2012-07-16 17:00:25,248 DEBUG root about to write control file parameters to --yearbase 2011 --cruisename RR1208 --configtype python --sonar nb150 --dbname a_rr --datatype uhdas --cfgpath /home/data/RR1208/proc/nb150/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 500 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2012-07-16 17:00:25,248 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d nb150 2012-07-16 17:00:25,249 DEBUG quick_adcp progdir = /home/currents/programs 2012-07-16 17:00:25,249 DEBUG quick_adcp binos = lnx64 2012-07-16 17:00:25,251 DEBUG quick_setup found cruise_info.hcorr (ashtech, adu, 0) 2012-07-16 17:00:25,251 INFO quick_adcp importing numpy 2012-07-16 17:00:25,267 INFO quick_adcp importing matplotlib 2012-07-16 17:00:25,447 DEBUG quick_mpl in Q_mpl 2012-07-16 17:00:25,447 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_filelist get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_guess_xducerxy run_guess_xducerxy_npy run_loaddb run_loadlta_npy run_loadping run_lstconfig run_lsthdg run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd_lta run_pybincmd_uhdas run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanlta_npy run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy run_xducerxy_npy scanping setflags smoothr timegrid timslip ubprint user_defined_headfunc write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2012-07-16 17:00:25,447 DEBUG quick_adcp cwd is /home/data/RR1208/proc/nb150 about to run these steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2012-07-16 17:00:25,448 DEBUG quick_adcp original fix file is a_rr.gps 2012-07-16 17:00:25,448 DEBUG quick_adcp smoothed nav file is a_rr_refsm.asc 2012-07-16 17:00:25,448 DEBUG quick_asect extracting matlab files for nb150, nb pings 2012-07-16 17:00:25,464 DEBUG quick_subs found 202 files using wildcard expansion from "/home/data/RR1208/raw/nb150/*.raw" 2012-07-16 17:00:25,464 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/RR1208/raw/nb150/rr2012_181_01222.raw ... 2012-07-16 17:00:25,464 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/RR1208/raw/nb150/rr2012_181_01222.raw ... 2012-07-16 17:00:25,465 DEBUG quick_adcp Mon Jul 16 17:00:25 2012 running quick_adcp.py as follows: --cntfile /home/data/RR1208/proc/nb150/nb150_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_rr dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375] firstdepth 21 gridnum 80 increment 5 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx64 binos lnx64 btrk_step 1 cfgpath /home/data/RR1208/proc/nb150/config cntfile /home/data/RR1208/proc/nb150/nb150_qpy.cnt commands None configtype python cruisename RR1208 data_def vmadcp.def datadir /home/data/RR1208/raw/nb150 datafile_glob *.raw datatype uhdas dbname a_rr dday_bailout None debug False diarystr diary quick_adcp.diary displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/RR1208/raw/nb150/rr2012_181_01222.raw', '/home/data/RR1208/raw/nb150/rr2012_181_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_181_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_181_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_181_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_181_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_181_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_181_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_181_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_181_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_181_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_181_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_182_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_182_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_182_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_182_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_182_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_182_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_182_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_182_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_182_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_182_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_182_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_182_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_183_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_183_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_183_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_183_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_183_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_183_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_183_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_183_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_183_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_183_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_183_68993.raw', '/home/data/RR1208/raw/nb150/rr2012_183_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_183_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_184_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_184_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_184_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_184_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_184_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_184_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_184_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_184_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_184_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_184_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_184_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_184_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_185_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_185_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_185_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_185_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_185_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_185_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_185_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_185_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