/at18_07/raw/os75/at2011_192_50400.raw /home/data/at18_07/raw/os75/at2011_192_57600.raw /home/data/at18_07/raw/os75/at2011_192_64800.raw /home/data/at18_07/raw/os75/at2011_192_72000.raw /home/data/at18_07/raw/os75/at2011_192_79200.raw /home/data/at18_07/raw/os75/at2011_193_00000.raw /home/data/at18_07/raw/os75/at2011_193_07200.raw /home/data/at18_07/raw/os75/at2011_193_14400.raw /home/data/at18_07/raw/os75/at2011_193_21600.raw /home/data/at18_07/raw/os75/at2011_193_28800.raw /home/data/at18_07/raw/os75/at2011_193_36000.raw /home/data/at18_07/raw/os75/at2011_193_43200.raw /home/data/at18_07/raw/os75/at2011_193_50400.raw /home/data/at18_07/raw/os75/at2011_193_57600.raw /home/data/at18_07/raw/os75/at2011_193_64800.raw /home/data/at18_07/raw/os75/at2011_193_72000.raw /home/data/at18_07/raw/os75/at2011_193_79200.raw /home/data/at18_07/raw/os75/at2011_194_00000.raw /home/data/at18_07/raw/os75/at2011_194_07200.raw /home/data/at18_07/raw/os75/at2011_194_14400.raw /home/data/at18_07/raw/os75/at2011_194_21600.raw /home/data/at18_07/raw/os75/at2011_194_28800.raw /home/data/at18_07/raw/os75/at2011_194_32595.raw /home/data/at18_07/raw/os75/at2011_194_36000.raw 2011-07-14 11:03:21,715 DEBUG quick_adcp LASTFILES invoked. using only 181 files from end of filelist 2011-07-14 11:03:21,715 DEBUG quick_adcp using delblks = 1 2011-07-14 11:03:21,716 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/at18_07/raw/os75/at2011_179_51971.raw /home/data/at18_07/raw/os75/at2011_179_57600.raw /home/data/at18_07/raw/os75/at2011_179_64800.raw /home/data/at18_07/raw/os75/at2011_179_68195.raw /home/data/at18_07/raw/os75/at2011_179_72000.raw /home/data/at18_07/raw/os75/at2011_179_79200.raw /home/data/at18_07/raw/os75/at2011_180_00000.raw /home/data/at18_07/raw/os75/at2011_180_07200.raw /home/data/at18_07/raw/os75/at2011_180_14400.raw /home/data/at18_07/raw/os75/at2011_180_21600.raw /home/data/at18_07/raw/os75/at2011_180_28800.raw /home/data/at18_07/raw/os75/at2011_180_36000.raw /home/data/at18_07/raw/os75/at2011_180_43200.raw /home/data/at18_07/raw/os75/at2011_180_50400.raw /home/data/at18_07/raw/os75/at2011_180_57600.raw /home/data/at18_07/raw/os75/at2011_180_64800.raw /home/data/at18_07/raw/os75/at2011_180_72000.raw /home/data/at18_07/raw/os75/at2011_180_79200.raw /home/data/at18_07/raw/os75/at2011_181_00000.raw /home/data/at18_07/raw/os75/at2011_181_07200.raw /home/data/at18_07/raw/os75/at2011_181_14400.raw /home/data/at18_07/raw/os75/at2011_181_21600.raw /home/data/at18_07/raw/os75/at2011_181_28800.raw /home/data/at18_07/raw/os75/at2011_181_36000.raw /home/data/at18_07/raw/os75/at2011_181_43200.raw /home/data/at18_07/raw/os75/at2011_181_50400.raw /home/data/at18_07/raw/os75/at2011_181_57600.raw /home/data/at18_07/raw/os75/at2011_181_64800.raw /home/data/at18_07/raw/os75/at2011_181_72000.raw /home/data/at18_07/raw/os75/at2011_181_79200.raw /home/data/at18_07/raw/os75/at2011_182_00000.raw /home/data/at18_07/raw/os75/at2011_182_07200.raw /home/data/at18_07/raw/os75/at2011_182_14400.raw /home/data/at18_07/raw/os75/at2011_182_21600.raw /home/data/at18_07/raw/os75/at2011_182_28800.raw /home/data/at18_07/raw/os75/at2011_182_36000.raw /home/data/at18_07/raw/os75/at2011_182_43200.raw /home/data/at18_07/raw/os75/at2011_182_50400.raw /home/data/at18_07/raw/os75/at2011_182_57600.raw /home/data/at18_07/raw/os75/at2011_182_64800.raw /home/data/at18_07/raw/os75/at2011_182_72000.raw /home/data/at18_07/raw/os75/at2011_182_79200.raw /home/data/at18_07/raw/os75/at2011_183_00000.raw /home/data/at18_07/raw/os75/at2011_183_07200.raw /home/data/at18_07/raw/os75/at2011_183_14400.raw /home/data/at18_07/raw/os75/at2011_183_21600.raw /home/data/at18_07/raw/os75/at2011_183_28800.raw /home/data/at18_07/raw/os75/at2011_183_36000.raw /home/data/at18_07/raw/os75/at2011_183_43200.raw /home/data/at18_07/raw/os75/at2011_183_50400.raw /home/data/at18_07/raw/os75/at2011_183_57600.raw 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/home/data/at18_07/raw/os75/at2011_193_64800.raw /home/data/at18_07/raw/os75/at2011_193_72000.raw /home/data/at18_07/raw/os75/at2011_193_79200.raw /home/data/at18_07/raw/os75/at2011_194_00000.raw /home/data/at18_07/raw/os75/at2011_194_07200.raw /home/data/at18_07/raw/os75/at2011_194_14400.raw /home/data/at18_07/raw/os75/at2011_194_21600.raw /home/data/at18_07/raw/os75/at2011_194_28800.raw /home/data/at18_07/raw/os75/at2011_194_32595.raw /home/data/at18_07/raw/os75/at2011_194_36000.raw 2011-07-14 11:03:21,719 DEBUG quick_adcp Thu Jul 14 11:03:21 2011 running quick_adcp.py as follows: --cntfile /home/data/at18_07/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_at cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 44 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_at allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase at18_07 cfgpath /home/data/at18_07/proc/os75nb/config cntfile /home/data/at18_07/proc/os75nb/os75nb_qpy.cnt commands None cruisename at18_07 data_def vmadcp.def datadir /home/data/at18_07/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/at18_07/raw/os75/at2011_179_51971.raw', 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'/home/data/at18_07/raw/os75/at2011_193_72000.raw', '/home/data/at18_07/raw/os75/at2011_193_79200.raw', '/home/data/at18_07/raw/os75/at2011_194_00000.raw', '/home/data/at18_07/raw/os75/at2011_194_07200.raw', '/home/data/at18_07/raw/os75/at2011_194_14400.raw', '/home/data/at18_07/raw/os75/at2011_194_21600.raw', '/home/data/at18_07/raw/os75/at2011_194_28800.raw', '/home/data/at18_07/raw/os75/at2011_194_32595.raw', '/home/data/at18_07/raw/os75/at2011_194_36000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 44 fixfile a_at.gps hcorr_inst phins head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'at18_07',... 