2015-08-17 14:49:20,489 ERROR repeater task os150nb_3dayplots returncode 1 2015-08-17 14:49:20,491 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq 2015-08-17 14:49:20,491 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-08-17 14:49:20,492 INFO repeater task os150nb_tsstats starting 1.0 seconds late 2015-08-17 14:49:20,812 ERROR repeater task os150nb_tsstats returncode 1 2015-08-17 14:49:20,813 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq has no block directory 2015-08-17 14:49:20,813 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-08-17 14:49:20,814 INFO repeater task os75nb_quick starting 1.3 seconds late 2015-08-17 14:49:27,325 INFO repeater task os75nb_quick ended after 6.5 seconds 2015-08-17 14:49:27,325 INFO repeater task os75nb_3dayplots starting 7.8 seconds late 2015-08-17 14:49:41,439 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-08-17 14:49:41,440 INFO repeater task os75nb_3dayplots ended after 14.1 seconds 2015-08-17 14:49:41,441 INFO repeater task os75nb_tsstats starting 22.0 seconds late 2015-08-17 14:49:42,497 INFO repeater task os75nb_tsstats ended after 1.1 seconds 2015-08-17 14:49:42,498 INFO repeater task os150nb_beamplots starting 23.0 seconds late 2015-08-17 14:49:42,929 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 14:49:42,929 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 14:49:42,929 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-08-17 14:49:42,930 INFO repeater task os150nb_beamplots starting 23.4 seconds late 2015-08-17 14:49:43,394 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 14:49:43,394 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 14:49:43,395 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 14:49:43,396 INFO repeater task os75nb_beamplots starting 23.9 seconds late 2015-08-17 14:49:45,102 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 14:49:45,102 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 14:49:45,103 INFO repeater task os75nb_beamplots starting 25.6 seconds late 2015-08-17 14:49:46,771 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 14:49:46,772 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 14:49:46,773 INFO repeater task seapath_hcorrstats starting 27.3 seconds late 2015-08-17 14:49:47,764 INFO repeater task seapath_hcorrstats ended after 1.0 seconds 2015-08-17 14:49:47,765 INFO repeater task gyro2_hcorrstats starting 28.3 seconds late 2015-08-17 14:49:48,755 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-08-17 14:49:53,761 INFO repeater task os150nb_lastensq starting 4.3 seconds late 2015-08-17 14:49:54,452 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 14:49:54,453 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 14:49:54,453 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 14:49:54,453 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 14:49:54,456 INFO repeater task os75nb_lastensq starting 24.5 seconds late 2015-08-17 14:49:56,417 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 14:49:56,417 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 14:49:20 2015-08-17 14:50:41,530 INFO repeater task os150nb_10pings starting 2.1 seconds late 2015-08-17 14:50:41,714 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 14:50:41,715 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 14:50:41,715 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 14:50:41,717 INFO repeater task os75nb_10pings starting 2.2 seconds late 2015-08-17 14:50:41,899 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 14:54:22,477 INFO repeater task seapath_hcorrstats starting 3.0 seconds late 2015-08-17 14:54:23,473 INFO repeater task seapath_hcorrstats ended after 1.0 seconds 2015-08-17 14:54:23,474 INFO repeater task gyro2_hcorrstats starting 4.0 seconds late 2015-08-17 14:54:24,548 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 14:54:34,572 INFO repeater task os75nb_lastensq starting 4.6 seconds late 2015-08-17 14:54:36,585 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 14:54:36,586 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 14:54:20 2015-08-17 14:55:01,641 INFO repeater task os150nb_lastensq starting 2.2 seconds late 2015-08-17 14:55:02,314 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 14:55:02,315 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 14:55:02,315 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 14:55:02,315 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 14:56:02,476 INFO repeater task os150nb_10pings starting 3.0 seconds late 2015-08-17 14:56:02,664 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 14:56:02,664 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 14:56:02,664 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 14:56:02,667 INFO repeater task os75nb_10pings starting 3.2 seconds late 2015-08-17 14:56:02,858 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 14:59:23,380 INFO repeater task seapath_hcorrstats starting 3.9 seconds late 2015-08-17 14:59:24,479 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 14:59:24,479 INFO repeater task gyro2_hcorrstats starting 5.0 seconds late 2015-08-17 14:59:25,578 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 14:59:30,586 INFO repeater task os75nb_lastensq