2015-03-17 05:04:50,917 INFO repeater task os150nb_tsstats starting 4.7 seconds late 2015-03-17 05:04:51,260 ERROR repeater task os150nb_tsstats returncode 1 2015-03-17 05:04:51,260 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq has no block directory 2015-03-17 05:04:51,261 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-03-17 05:04:51,262 INFO repeater task os75bb_quick starting 5.0 seconds late 2015-03-17 05:04:53,966 INFO repeater task os75bb_quick ended after 2.7 seconds 2015-03-17 05:04:53,967 INFO repeater task os75bb_3dayplots starting 7.7 seconds late 2015-03-17 05:04:57,621 INFO repeater task os75bb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:04:57,621 INFO repeater task os75bb_3dayplots ended after 3.7 seconds 2015-03-17 05:04:57,621 INFO repeater task os75bb_tsstats starting 11.4 seconds late 2015-03-17 05:04:58,486 INFO repeater task os75bb_tsstats ended after 0.9 seconds 2015-03-17 05:04:58,487 INFO repeater task os75nb_lastensq starting 0.5 seconds late 2015-03-17 05:05:00,341 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:05:00,342 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2015-03-17 05:05:00,342 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:04:48 2015-03-17 05:05:00,343 INFO repeater task os75nb_quick starting 14.1 seconds late 2015-03-17 05:05:04,701 INFO repeater task os75nb_quick ended after 4.4 seconds 2015-03-17 05:05:04,702 INFO repeater task os75nb_3dayplots starting 18.4 seconds late 2015-03-17 05:05:09,592 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:05:09,593 INFO repeater task os75nb_3dayplots ended after 4.9 seconds 2015-03-17 05:05:09,593 INFO repeater task os75nb_tsstats starting 23.3 seconds late 2015-03-17 05:05:10,583 INFO repeater task os75nb_tsstats ended after 1.0 seconds 2015-03-17 05:05:10,583 INFO repeater task os150nb_beamplots starting 24.3 seconds late 2015-03-17 05:05:11,018 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:05:11,019 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:05:11,019 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-03-17 05:05:11,020 INFO repeater task os150nb_beamplots starting 24.8 seconds late 2015-03-17 05:05:11,486 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:05:11,487 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:05:11,487 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-03-17 05:05:11,488 INFO repeater task os75bb_beamplots starting 25.2 seconds late 2015-03-17 05:05:13,146 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:05:13,147 INFO repeater task os75bb_beamplots ended after 1.7 seconds 2015-03-17 05:05:13,147 INFO repeater task os75bb_beamplots starting 26.9 seconds late 2015-03-17 05:05:14,637 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:05:14,637 INFO repeater task os75bb_beamplots ended after 1.5 seconds 2015-03-17 05:05:14,638 INFO repeater task os75nb_beamplots starting 28.4 seconds late 2015-03-17 05:05:16,338 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:05:16,339 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-03-17 05:05:16,339 INFO repeater task os75nb_beamplots starting 30.1 seconds late 2015-03-17 05:05:17,964 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:05:17,964 INFO repeater task os75nb_beamplots ended after 1.6 seconds 2015-03-17 05:05:17,965 INFO repeater task seapath_hcorrstats starting 31.7 seconds late 2015-03-17 05:05:19,023 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:05:19,023 INFO repeater task gyro2_hcorrstats starting 32.7 seconds late 2015-03-17 05:05:20,152 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:05:25,157 INFO repeater task os150nb_lastensq starting 18.9 seconds late 2015-03-17 05:05:25,835 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:05:25,836 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:05:25,836 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:05:25,836 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:05:25,839 INFO repeater task os75bb_lastensq starting 27.8 seconds late 2015-03-17 05:05:27,794 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:05:27,795 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 05:05:27,795 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:04:48 2015-03-17 05:09:28,566 INFO repeater task os150nb_10pings starting 2.3 seconds late 2015-03-17 05:09:28,756 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:09:28,756 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:09:28,757 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:09:28,759 INFO repeater task os75bb_10pings starting 2.5 seconds late 2015-03-17 05:09:28,951 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:09:28,953 INFO repeater task os75nb_10pings starting 2.7 seconds late 2015-03-17 05:09:29,148 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:09:49,218 INFO repeater task seapath_hcorrstats starting 2.9 seconds late 2015-03-17 05:09:50,380 INFO repeater task seapath_hcorrstats ended after 1.2 seconds 2015-03-17 05:09:50,381 INFO repeater task gyro2_hcorrstats starting 4.1 seconds late 2015-03-17 05:09:51,462 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:10:01,486 INFO repeater task os75bb_lastensq starting 3.5 seconds late 2015-03-17 05:10:03,506 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:10:03,506 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 05:10:03,507 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:09:48 2015-03-17 05:10:03,509 INFO repeater task os75nb_lastensq starting 5.5 seconds late 2015-03-17 05:10:05,522 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:10:05,522 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:10:05,523 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:09:48 