'cfgpath' , '/home/data/at18_07/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_at.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2011 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/at18_07/raw/os75/at2011_179_51971.raw', '/home/data/at18_07/raw/os75/at2011_179_57600.raw', '/home/data/at18_07/raw/os75/at2011_179_64800.raw', '/home/data/at18_07/raw/os75/at2011_179_68195.raw', '/home/data/at18_07/raw/os75/at2011_179_72000.raw', '/home/data/at18_07/raw/os75/at2011_179_79200.raw', 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'/home/data/at18_07/raw/os75/at2011_194_21600.raw', '/home/data/at18_07/raw/os75/at2011_194_28800.raw', '/home/data/at18_07/raw/os75/at2011_194_32595.raw', '/home/data/at18_07/raw/os75/at2011_194_36000.raw'] setup_info False skip_avg True smfile a_at_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 2 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2011 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-07-14 11:03:21,720 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2011-07-14 11:03:21,721 DEBUG quick_run scanning files for time ranges... 2011-07-14 11:03:21,721 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb/scan 2011-07-14 11:03:21,721 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/scan 2011-07-14 11:03:21,722 DEBUG quick_setup running python command "scanraw" 2011-07-14 11:03:21,722 DEBUG call_matlab --> clear all 2011-07-14 11:03:21,732 DEBUG call_matlab <-- >> 2011-07-14 11:03:21,733 DEBUG call_matlab --> close all 2011-07-14 11:03:21,769 DEBUG call_matlab <-- >> 2011-07-14 11:03:21,769 DEBUG call_matlab --> cd /home/data/at18_07/proc/os75nb/scan 2011-07-14 11:03:21,772 DEBUG call_matlab <-- >> 2011-07-14 11:03:21,773 DEBUG call_matlab --> scan_tmp 2011-07-14 11:03:23,198 DEBUG call_matlab <-- getting config files from "/home/data/at18_07/proc/os75nb/config" running "at18_07_cfg.m" running "at18_07_proc.m" writing scan info to a_at.scn >> 2011-07-14 11:03:23,199 DEBUG quick_run writing time range from a_at.scn to a_at.tr 2011-07-14 11:03:23,199 DEBUG quick_run getting scan time range 2011-07-14 11:03:23,200 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,200 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/scan 2011-07-14 11:03:23,200 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,200 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,202 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,204 DEBUG quick_subs start_end_time 2011/06/29 14:26:17 to 2011/07/14 10:59:52 2011-07-14 11:03:23,204 DEBUG quick_subs dd0: 179.601586 dd1: 194.458241 2011-07-14 11:03:23,205 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,205 DEBUG quick_adcp looking for database with adcpdb/a_at*.blk 2011-07-14 11:03:23,207 DEBUG quick_adcp database found: listing blocks 2011-07-14 11:03:23,207 DEBUG quick_subs removing a_atdir.blk 2011-07-14 11:03:23,208 DEBUG quick_subs about to run mkblkdir 2011-07-14 11:03:23,208 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-07-14 11:03:23,209 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-07-14 11:03:23,276 DEBUG quick_subs database passes. 2011-07-14 11:03:23,277 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-07-14 11:03:23,277 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,277 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,278 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,278 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,279 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,280 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 10:29:19 2011-07-14 11:03:23,280 DEBUG quick_subs dd0: 179.605127 dd1: 194.437025 2011-07-14 11:03:23,280 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-07-14 11:03:23,281 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,281 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,281 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,281 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,282 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,283 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 10:29:19 2011-07-14 11:03:23,283 DEBUG quick_subs dd0: 179.605127 dd1: 194.437025 2011-07-14 11:03:23,284 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2011-07-14 11:03:23,284 DEBUG quick_adcp origdb_time_range is 2011/06/29 14:31:23 to 2011/07/14 10:29:19 2011-07-14 11:03:23,284 DEBUG quick_adcp (179.605127 to 194.437025) 2011-07-14 11:03:23,285 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2011-07-14 11:03:23,286 DEBUG quick_subs getting current (remaining after deletion) database times 2011-07-14 11:03:23,286 DEBUG quick_subs ['adcpdb/a_at015.blk', 'adcpdb/a_at029.blk', 'adcpdb/a_at005.blk', 'adcpdb/a_at024.blk', 'adcpdb/a_at004.blk', 'adcpdb/a_at010.blk', 'adcpdb/a_at025.blk', 'adcpdb/a_at009.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at012.blk', 'adcpdb/a_at017.blk', 'adcpdb/a_atdir.blk', 'adcpdb/a_at018.blk', 'adcpdb/a_at011.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at026.blk', 'adcpdb/a_at020.blk', 'adcpdb/a_at028.blk', 'adcpdb/a_at007.blk', 'adcpdb/a_at031.blk', 'adcpdb/a_at019.blk', 'adcpdb/a_at014.blk', 'adcpdb/a_at023.blk', 'adcpdb/a_at008.blk', 'adcpdb/a_at016.blk', 'adcpdb/a_at022.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at021.blk', 'adcpdb/a_at030.blk', 'adcpdb/a_at027.blk', 'adcpdb/a_at006.blk', 'adcpdb/a_at013.blk'] 2011-07-14 11:03:23,286 DEBUG quick_subs length is 32 2011-07-14 11:03:23,287 DEBUG quick_subs removing a_atdir.blk 2011-07-14 11:03:23,287 DEBUG quick_subs about to run mkblkdir 2011-07-14 11:03:23,288 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-07-14 11:03:23,288 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-07-14 11:03:23,312 DEBUG quick_subs database passes. 