starting 0.6 seconds late 2015-08-17 14:59:32,628 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 14:59:32,629 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 14:59:20 2015-08-17 15:00:12,729 INFO repeater task os150nb_lastensq starting 3.3 seconds late 2015-08-17 15:00:13,429 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:00:13,430 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:00:13,430 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:00:13,430 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:01:23,612 INFO repeater task os150nb_10pings starting 4.1 seconds late 2015-08-17 15:01:23,808 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:01:23,809 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:01:23,809 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:01:23,812 INFO repeater task os75nb_10pings starting 4.3 seconds late 2015-08-17 15:01:24,009 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:04:24,475 INFO repeater task os150nb_quick starting 5.0 seconds late 2015-08-17 15:04:24,961 ERROR repeater task os150nb_quick returncode 2 2015-08-17 15:04:24,962 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-08-17 15:04:24,962 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-08-17 15:04:24,963 INFO repeater task os150nb_3dayplots starting 5.5 seconds late 2015-08-17 15:04:25,423 ERROR repeater task os150nb_3dayplots returncode 1 2015-08-17 15:04:25,423 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq 2015-08-17 15:04:25,423 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-08-17 15:04:25,423 INFO repeater task os150nb_tsstats starting 5.9 seconds late 2015-08-17 15:04:25,755 ERROR repeater task os150nb_tsstats returncode 1 2015-08-17 15:04:25,755 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq has no block directory 2015-08-17 15:04:25,755 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-08-17 15:04:25,756 INFO repeater task os75nb_quick starting 6.3 seconds late 2015-08-17 15:04:31,947 INFO repeater task os75nb_quick ended after 6.2 seconds 2015-08-17 15:04:31,947 INFO repeater task os75nb_3dayplots starting 12.5 seconds late 2015-08-17 15:04:46,043 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-08-17 15:04:46,043 INFO repeater task os75nb_3dayplots ended after 14.1 seconds 2015-08-17 15:04:46,044 INFO repeater task os75nb_tsstats starting 26.6 seconds late 2015-08-17 15:04:47,042 INFO repeater task os75nb_tsstats ended after 1.0 seconds 2015-08-17 15:04:47,043 INFO repeater task os150nb_beamplots starting 27.6 seconds late 2015-08-17 15:04:47,513 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:04:47,514 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:04:47,514 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 15:04:47,515 INFO repeater task os150nb_beamplots starting 28.0 seconds late 2015-08-17 15:04:47,991 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:04:47,991 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:04:47,992 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 15:04:47,992 INFO repeater task os75nb_beamplots starting 28.5 seconds late 2015-08-17 15:04:49,696 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:04:49,696 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 15:04:49,697 INFO repeater task os75nb_beamplots starting 30.2 seconds late 2015-08-17 15:04:51,387 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:04:51,388 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 15:04:51,389 INFO repeater task seapath_hcorrstats starting 31.9 seconds late 2015-08-17 15:04:52,494 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:04:52,494 INFO repeater task gyro2_hcorrstats starting 33.0 seconds late 2015-08-17 15:04:53,580 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:04:58,589 INFO repeater task os75nb_lastensq starting 28.6 seconds late 2015-08-17 15:05:00,471 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2015-08-17 15:05:00,472 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:04:20 2015-08-17 15:05:20,523 INFO repeater task os150nb_lastensq starting 1.0 seconds late 2015-08-17 15:05:21,243 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:05:21,243 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:05:21,244 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:05:21,244 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:06:41,450 INFO repeater task os150nb_10pings starting 2.0 seconds late 2015-08-17 15:06:41,648 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:06:41,649 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:06:41,649 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:06:41,652 INFO repeater task os75nb_10pings starting 2.2 seconds late 2015-08-17 15:06:41,848 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:09:22,270 INFO repeater task seapath_hcorrstats starting 2.8 seconds late 2015-08-17 15:09:23,363 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:09:23,364 INFO repeater task gyro2_hcorrstats starting 3.9 seconds late 2015-08-17 15:09:24,371 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-08-17 15:09:34,391 INFO repeater task os75nb_lastensq starting 4.4 seconds late 2015-08-17 15:09:36,452 INFO repeater task os75nb_lastensq ended after 2.1 