2015-03-17 05:10:20,568 INFO repeater task os150nb_lastensq starting 4.3 seconds late 2015-03-17 05:10:21,256 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:10:21,256 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:10:21,256 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:10:21,256 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:14:47,109 INFO repeater task os150nb_10pings starting 0.9 seconds late 2015-03-17 05:14:47,308 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:14:47,309 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:14:47,309 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:14:47,310 INFO repeater task os75bb_10pings starting 1.1 seconds late 2015-03-17 05:14:47,505 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:14:47,506 INFO repeater task os75nb_10pings starting 1.3 seconds late 2015-03-17 05:14:47,709 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:14:47,712 INFO repeater task seapath_hcorrstats starting 1.4 seconds late 2015-03-17 05:14:48,755 INFO repeater task seapath_hcorrstats ended after 1.0 seconds 2015-03-17 05:14:48,756 INFO repeater task gyro2_hcorrstats starting 2.5 seconds late 2015-03-17 05:14:49,848 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:14:59,875 INFO repeater task os75bb_lastensq starting 1.9 seconds late 2015-03-17 05:15:01,778 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:15:01,778 INFO repeater task os75bb_lastensq ended after 1.9 seconds 2015-03-17 05:15:01,779 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:14:48 2015-03-17 05:15:01,782 INFO repeater task os75nb_lastensq starting 3.8 seconds late 2015-03-17 05:15:03,785 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:15:03,785 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:15:03,786 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:14:48 2015-03-17 05:15:28,856 INFO repeater task os150nb_lastensq starting 2.6 seconds late 2015-03-17 05:15:29,529 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:15:29,529 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:15:29,530 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:15:29,530 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:19:50,374 INFO repeater task os150nb_quick starting 4.1 seconds late 2015-03-17 05:19:50,854 ERROR repeater task os150nb_quick returncode 2 2015-03-17 05:19:50,854 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-03-17 05:19:50,855 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-03-17 05:19:50,855 INFO repeater task os150nb_3dayplots starting 4.6 seconds late 2015-03-17 05:19:51,307 ERROR repeater task os150nb_3dayplots returncode 1 2015-03-17 05:19:51,308 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq 2015-03-17 05:19:51,308 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-03-17 05:19:51,309 INFO repeater task os150nb_tsstats starting 5.1 seconds late 2015-03-17 05:19:51,617 ERROR repeater task os150nb_tsstats returncode 1 2015-03-17 05:19:51,618 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq has no block directory 2015-03-17 05:19:51,618 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-03-17 05:19:51,619 INFO repeater task os75bb_quick starting 5.4 seconds late 2015-03-17 05:19:54,419 INFO repeater task os75bb_quick ended after 2.8 seconds 2015-03-17 05:19:54,420 INFO repeater task os75bb_3dayplots starting 8.2 seconds late 2015-03-17 05:19:58,393 INFO repeater task os75bb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:19:58,393 INFO repeater task os75bb_3dayplots ended after 4.0 seconds 2015-03-17 05:19:58,394 INFO repeater task os75bb_tsstats starting 12.1 seconds late 2015-03-17 05:19:59,208 INFO repeater task os75bb_tsstats ended after 0.8 seconds 2015-03-17 05:19:59,209 INFO repeater task os75nb_lastensq starting 1.2 seconds late 2015-03-17 05:20:01,211 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:20:01,212 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:20:01,212 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:19:48 2015-03-17 05:20:01,213 INFO repeater task os75nb_quick starting 15.0 seconds late 2015-03-17 05:20:05,676 INFO repeater task os75nb_quick ended after 4.5 seconds 2015-03-17 05:20:05,677 INFO repeater task os75nb_3dayplots starting 19.4 seconds late 2015-03-17 05:20:10,806 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:20:10,806 INFO repeater task os75nb_3dayplots ended after 5.1 seconds 2015-03-17 05:20:10,807 INFO repeater task os75nb_tsstats starting 24.5 seconds late 2015-03-17 05:20:11,757 INFO repeater task os75nb_tsstats ended after 1.0 seconds 2015-03-17 05:20:11,758 INFO repeater task os150nb_beamplots starting 25.5 seconds late 2015-03-17 05:20:12,192 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:20:12,192 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:20:12,192 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-03-17 05:20:12,193 INFO repeater task os150nb_beamplots starting 25.9 seconds late 2015-03-17 05:20:12,633 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:20:12,634 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:20:12,634 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-03-17 05:20:12,635 INFO repeater task os75bb_beamplots starting 26.4 seconds late 2015-03-17 05:20:14,270 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:20:14,271 INFO repeater task os75bb_beamplots ended after 1.6 seconds 2015-03-17 05:20:14,272 INFO repeater task os75bb_beamplots starting 28.0 seconds late 2015-03-17 05:20:15,877 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:20:15,878 INFO repeater task os75bb_beamplots ended after 1.6 seconds 2015-03-17 05:20:15,878 INFO repeater task os75nb_beamplots