_185_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_185_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_185_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_185_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_186_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_186_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_186_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_186_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_186_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_186_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_186_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_186_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_186_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_186_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_186_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_186_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_187_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_187_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_187_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_187_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_187_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_187_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_187_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_187_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_187_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_187_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_187_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_187_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_188_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_188_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_188_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_188_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_188_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_188_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_188_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_188_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_188_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_188_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_188_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_188_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_189_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_189_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_189_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_189_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_189_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_189_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_189_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_189_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_189_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_189_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_189_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_189_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_190_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_190_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_190_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_190_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_190_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_190_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_190_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_190_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_190_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_190_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_190_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_190_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_191_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_191_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_191_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_191_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_191_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_191_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_191_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_191_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_191_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_191_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_191_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_191_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_192_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_192_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_192_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_192_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_192_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_192_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_192_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_192_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_192_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_192_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_192_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_192_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_193_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_193_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_193_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_193_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_193_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_193_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_193_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_193_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_193_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_193_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_193_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_193_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_194_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_194_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_194_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_194_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_194_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_194_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_194_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_194_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_194_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_194_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_194_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_194_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_195_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_195_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_195_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_195_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_195_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_195_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_195_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_195_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_195_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_195_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_195_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_195_79222.raw', '/home/data/RR1208/raw/nb150/rr2012_196_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_196_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_196_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_196_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_196_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_196_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_196_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_196_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_196_57600.raw', '/home/data/RR1208/raw/nb150/rr2012_196_64800.raw', '/home/data/RR1208/raw/nb150/rr2012_196_72000.raw', '/home/data/RR1208/raw/nb150/rr2012_196_79200.raw', '/home/data/RR1208/raw/nb150/rr2012_197_00000.raw', '/home/data/RR1208/raw/nb150/rr2012_197_07200.raw', '/home/data/RR1208/raw/nb150/rr2012_197_14400.raw', '/home/data/RR1208/raw/nb150/rr2012_197_21600.raw', '/home/data/RR1208/raw/nb150/rr2012_197_28800.raw', '/home/data/RR1208/raw/nb150/rr2012_197_36000.raw', '/home/data/RR1208/raw/nb150/rr2012_197_43200.raw', '/home/data/RR1208/raw/nb150/rr2012_197_50400.raw', '/home/data/RR1208/raw/nb150/rr2012_197_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 21 fixfile a_rr.gps frequency 150 gbin_style python gbindirbase /home/data/RR1208/gbin hcorr_inst ashtech help False hidedisplay True incremental True instname nb150 jitter 15 max_BLKprofiles 399 max_search_depth 500 maxrunsecs None min_filter_fraction 0.5 model nb nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_rr.gps overview False pgmin 50 ping_headcorr False pingtype nb post_headcorr None printformats png proc_engine python proc_yearbase 2011 progdir /home/currents/programs py_gbindirbase /home/data/RR1208/gbin quiet False rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_rr_refsm.asc sonar nb150 steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2011 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2012-07-16 17:00:25,465 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2012-07-16 17:00:25,466 DEBUG quick_run executing commands from /home/data/RR1208/proc/nb150/edit 2012-07-16 17:00:25,466 DEBUG quick_run setup.m exists. not replacing 2012-07-16 17:00:25,466 DEBUG quick_run asetup.m exists. not replacing 2012-07-16 17:00:25,466 DEBUG quick_run aflagit_setup.m exists. not replacing 2012-07-16 17:00:25,466 DEBUG quick_adcp about to run numpy scan, requiring python gbins 2012-07-16 17:00:25,466 DEBUG quick_npy Starting: scanping 2012-07-16 17:00:25,610 DEBUG quick_npy Ending: scanping 2012-07-16 17:00:25,611 DEBUG quick_subs start_end_time 2012/06/30 00:20:24 to 2012/06/30 00:30:34 2012-07-16 17:00:25,611 DEBUG quick_subs dd0: 546.014167 dd1: 546.021227 2012-07-16 17:00:25,612 DEBUG quick_adcp in quick_adcp.py: after scan; look for database times in /home/data/RR1208/proc/nb150 2012-07-16 17:00:25,612 DEBUG quick_adcp looking for database with adcpdb/a_rr*.blk 2012-07-16 17:00:25,612 DEBUG quick_adcp database found: listing blocks 2012-07-16 17:00:25,612 DEBUG quick_subs removing a_rrdir.blk 2012-07-16 17:00:25,613 DEBUG quick_subs about to run mkblkdir 2012-07-16 17:00:25,613 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-07-16 17:00:25,613 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-07-16 17:00:25,623 DEBUG quick_subs database passes. 2012-07-16 17:00:25,624 DEBUG quick_subs start_end_time 2012/06/30 00:25:23 to 2012/07/16 16:40:21 2012-07-16 17:00:25,624 DEBUG quick_subs dd0: 546.017627 dd1: 562.694687 2012-07-16 17:00:25,624 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2012-07-16 17:00:25,624 DEBUG quick_adcp origdb_time_range is 2012/06/30 00:25:23 to 2012/07/16 16:40:21 2012-07-16 17:00:25,624 DEBUG quick_adcp (546.017627 to 562.694687) 2012-07-16 17:00:25,624 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2012-07-16 17:00:25,624 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:25,625 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/load 2012-07-16 17:00:25,625 DEBUG quick_setup running python command "run_pingavg_npy" 2012-07-16 17:00:25,625 DEBUG quick_npy Starting: pingavg 2012-07-16 17:00:25,626 DEBUG quick_npy singleping editing parameters: 2012-07-16 17:00:25,627 DEBUG quick_npy bigtarget_mab_window : 11 2012-07-16 17:00:25,627 DEBUG quick_npy rl_endbin : 20 2012-07-16 17:00:25,627 DEBUG quick_npy max_search_depth : 500 2012-07-16 17:00:25,627 DEBUG quick_npy cor_cutoff : 120 2012-07-16 17:00:25,627 DEBUG quick_npy ampfilt : 40 2012-07-16 17:00:25,627 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2012-07-16 17:00:25,627 DEBUG quick_npy rl_startbin : 2 2012-07-16 17:00:25,627 DEBUG quick_npy ecutoff : 0.500000 2012-07-16 17:00:25,627 DEBUG quick_npy refavg_valcutoff : 1 2012-07-16 17:00:25,627 DEBUG quick_npy weakprof_percent : 30 2012-07-16 17:00:25,627 DEBUG quick_npy bigtarget_ampthresh : 55 2012-07-16 17:00:25,634 INFO pingavg Pingavg.run for time range 562.666670 to 562.705304 2012-07-16 17:00:25,638 DEBUG pingavg Chunk 1 of 1, 562.666670 to 562.705304 2012-07-16 17:00:25,638 DEBUG pingavg Nothing written 2012-07-16 17:00:25,639 DEBUG quick_npy wrote 0 averages 2012-07-16 17:00:25,639 DEBUG quick_npy Ending: pingavg 2012-07-16 17:00:25,640 DEBUG quick_subs in del_overlapping 2012-07-16 17:00:25,640 DEBUG quick_subs lastblock: 2012-07-16 17:00:25,640 DEBUG quick_subs 17 2012-07-16 17:00:25,640 DEBUG quick_subs lastcmd: 2012-07-16 17:00:25,640 DEBUG quick_subs 17 2012-07-16 17:00:25,640 DEBUG quick_subs delblks: 2012-07-16 17:00:25,640 DEBUG quick_subs [17] 2012-07-16 17:00:25,640 DEBUG quick_subs loadblks: 2012-07-16 17:00:25,640 DEBUG quick_subs [17] 2012-07-16 17:00:25,641 DEBUG quick_subs about to run mkblkdir 2012-07-16 17:00:25,641 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-07-16 17:00:25,641 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-07-16 17:00:25,650 DEBUG quick_subs database passes. 