seconds 2015-08-17 15:09:36,453 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:09:20 2015-08-17 15:10:31,589 INFO repeater task os150nb_lastensq starting 2.1 seconds late 2015-08-17 15:10:32,304 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:10:32,304 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:10:32,305 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:10:32,305 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:12:02,543 INFO repeater task os150nb_10pings starting 3.1 seconds late 2015-08-17 15:12:02,731 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:12:02,731 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:12:02,731 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:12:02,732 INFO repeater task os75nb_10pings starting 3.3 seconds late 2015-08-17 15:12:02,925 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:14:23,289 INFO repeater task seapath_hcorrstats starting 3.8 seconds late 2015-08-17 15:14:24,378 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:14:24,379 INFO repeater task gyro2_hcorrstats starting 4.9 seconds late 2015-08-17 15:14:25,474 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:14:30,482 INFO repeater task os75nb_lastensq starting 0.5 seconds late 2015-08-17 15:14:32,478 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 15:14:32,479 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:14:20 2015-08-17 15:15:42,648 INFO repeater task os150nb_lastensq starting 3.2 seconds late 2015-08-17 15:15:43,334 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:15:43,334 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:15:43,334 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:15:43,334 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:17:23,592 INFO repeater task os150nb_10pings starting 4.1 seconds late 2015-08-17 15:17:23,787 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:17:23,787 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:17:23,787 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:17:23,789 INFO repeater task os75nb_10pings starting 4.3 seconds late 2015-08-17 15:17:23,986 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:19:24,296 INFO repeater task os150nb_quick starting 4.8 seconds late 2015-08-17 15:19:24,792 ERROR repeater task os150nb_quick returncode 2 2015-08-17 15:19:24,793 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-08-17 15:19:24,793 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-08-17 15:19:24,794 INFO repeater task os150nb_3dayplots starting 5.3 seconds late 2015-08-17 15:19:25,253 ERROR repeater task os150nb_3dayplots returncode 1 2015-08-17 15:19:25,253 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq 2015-08-17 15:19:25,254 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-08-17 15:19:25,255 INFO repeater task os150nb_tsstats starting 5.8 seconds late 2015-08-17 15:19:25,573 ERROR repeater task os150nb_tsstats returncode 1 2015-08-17 15:19:25,573 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq has no block directory 2015-08-17 15:19:25,573 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-08-17 15:19:25,574 INFO repeater task os75nb_quick starting 6.1 seconds late 2015-08-17 15:19:32,041 INFO repeater task os75nb_quick ended after 6.5 seconds 2015-08-17 15:19:32,042 INFO repeater task os75nb_3dayplots starting 12.6 seconds late 2015-08-17 15:19:46,316 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-08-17 15:19:46,316 INFO repeater task os75nb_3dayplots ended after 14.3 seconds 2015-08-17 15:19:46,317 INFO repeater task os75nb_tsstats starting 26.8 seconds late 2015-08-17 15:19:47,296 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:1073: RuntimeWarning: overflow encountered in true_divide result = self.f(da, db, *args, **kwargs) 2015-08-17 15:19:47,296 INFO repeater task os75nb_tsstats ended after 1.0 seconds 2015-08-17 15:19:47,297 INFO repeater task os150nb_beamplots starting 27.8 seconds late 2015-08-17 15:19:47,723 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:19:47,723 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:19:47,724 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-08-17 15:19:47,724 INFO repeater task os150nb_beamplots starting 28.2 seconds late 2015-08-17 15:19:48,194 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:19:48,195 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:19:48,195 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 15:19:48,196 INFO repeater task os75nb_beamplots starting 28.7 seconds late 2015-08-17 15:19:49,886 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:19:49,887 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 15:19:49,887 INFO repeater task os75nb_beamplots starting 30.4 seconds late 2015-08-17 15:19:51,474 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:19:51,474 INFO repeater task os75nb_beamplots ended after 1.6 seconds 2015-08-17 15:19:51,475 INFO repeater task seapath_hcorrstats starting 32.0 seconds late 2015-08-17 15:19:52,550 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:19:52,551 INFO repeater task gyro2_hcorrstats starting 33.1 seconds late 2015-08-17 15:19:53,638 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:19:58,647 INFO repeater task os75nb_lastensq