2011-07-14 11:03:23,312 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-07-14 11:03:23,313 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,313 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,313 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,313 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,315 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,315 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 10:29:19 2011-07-14 11:03:23,315 DEBUG quick_subs dd0: 179.605127 dd1: 194.437025 2011-07-14 11:03:23,316 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,316 DEBUG quick_subs reading time range 2011-07-14 11:03:23,317 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 10:29:19 2011-07-14 11:03:23,317 DEBUG quick_subs dd0: 179.605127 dd1: 194.437025 2011-07-14 11:03:23,318 INFO quick_subs Thu Jul 14 11:03:23 2011 2011-07-14 11:03:23,318 INFO quick_subs checking database time range by listblk 2011-07-14 11:03:23,319 DEBUG quick_subs removing a_atdir.blk 2011-07-14 11:03:23,319 DEBUG quick_subs about to run mkblkdir 2011-07-14 11:03:23,319 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-07-14 11:03:23,320 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-07-14 11:03:23,340 DEBUG quick_subs database passes. 2011-07-14 11:03:23,341 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-07-14 11:03:23,341 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,341 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,341 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,342 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,347 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,348 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 10:29:19 2011-07-14 11:03:23,348 DEBUG quick_subs dd0: 179.605127 dd1: 194.437025 2011-07-14 11:03:23,355 INFO quick_subs found line /* 0 n= 53 a_at001.blk */ 2011/06/29 14:31:23 to 2011/06/29 18:54:15 2011-07-14 11:03:23,355 INFO quick_subs found line /* 1 n= 146 a_at002.blk */ 2011/06/29 19:01:38 to 2011/06/30 07:09:10 2011-07-14 11:03:23,356 INFO quick_subs found line /* 2 n= 146 a_at003.blk */ 2011/06/30 07:14:11 to 2011/06/30 19:21:34 2011-07-14 11:03:23,356 INFO quick_subs found line /* 3 n= 146 a_at004.blk */ 2011/06/30 19:26:35 to 2011/07/01 07:33:52 2011-07-14 11:03:23,356 INFO quick_subs found line /* 4 n= 146 a_at005.blk */ 2011/07/01 07:38:53 to 2011/07/01 19:46:09 2011-07-14 11:03:23,356 INFO quick_subs found line /* 5 n= 146 a_at006.blk */ 2011/07/01 19:51:10 to 2011/07/02 07:58:28 2011-07-14 11:03:23,357 INFO quick_subs found line /* 6 n= 146 a_at007.blk */ 2011/07/02 08:03:29 to 2011/07/02 20:10:48 2011-07-14 11:03:23,357 INFO quick_subs found line /* 7 n= 146 a_at008.blk */ 2011/07/02 20:15:49 to 2011/07/03 08:23:08 2011-07-14 11:03:23,357 INFO quick_subs found line /* 8 n= 146 a_at009.blk */ 2011/07/03 08:28:09 to 2011/07/03 20:35:29 2011-07-14 11:03:23,358 INFO quick_subs found line /* 9 n= 146 a_at010.blk */ 2011/07/03 20:40:30 to 2011/07/04 08:47:50 2011-07-14 11:03:23,358 INFO quick_subs found line /* 10 n= 146 a_at011.blk */ 2011/07/04 08:52:51 to 2011/07/04 21:00:12 2011-07-14 11:03:23,358 INFO quick_subs found line /* 11 n= 146 a_at012.blk */ 2011/07/04 21:05:13 to 2011/07/05 09:12:32 2011-07-14 11:03:23,359 INFO quick_subs found line /* 12 n= 146 a_at013.blk */ 2011/07/05 09:17:33 to 2011/07/05 21:24:50 2011-07-14 11:03:23,359 INFO quick_subs found line /* 13 n= 146 a_at014.blk */ 2011/07/05 21:29:51 to 2011/07/06 09:42:11 2011-07-14 11:03:23,359 INFO quick_subs found line /* 14 n= 146 a_at015.blk */ 2011/07/06 09:47:12 to 2011/07/06 21:54:36 2011-07-14 11:03:23,360 INFO quick_subs found line /* 15 n= 146 a_at016.blk */ 2011/07/06 21:59:37 to 2011/07/07 10:06:57 2011-07-14 11:03:23,360 INFO quick_subs found line /* 16 n= 146 a_at017.blk */ 2011/07/07 10:11:58 to 2011/07/07 22:19:01 2011-07-14 11:03:23,360 INFO quick_subs found line /* 17 n= 146 a_at018.blk */ 2011/07/07 22:24:02 to 2011/07/08 10:31:14 2011-07-14 11:03:23,360 INFO quick_subs found line /* 18 n= 146 a_at019.blk */ 2011/07/08 10:36:15 to 2011/07/08 22:43:34 2011-07-14 11:03:23,361 INFO quick_subs found line /* 19 n= 146 a_at020.blk */ 2011/07/08 22:48:35 to 2011/07/09 11:00:52 2011-07-14 11:03:23,361 INFO quick_subs found line /* 20 n= 146 a_at021.blk */ 2011/07/09 11:05:53 to 2011/07/09 23:13:12 2011-07-14 11:03:23,361 INFO quick_subs found line /* 21 n= 146 a_at022.blk */ 2011/07/09 23:18:13 to 2011/07/10 11:25:30 2011-07-14 11:03:23,361 INFO quick_subs found line /* 22 n= 146 a_at023.blk */ 2011/07/10 11:30:31 to 2011/07/10 23:37:49 2011-07-14 11:03:23,362 INFO quick_subs found line /* 23 n= 146 a_at024.blk */ 2011/07/10 23:42:50 to 2011/07/11 11:50:08 2011-07-14 11:03:23,362 INFO quick_subs found line /* 24 n= 146 a_at025.blk */ 2011/07/11 11:55:09 to 2011/07/12 00:02:26 2011-07-14 11:03:23,362 INFO quick_subs found line /* 25 n= 146 a_at026.blk */ 2011/07/12 00:07:27 to 2011/07/12 12:14:44 2011-07-14 11:03:23,363 INFO quick_subs found line /* 26 n= 146 a_at027.blk */ 2011/07/12 12:19:45 to 2011/07/13 00:27:03 2011-07-14 11:03:23,363 INFO quick_subs found line /* 27 n= 146 a_at028.blk */ 2011/07/13 00:32:04 to 2011/07/13 12:39:16 2011-07-14 11:03:23,363 INFO quick_subs found line /* 28 n= 146 a_at029.blk */ 2011/07/13 12:44:17 to 2011/07/14 00:56:27 2011-07-14 11:03:23,363 INFO quick_subs found line /* 29 n= 96 a_at030.blk */ 2011/07/14 01:01:28 to 2011/07/14 08:57:53 2011-07-14 11:03:23,364 INFO quick_subs found line /* 30 n= 17 a_at031.blk */ 2011/07/14 09:08:19 to 2011/07/14 10:29:19 2011-07-14 11:03:23,364 INFO quick_subs scan data start at 179.6015856 2011-07-14 11:03:23,364 INFO quick_subs scan time range: 2011/06/29 14:26:17 to 2011/07/14 10:59:52 2011-07-14 11:03:23,365 INFO quick_subs codasdb ends at 194.4370255 (2011/07/14 10:29:19) 2011-07-14 11:03:23,365 DEBUG quick_subs ... changed dirs, in /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,366 DEBUG quick_subs deleting these files: ['a_at031.blk'] 2011-07-14 11:03:23,367 DEBUG quick_subs getting current (remaining after deletion) database times 2011-07-14 11:03:23,367 DEBUG quick_subs ['adcpdb/a_at015.blk', 'adcpdb/a_at029.blk', 'adcpdb/a_at005.blk', 'adcpdb/a_at024.blk', 'adcpdb/a_at004.blk', 'adcpdb/a_at010.blk', 'adcpdb/a_at025.blk', 'adcpdb/a_at009.