2012-07-16 17:00:25,651 DEBUG quick_subs start_end_time 2012/06/30 00:25:23 to 2012/07/16 16:20:22 2012-07-16 17:00:25,651 DEBUG quick_subs dd0: 546.017627 dd1: 562.680810 2012-07-16 17:00:25,651 DEBUG quick_run [17] 2012-07-16 17:00:25,651 DEBUG quick_run cmdlist 2012-07-16 17:00:25,651 DEBUG quick_run ['./ens_blk017.cmd'] 2012-07-16 17:00:25,652 INFO quick_run Warning: 1 files will be loaded; 17 already exist 2012-07-16 17:00:25,652 INFO quick_run Mon Jul 16 17:00:25 2012 2012-07-16 17:00:25,652 INFO quick_run about to load uhdas files 2012-07-16 17:00:25,652 INFO quick_run /home/data/RR1208/raw/nb150/rr2012_181_01222.raw /home/data/RR1208/raw/nb150/rr2012_181_07200.raw /home/data/RR1208/raw/nb150/rr2012_181_14400.raw /home/data/RR1208/raw/nb150/rr2012_181_21600.raw /home/data/RR1208/raw/nb150/rr2012_181_28800.raw /home/data/RR1208/raw/nb150/rr2012_181_36000.raw /home/data/RR1208/raw/nb150/rr2012_181_43200.raw /home/data/RR1208/raw/nb150/rr2012_181_50400.raw /home/data/RR1208/raw/nb150/rr2012_181_57600.raw /home/data/RR1208/raw/nb150/rr2012_181_64800.raw /home/data/RR1208/raw/nb150/rr2012_181_72000.raw /home/data/RR1208/raw/nb150/rr2012_181_79200.raw /home/data/RR1208/raw/nb150/rr2012_182_00000.raw /home/data/RR1208/raw/nb150/rr2012_182_07200.raw /home/data/RR1208/raw/nb150/rr2012_182_14400.raw /home/data/RR1208/raw/nb150/rr2012_182_21600.raw /home/data/RR1208/raw/nb150/rr2012_182_28800.raw /home/data/RR1208/raw/nb150/rr2012_182_36000.raw /home/data/RR1208/raw/nb150/rr2012_182_43200.raw /home/data/RR1208/raw/nb150/rr2012_182_50400.raw /home/data/RR1208/raw/nb150/rr2012_182_57600.raw /home/data/RR1208/raw/nb150/rr2012_182_64800.raw /home/data/RR1208/raw/nb150/rr2012_182_72000.raw /home/data/RR1208/raw/nb150/rr2012_182_79200.raw /home/data/RR1208/raw/nb150/rr2012_183_00000.raw /home/data/RR1208/raw/nb150/rr2012_183_07200.raw /home/data/RR1208/raw/nb150/rr2012_183_14400.raw /home/data/RR1208/raw/nb150/rr2012_183_21600.raw /home/data/RR1208/raw/nb150/rr2012_183_28800.raw /home/data/RR1208/raw/nb150/rr2012_183_36000.raw /home/data/RR1208/raw/nb150/rr2012_183_43200.raw /home/data/RR1208/raw/nb150/rr2012_183_50400.raw /home/data/RR1208/raw/nb150/rr2012_183_57600.raw /home/data/RR1208/raw/nb150/rr2012_183_64800.raw /home/data/RR1208/raw/nb150/rr2012_183_68993.raw /home/data/RR1208/raw/nb150/rr2012_183_72000.raw /home/data/RR1208/raw/nb150/rr2012_183_79200.raw /home/data/RR1208/raw/nb150/rr2012_184_00000.raw /home/data/RR1208/raw/nb150/rr2012_184_07200.raw /home/data/RR1208/raw/nb150/rr2012_184_14400.raw /home/data/RR1208/raw/nb150/rr2012_184_21600.raw /home/data/RR1208/raw/nb150/rr2012_184_28800.raw /home/data/RR1208/raw/nb150/rr2012_184_36000.raw /home/data/RR1208/raw/nb150/rr2012_184_43200.raw /home/data/RR1208/raw/nb150/rr2012_184_50400.raw /home/data/RR1208/raw/nb150/rr2012_184_57600.raw /home/data/RR1208/raw/nb150/rr2012_184_64800.raw /home/data/RR1208/raw/nb150/rr2012_184_72000.raw /home/data/RR1208/raw/nb150/rr2012_184_79200.raw /home/data/RR1208/raw/nb150/rr2012_185_00000.raw /home/data/RR1208/raw/nb150/rr2012_185_07200.raw /home/data/RR1208/raw/nb150/rr2012_185_14400.raw /home/data/RR1208/raw/nb150/rr2012_185_21600.raw /home/data/RR1208/raw/nb150/rr2012_185_28800.raw /home/data/RR1208/raw/nb150/rr2012_185_36000.raw /home/data/RR1208/raw/nb150/rr2012_185_43200.raw /home/data/RR1208/raw/nb150/rr2012_185_50400.raw /home/data/RR1208/raw/nb150/rr2012_185_57600.raw /home/data/RR1208/raw/nb150/rr2012_185_64800.raw /home/data/RR1208/raw/nb150/rr2012_185_72000.raw /home/data/RR1208/raw/nb150/rr2012_185_79200.raw /home/data/RR1208/raw/nb150/rr2012_186_00000.raw /home/data/RR1208/raw/nb150/rr2012_186_07200.raw /home/data/RR1208/raw/nb150/rr2012_186_14400.raw /home/data/RR1208/raw/nb150/rr2012_186_21600.raw /home/data/RR1208/raw/nb150/rr2012_186_28800.raw /home/data/RR1208/raw/nb150/rr2012_186_36000.raw /home/data/RR1208/raw/nb150/rr2012_186_43200.raw /home/data/RR1208/raw/nb150/rr2012_186_50400.raw /home/data/RR1208/raw/nb150/rr2012_186_57600.raw /home/data/RR1208/raw/nb150/rr2012_186_64800.raw /home/data/RR1208/raw/nb150/rr2012_186_72000.raw /home/data/RR1208/raw/nb150/rr2012_186_79200.raw /home/data/RR1208/raw/nb150/rr2012_187_00000.raw /home/data/RR1208/raw/nb150/rr2012_187_07200.raw /home/data/RR1208/raw/nb150/rr2012_187_14400.raw /home/data/RR1208/raw/nb150/rr2012_187_21600.raw /home/data/RR1208/raw/nb150/rr2012_187_28800.raw /home/data/RR1208/raw/nb150/rr2012_187_36000.raw /home/data/RR1208/raw/nb150/rr2012_187_43200.raw /home/data/RR1208/raw/nb150/rr2012_187_50400.raw /home/data/RR1208/raw/nb150/rr2012_187_57600.raw /home/data/RR1208/raw/nb150/rr2012_187_64800.raw /home/data/RR1208/raw/nb150/rr2012_187_72000.raw /home/data/RR1208/raw/nb150/rr2012_187_79200.raw /home/data/RR1208/raw/nb150/rr2012_188_00000.raw /home/data/RR1208/raw/nb150/rr2012_188_07200.raw /home/data/RR1208/raw/nb150/rr2012_188_14400.raw /home/data/RR1208/raw/nb150/rr2012_188_21600.raw /home/data/RR1208/raw/nb150/rr2012_188_28800.raw /home/data/RR1208/raw/nb150/rr2012_188_36000.raw /home/data/RR1208/raw/nb150/rr2012_188_43200.raw /home/data/RR1208/raw/nb150/rr2012_188_50400.raw /home/data/RR1208/raw/nb150/rr2012_188_57600.raw /home/data/RR1208/raw/nb150/rr2012_188_64800.raw /home/data/RR1208/raw/nb150/rr2012_188_72000.raw /home/data/RR1208/raw/nb150/rr2012_188_79200.raw /home/data/RR1208/raw/nb150/rr2012_189_00000.raw /home/data/RR1208/raw/nb150/rr2012_189_07200.raw /home/data/RR1208/raw/nb150/rr2012_189_14400.raw /home/data/RR1208/raw/nb150/rr2012_189_21600.raw /home/data/RR1208/raw/nb150/rr2012_189_28800.raw /home/data/RR1208/raw/nb150/rr2012_189_36000.raw /home/data/RR1208/raw/nb150/rr2012_189_43200.raw /home/data/RR1208/raw/nb150/rr2012_189_50400.raw /home/data/RR1208/raw/nb150/rr2012_189_57600.raw /home/data/RR1208/raw/nb150/rr2012_189_64800.raw /home/data/RR1208/raw/nb150/rr2012_189_72000.raw /home/data/RR1208/raw/nb150/rr2012_189_79200.raw /home/data/RR1208/raw/nb150/rr2012_190_00000.raw /home/data/RR1208/raw/nb150/rr2012_190_07200.raw /home/data/RR1208/raw/nb150/rr2012_190_14400.raw /home/data/RR1208/raw/nb150/rr2012_190_21600.raw /home/data/RR1208/raw/nb150/rr2012_190_28800.raw /home/data/RR1208/raw/nb150/rr2012_190_36000.raw /home/data/RR1208/raw/nb150/rr2012_190_43200.raw /home/data/RR1208/raw/nb150/rr2012_190_50400.raw /home/data/RR1208/raw/nb150/rr2012_190_57600.raw /home/data/RR1208/raw/nb150/rr2012_190_64800.raw /home/data/RR1208/raw/nb150/rr2012_190_72000.raw /home/data/RR1208/raw/nb150/rr2012_190_79200.raw /home/data/RR1208/raw/nb150/rr2012_191_00000.raw /home/data/RR1208/raw/nb150/rr2012_191_07200.raw /home/data/RR1208/raw/nb150/rr2012_191_14400.raw /home/data/RR1208/raw/nb150/rr2012_191_21600.raw /home/data/RR1208/raw/nb150/rr2012_191_28800.raw /home/data/RR1208/raw/nb150/rr2012_191_36000.raw /home/data/RR1208/raw/nb150/rr2012_191_43200.raw /home/data/RR1208/raw/nb150/rr2012_191_50400.raw /home/data/RR1208/raw/nb150/rr2012_191_57600.raw /home/data/RR1208/raw/nb150/rr2012_191_64800.raw /home/data/RR1208/raw/nb150/rr2012_191_72000.raw /home/data/RR1208/raw/nb150/rr2012_191_79200.raw /home/data/RR1208/raw/nb150/rr2012_192_00000.raw /home/data/RR1208/raw/nb150/rr2012_192_07200.raw /home/data/RR1208/raw/nb150/rr2012_192_14400.raw /home/data/RR1208/raw/nb150/rr2012_192_21600.raw /home/data/RR1208/raw/nb150/rr2012_192_28800.raw /home/data/RR1208/raw/nb150/rr2012_192_36000.raw /home/data/RR1208/raw/nb150/rr2012_192_43200.raw /home/data/RR1208/raw/nb150/rr2012_192_50400.raw /home/data/RR1208/raw/nb150/rr2012_192_57600.raw /home/data/RR1208/raw/nb150/rr2012_192_64800.raw /home/data/RR1208/raw/nb150/rr2012_192_72000.raw /home/data/RR1208/raw/nb150/rr2012_192_79200.raw /home/data/RR1208/raw/nb150/rr2012_193_00000.raw /home/data/RR1208/raw/nb150/rr2012_193_07200.raw /home/data/RR1208/raw/nb150/rr2012_193_14400.raw /home/data/RR1208/raw/nb150/rr2012_193_21600.raw /home/data/RR1208/raw/nb150/rr2012_193_28800.raw /home/data/RR1208/raw/nb150/rr2012_193_36000.raw /home/data/RR1208/raw/nb150/rr2012_193_43200.raw /home/data/RR1208/raw/nb150/rr2012_193_50400.raw /home/data/RR1208/raw/nb150/rr2012_193_57600.raw /home/data/RR1208/raw/nb150/rr2012_193_64800.raw /home/data/RR1208/raw/nb150/rr2012_193_72000.raw /home/data/RR1208/raw/nb150/rr2012_193_79200.raw /home/data/RR1208/raw/nb150/rr2012_194_00000.raw /home/data/RR1208/raw/nb150/rr2012_194_07200.raw /home/data/RR1208/raw/nb150/rr2012_194_14400.raw /home/data/RR1208/raw/nb150/rr2012_194_21600.raw /home/data/RR1208/raw/nb150/rr2012_194_28800.raw /home/data/RR1208/raw/nb150/rr2012_194_36000.raw /home/data/RR1208/raw/nb150/rr2012_194_43200.raw /home/data/RR1208/raw/nb150/rr2012_194_50400.raw /home/data/RR1208/raw/nb150/rr2012_194_57600.raw /home/data/RR1208/raw/nb150/rr2012_194_64800.raw /home/data/RR1208/raw/nb150/rr2012_194_72000.raw /home/data/RR1208/raw/nb150/rr2012_194_79200.raw /home/data/RR1208/raw/nb150/rr2012_195_00000.raw /home/data/RR1208/raw/nb150/rr2012_195_07200.raw /home/data/RR1208/raw/nb150/rr2012_195_14400.raw /home/data/RR1208/raw/nb150/rr2012_195_21600.raw /home/data/RR1208/raw/nb150/rr2012_195_28800.raw /home/data/RR1208/raw/nb150/rr2012_195_36000.raw /home/data/RR1208/raw/nb150/rr2012_195_43200.raw /home/data/RR1208/raw/nb150/rr2012_195_50400.raw /home/data/RR1208/raw/nb150/rr2012_195_57600.raw /home/data/RR1208/raw/nb150/rr2012_195_64800.raw /home/data/RR1208/raw/nb150/rr2012_195_72000.raw /home/data/RR1208/raw/nb150/rr2012_195_79222.raw /home/data/RR1208/raw/nb150/rr2012_196_00000.raw /home/data/RR1208/raw/nb150/rr2012_196_07200.raw /home/data/RR1208/raw/nb150/rr2012_196_14400.raw /home/data/RR1208/raw/nb150/rr2012_196_21600.raw /home/data/RR1208/raw/nb150/rr2012_196_28800.raw /home/data/RR1208/raw/nb150/rr2012_196_36000.raw /home/data/RR1208/raw/nb150/rr2012_196_43200.raw /home/data/RR1208/raw/nb150/rr2012_196_50400.raw /home/data/RR1208/raw/nb150/rr2012_196_57600.raw /home/data/RR1208/raw/nb150/rr2012_196_64800.raw /home/data/RR1208/raw/nb150/rr2012_196_72000.raw /home/data/RR1208/raw/nb150/rr2012_196_79200.raw /home/data/RR1208/raw/nb150/rr2012_197_00000.raw /home/data/RR1208/raw/nb150/rr2012_197_07200.raw /home/data/RR1208/raw/nb150/rr2012_197_14400.raw /home/data/RR1208/raw/nb150/rr2012_197_21600.raw /home/data/RR1208/raw/nb150/rr2012_197_28800.raw /home/data/RR1208/raw/nb150/rr2012_197_36000.raw /home/data/RR1208/raw/nb150/rr2012_197_43200.raw /home/data/RR1208/raw/nb150/rr2012_197_50400.raw /home/data/RR1208/raw/nb150/rr2012_197_57600.raw 2012-07-16 17:00:25,652 DEBUG quick_setup load/ldcodas.tmp exists 2012-07-16 17:00:25,652 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:25,652 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/load 2012-07-16 17:00:25,652 DEBUG quick_setup running python command "ldcodas" 2012-07-16 17:00:25,652 DEBUG quick_subs filling "thisload" timerange 2012-07-16 17:00:25,653 DEBUG quick_subs in ldcodas 2012-07-16 17:00:25,653 DEBUG quick_subs cmdlist: 2012-07-16 17:00:25,653 DEBUG quick_subs ['./ens_blk017.cmd'] 2012-07-16 17:00:25,653 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_rr DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk017.cmd 2012-07-16 17:00:25,653 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/ldcodas ldcodas.tmp 2012-07-16 17:00:25,669 DEBUG quick_subs removing a_rrdir.blk 2012-07-16 17:00:25,669 DEBUG quick_subs about to run mkblkdir 2012-07-16 17:00:25,669 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-07-16 17:00:25,669 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-07-16 17:00:25,680 DEBUG quick_subs database passes. 