starting 28.6 seconds late 2015-08-17 15:20:00,646 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 15:20:00,646 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:19:20 2015-08-17 15:20:50,764 INFO repeater task os150nb_lastensq starting 1.3 seconds late 2015-08-17 15:20:51,463 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:20:51,464 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:20:51,464 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:20:51,464 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:22:41,749 INFO repeater task os150nb_10pings starting 2.3 seconds late 2015-08-17 15:22:41,942 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:22:41,942 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:22:41,943 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:22:41,945 INFO repeater task os75nb_10pings starting 2.5 seconds late 2015-08-17 15:22:42,140 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:24:22,410 INFO repeater task seapath_hcorrstats starting 2.9 seconds late 2015-08-17 15:24:23,486 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:24:23,486 INFO repeater task gyro2_hcorrstats starting 4.0 seconds late 2015-08-17 15:24:24,550 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:24:34,571 INFO repeater task os75nb_lastensq starting 4.6 seconds late 2015-08-17 15:24:36,550 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 15:24:36,551 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:24:20 2015-08-17 15:26:01,772 INFO repeater task os150nb_lastensq starting 2.3 seconds late 2015-08-17 15:26:02,482 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:26:02,482 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:26:02,483 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:26:02,483 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:28:02,799 INFO repeater task os150nb_10pings starting 3.3 seconds late 2015-08-17 15:28:02,996 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:28:02,997 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:28:02,997 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:28:02,999 INFO repeater task os75nb_10pings starting 3.5 seconds late 2015-08-17 15:28:03,195 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:29:23,399 INFO repeater task seapath_hcorrstats starting 3.9 seconds late 2015-08-17 15:29:24,498 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:29:24,499 INFO repeater task gyro2_hcorrstats starting 5.0 seconds late 2015-08-17 15:29:25,585 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:29:30,593 INFO repeater task os75nb_lastensq starting 0.6 seconds late 2015-08-17 15:29:32,485 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-08-17 15:29:32,486 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2015-08-17 15:29:32,486 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:29:20 2015-08-17 15:31:12,739 INFO repeater task os150nb_lastensq starting 3.3 seconds late 2015-08-17 15:31:13,427 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:31:13,428 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:31:13,428 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:31:13,429 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:33:23,769 INFO repeater task os150nb_10pings starting 4.3 seconds late 2015-08-17 15:33:23,965 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:33:23,966 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:33:23,966 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:33:23,968 INFO repeater task os75nb_10pings starting 4.5 seconds late 2015-08-17 15:33:24,161 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:34:24,315 INFO repeater task os150nb_quick starting 4.8 seconds late 2015-08-17 15:34:24,774 ERROR repeater task os150nb_quick returncode 2 2015-08-17 15:34:24,775 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-08-17 15:34:24,775 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-08-17 15:34:24,776 INFO repeater task os150nb_3dayplots starting 5.3 seconds late 2015-08-17 15:34:25,224 ERROR repeater task os150nb_3dayplots returncode 1 2015-08-17 15:34:25,225 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq 2015-08-17 15:34:25,225 INFO repeater task os150nb_3dayplots ended after 0.4 seconds 2015-08-17 15:34:25,226 INFO repeater task os150nb_tsstats starting 5.7 seconds late 2015-08-17 15:34:25,558 ERROR repeater task os150nb_tsstats returncode 1 2015-08-17 15:34:25,558 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq has no block directory 2015-08-17 15:34:25,559 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-08-17 15:34:25,560 INFO repeater task os75nb_quick starting 6.1 seconds late 2015-08-17 15:34:31,929 INFO repeater task os75nb_quick ended after 6.4 seconds 2015-08-17 15:34:31,930 INFO repeater task os75nb_3dayplots starting 12.5 seconds late 2015-08-17 15:34:45,876 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-08-17 15:34:45,876 INFO repeater task os75nb_3dayplots ended after 13.9 seconds 2015-08-17 15:34:45,876 INFO repeater task os75nb_tsstats starting 26.4 seconds late 2015-08-17 15:34:46,951 INFO repeater task os75nb_tsstats ended after 1.1 seconds 2015-08-17 15:34:46,952 INFO repeater task os150nb_beamplots starting 27.5 seconds