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at012.blk', 'adcpdb/a_at017.blk', 'adcpdb/a_at018.blk', 'adcpdb/a_at011.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at026.blk', 'adcpdb/a_at020.blk', 'adcpdb/a_at028.blk', 'adcpdb/a_at007.blk', 'adcpdb/a_at019.blk', 'adcpdb/a_at014.blk', 'adcpdb/a_at023.blk', 'adcpdb/a_at008.blk', 'adcpdb/a_at016.blk', 'adcpdb/a_at022.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at021.blk', 'adcpdb/a_at030.blk', 'adcpdb/a_at027.blk', 'adcpdb/a_at006.blk', 'adcpdb/a_at013.blk'] 2011-07-14 11:03:23,367 DEBUG quick_subs length is 30 2011-07-14 11:03:23,368 DEBUG quick_subs about to run mkblkdir 2011-07-14 11:03:23,368 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-07-14 11:03:23,369 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-07-14 11:03:23,388 DEBUG quick_subs database passes. 2011-07-14 11:03:23,389 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-07-14 11:03:23,389 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,389 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,389 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,390 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,391 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,392 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 08:57:53 2011-07-14 11:03:23,392 DEBUG quick_subs dd0: 179.605127 dd1: 194.373530 2011-07-14 11:03:23,392 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,393 DEBUG quick_subs reading time range 2011-07-14 11:03:23,393 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 08:57:53 2011-07-14 11:03:23,393 DEBUG quick_subs dd0: 179.605127 dd1: 194.373530 2011-07-14 11:03:23,393 DEBUG quick_subs codas database currently goes from 2011/06/29 14:31:23 to 2011/07/14 08:57:53 2011-07-14 11:03:23,394 DEBUG quick_subs (179.605127 to 194.373530) 2011-07-14 11:03:23,395 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016found existing adcpdb blocks: %s 017found existing adcpdb blocks: %s 018found existing adcpdb blocks: %s 019found existing adcpdb blocks: %s 020found existing adcpdb blocks: %s 021found existing adcpdb blocks: %s 022found existing adcpdb blocks: %s 023found existing adcpdb blocks: %s 024found existing adcpdb blocks: %s 025found existing adcpdb blocks: %s 026found existing adcpdb blocks: %s 027found existing adcpdb blocks: %s 028found existing adcpdb blocks: %s 029found existing adcpdb blocks: %s 030 2011-07-14 11:03:23,397 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 018 019 020 021 022 023 024 025 026 027 028 029 030 031 2011-07-14 11:03:23,397 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024', '025', '026', '027', '028', '029', '030'] 2011-07-14 11:03:23,398 DEBUG quick_subs checked: unloaded blkstrs: ['031'] 2011-07-14 11:03:23,398 DEBUG quick_subs first unloaded file is load/ens_blk031.cmd 2011-07-14 11:03:23,399 DEBUG quick_subs data goes from 2011/07/14 09:08:19 to 2011/07/14 10:59:52 2011-07-14 11:03:23,399 DEBUG quick_subs (194.380775 to 194.458241) 2011-07-14 11:03:23,399 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/at18_07/raw/os75/at2011_179_51971.raw /home/data/at18_07/raw/os75/at2011_179_57600.raw /home/data/at18_07/raw/os75/at2011_179_64800.raw /home/data/at18_07/raw/os75/at2011_179_68195.raw /home/data/at18_07/raw/os75/at2011_179_72000.raw /home/data/at18_07/raw/os75/at2011_179_79200.raw /home/data/at18_07/raw/os75/at2011_180_00000.raw /home/data/at18_07/raw/os75/at2011_180_07200.raw /home/data/at18_07/raw/os75/at2011_180_14400.raw /home/data/at18_07/raw/os75/at2011_180_21600.raw /home/data/at18_07/raw/os75/at2011_180_28800.raw /home/data/at18_07/raw/os75/at2011_180_36000.raw /home/data/at18_07/raw/os75/at2011_180_43200.raw /home/data/at18_07/raw/os75/at2011_180_50400.raw /home/data/at18_07/raw/os75/at2011_180_57600.raw /home/data/at18_07/raw/os75/at2011_180_64800.raw /home/data/at18_07/raw/os75/at2011_180_72000.raw /home/data/at18_07/raw/os75/at2011_180_79200.raw /home/data/at18_07/raw/os75/at2011_181_00000.raw /home/data/at18_07/raw/os75/at2011_181_07200.raw /home/data/at18_07/raw/os75/at2011_181_14400.raw /home/data/at18_07/raw/os75/at2011_181_21600.raw /home/data/at18_07/raw/os75/at2011_181_28800.raw /home/data/at18_07/raw/os75/at2011_181_36000.raw /home/data/at18_07/raw/os75/at2011_181_43200.raw /home/data/at18_07/raw/os75/at2011_181_50400.raw /home/data/at18_07/raw/os75/at2011_181_57600.raw /home/data/at18_07/raw/os75/at2011_181_64800.raw /home/data/at18_07/raw/os75/at2011_181_72000.raw /home/data/at18_07/raw/os75/at2011_181_79200.raw /home/data/at18_07/raw/os75/at2011_182_00000.raw /home/data/at18_07/raw/os75/at2011_182_07200.raw /home/data/at18_07/raw/os75/at2011_182_14400.raw /home/data/at18_07/raw/os75/at2011_182_21600.raw /home/data/at18_07/raw/os75/at2011_182_28800.raw /home/data/at18_07/raw/os75/at2011_182_36000.raw /home/data/at18_07/raw/os75/at2011_182_43200.raw /home/data/at18_07/raw/os75/at2011_182_50400.raw /home/data/at18_07/raw/os75/at2011_182_57600.raw /home/data/at18_07/raw/os75/at2011_182_64800.raw /home/data/at18_07/raw/os75/at2011_182_72000.raw /home/data/at18_07/raw/os75/at2011_182_79200.raw /home/data/at18_07/raw/os75/at2011_183_00000.raw /home/data/at18_07/raw/os75/at2011_183_07200.raw /home/data/at18_07/raw/os75/at2011_183_14400.raw /home/data/at18_07/raw/os75/at2011_183_21600.raw /home/data/at18_07/raw/os75/at2011_183_28800.raw /home/data/at18_07/raw/os75/at2011_183_36000.raw /home/data/at18_07/raw/os75/at2011_183_43200.raw /home/data/at18_07/raw/os75/at2011_183_50400.raw /home/data/at18_07/raw/os75/at2011_183_57600.raw /home/data/at18_07/raw/os75/at2011_183_64800.raw /home/data/at18_07/raw/os75/at2011_183_72000.raw /home/data/at18_07/raw/os75/at2011_183_79200.raw /home/data/at18_07/raw/os75/at2011_184_00000.raw /home/data/at18_07/raw/os75/at2011_184_07200.raw /home/data/at18_07/raw/os75/at2011_184_14400.raw /home/data/at18_07/raw/os75/at2011_184_21600.raw /home/data/at18_07/raw/os75/at2011_184_28800.raw /home/data/at18_07/raw/os75/at2011_184_36000.raw /home/data/at18_07/raw/os75/at2011_184_43200.raw /home/data/at18_07/raw/os75/at2011_184_50400.raw /home/data/at18_07/raw/os75/at2011_184_57600.raw /home/data/at18_07/raw/os75/at2011_184_64800.raw /home/data/at18_07/raw/os75/at2011_184_72000.raw /home/data/at18_07/raw/os75/at2011_184_79200.raw /home/data/at18_07/raw/os75/at2011_185_00000.raw /home/data/at18_07/raw/os75/at2011_185_07200.raw /home/data/at18_07/raw/os75/at2011_185_14400.raw /home/data/at18_07/raw/os75/at2011_185_21600.raw /home/data/at18_07/raw/os75/at2011_185_28800.raw /home/data/at18_07/raw/os75/at2011_185_36000.raw /home/data/at18_07/raw/os75/at2011_185_43200.raw /home/data/at18_07/raw/os75/at2011_185_50400.raw /home/data/at18_07/raw/os75/at2011_185_57600.raw /home/data/at18_07/raw/os75/at2011_185_64800.raw /home/data/at18_07/raw/os75/at2011_185_72000.raw /home/data/at18_07/raw/os75/at2011_185_79200.raw /home/data/at18_07/raw/os75/at2011_186_00000.raw /home/data/at18_07/raw/os75/at2011_186_07200.raw /home/data/at18_07/raw/os75/at2011_186_14400.raw /home/data/at18_07/raw/os75/at2011_186_21600.raw /home/data/at18_07/raw/os75/at2011_186_28800.raw /home/data/at18_07/raw/os75/at2011_186_36000.raw /home/data/at18_07/raw/os75/at2011_186_43200.raw /home/data/at18_07/raw/os75/at2011_186_50400.raw /home/data/at18_07/raw/os75/at2011_186_57600.raw /home/data/at18_07/raw/os75/at2011_186_64800.raw /home/data/at18_07/raw/os75/at2011_186_72000.raw /home/data/at18_07/raw/os75/at2011_186_79200.raw /home/data/at18_07/raw/os75/at2011_187_00000.raw /home/data/at18_07/raw/os75/at2011_187_07200.raw /home/data/at18_07/raw/os75/at2011_187_14400.raw /home/data/at18_07/raw/os75/at2011_187_21600.raw /home/data/at18_07/raw/os75/at2011_187_28800.raw /home/data/at18_07/raw/os75/at2011_187_36000.raw /home/data/at18_07/raw/os75/at2011_187_43200.raw /home/data/at18_07/raw/os75/at2011_187_50400.raw /home/data/at18_07/raw/os75/at2011_187_57600.raw 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/home/data/at18_07/raw/os75/at2011_194_32595.raw /home/data/at18_07/raw/os75/at2011_194_36000.raw 2011-07-14 11:03:23,400 INFO quick_run Thu Jul 14 11:03:23 2011 2011-07-14 11:03:23,400 INFO quick_run about to load uhdas files 2011-07-14 11:03:23,400 INFO quick_run /home/data/at18_07/raw/os75/at2011_179_51971.raw /home/data/at18_07/raw/os75/at2011_179_57600.raw /home/data/at18_07/raw/os75/at2011_179_64800.raw /home/data/at18_07/raw/os75/at2011_179_68195.raw /home/data/at18_07/raw/os75/at2011_179_72000.raw /home/data/at18_07/raw/os75/at2011_179_79200.raw /home/data/at18_07/raw/os75/at2011_180_00000.raw /home/data/at18_07/raw/os75/at2011_180_07200.raw /home/data/at18_07/raw/os75/at2011_180_14400.raw /home/data/at18_07/raw/os75/at2011_180_21600.raw /home/data/at18_07/raw/os75/at2011_180_28800.raw /home/data/at18_07/raw/os75/at2011_180_36000.raw /home/data/at18_07/raw/os75/at2011_180_43200.raw /home/data/at18_07/raw/os75/at2011_180_50400.raw /home/data/at18_07/raw/os75/at2011_180_57600.raw 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/home/data/at18_07/raw/os75/at2011_194_07200.raw /home/data/at18_07/raw/os75/at2011_194_14400.raw /home/data/at18_07/raw/os75/at2011_194_21600.raw /home/data/at18_07/raw/os75/at2011_194_28800.raw /home/data/at18_07/raw/os75/at2011_194_32595.raw /home/data/at18_07/raw/os75/at2011_194_36000.raw 2011-07-14 11:03:23,401 DEBUG quick_setup load/ldcodas.tmp exists 2011-07-14 11:03:23,401 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,401 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/load 2011-07-14 11:03:23,401 DEBUG quick_setup running python command "ldcodas" 2011-07-14 11:03:23,402 DEBUG quick_subs in /home/data/at18_07/proc/os75nb/load 2011-07-14 11:03:23,403 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024', '025', '026', '027', '028', '029', '030'] 2011-07-14 11:03:23,404 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024', '025', '026', '027', '028', '029', '030', '031'] 2011-07-14 11:03:23,405 DEBUG quick_subs starttime is 2011/07/14 09:08:19 2011-07-14 11:03:23,405 DEBUG quick_subs RESETTING thisload_time_range 2011-07-14 11:03:23,405 DEBUG quick_subs time range of data to be loaded: 2011/07/14 09:08:19 to 2011/07/14 10:59:52 2011-07-14 11:03:23,406 DEBUG quick_subs data startdd 194.380775 data enddd 194.458241 2011-07-14 11:03:23,406 DEBUG quick_subs about to load from these cmd files ['ens_blk031.cmd'] 2011-07-14 11:03:23,406 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk031.cmd 2011-07-14 11:03:23,407 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2011-07-14 11:03:23,425 DEBUG quick_subs removing a_atdir.blk 2011-07-14 11:03:23,427 DEBUG quick_subs about to run mkblkdir 2011-07-14 11:03:23,428 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-07-14 11:03:23,428 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-07-14 11:03:23,448 DEBUG quick_subs database passes. 