2012-07-16 17:00:25,680 DEBUG quick_subs start_end_time 2012/06/30 00:25:23 to 2012/07/16 16:55:21 2012-07-16 17:00:25,680 DEBUG quick_subs dd0: 546.017627 dd1: 562.705104 2012-07-16 17:00:25,680 INFO quick_adcp --------------------- 2012-07-16 17:00:25,681 INFO quick_adcp loaded_time_range is 2012/06/30 00:25:23 to 2012/07/16 16:55:21 2012-07-16 17:00:25,681 INFO quick_adcp (546.017627 to 562.705104) 2012-07-16 17:00:25,681 INFO quick_adcp origdb_time_range is 2012/06/30 00:25:23 to 2012/07/16 16:40:21 2012-07-16 17:00:25,681 INFO quick_adcp (546.017627 to 562.694687) 2012-07-16 17:00:25,681 INFO quick_adcp thisload_time_range is 2012/07/16 16:25:21 to 2012/07/16 16:55:21 2012-07-16 17:00:25,681 INFO quick_adcp (562.684271 to 562.684271) 2012-07-16 17:00:25,681 INFO quick_adcp --------------------- 2012-07-16 17:00:25,681 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:25,681 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/adcpdb 2012-07-16 17:00:25,681 DEBUG quick_setup running python command "lst_conf" 2012-07-16 17:00:25,682 DEBUG quick_subs dbname: a_rr output: a_rr.cnh time_ranges: all 2012-07-16 17:00:25,682 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_conf lst_conf.tmp 2012-07-16 17:00:28,260 DEBUG quick_setup found (in edit/asetup.m): 2012-07-16 17:00:28,268 DEBUG quick_setup config.beamangle is 30 2012-07-16 17:00:28,268 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2012-07-16 17:00:28,268 DEBUG quick_run ------------ step 4: run setflags ------------- 2012-07-16 17:00:28,268 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:28,268 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/edit 2012-07-16 17:00:28,268 DEBUG quick_setup running python command "setflags" 2012-07-16 17:00:28,268 DEBUG quick_subs dbname: ../adcpdb/a_rr pg_min: 50 set_range_bit time_ranges: all 2012-07-16 17:00:28,268 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2012-07-16 17:00:28,383 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2012-07-16 17:00:28,383 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:28,383 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:28,383 DEBUG quick_setup running python command "catnav" 2012-07-16 17:00:28,385 DEBUG quick_run ------------ step 6: list heading ------------- 2012-07-16 17:00:28,386 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2012-07-16 17:00:28,386 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:28,386 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/cal/rotate 2012-07-16 17:00:28,386 DEBUG quick_setup running python command "lst_hdg" 2012-07-16 17:00:28,386 DEBUG quick_subs dbname: ../../adcpdb/a_rr output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2012-07-16 17:00:28,386 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_hdg lst_hdg.tmp 2012-07-16 17:00:28,473 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2012-07-16 17:00:28,473 DEBUG quick_run hcorr_inst is ashtech 2012-07-16 17:00:28,473 DEBUG quick_mpl Starting plot: hcorr 2012-07-16 17:00:28,558 DEBUG quick_mplplots found 16.687485 days of data 2012-07-16 17:00:28,558 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2012-07-16 17:00:28,558 DEBUG quick_mplplots printing 5 pages 2012-07-16 17:00:29,151 DEBUG quick_mpl Ending plot: hcorr 2012-07-16 17:00:29,152 DEBUG quick_run ------------ step 7: rotate ------------- 2012-07-16 17:00:29,152 DEBUG quick_setup cal/rotate/norotate.tmp exists 2012-07-16 17:00:29,152 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:29,152 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/cal/rotate 2012-07-16 17:00:29,152 DEBUG quick_setup running python command "norotate" 2012-07-16 17:00:29,152 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. DB_NAME: ../../adcpdb/a_rr LOG_FILE: rotate.log TIME_RANGE: 2012/06/30 00:25:23 to 2012/07/16 16:55:21 OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2012-07-16 17:00:29,152 DEBUG quick_setup about to run echo "writing dummy rotate file" 2012-07-16 17:00:29,158 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2012-07-16 17:00:29,158 DEBUG quick_setup nav/as_nav.tmp exists 2012-07-16 17:00:29,158 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:29,158 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:29,158 DEBUG quick_setup running python command "as_nav" 2012-07-16 17:00:29,158 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/06/30 00:25:23 to 2012/07/16 16:55:21 /* the whole time range */ 2012-07-16 17:00:29,158 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-07-16 17:00:29,208 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2012-07-16 17:00:29,208 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:29,208 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:29,208 DEBUG quick_setup running python command "refabs" 2012-07-16 17:00:29,209 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.nav fix_file: a_rr.gps output: a_rr.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2012-07-16 17:00:29,209 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2012-07-16 17:00:29,244 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2012-07-16 17:00:29,244 DEBUG quick_setup nav/smoothr.tmp exists 2012-07-16 17:00:29,244 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:29,244 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:29,244 DEBUG quick_setup running python command "smoothr" 2012-07-16 17:00:29,244 DEBUG quick_subs reference_file: a_rr.nav refabs_output: a_rr.ref output: a_rr.