late 2015-08-17 15:34:47,426 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:34:47,426 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:34:47,427 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 15:34:47,427 INFO repeater task os150nb_beamplots starting 27.9 seconds late 2015-08-17 15:34:47,868 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:34:47,868 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:34:47,869 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-08-17 15:34:47,869 INFO repeater task os75nb_beamplots starting 28.4 seconds late 2015-08-17 15:34:49,556 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:34:49,556 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 15:34:49,557 INFO repeater task os75nb_beamplots starting 30.1 seconds late 2015-08-17 15:34:51,262 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:34:51,263 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 15:34:51,264 INFO repeater task seapath_hcorrstats starting 31.8 seconds late 2015-08-17 15:34:52,254 INFO repeater task seapath_hcorrstats ended after 1.0 seconds 2015-08-17 15:34:52,254 INFO repeater task gyro2_hcorrstats starting 32.8 seconds late 2015-08-17 15:34:53,356 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:34:58,363 INFO repeater task os75nb_lastensq starting 28.4 seconds late 2015-08-17 15:35:00,385 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 15:35:00,385 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:34:20 2015-08-17 15:36:20,584 INFO repeater task os150nb_lastensq starting 1.1 seconds late 2015-08-17 15:36:21,280 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:36:21,281 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:36:21,281 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:36:21,282 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:38:41,641 INFO repeater task os150nb_10pings starting 2.2 seconds late 2015-08-17 15:38:41,835 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:38:41,836 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:38:41,836 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:38:41,838 INFO repeater task os75nb_10pings starting 2.4 seconds late 2015-08-17 15:38:42,038 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:39:22,151 INFO repeater task seapath_hcorrstats starting 2.7 seconds late 2015-08-17 15:39:23,248 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:39:23,249 INFO repeater task gyro2_hcorrstats starting 3.8 seconds late 2015-08-17 15:39:24,357 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:39:34,379 INFO repeater task os75nb_lastensq starting 4.4 seconds late 2015-08-17 15:39:36,291 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2015-08-17 15:39:36,292 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:39:20 2015-08-17 15:41:31,568 INFO repeater task os150nb_lastensq starting 2.1 seconds late 2015-08-17 15:41:32,281 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:41:32,281 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:41:32,282 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:41:32,282 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:44:02,677 INFO repeater task os150nb_10pings starting 3.2 seconds late 2015-08-17 15:44:02,870 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:44:02,870 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:44:02,871 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:44:02,873 INFO repeater task os75nb_10pings starting 3.4 seconds late 2015-08-17 15:44:03,059 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:44:23,115 INFO repeater task seapath_hcorrstats starting 3.6 seconds late 2015-08-17 15:44:24,218 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:44:24,219 INFO repeater task gyro2_hcorrstats starting 4.7 seconds late 2015-08-17 15:44:25,313 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:44:30,322 INFO repeater task os75nb_lastensq starting 0.3 seconds late 2015-08-17 15:44:32,334 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 15:44:32,334 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:44:20 2015-08-17 15:46:42,669 INFO repeater task os150nb_lastensq starting 3.2 seconds late 2015-08-17 15:46:43,366 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:46:43,367 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:46:43,367 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:46:43,368 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:49:23,782 INFO repeater task os150nb_10pings starting 4.3 seconds late 2015-08-17 15:49:23,979 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:49:23,979 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:49:23,980 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:49:23,980 INFO repeater task os150nb_quick starting 4.5 seconds late 2015-08-17 15:49:24,466 ERROR repeater task os150nb_quick returncode 2 2015-08-17 15:49:24,466 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-08-17 15:49:24,467 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-08-17 15:49:24,467 INFO repeater task os150nb_3dayplots starting 5.0 seconds late 2015-08-17 15:49:24,933 ERROR repeater task os150nb_3dayplots returncode 1 2015-08-17 15:49:24,933 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq 2015-08-17 15:49:24,934 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-08-17 15:49:24,934 INFO repeater task os150nb_tsstats starting 5.5 seconds late 2015-08-17 15:49:25,267 ERROR repeater task os150nb_tsstats returncode 1 2015-08-17 15:49:25,268 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq has no block directory 2015-08-17 15:49:25,268 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-08-17 15:49:25,269 INFO repeater task os75nb_10pings starting 5.8 seconds late 2015-08-17 15:49:25,461 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:49:25,461 INFO repeater task os75nb_quick starting 6.0 seconds late 2015-08-17 15:49:31,782 INFO repeater task os75nb_quick ended after 6.3 seconds 2015-08-17 15:49:31,783 INFO repeater task os75nb_3dayplots starting 12.3 seconds late 2015-08-17 15:49:46,075 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-08-17 15:49:46,075 INFO repeater task os75nb_3dayplots ended after 14.3 seconds 2015-08-17 15:49:46,076 INFO repeater task os75nb_tsstats starting 26.6 seconds late 2015-08-17 15:49:47,144 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:1073: RuntimeWarning: overflow encountered in true_divide result = self.f(da, db, *args, **kwargs) 2015-08-17 15:49:47,144 INFO repeater task os75nb_tsstats ended after 1.1 seconds 2015-08-17 15:49:47,145 INFO repeater task os150nb_beamplots starting 27.7 seconds late 2015-08-17 15:49:47,620 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:49:47,620 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:49:47,621 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 15:49:47,621 INFO repeater task os150nb_beamplots starting 28.1 seconds late 2015-08-17 15:49:48,080 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 15:49:48,080 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 15:49:48,081 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 15:49:48,081 INFO repeater task os75nb_beamplots starting 28.6 seconds late 2015-08-17 15:49:49,733 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:49:49,733 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 15:49:49,734 INFO repeater task os75nb_beamplots starting 30.3 seconds late 2015-08-17 15:49:51,429 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 15:49:51,429 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 15:49:51,430 INFO repeater task seapath_hcorrstats starting 31.9 seconds late 2015-08-17 15:49:52,484 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:49:52,484 INFO repeater task gyro2_hcorrstats starting 33.0 seconds late 2015-08-17 15:49:53,534 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-08-17 15:49:58,539 INFO repeater task os75nb_lastensq starting 28.5 seconds late 2015-08-17 15:50:00,411 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2015-08-17 15:50:00,411 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:49:20 2015-08-17 15:51:50,689 INFO repeater task os150nb_lastensq starting 1.2 seconds late 2015-08-17 15:51:51,383 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:51:51,383 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:51:51,384 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:51:51,384 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:54:21,779 INFO repeater task seapath_hcorrstats starting 2.3 seconds late 2015-08-17 15:54:22,866 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:54:22,867 INFO repeater task gyro2_hcorrstats starting 3.4 seconds late 2015-08-17 15:54:23,980 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:54:34,000 INFO repeater task os75nb_lastensq starting 4.0 seconds late 2015-08-17 15:54:35,883 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-08-17 15:54:35,883 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2015-08-17 15:54:35,884 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:54:20 2015-08-17 15:54:40,895 INFO repeater task os150nb_10pings starting 1.4 seconds late 2015-08-17 15:54:41,077 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 15:54:41,077 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 15:54:41,077 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 15:54:41,080 INFO repeater task os75nb_10pings starting 1.6 seconds late 2015-08-17 15:54:41,271 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 15:57:01,631 INFO repeater task os150nb_lastensq starting 2.2 seconds late 2015-08-17 15:57:02,322 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 15:57:02,323 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 15:57:02,323 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 15:57:02,323 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 15:59:22,698 INFO repeater task seapath_hcorrstats starting 3.2 seconds late 2015-08-17 15:59:23,788 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 15:59:23,789 INFO repeater task gyro2_hcorrstats starting 4.3 seconds late 2015-08-17 15:59:24,883 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 15:59:34,905 INFO repeater task os75nb_lastensq starting 4.9 seconds late 2015-08-17 15:59:36,914 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-08-17 15:59:36,915 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 15:59:36,915 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 