%%%%%%%%%%%%%%%%%%%%% raw logging %%%%%%%%%%%%%%%%%%

%% cruise configuration file template, used by cruisesetup.py
%% to write  __cruiseid__cfg.m

%% Things marked with arrows may change if the installation
%% changes; this may be automated later, but for now it must
%% be done manually.

%% these variables are used by quick_adcp.py


yearbase = __yearbase__;               % yearbase
cruiseid = '__cruiseid__';             % a title string, cruise designation
uhdas_dir = '__uhdas_dirbase__';   % root for dirs: raw, rbin, gbin, proc

%% startcruise.py should get instrument names from config/sensor_cfg.py



%%  This cellarray "msg_info" holds a list of all possible serially-logged rbin
%%  directories and the message names extracted from them.  This is
%%  only edited to ADD a new instrument.  Instruments with rbin files
%%  available are extracted as needed (see below for determination of "best"
%%  --> See "help get_instfields"   for more info
%%
%%      directory    extension   extension
%%                    to read     to write
%%     -----------  ---------   ----------
%%       {'gyro'  ,    'hdg',        %% gyro heading
%%       'gyro'  ,    'hnc',        %% gyro heading
%%       'ashtech',  'adu',         %% attitudes from adu
%%       'posmv',    'pmv',         %% attitudes from posmv
%%       'seapath',  'sea',         %% attitudes from seapath
%%       %
%%       'gpsnav',   'gps',         %% positions from generic GGA (eg. pcode)
%%       'simrad',   'gps',         %% positions from simrad
%%       'ashtech',  'gps',         %% positions from adu
%%       'posmv',    'gps',         %% positions from posmv
%%       'seapath',  'sea_gps',     %% positions from seapath
%%       %
%%       'sndspd',   'spd',         %% soundspeed sensor (polar ships)
%%
%% %if msg_info is specified below, it overrides the default (which
%%          uses everthing)

%% Now choose the rules to use to get 'best' position and attitude:
%% Only include the fields with values; they must be IN ORDER
%% (1) choose the variables to get 'best' versions of:

best.rules = {'gps', 'heading', 'pitch', 'roll'};



%% (2) Choose the instrument to get the field from:
%%
%%                   instrument        message
%%                   ---------        --------
best.gps_rule  =    {'gpsnav',        'gps'};  %% usually pcode or other gps 
best.heading_rule = {'gyro',           'hnc'};  %% "best" = "most reliable"
best.pitch_rule =   {'ashtech',        'adu'};  %% recorded but not implemented
best.roll_rule  =   {'ashtech',        'adu'};  %% recorded but not implemented

msg_info = {'gyro'  ,    'hnc', 
            'ashtech',  'adu',         %% attitudes from adu
            'ashtech',  'gps',         %% attitudes from adu
            'gpsnav',   'gps',         %% positions from GP90
            'gpsnav2',  'gps'};         %% positions from MX421



%% choose instrument to correct gyro  (at sea: this field was created
%%        using the value specified in  procsetup_onship.py)
%% Must be an available attitude.  "disable" by setting to 'gyro';
hcorr_inst = 'ashtech';  %% eg 'posmv'



% set full paths to raw  bin, gbin, and processing  directories
rawdir   =  fullfile(uhdas_dir, 'raw');
rbindir  =  fullfile(uhdas_dir, 'rbin');

% directory to write processing log files
logfpath  =  fullfile(uhdas_dir, 'proc/proclog');


%%%%%%%%%%%%%%%%%% processing (quick_adcp.py) %%%%%%%%%%%%%%%%%%

gbindirbase  =  fullfile(uhdas_dir, 'gbin');    %<--
         %contains son125, os38b, os38n for gbin subdirs (time, best...)