starting 29.6 seconds late 2015-03-17 05:20:17,511 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:20:17,512 INFO repeater task os75nb_beamplots ended after 1.6 seconds 2015-03-17 05:20:17,513 INFO repeater task os75nb_beamplots starting 31.3 seconds late 2015-03-17 05:20:18,995 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:20:18,996 INFO repeater task os75nb_beamplots ended after 1.5 seconds 2015-03-17 05:20:18,996 INFO repeater task seapath_hcorrstats starting 32.7 seconds late 2015-03-17 05:20:20,035 INFO repeater task seapath_hcorrstats ended after 1.0 seconds 2015-03-17 05:20:20,036 INFO repeater task gyro2_hcorrstats starting 33.8 seconds late 2015-03-17 05:20:21,109 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:20:26,114 INFO repeater task os150nb_10pings starting 19.9 seconds late 2015-03-17 05:20:26,316 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:20:26,316 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:20:26,317 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:20:26,319 INFO repeater task os75bb_lastensq starting 28.3 seconds late 2015-03-17 05:20:28,158 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:20:28,159 INFO repeater task os75bb_lastensq ended after 1.8 seconds 2015-03-17 05:20:28,159 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:19:48 2015-03-17 05:20:28,160 INFO repeater task os75bb_10pings starting 21.9 seconds late 2015-03-17 05:20:28,350 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:20:28,352 INFO repeater task os75nb_10pings starting 22.1 seconds late 2015-03-17 05:20:28,537 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:20:38,563 INFO repeater task os150nb_lastensq starting 2.3 seconds late 2015-03-17 05:20:39,254 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:20:39,254 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:20:39,254 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:20:39,254 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:24:50,069 INFO repeater task seapath_hcorrstats starting 3.8 seconds late 2015-03-17 05:24:51,177 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:24:51,178 INFO repeater task gyro2_hcorrstats starting 4.9 seconds late 2015-03-17 05:24:52,270 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:25:02,295 INFO repeater task os75bb_lastensq starting 4.3 seconds late 2015-03-17 05:25:04,293 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:25:04,294 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 05:25:04,294 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:24:48 2015-03-17 05:25:04,296 INFO repeater task os75nb_lastensq starting 6.3 seconds late 2015-03-17 05:25:06,328 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:25:06,328 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:25:06,328 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:24:48 2015-03-17 05:25:26,386 INFO repeater task os150nb_10pings starting 0.1 seconds late 2015-03-17 05:25:26,581 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:25:26,582 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:25:26,582 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:25:26,585 INFO repeater task os75bb_10pings starting 0.3 seconds late 2015-03-17 05:25:26,777 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:25:26,779 INFO repeater task os75nb_10pings starting 0.5 seconds late 2015-03-17 05:25:26,971 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:25:47,030 INFO repeater task os150nb_lastensq starting 0.8 seconds late 2015-03-17 05:25:47,740 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:25:47,740 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:25:47,741 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:25:47,741 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:29:48,522 INFO repeater task seapath_hcorrstats starting 2.2 seconds late 2015-03-17 05:29:49,659 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:29:49,660 INFO repeater task gyro2_hcorrstats starting 3.4 seconds late 2015-03-17 05:29:50,762 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:30:00,788 INFO repeater task os75bb_lastensq starting 2.8 seconds late 2015-03-17 05:30:02,777 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:30:02,778 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 05:30:02,778 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:29:48 2015-03-17 05:30:02,781 INFO repeater task os75nb_lastensq starting 4.8 seconds late 2015-03-17 05:30:04,785 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:30:04,785 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:30:04,785 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:29:48 2015-03-17 05:30:49,924 INFO repeater task os150nb_10pings starting 3.7 seconds late 2015-03-17 05:30:50,123 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:30:50,124 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:30:50,124 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:30:50,125 INFO repeater task os75bb_10pings starting 3.9 seconds late 2015-03-17 05:30:50,324 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:30:50,327 INFO repeater task os75nb_10pings starting 4.1 seconds late 2015-03-17 05:30:50,521 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:31:00,548 INFO repeater task os150nb_lastensq starting 4.3 seconds late 2015-03-17 05:31:01,212 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:31:01,212 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:31:01,213 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:31:01,213 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:34:46,943 INFO repeater task os150nb_quick starting 0.7 seconds late 2015-03-17 05:34:47,438 ERROR repeater