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-07-16 17:00:29,245 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2012-07-16 17:00:29,422 DEBUG quick_adcp about to run numpy refsm 2012-07-16 17:00:29,422 DEBUG quick_npy Starting: refsm 2012-07-16 17:00:29,547 INFO nav dtmin = -0.50 dtmax = 0.50 2012-07-16 17:00:29,719 DEBUG quick_npy Ending: refsm 2012-07-16 17:00:29,719 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2012-07-16 17:00:29,719 DEBUG quick_setup nav/putnav.tmp exists 2012-07-16 17:00:29,719 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:29,719 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:29,719 DEBUG quick_setup running python command "putnav" 2012-07-16 17:00:29,720 DEBUG quick_subs dbname: ../adcpdb/a_rr position_file: a_rr_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2012-07-16 17:00:29,720 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2012-07-16 17:00:29,780 DEBUG quick_adcp plotting navigation 2012-07-16 17:00:29,780 DEBUG quick_mpl Starting plot: nav 2012-07-16 17:00:30,373 DEBUG quick_mpl Ending plot: nav 2012-07-16 17:00:30,373 DEBUG quick_mpl Starting plot: refl 2012-07-16 17:00:30,481 DEBUG quick_mplplots found 16.680546 days of data 2012-07-16 17:00:30,482 DEBUG quick_mplplots start day is 546.000000 2012-07-16 17:00:30,482 DEBUG quick_mplplots figures with 2.000000 days per page 2012-07-16 17:00:30,482 DEBUG quick_mplplots printing 9 pages 2012-07-16 17:00:30,482 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-07-16 17:00:30,482 INFO quick_mplplots startdd is 546.0 2012-07-16 17:00:30,482 INFO quick_mplplots dt is 2.0 2012-07-16 17:00:31,381 DEBUG quick_mpl Ending plot: refl 2012-07-16 17:00:31,382 DEBUG quick_run ------------ step 13: automatically find profile flags using python ------------- 2012-07-16 17:00:31,382 DEBUG quick_run find profile flags ------------ *** ------------- 2012-07-16 17:00:31,382 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:31,382 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/edit 2012-07-16 17:00:31,382 DEBUG quick_setup running python command "run_autoedit_npy" 2012-07-16 17:00:31,382 DEBUG quick_npy Starting: autoedit 2012-07-16 17:00:31,505 DEBUG pingedit no data found in ddrange [562.3842708333334, 562.68427083333336] 2012-07-16 17:00:31,506 ERROR pingedit no data available 2012-07-16 17:00:31,506 DEBUG quick_npy Ending: autoedit 2012-07-16 17:00:31,506 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2012-07-16 17:00:31,506 DEBUG quick_run starting in: /home/data/RR1208/proc/nb150 2012-07-16 17:00:31,506 DEBUG quick_run executing commands from: edit 2012-07-16 17:00:31,507 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/set_lgb ../adcpdb/a_rr 30 2012-07-16 17:00:31,516 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2012-07-16 17:00:31,554 DEBUG quick_run changing directories back to /home/data/RR1208/proc/nb150 2012-07-16 17:00:31,554 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2012-07-16 17:00:31,554 DEBUG quick_setup nav/as_nav.tmp exists 2012-07-16 17:00:31,554 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:31,554 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:31,554 DEBUG quick_setup running python command "as_nav" 2012-07-16 17:00:31,554 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/06/30 00:25:23 to 2012/07/16 16:55:21 /* the whole time range */ 2012-07-16 17:00:31,555 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-07-16 17:00:31,607 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2012-07-16 17:00:31,607 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:31,607 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:31,608 DEBUG quick_setup running python command "refabs" 2012-07-16 17:00:31,608 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.nav fix_file: a_rr.gps output: a_rr.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2012-07-16 17:00:31,608 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2012-07-16 17:00:31,645 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2012-07-16 17:00:31,646 DEBUG quick_setup nav/smoothr.tmp exists 2012-07-16 17:00:31,646 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:31,646 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:31,646 DEBUG quick_setup running python command "smoothr" 2012-07-16 17:00:31,646 DEBUG quick_subs reference_file: a_rr.nav refabs_output: a_rr.ref output: a_rr.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-07-16 17:00:31,646 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2012-07-16 17:00:31,848 DEBUG quick_adcp running refsm 2012-07-16 17:00:31,849 DEBUG quick_npy Starting: refsm 2012-07-16 17:00:31,999 INFO nav dtmin = -0.50 dtmax = 0.50 2012-07-16 17:00:32,480 DEBUG quick_npy Ending: refsm 2012-07-16 17:00:32,480 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2012-07-16 17:00:32,480 DEBUG quick_setup nav/putnav.tmp exists 2012-07-16 17:00:32,480 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:32,480 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:32,483 DEBUG quick_setup running python command "putnav" 2012-07-16 17:00:32,484 DEBUG quick_subs dbname: ../adcpdb/a_rr position_file: a_rr_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2012-07-16 17:00:32,484 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2012-07-16 17:00:32,668 DEBUG quick_mpl Starting plot: nav 2012-07-16 17:00:33,555 DEBUG quick_mpl Ending plot: nav 2012-07-16 17:00:33,555 DEBUG quick_mpl Starting plot: refl 2012-07-16 17:00:33,793 DEBUG quick_mplplots found 16.680546 days of data 2012-07-16 17:00:33,794 DEBUG quick_mplplots start day is 546.000000 2012-07-16 17:00:33,794 DEBUG quick_mplplots figures with 2.000000 days per page 2012-07-16 17:00:33,794 DEBUG quick_mplplots printing 9 pages 2012-07-16 17:00:33,794 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-07-16 17:00:33,794 INFO quick_mplplots startdd is 546.0 2012-07-16 17:00:33,794 INFO quick_mplplots dt is 2.0 2012-07-16 17:00:34,567 DEBUG quick_mpl Ending plot: refl 2012-07-16 17:00:34,567 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2012-07-16 17:00:34,567 DEBUG quick_setup edit/lst_temp.tmp exists 2012-07-16 17:00:34,568 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:34,568 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/edit 2012-07-16 17:00:34,568 DEBUG quick_setup running python command "lst_temp" 2012-07-16 17:00:34,568 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr.tem step_size= 1 year_base= 2011 time_ranges: all 2012-07-16 17:00:34,568 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_temp lst_temp.tmp 2012-07-16 17:00:34,600 DEBUG quick_mpl Starting plot: temp 2012-07-16 17:00:34,637 DEBUG quick_mplplots plotting 4807 points 2012-07-16 17:00:34,848 DEBUG quick_mpl Ending plot: temp 2012-07-16 17:00:34,848 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2012-07-16 17:00:34,848 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2012-07-16 17:00:34,848 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:34,849 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/cal/botmtrk 2012-07-16 17:00:34,849 DEBUG quick_setup running python command "lst_btrk" 2012-07-16 17:00:34,849 DEBUG quick_subs dbname: ../../adcpdb/a_rr output: a_rr.btm step_size= 1 year_base= 2011 time_ranges: 2012/06/30 00:25:23 to 2012/07/16 16:55:21 /* whole time range */ 2012-07-16 17:00:34,849 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_btrk lst_btrk.tmp 2012-07-16 17:00:34,864 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2012-07-16 17:00:34,864 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:34,864 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/cal/botmtrk 2012-07-16 17:00:34,864 DEBUG quick_setup running python command "refabsbt" 2012-07-16 17:00:34,864 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.btm fix_file: ../../nav/a_rr.gps output: a_rr.