15:59:20 2015-08-17 16:00:01,977 INFO repeater task os150nb_10pings starting 2.5 seconds late 2015-08-17 16:00:02,170 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 16:00:02,171 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 16:00:02,172 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 16:00:02,174 INFO repeater task os75nb_10pings starting 2.7 seconds late 2015-08-17 16:00:02,366 ERROR repeater task os75nb_10pings returncode 8 2015-08-17 16:00:02,366 INFO repeater task os75nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1473, in extract_raw i0 = ii[i0] * nbytes IndexError: index out of bounds 2015-08-17 16:00:02,366 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 16:02:12,703 INFO repeater task os150nb_lastensq starting 3.2 seconds late 2015-08-17 16:02:13,402 ERROR repeater task os150nb_lastensq returncode 16 2015-08-17 16:02:13,403 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-08-17 16:02:13,403 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-08-17 16:02:13,403 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201510S/proc/os150nb/load/wrote_ens_time 2015-08-17 16:04:23,741 INFO repeater task os150nb_quick starting 4.3 seconds late 2015-08-17 16:04:24,245 ERROR repeater task os150nb_quick returncode 2 2015-08-17 16:04:24,246 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-08-17 16:04:24,246 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-08-17 16:04:24,247 INFO repeater task os150nb_3dayplots starting 4.8 seconds late 2015-08-17 16:04:24,724 ERROR repeater task os150nb_3dayplots returncode 1 2015-08-17 16:04:24,725 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq 2015-08-17 16:04:24,725 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-08-17 16:04:24,725 INFO repeater task os150nb_tsstats starting 5.2 seconds late 2015-08-17 16:04:25,058 ERROR repeater task os150nb_tsstats returncode 1 2015-08-17 16:04:25,058 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201510S/proc/os150nb/adcpdb/a_skq has no block directory 2015-08-17 16:04:25,058 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-08-17 16:04:25,060 INFO repeater task os75nb_quick starting 5.6 seconds late 2015-08-17 16:04:31,289 INFO repeater task os75nb_quick ended after 6.2 seconds 2015-08-17 16:04:31,290 INFO repeater task os75nb_3dayplots starting 11.8 seconds late 2015-08-17 16:04:45,682 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-08-17 16:04:45,683 INFO repeater task os75nb_3dayplots ended after 14.4 seconds 2015-08-17 16:04:45,683 INFO repeater task os75nb_tsstats starting 26.2 seconds late 2015-08-17 16:04:46,665 INFO repeater task os75nb_tsstats output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:1073: RuntimeWarning: overflow encountered in true_divide result = self.f(da, db, *args, **kwargs) 2015-08-17 16:04:46,665 INFO repeater task os75nb_tsstats ended after 1.0 seconds 2015-08-17 16:04:46,666 INFO repeater task os150nb_beamplots starting 27.2 seconds late 2015-08-17 16:04:47,131 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 16:04:47,132 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 16:04:47,132 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 16:04:47,132 INFO repeater task os150nb_beamplots starting 27.7 seconds late 2015-08-17 16:04:47,604 ERROR repeater task os150nb_beamplots returncode 1 2015-08-17 16:04:47,604 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-08-17 16:04:47,604 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-08-17 16:04:47,605 INFO repeater task os75nb_beamplots starting 28.1 seconds late 2015-08-17 16:04:49,285 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 16:04:49,285 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 16:04:49,286 INFO repeater task os75nb_beamplots starting 29.8 seconds late 2015-08-17 16:04:50,980 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-08-17 16:04:50,981 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-08-17 16:04:50,982 INFO repeater task seapath_hcorrstats starting 31.5 seconds late 2015-08-17 16:04:52,081 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-08-17 16:04:52,082 INFO repeater task gyro2_hcorrstats starting 32.6 seconds late 2015-08-17 16:04:53,167 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-08-17 16:04:58,176 INFO repeater task os75nb_lastensq starting 28.2 seconds late 2015-08-17 16:05:00,148 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-08-17 16:05:00,148 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-08-17 16:05:00,149 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201510S/proc/os75nb/load/wrote_ens_time: 2015/08/17 16:04:20 2015-08-17 16:05:20,200 INFO repeater task os150nb_10pings starting 0.7 seconds late 2015-08-17 16:05:20,382 ERROR repeater task os150nb_10pings returncode 8 2015-08-17 16:05:20,382 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-08-17 16:05:20,383 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-08-17 16:05:20,385 INFO repeater task os75nb_10pings starting 0.9 seconds late 2015-08-17 16:05:20,579 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-08-17 16:07:20,891 INFO repeater task os150nb_lastensq starting 1.4 seconds late 2015-08-17 16:07:21,598 ERROR repeater task os150nb_lastensq returncode 16