task os150nb_quick returncode 2 2015-03-17 05:34:47,439 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-03-17 05:34:47,439 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-03-17 05:34:47,439 INFO repeater task os150nb_3dayplots starting 1.2 seconds late 2015-03-17 05:34:47,916 ERROR repeater task os150nb_3dayplots returncode 1 2015-03-17 05:34:47,916 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq 2015-03-17 05:34:47,916 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-03-17 05:34:47,917 INFO repeater task os150nb_tsstats starting 1.7 seconds late 2015-03-17 05:34:48,261 ERROR repeater task os150nb_tsstats returncode 1 2015-03-17 05:34:48,262 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq has no block directory 2015-03-17 05:34:48,262 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-03-17 05:34:48,264 INFO repeater task os75bb_quick starting 2.0 seconds late 2015-03-17 05:34:50,930 INFO repeater task os75bb_quick ended after 2.7 seconds 2015-03-17 05:34:50,931 INFO repeater task os75bb_3dayplots starting 4.7 seconds late 2015-03-17 05:34:54,872 INFO repeater task os75bb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:34:54,872 INFO repeater task os75bb_3dayplots ended after 3.9 seconds 2015-03-17 05:34:54,873 INFO repeater task os75bb_tsstats starting 8.6 seconds late 2015-03-17 05:34:55,737 INFO repeater task os75bb_tsstats ended after 0.9 seconds 2015-03-17 05:34:55,738 INFO repeater task os75nb_quick starting 9.5 seconds late 2015-03-17 05:35:00,084 INFO repeater task os75nb_quick ended after 4.3 seconds 2015-03-17 05:35:00,085 INFO repeater task os75nb_3dayplots starting 13.8 seconds late 2015-03-17 05:35:05,299 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:35:05,300 INFO repeater task os75nb_3dayplots ended after 5.2 seconds 2015-03-17 05:35:05,301 INFO repeater task os75nb_tsstats starting 19.0 seconds late 2015-03-17 05:35:06,248 INFO repeater task os75nb_tsstats ended after 0.9 seconds 2015-03-17 05:35:06,248 INFO repeater task os150nb_beamplots starting 20.0 seconds late 2015-03-17 05:35:06,728 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:35:06,729 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:35:06,729 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-03-17 05:35:06,730 INFO repeater task os150nb_beamplots starting 20.5 seconds late 2015-03-17 05:35:07,165 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:35:07,165 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:35:07,166 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-03-17 05:35:07,166 INFO repeater task os75bb_beamplots starting 20.9 seconds late 2015-03-17 05:35:08,826 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:35:08,826 INFO repeater task os75bb_beamplots ended after 1.7 seconds 2015-03-17 05:35:08,826 INFO repeater task os75bb_beamplots starting 22.6 seconds late 2015-03-17 05:35:10,359 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:35:10,359 INFO repeater task os75bb_beamplots ended after 1.5 seconds 2015-03-17 05:35:10,360 INFO repeater task os75nb_beamplots starting 24.1 seconds late 2015-03-17 05:35:11,911 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:35:11,911 INFO repeater task os75nb_beamplots ended after 1.6 seconds 2015-03-17 05:35:11,912 INFO repeater task os75nb_beamplots starting 25.7 seconds late 2015-03-17 05:35:13,524 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:35:13,524 INFO repeater task os75nb_beamplots ended after 1.6 seconds 2015-03-17 05:35:13,525 INFO repeater task seapath_hcorrstats starting 27.2 seconds late 2015-03-17 05:35:14,660 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:35:14,661 INFO repeater task gyro2_hcorrstats starting 28.4 seconds late 2015-03-17 05:35:15,755 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:35:20,762 INFO repeater task os75bb_lastensq starting 22.8 seconds late 2015-03-17 05:35:22,759 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:35:22,760 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 05:35:22,760 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:34:48 2015-03-17 05:35:22,762 INFO repeater task os75nb_lastensq starting 24.8 seconds late 2015-03-17 05:35:24,767 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:35:24,768 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:35:24,768 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:34:48 2015-03-17 05:36:09,909 INFO repeater task os150nb_lastensq starting 3.7 seconds late 2015-03-17 05:36:10,540 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:36:10,541 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:36:10,541 INFO repeater task os150nb_lastensq ended after 0.6 seconds 2015-03-17 05:36:10,541 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:36:10,542 INFO repeater task os150nb_10pings starting 4.3 seconds late 2015-03-17 05:36:10,734 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:36:10,734 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:36:10,735 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:36:10,736 INFO repeater task os75bb_10pings starting 4.5 seconds late 2015-03-17 05:36:10,933 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:36:10,937 INFO repeater task os75nb_10pings starting 4.7 seconds late 2015-03-17 05:36:11,138 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:39:46,824 INFO repeater task seapath_hcorrstats starting 0.5 seconds late 2015-03-17 05:39:47,954 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:39:47,956 INFO repeater task gyro2_hcorrstats starting 1.7 seconds late 2015-03-17 05:39:49,069 INFO repeater task gyro2_hcorrstats ended after 1.1 seconds 2015-03-17 05:39:59,094 INFO repeater task os75bb_lastensq starting 