2011-07-14 11:03:23,448 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-07-14 11:03:23,448 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,449 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,449 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,449 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,450 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,451 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 10:59:38 2011-07-14 11:03:23,451 DEBUG quick_subs dd0: 179.605127 dd1: 194.458079 2011-07-14 11:03:23,452 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2011-07-14 11:03:23,452 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,452 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,452 DEBUG quick_setup running python command "get_time_range" 2011-07-14 11:03:23,453 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-07-14 11:03:23,454 DEBUG quick_subs extracting time range 2011-07-14 11:03:23,454 DEBUG quick_subs start_end_time 2011/06/29 14:31:23 to 2011/07/14 10:59:38 2011-07-14 11:03:23,455 DEBUG quick_subs dd0: 179.605127 dd1: 194.458079 2011-07-14 11:03:23,455 DEBUG quick_adcp loaded_time_range is 2011/06/29 14:31:23 to 2011/07/14 10:59:38 2011-07-14 11:03:23,455 DEBUG quick_adcp (179.605127 to 194.458079) 2011-07-14 11:03:23,456 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,456 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/adcpdb 2011-07-14 11:03:23,456 DEBUG quick_setup running python command "lst_conf" 2011-07-14 11:03:23,457 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2011-07-14 11:03:23,457 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2011-07-14 11:03:23,520 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2011-07-14 11:03:23,520 DEBUG quick_run executing commands from /home/data/at18_07/proc/os75nb/edit 2011-07-14 11:03:23,520 DEBUG quick_run setup.m exists. not replacing 2011-07-14 11:03:23,521 DEBUG quick_run asetup.m exists. not replacing 2011-07-14 11:03:23,521 DEBUG quick_run aflagit_setup.m exists. not replacing 2011-07-14 11:03:23,521 DEBUG quick_run ------------ step 4: run setflags ------------- 2011-07-14 11:03:23,521 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,522 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/edit 2011-07-14 11:03:23,522 DEBUG quick_setup running python command "setflags" 2011-07-14 11:03:23,522 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2011-07-14 11:03:23,523 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-07-14 11:03:23,655 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2011-07-14 11:03:23,656 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,656 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:23,656 DEBUG quick_setup running python command "catnav" 2011-07-14 11:03:23,664 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2011-07-14 11:03:23,664 DEBUG quick_run hcorr_inst is phins 2011-07-14 11:03:23,664 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2011-07-14 11:03:23,664 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,665 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/cal/rotate 2011-07-14 11:03:23,665 DEBUG quick_setup running python command "lst_hdg" 2011-07-14 11:03:23,665 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2011-07-14 11:03:23,666 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2011-07-14 11:03:23,744 DEBUG quick_run no available heading correction function specified 2011-07-14 11:03:23,744 DEBUG quick_run ------------ step 7: rotate ------------- 2011-07-14 11:03:23,745 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,745 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/cal/rotate 2011-07-14 11:03:23,745 DEBUG quick_setup running python command "rotated" 2011-07-14 11:03:23,819 DEBUG quick_subs last rotated time from log file: 2011/07/14 10:29:29 2011-07-14 11:03:23,819 DEBUG quick_subs time range of currently loaded data: 2011/06/29 14:31:23 to 2011/07/14 10:59:38 2011-07-14 11:03:23,820 DEBUG quick_subs (179.605127 to 194.458079) 2011-07-14 11:03:23,822 DEBUG quick_setup cal/rotate/rotate.tmp exists 2011-07-14 11:03:23,822 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,822 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/cal/rotate 2011-07-14 11:03:23,823 DEBUG quick_setup running python command "rotate" 2011-07-14 11:03:23,823 DEBUG quick_subs DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2011/07/14 09:08:19 to 2011/07/14 10:59:52 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2011-07-14 11:03:23,824 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2011-07-14 11:03:23,834 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-07-14 11:03:23,835 DEBUG quick_setup nav/as_nav.tmp exists 2011-07-14 11:03:23,835 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:23,836 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:23,836 DEBUG quick_setup running python command "as_nav" 2011-07-14 11:03:23,836 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/06/29 14:31:23 to 2011/07/14 10:59:38 /* the whole time range */ 2011-07-14 11:03:23,837 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-07-14 11:03:24,019 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-07-14 11:03:24,019 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:24,020 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:24,020 DEBUG quick_setup running python command "refabs" 2011-07-14 11:03:24,020 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-07-14 11:03:24,021 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-07-14 11:03:24,132 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-07-14 11:03:24,132 DEBUG quick_setup nav/smoothr.tmp exists 2011-07-14 11:03:24,133 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:24,133 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:24,133 DEBUG quick_setup running python command "smoothr" 2011-07-14 11:03:24,134 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-07-14 11:03:24,134 