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2012-07-16 17:00:34,864 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabsbt refabsbt.tmp 2012-07-16 17:00:34,871 DEBUG quick_mpl Starting plot: btcal 2012-07-16 17:00:34,871 DEBUG quick_mplplots No data in a_rr.btm 2012-07-16 17:00:34,871 DEBUG quick_mplplots Returning from Btplot with no output 2012-07-16 17:00:34,872 DEBUG quick_mpl Ending plot: btcal 2012-07-16 17:00:34,872 DEBUG quick_setup nav/as_nav.tmp exists 2012-07-16 17:00:34,872 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:34,872 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/nav 2012-07-16 17:00:34,872 DEBUG quick_setup running python command "as_nav" 2012-07-16 17:00:34,872 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/06/30 00:25:23 to 2012/07/16 16:55:21 /* the whole time range */ 2012-07-16 17:00:34,872 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-07-16 17:00:34,921 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2012-07-16 17:00:34,921 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:34,921 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/cal/watertrk 2012-07-16 17:00:34,921 DEBUG quick_setup running python command "timslip" 2012-07-16 17:00:34,921 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_rr.gps reference_file: ../../nav/a_rr.nav output_file: a_rr_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2012-07-16 17:00:34,921 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timslip timslip.tmp 2012-07-16 17:00:34,936 DEBUG quick_mpl Starting plot: wtcal 2012-07-16 17:00:34,938 DEBUG quick_mplplots Found 12 calibration points 2012-07-16 17:00:35,637 DEBUG quick_mpl Ending plot: wtcal 2012-07-16 17:00:35,638 DEBUG quick_run ------------ calib: guess transducer location compared to gps ------------- 2012-07-16 17:00:35,638 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:35,638 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/cal/watertrk 2012-07-16 17:00:35,638 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2012-07-16 17:00:35,638 DEBUG quick_npy Starting: guess_xducerxy 2012-07-16 17:00:35,789 DEBUG quick_npy Ending: guess_xducerxy 2012-07-16 17:00:35,789 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2012-07-16 17:00:35,789 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:35,789 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/vector 2012-07-16 17:00:35,790 DEBUG quick_setup running python command "timegrid" 2012-07-16 17:00:35,790 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_rr.tmp 2012-07-16 17:00:35,799 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:35,800 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/vector 2012-07-16 17:00:35,800 DEBUG quick_setup running python command "as_vect" 2012-07-16 17:00:35,800 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_vect.tmp 2012-07-16 17:00:35,872 DEBUG quick_asect done making vector matfiles 2012-07-16 17:00:35,872 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:35,872 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/contour 2012-07-16 17:00:35,873 DEBUG quick_setup running python command "timegrid" 2012-07-16 17:00:35,873 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_rr.tmp 2012-07-16 17:00:35,884 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:35,884 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/contour 2012-07-16 17:00:35,884 DEBUG quick_setup running python command "as_cont" 2012-07-16 17:00:35,885 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_cont.tmp 2012-07-16 17:00:36,013 DEBUG quick_setup starting in /home/data/RR1208/proc/nb150 2012-07-16 17:00:36,014 DEBUG quick_setup executing commands from /home/data/RR1208/proc/nb150/contour 2012-07-16 17:00:36,014 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_rr 2012-07-16 17:00:36,290 DEBUG quick_asect done running getmat with "allbins" 2012-07-16 17:00:36,312 INFO root copying NOFIG to /home/adcp/www/figures/nb150_hcorr_plot.png 2012-07-16 17:00:36,312 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/nb150_hcorr_plot_thumb.png 2012-07-16 17:00:36,312 DEBUG root matfile is contour/contour_uv.mat 2012-07-16 17:00:36,318 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/nb150_cont_uv.mat 2012-07-16 17:00:36,318 DEBUG root matfile is vector/vector_uv.mat 2012-07-16 17:00:36,318 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/nb150_vect_uv.mat 2012-07-16 17:00:36,319 DEBUG root matfile is contour/contour_xy.mat 2012-07-16 17:00:36,319 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/nb150_cont_xy.mat 2012-07-16 17:00:36,319 DEBUG root matfile is vector/vector_xy.mat 2012-07-16 17:00:36,319 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/nb150_vect_xy.mat 2012-07-16 17:00:36,319 DEBUG root about to copy file edit/a_rr.tem to /home/adcp/www/data/nb150_temp.asc 2012-07-16 17:00:36,320 INFO root copying edit/a_rr.tem to /home/adcp/www/data/nb150_temp.asc 2012-07-16 17:00:38,460 DEBUG root about to copy netcdf file /home/data/RR1208/proc/nb150/contour/nb150.nc to /home/adcp/www/data/nb150.nc 2012-07-16 17:00:38,506 INFO root copying edit/a_rr.tem to /home/adcp/www/data/nb150.nc 2012-07-16 17:00:38,548 INFO root generating pingstats for nb150 2012-07-16 17:00:38,548 INFO root Ending quick_adcp.py