1.1 seconds late 2015-03-17 05:40:00,936 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:40:00,936 INFO repeater task os75bb_lastensq ended after 1.8 seconds 2015-03-17 05:40:00,937 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:39:48 2015-03-17 05:40:00,939 INFO repeater task os75nb_lastensq starting 2.9 seconds late 2015-03-17 05:40:02,961 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:40:02,962 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:40:02,962 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:39:48 2015-03-17 05:41:18,197 INFO repeater task os150nb_lastensq starting 1.9 seconds late 2015-03-17 05:41:18,896 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:41:18,896 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:41:18,896 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:41:18,897 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:41:28,924 INFO repeater task os150nb_10pings starting 2.7 seconds late 2015-03-17 05:41:29,122 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:41:29,122 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:41:29,122 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:41:29,124 INFO repeater task os75bb_10pings starting 2.9 seconds late 2015-03-17 05:41:29,319 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:41:29,322 INFO repeater task os75nb_10pings starting 3.1 seconds late 2015-03-17 05:41:29,517 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:44:50,153 INFO repeater task seapath_hcorrstats starting 3.9 seconds late 2015-03-17 05:44:51,261 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:44:51,263 INFO repeater task gyro2_hcorrstats starting 5.0 seconds late 2015-03-17 05:44:52,281 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-03-17 05:45:02,307 INFO repeater task os75bb_lastensq starting 4.3 seconds late 2015-03-17 05:45:04,145 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:45:04,146 INFO repeater task os75bb_lastensq ended after 1.8 seconds 2015-03-17 05:45:04,146 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:44:48 2015-03-17 05:45:04,150 INFO repeater task os75nb_lastensq starting 6.2 seconds late 2015-03-17 05:45:06,059 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:45:06,060 INFO repeater task os75nb_lastensq ended after 1.9 seconds 2015-03-17 05:45:06,061 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:44:48 2015-03-17 05:46:26,317 INFO repeater task os150nb_lastensq starting 0.1 seconds late 2015-03-17 05:46:27,019 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:46:27,019 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:46:27,020 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:46:27,020 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:46:47,080 INFO repeater task os150nb_10pings starting 0.8 seconds late 2015-03-17 05:46:47,278 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:46:47,278 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:46:47,278 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:46:47,281 INFO repeater task os75bb_10pings starting 1.0 seconds late 2015-03-17 05:46:47,473 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:46:47,475 INFO repeater task os75nb_10pings starting 1.2 seconds late 2015-03-17 05:46:47,669 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:49:48,250 INFO repeater task os150nb_quick starting 2.0 seconds late 2015-03-17 05:49:48,732 ERROR repeater task os150nb_quick returncode 2 2015-03-17 05:49:48,732 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-03-17 05:49:48,733 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-03-17 05:49:48,733 INFO repeater task os150nb_3dayplots starting 2.5 seconds late 2015-03-17 05:49:49,185 ERROR repeater task os150nb_3dayplots returncode 1 2015-03-17 05:49:49,186 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq 2015-03-17 05:49:49,186 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-03-17 05:49:49,187 INFO repeater task os150nb_tsstats starting 2.9 seconds late 2015-03-17 05:49:49,522 ERROR repeater task os150nb_tsstats returncode 1 2015-03-17 05:49:49,523 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq has no block directory 2015-03-17 05:49:49,523 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-03-17 05:49:49,525 INFO repeater task os75bb_quick starting 3.3 seconds late 2015-03-17 05:49:52,257 INFO repeater task os75bb_quick ended after 2.7 seconds 2015-03-17 05:49:52,258 INFO repeater task os75bb_3dayplots starting 6.0 seconds late 2015-03-17 05:49:56,192 INFO repeater task os75bb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:49:56,193 INFO repeater task os75bb_3dayplots ended after 3.9 seconds 2015-03-17 05:49:56,194 INFO repeater task os75bb_tsstats starting 9.9 seconds late 2015-03-17 05:49:56,999 INFO repeater task os75bb_tsstats ended after 0.8 seconds 2015-03-17 05:49:57,001 INFO repeater task os75nb_quick starting 10.7 seconds late 2015-03-17 05:50:01,430 INFO repeater task os75nb_quick ended after 4.4 seconds 2015-03-17 05:50:01,431 INFO repeater task os75nb_3dayplots starting 15.2 seconds late 2015-03-17 05:50:06,725 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 05:50:06,725 INFO repeater task os75nb_3dayplots ended after 5.3 seconds 2015-03-17 05:50:06,726 INFO repeater task os75nb_tsstats starting 20.5 seconds late 2015-03-17 05:50:07,665 INFO repeater task os75nb_tsstats ended after 0.9 seconds 2015-03-17 05:50:07,666 INFO repeater task os150nb_beamplots starting 21.4 seconds late 2015-03-17 05:50:08,124 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:50:08,124 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:50:08,125 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-03-17 