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-07-14 11:03:25,146 DEBUG quick_adcp about to run numpy refsm 2011-07-14 11:03:25,147 DEBUG quick_npy Starting: refsm 2011-07-14 11:03:25,544 INFO nav dtmin = -0.50 dtmax = 0.50 2011-07-14 11:03:26,370 DEBUG quick_npy Ending: refsm 2011-07-14 11:03:26,371 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-07-14 11:03:26,371 DEBUG quick_setup nav/putnav.tmp exists 2011-07-14 11:03:26,371 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:26,372 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:26,372 DEBUG quick_setup running python command "putnav" 2011-07-14 11:03:26,372 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-07-14 11:03:26,373 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-07-14 11:03:26,553 DEBUG quick_adcp plotting navigation 2011-07-14 11:03:26,554 DEBUG quick_mpl Starting plot: nav 2011-07-14 11:03:27,533 DEBUG quick_mpl Ending plot: nav 2011-07-14 11:03:27,534 DEBUG quick_mpl Starting plot: refl 2011-07-14 11:03:27,959 DEBUG quick_mplplots found 14.845930 days of data 2011-07-14 11:03:27,960 DEBUG quick_mplplots start day is 179.000000 2011-07-14 11:03:27,960 DEBUG quick_mplplots figures with 2.000000 days per page 2011-07-14 11:03:27,961 DEBUG quick_mplplots printing 8 pages 2011-07-14 11:03:27,961 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-07-14 11:03:27,961 INFO quick_mplplots startdd is 179.0 2011-07-14 11:03:27,961 INFO quick_mplplots dt is 2.0 2011-07-14 11:03:36,361 DEBUG quick_mpl Ending plot: refl 2011-07-14 11:03:36,362 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2011-07-14 11:03:36,362 DEBUG quick_run find profile flags ------------ *** ------------- 2011-07-14 11:03:36,362 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:36,362 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/edit 2011-07-14 11:03:36,363 DEBUG quick_setup running python command "aedit" 2011-07-14 11:03:38,849 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2011-07-14 11:03:38,849 DEBUG quick_run starting in: /home/data/at18_07/proc/os75nb 2011-07-14 11:03:38,850 DEBUG quick_run executing commands from: edit 2011-07-14 11:03:38,855 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_at abottom_tmp.asc 2011-07-14 11:03:38,864 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_at abadbin_tmp.asc 2011-07-14 11:03:38,877 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_at 30 2011-07-14 11:03:38,888 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-07-14 11:03:39,017 DEBUG quick_run changing directories back to /home/data/at18_07/proc/os75nb 2011-07-14 11:03:39,017 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2011-07-14 11:03:39,018 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-07-14 11:03:39,018 DEBUG quick_setup nav/as_nav.tmp exists 2011-07-14 11:03:39,018 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:39,019 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:39,019 DEBUG quick_setup running python command "as_nav" 2011-07-14 11:03:39,019 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/06/29 14:31:23 to 2011/07/14 10:59:38 /* the whole time range */ 2011-07-14 11:03:39,020 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-07-14 11:03:39,182 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-07-14 11:03:39,183 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:39,183 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:39,183 DEBUG quick_setup running python command "refabs" 2011-07-14 11:03:39,183 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-07-14 11:03:39,184 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-07-14 11:03:39,294 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-07-14 11:03:39,295 DEBUG quick_setup nav/smoothr.tmp exists 2011-07-14 11:03:39,295 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:39,295 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:39,296 DEBUG quick_setup running python command "smoothr" 2011-07-14 11:03:39,296 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-07-14 11:03:39,296 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-07-14 11:03:40,101 DEBUG quick_adcp running refsm 2011-07-14 11:03:40,102 DEBUG quick_npy Starting: refsm 2011-07-14 11:03:40,704 INFO nav dtmin = -0.50 dtmax = 0.50 2011-07-14 11:03:41,449 DEBUG quick_npy Ending: refsm 2011-07-14 11:03:41,450 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-07-14 11:03:41,450 DEBUG quick_setup nav/putnav.tmp exists 2011-07-14 11:03:41,451 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:41,451 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:41,451 DEBUG quick_setup running python command "putnav" 2011-07-14 11:03:41,452 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-07-14 11:03:41,452 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-07-14 11:03:41,643 DEBUG quick_mpl Starting plot: nav 2011-07-14 11:03:42,645 DEBUG quick_mpl Ending plot: nav 2011-07-14 11:03:42,645 DEBUG quick_mpl Starting plot: refl 2011-07-14 11:03:43,085 DEBUG quick_mplplots found 14.845930 days of data 2011-07-14 11:03:43,085 DEBUG quick_mplplots start day is 179.000000 2011-07-14 11:03:43,086 DEBUG quick_mplplots figures with 2.000000 days per page 2011-07-14 11:03:43,086 DEBUG quick_mplplots printing 8 pages 2011-07-14 11:03:43,086 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-07-14 11:03:43,087 INFO quick_mplplots startdd is 179.0 2011-07-14 11:03:43,087 INFO quick_mplplots dt is 2.0 2011-07-14 11:03:51,520 DEBUG quick_mpl Ending plot: refl 2011-07-14 11:03:51,520 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2011-07-14 11:03:51,521 DEBUG quick_setup edit/lst_temp.tmp exists 2011-07-14 11:03:51,521 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:51,522 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/edit 