05:50:08,125 INFO repeater task os150nb_beamplots starting 21.9 seconds late 2015-03-17 05:50:08,592 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 05:50:08,593 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 05:50:08,593 INFO repeater task os150nb_beamplots ended after 0.5 seconds 2015-03-17 05:50:08,594 INFO repeater task os75bb_beamplots starting 22.3 seconds late 2015-03-17 05:50:10,168 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:50:10,169 INFO repeater task os75bb_beamplots ended after 1.6 seconds 2015-03-17 05:50:10,169 INFO repeater task os75bb_beamplots starting 23.9 seconds late 2015-03-17 05:50:11,684 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:50:11,684 INFO repeater task os75bb_beamplots ended after 1.5 seconds 2015-03-17 05:50:11,684 INFO repeater task os75nb_beamplots starting 25.4 seconds late 2015-03-17 05:50:13,320 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:50:13,321 INFO repeater task os75nb_beamplots ended after 1.6 seconds 2015-03-17 05:50:13,322 INFO repeater task os75nb_beamplots starting 27.1 seconds late 2015-03-17 05:50:14,931 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 05:50:14,932 INFO repeater task os75nb_beamplots ended after 1.6 seconds 2015-03-17 05:50:14,933 INFO repeater task seapath_hcorrstats starting 28.7 seconds late 2015-03-17 05:50:15,959 INFO repeater task seapath_hcorrstats ended after 1.0 seconds 2015-03-17 05:50:15,960 INFO repeater task gyro2_hcorrstats starting 29.7 seconds late 2015-03-17 05:50:16,966 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-03-17 05:50:21,975 INFO repeater task os75bb_lastensq starting 24.0 seconds late 2015-03-17 05:50:23,997 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:50:23,997 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 05:50:23,997 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:49:48 2015-03-17 05:50:23,999 INFO repeater task os75nb_lastensq starting 26.0 seconds late 2015-03-17 05:50:25,835 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:50:25,836 INFO repeater task os75nb_lastensq ended after 1.8 seconds 2015-03-17 05:50:25,836 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:49:48 2015-03-17 05:51:41,060 INFO repeater task os150nb_lastensq starting 4.8 seconds late 2015-03-17 05:51:41,725 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:51:41,725 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:51:41,725 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:51:41,726 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:52:06,795 INFO repeater task os150nb_10pings starting 0.5 seconds late 2015-03-17 05:52:06,989 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:52:06,989 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:52:06,989 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:52:06,991 INFO repeater task os75bb_10pings starting 0.7 seconds late 2015-03-17 05:52:07,176 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:52:07,177 INFO repeater task os75nb_10pings starting 0.9 seconds late 2015-03-17 05:52:07,379 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:54:47,899 INFO repeater task seapath_hcorrstats starting 1.6 seconds late 2015-03-17 05:54:49,009 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:54:49,010 INFO repeater task gyro2_hcorrstats starting 2.7 seconds late 2015-03-17 05:54:50,020 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-03-17 05:55:00,045 INFO repeater task os75bb_lastensq starting 2.0 seconds late 2015-03-17 05:55:02,003 INFO repeater task os75bb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:55:02,004 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 05:55:02,004 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:54:48 2015-03-17 05:55:02,007 INFO repeater task os75nb_lastensq starting 4.0 seconds late 2015-03-17 05:55:03,999 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 05:55:03,999 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 05:55:03,999 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:54:48 2015-03-17 05:56:49,325 INFO repeater task os150nb_lastensq starting 3.1 seconds late 2015-03-17 05:56:50,024 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 05:56:50,024 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 05:56:50,025 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 05:56:50,025 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 05:57:30,147 INFO repeater task os150nb_10pings starting 3.9 seconds late 2015-03-17 05:57:30,342 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 05:57:30,343 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 05:57:30,343 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 05:57:30,346 INFO repeater task os75bb_10pings starting 4.1 seconds late 2015-03-17 05:57:30,544 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 05:57:30,546 INFO repeater task os75nb_10pings starting 4.3 seconds late 2015-03-17 05:57:30,737 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 05:59:51,196 INFO repeater task seapath_hcorrstats starting 4.9 seconds late 2015-03-17 05:59:52,318 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 05:59:52,319 INFO repeater task gyro2_hcorrstats starting 6.0 seconds late 2015-03-17 05:59:53,359 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-03-17 05:59:58,368 INFO repeater task os75bb_lastensq starting 0.4 seconds late 2015-03-17 06:00:00,363 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 06:00:00,363 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 05:59:48 2015-03-17 06:00:00,365 INFO repeater task os75nb_lastensq starting 2.4 seconds late 2015-03-17 06:00:02,348 INFO repeater task os75nb_lastensq output: /usr/lib/python2.7/dist-packages/numpy/ma/core.py:3847: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") 2015-03-17 06:00:02,348 INFO repeater task os75nb_lastensq ended after 2.0 seconds 2015-03-17 06:00:02,348 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 05:59:48 2015-03-17 06:01:57,701 INFO repeater task os150nb_lastensq starting 1.5 seconds late 2015-03-17 06:01:58,424 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 06:01:58,425 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 06:01:58,425 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 06:01:58,425 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 06:02:48,591 INFO repeater task os150nb_10pings starting 2.3 seconds late 2015-03-17 06:02:48,789 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 06:02:48,790 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 06:02:48,790 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 06:02:48,792 INFO repeater task os75bb_10pings starting 2.5 seconds late 2015-03-17 06:02:48,990 INFO repeater task os75bb_10pings ended after 0.2 seconds 2015-03-17 06:02:48,993 INFO repeater task os75nb_10pings starting 2.7 seconds late 2015-03-17 06:02:49,192 INFO repeater task os75nb_10pings ended after 0.2 seconds 2015-03-17 06:04:49,580 INFO repeater task os150nb_quick starting 3.3 seconds late 2015-03-17 06:04:50,067 ERROR repeater task os150nb_quick returncode 2 2015-03-17 06:04:50,067 INFO repeater task os150nb_quick output: Failure in: scanping Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 917, in run_calc Calc() File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 271, in __call__ gbinsonar= uhdas_cfg.gbinsonar) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range cannot run numpy scan Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1089, in quick_adcp proc.run_scanping_npy() #UHDAS data File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 935, in run_scanping_npy self.run_calc('scanping', **kw) File "/home/currents/programs/pycurrents/adcp/quick_npy.py", line 920, in run_calc raise quickFatalError('Q_npy.runcalc: %s failure ', calcname) quickFatalError: ('Q_npy.runcalc: %s failure ', 'scanping') running quick_adcp Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_quick.py", line 169, in quick_adcp(['--cntfile', cntfile_proc]) File "/home/currents/programs/pycurrents/adcp/quick_adcp.py", line 1104, in quick_adcp trddlist = proc.get_time_range(timefile, time_range_string) File "/home/currents/programs/pycurrents/adcp/quick_subs.py", line 147, in get_time_range TF = open(timefile,'r') IOError: [Errno 2] No such file or directory: 'scan/a_skq.scn' 2015-03-17 06:04:50,067 INFO repeater task os150nb_quick ended after 0.5 seconds 2015-03-17 06:04:50,068 INFO repeater task os150nb_3dayplots starting 3.8 seconds late 2015-03-17 06:04:50,531 ERROR repeater task os150nb_3dayplots returncode 1 2015-03-17 06:04:50,532 INFO repeater task os150nb_3dayplots output: cannot write codasdb data samples for daily_report Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 333, in save_data_sample_db(cid, '_cont', cruiseinfo.daily_dir, -1.2) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 133, in save_data_sample_db dinfo = get_dbinfo(cid, ndays) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: open_block_dir IN DATABASE: 1 CODAS ERROR: UNABLE_TO_OPEN ACCESSING: BLOCK_DIR_FILE FROM FUNCTION: DBOPEN IN DATABASE: 1 Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 340, in dinfo = get_dbinfo(cid) File "/home/currents/programs/uhdas/scripts/run_3dayplots_mpl.py", line 202, in get_dbinfo cid['top_plotbin'][cid['procdirname']]) File "/home/currents/programs/pycurrents/adcp/quick_codas.py", line 16, in binmaxdepth db = DB(dbname) File "_codas.pyx", line 450, in _codas.DB.__init__ (codas/src/_codas.c:5632) IOError: Can't open database /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq 2015-03-17 06:04:50,533 INFO repeater task os150nb_3dayplots ended after 0.5 seconds 2015-03-17 06:04:50,533 INFO repeater task os150nb_tsstats starting 4.3 seconds late 2015-03-17 06:04:50,869 ERROR repeater task os150nb_tsstats returncode 1 2015-03-17 06:04:50,869 INFO repeater task os150nb_tsstats output: Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_plot_tsstats.py", line 97, in data = get_data(dbname, ndays=ndays) File "/home/currents/programs/pycurrents/adcp/tseries_diffstats.py", line 46, in get_data alldata=get_profiles(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 262, in get_profiles dbname = dbname_from_path(dbname) File "/home/currents/programs/pycurrents/codas/tools.py", line 229, in dbname_from_path raise ValueError("path %s has no block directory" % path) ValueError: path /home/data/SKQ201504T_01/proc/os150nb/adcpdb/a_skq has no block directory 2015-03-17 06:04:50,870 INFO repeater task os150nb_tsstats ended after 0.3 seconds 2015-03-17 06:04:50,871 INFO repeater task os75bb_quick starting 4.6 seconds late 2015-03-17 06:04:53,588 INFO repeater task os75bb_quick ended after 2.7 seconds 2015-03-17 06:04:53,588 INFO repeater task os75bb_3dayplots starting 7.3 seconds late 2015-03-17 06:04:57,557 INFO repeater task os75bb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 06:04:57,558 INFO repeater task os75bb_3dayplots ended after 4.0 seconds 2015-03-17 06:04:57,558 INFO repeater task os75bb_tsstats starting 11.3 seconds late 2015-03-17 06:04:58,421 INFO repeater task os75bb_tsstats ended after 0.9 seconds 2015-03-17 06:04:58,423 INFO repeater task os75nb_lastensq starting 0.4 seconds late 2015-03-17 06:05:00,259 INFO repeater task os75nb_lastensq ended after 1.8 seconds 2015-03-17 06:05:00,259 INFO repeater task os75nb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75nb/load/wrote_ens_time: 2015/03/17 06:04:48 2015-03-17 06:05:00,260 INFO repeater task os75nb_quick starting 14.0 seconds late 2015-03-17 06:05:04,674 INFO repeater task os75nb_quick ended after 4.4 seconds 2015-03-17 06:05:04,675 INFO repeater task os75nb_3dayplots starting 18.4 seconds late 2015-03-17 06:05:10,005 INFO repeater task os75nb_3dayplots output: /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:319: RuntimeWarning: All-NaN slice encountered warnings.warn("All-NaN slice encountered", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/lib/nanfunctions.py:220: RuntimeWarning: All-NaN axis encountered warnings.warn("All-NaN axis encountered", RuntimeWarning) 2015-03-17 06:05:10,005 INFO repeater task os75nb_3dayplots ended after 5.3 seconds 2015-03-17 06:05:10,005 INFO repeater task os75nb_tsstats starting 23.7 seconds late 2015-03-17 06:05:10,955 INFO repeater task os75nb_tsstats ended after 1.0 seconds 2015-03-17 06:05:10,956 INFO repeater task os150nb_beamplots starting 24.7 seconds late 2015-03-17 06:05:11,400 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 06:05:11,400 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 06:05:11,400 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-03-17 06:05:11,401 INFO repeater task os150nb_beamplots starting 25.1 seconds late 2015-03-17 06:05:11,825 ERROR repeater task os150nb_beamplots returncode 1 2015-03-17 06:05:11,826 INFO repeater task os150nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/plot_beamdiagnostics.py", line 125, in savefigs=options.savefigs) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 298, in get_plot_recent data = self.read_data(minutes=minutes) File "/home/currents/programs/pycurrents/adcp/adcp_diagnostics.py", line 115, in read_data self.m=Multiread(self.lastfiles, self.sonar.model) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range 2015-03-17 06:05:11,826 INFO repeater task os150nb_beamplots ended after 0.4 seconds 2015-03-17 06:05:11,826 INFO repeater task os75bb_beamplots starting 25.6 seconds late 2015-03-17 06:05:13,488 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 06:05:13,489 INFO repeater task os75bb_beamplots ended after 1.7 seconds 2015-03-17 06:05:13,489 INFO repeater task os75bb_beamplots starting 27.2 seconds late 2015-03-17 06:05:15,101 INFO repeater task os75bb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 06:05:15,101 INFO repeater task os75bb_beamplots ended after 1.6 seconds 2015-03-17 06:05:15,102 INFO repeater task os75nb_beamplots starting 28.8 seconds late 2015-03-17 06:05:16,781 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 06:05:16,781 INFO repeater task os75nb_beamplots ended after 1.7 seconds 2015-03-17 06:05:16,782 INFO repeater task os75nb_beamplots starting 30.5 seconds late 2015-03-17 06:05:18,268 INFO repeater task os75nb_beamplots output: Starting procsetup scriptpath is /home/currents/programs/uhdas/scripts CURRENTS_REPO_PATH not found; assuming in-place installation programs_path is /home/currents/programs 2015-03-17 06:05:18,269 INFO repeater task os75nb_beamplots ended after 1.5 seconds 2015-03-17 06:05:18,269 INFO repeater task seapath_hcorrstats starting 32.0 seconds late 2015-03-17 06:05:19,400 INFO repeater task seapath_hcorrstats ended after 1.1 seconds 2015-03-17 06:05:19,400 INFO repeater task gyro2_hcorrstats starting 33.1 seconds late 2015-03-17 06:05:20,446 INFO repeater task gyro2_hcorrstats ended after 1.0 seconds 2015-03-17 06:05:25,453 INFO repeater task os75bb_lastensq starting 27.5 seconds late 2015-03-17 06:05:27,431 INFO repeater task os75bb_lastensq ended after 2.0 seconds 2015-03-17 06:05:27,431 INFO repeater task os75bb_lastensq: Time from /home/data/SKQ201504T_01/proc/os75bb/load/wrote_ens_time: 2015/03/17 06:04:48 2015-03-17 06:07:07,746 INFO repeater task os150nb_lastensq starting 1.5 seconds late 2015-03-17 06:07:08,444 ERROR repeater task os150nb_lastensq returncode 16 2015-03-17 06:07:08,445 INFO repeater task os150nb_lastensq output: Pingavg.read_inputs: no data available? Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 600, in run self.read_inputs() File "/home/currents/programs/pycurrents/adcp/pingavg.py", line 565, in read_inputs yearbase=self.yearbase) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1645, in __init__ if os.path.exists(_log_fnames[0]): IndexError: list index out of range In body of run_lastensq.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_lastensq.py", line 338, in cdict = {'beamangle': pavg.beam_angle, AttributeError: 'Pingavg' object has no attribute 'beam_angle' 2015-03-17 06:07:08,445 INFO repeater task os150nb_lastensq ended after 0.7 seconds 2015-03-17 06:07:08,445 WARNING repeater task os150nb_lastensq: Could not stat or read /home/data/SKQ201504T_01/proc/os150nb/load/wrote_ens_time 2015-03-17 06:08:08,641 INFO repeater task os150nb_10pings starting 2.4 seconds late 2015-03-17 06:08:08,839 ERROR repeater task os150nb_10pings returncode 8 2015-03-17 06:08:08,840 INFO repeater task os150nb_10pings output: In body of run_grab_lastpings.py Traceback (most recent call last): File "/home/currents/programs/uhdas/scripts/run_grab_lastpings.py", line 69, in data=extract_raw(infile, instname[:2], i0, i1, outfile=outfile, verbose=True) File "/home/currents/programs/pycurrents/adcp/rdiraw.py", line 1471, in extract_raw log.info("%s has %d profiles of %d bytes each" % (infile, rf.nprofs, nbytes)) TypeError: %d format: a number is required, not NoneType 2015-03-17 06:08:08,840 INFO repeater task os150nb_10pings ended after 0.2 seconds 2015-03-17 06:08:08,841 INFO repeater task os75bb_10pings starting 2.6 seconds late 2015-03-17 06:08:09,027 INFO repeater task os75bb_10pings ended after 0.2 seconds