2011-07-14 11:03:51,522 DEBUG quick_setup running python command "lst_temp" 2011-07-14 11:03:51,522 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at.tem step_size= 1 year_base= 2011 time_ranges: all 2011-07-14 11:03:51,523 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2011-07-14 11:03:51,614 DEBUG quick_mpl Starting plot: temp 2011-07-14 11:03:51,753 DEBUG quick_mplplots plotting 4260 points 2011-07-14 11:03:52,467 DEBUG quick_mpl Ending plot: temp 2011-07-14 11:03:52,468 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2011-07-14 11:03:52,468 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2011-07-14 11:03:52,469 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:52,469 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/cal/botmtrk 2011-07-14 11:03:52,470 DEBUG quick_setup running python command "lst_btrk" 2011-07-14 11:03:52,470 DEBUG quick_subs dbname: ../../adcpdb/a_at output: a_at.btm step_size= 1 year_base= 2011 time_ranges: 2011/06/29 14:31:23 to 2011/07/14 10:59:38 /* whole time range */ 2011-07-14 11:03:52,471 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2011-07-14 11:03:52,509 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2011-07-14 11:03:52,509 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:52,509 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/cal/botmtrk 2011-07-14 11:03:52,510 DEBUG quick_setup running python command "refabsbt" 2011-07-14 11:03:52,510 DEBUG quick_subs fix_file_type: simple reference_file: a_at.btm fix_file: ../../nav/a_at.gps output: a_at.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2011-07-14 11:03:52,511 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2011-07-14 11:03:52,590 DEBUG quick_mpl Starting plot: btcal 2011-07-14 11:03:54,039 DEBUG quick_mpl Ending plot: btcal 2011-07-14 11:03:54,040 DEBUG quick_setup nav/as_nav.tmp exists 2011-07-14 11:03:54,040 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:54,040 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/nav 2011-07-14 11:03:54,041 DEBUG quick_setup running python command "as_nav" 2011-07-14 11:03:54,041 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/06/29 14:31:23 to 2011/07/14 10:59:38 /* the whole time range */ 2011-07-14 11:03:54,042 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-07-14 11:03:54,205 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2011-07-14 11:03:54,206 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:54,206 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/cal/watertrk 2011-07-14 11:03:54,207 DEBUG quick_setup running python command "timslip" 2011-07-14 11:03:54,207 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_at.gps reference_file: ../../nav/a_at.nav output_file: a_at_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2011-07-14 11:03:54,208 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2011-07-14 11:03:54,248 DEBUG quick_mpl Starting plot: wtcal 2011-07-14 11:03:54,253 DEBUG quick_mplplots Found 11 calibration points 2011-07-14 11:03:56,917 DEBUG quick_mpl Ending plot: wtcal 2011-07-14 11:03:56,917 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2011-07-14 11:03:56,918 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:56,918 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/vector 2011-07-14 11:03:56,918 DEBUG quick_setup running python command "timegrid" 2011-07-14 11:03:56,919 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2011-07-14 11:03:56,929 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:56,930 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/vector 2011-07-14 11:03:56,930 DEBUG quick_setup running python command "as_vect" 2011-07-14 11:03:56,931 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2011-07-14 11:03:57,197 DEBUG quick_asect done making vector matfiles 2011-07-14 11:03:57,198 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:57,198 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/contour 2011-07-14 11:03:57,198 DEBUG quick_setup running python command "timegrid" 2011-07-14 11:03:57,199 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2011-07-14 11:03:57,216 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:57,216 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/contour 2011-07-14 11:03:57,217 DEBUG quick_setup running python command "as_cont" 2011-07-14 11:03:57,217 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2011-07-14 11:03:57,595 DEBUG quick_setup starting in /home/data/at18_07/proc/os75nb 2011-07-14 11:03:57,596 DEBUG quick_setup executing commands from /home/data/at18_07/proc/os75nb/contour 2011-07-14 11:03:57,596 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_at 2011-07-14 11:03:58,335 DEBUG quick_asect done running getmat with "allbins" 2011-07-14 11:03:58,407 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2011-07-14 11:03:58,407 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2011-07-14 11:03:58,408 DEBUG root matfile is contour/contour_uv.mat 2011-07-14 11:03:58,421 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2011-07-14 11:03:58,421 DEBUG root matfile is vector/vector_uv.mat 2011-07-14 11:03:58,423 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2011-07-14 11:03:58,423 DEBUG root matfile is contour/contour_xy.mat 2011-07-14 11:03:58,424 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2011-07-14 11:03:58,425 DEBUG root matfile is vector/vector_xy.mat 2011-07-14 11:03:58,425 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2011-07-14 11:03:58,426 DEBUG root about to copy file edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2011-07-14 11:03:58,427 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2011-07-14 11:03:58,428 INFO root Ending quick_adcp.py 2011-07-14 11:03:58,533 DEBUG quick_setup killed matlab engine