2012-02-12 05:00:50,930 DEBUG root about to write control file parameters to --yearbase 2011 --cruisename RR1201a --configtype python --sonar os75bb --dbname a_rr --datatype uhdas --cfgpath /home/data/RR1201a/proc/os75bb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 1000 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2012-02-12 05:00:50,930 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75bb 2012-02-12 05:00:50,931 DEBUG quick_adcp progdir = /home/currents/programs 2012-02-12 05:00:50,931 DEBUG quick_adcp binos = lnx64 2012-02-12 05:00:50,932 DEBUG quick_setup found cruise_info.hcorr (ashtech, adu, 0) 2012-02-12 05:00:50,933 INFO quick_adcp importing numpy 2012-02-12 05:00:50,945 INFO quick_adcp importing matplotlib 2012-02-12 05:00:51,085 DEBUG quick_mpl in Q_mpl 2012-02-12 05:00:51,085 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_filelist get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_guess_xducerxy run_guess_xducerxy_npy run_loaddb run_loadlta_npy run_loadping run_lstconfig run_lsthdg run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd_lta run_pybincmd_uhdas run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanlta_npy run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy run_xducerxy_npy scanping setflags smoothr timegrid timslip ubprint user_defined_headfunc write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2012-02-12 05:00:51,086 DEBUG quick_adcp cwd is /home/data/RR1201a/proc/os75bb about to run these steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2012-02-12 05:00:51,086 DEBUG quick_adcp original fix file is a_rr.gps 2012-02-12 05:00:51,086 DEBUG quick_adcp smoothed nav file is a_rr_refsm.asc 2012-02-12 05:00:51,086 DEBUG quick_asect extracting matlab files for os75, bb pings 2012-02-12 05:00:51,092 DEBUG quick_subs found 82 files using wildcard expansion from "/home/data/RR1201a/raw/os75/*.raw" 2012-02-12 05:00:51,092 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/RR1201a/raw/os75/rr2012_035_37835.raw ... 2012-02-12 05:00:51,092 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/RR1201a/raw/os75/rr2012_035_37835.raw ... 2012-02-12 05:00:51,093 DEBUG quick_adcp Sun Feb 12 05:00:51 2012 running quick_adcp.py as follows: --cntfile /home/data/RR1201a/proc/os75bb/os75bb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_rr dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 21 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx64 binos lnx64 btrk_step 1 cfgpath /home/data/RR1201a/proc/os75bb/config cntfile /home/data/RR1201a/proc/os75bb/os75bb_qpy.cnt commands None configtype python cruisename RR1201a data_def vmadcp.def datadir /home/data/RR1201a/raw/os75 datafile_glob *.raw datatype uhdas dbname a_rr dday_bailout None debug False diarystr diary quick_adcp.diary displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/RR1201a/raw/os75/rr2012_035_37835.raw', '/home/data/RR1201a/raw/os75/rr2012_035_43200.raw', '/home/data/RR1201a/raw/os75/rr2012_035_50400.raw', '/home/data/RR1201a/raw/os75/rr2012_035_57600.raw', '/home/data/RR1201a/raw/os75/rr2012_035_64800.raw', '/home/data/RR1201a/raw/os75/rr2012_035_72000.raw', '/home/data/RR1201a/raw/os75/rr2012_035_79200.raw', '/home/data/RR1201a/raw/os75/rr2012_036_00000.raw', '/home/data/RR1201a/raw/os75/rr2012_036_07200.raw', '/home/data/RR1201a/raw/os75/rr2012_036_14400.raw', '/home/data/RR1201a/raw/os75/rr2012_036_21600.raw', '/home/data/RR1201a/raw/os75/rr2012_036_28800.raw', '/home/data/RR1201a/raw/os75/rr2012_036_36000.raw', '/home/data/RR1201a/raw/os75/rr2012_036_43200.raw', '/home/data/RR1201a/raw/os75/rr2012_036_50400.raw', '/home/data/RR1201a/raw/os75/rr2012_036_57600.raw', '/home/data/RR1201a/raw/os75/rr2012_036_64800.raw', '/home/data/RR1201a/raw/os75/rr2012_036_72000.raw', '/home/data/RR1201a/raw/os75/rr2012_036_79200.raw', '/home/data/RR1201a/raw/os75/rr2012_037_00000.raw', '/home/data/RR1201a/raw/os75/rr2012_037_07200.raw', '/home/data/RR1201a/raw/os75/rr2012_037_14400.raw', '/home/data/RR1201a/raw/os75/rr2012_037_21600.raw', '/home/data/RR1201a/raw/os75/rr2012_037_28800.raw', '/home/data/RR1201a/raw/os75/rr2012_037_36000.raw', '/home/data/RR1201a/raw/os75/rr2012_037_43200.raw', '/home/data/RR1201a/raw/os75/rr2012_037_50400.raw', '/home/data/RR1201a/raw/os75/rr2012_037_57600.raw', '/home/data/RR1201a/raw/os75/rr2012_037_64800.raw', '/home/data/RR1201a/raw/os75/rr2012_037_72000.raw', '/home/data/RR1201a/raw/os75/rr2012_037_79200.raw', '/home/data/RR1201a/raw/os75/rr2012_038_00000.raw', '/home/data/RR1201a/raw/os75/rr2012_038_07200.raw', '/home/data/RR1201a/raw/os75/rr2012_038_14400.raw', '/home/data/RR1201a/raw/os75/rr2012_038_21600.raw', '/home/data/RR1201a/raw/os75/rr2012_038_28800.raw', '/home/data/RR1201a/raw/os75/rr2012_038_36000.raw', '/home/data/RR1201a/raw/os75/rr2012_038_43200.raw', '/home/data/RR1201a/raw/os75/rr2012_038_50400.raw', '/home/data/RR1201a/raw/os75/rr2012_038_57600.raw', '/home/data/RR1201a/raw/os75/rr2012_038_64800.raw', '/home/data/RR1201a/raw/os75/rr2012_038_72000.raw', '/home/data/RR1201a/raw/os75/rr2012_038_79200.raw', '/home/data/RR1201a/raw/os75/rr2012_039_00000.raw', '/home/data/RR1201a/raw/os75/rr2012_039_07200.raw', '/home/data/RR1201a/raw/os75/rr2012_039_14400.raw', '/home/data/RR1201a/raw/os75/rr2012_039_21600.raw', '/home/data/RR1201a/raw/os75/rr2012_039_28800.raw', '/home/data/RR1201a/raw/os75/rr2012_039_36000.raw', '/home/data/RR1201a/raw/os75/rr2012_039_43200.raw', '/home/data/RR1201a/raw/os75/rr2012_039_50400.raw', '/home/data/RR1201a/raw/os75/rr2012_039_57600.raw', '/home/data/RR1201a/raw/os75/rr2012_039_64800.raw', '/home/data/RR1201a/raw/os75/rr2012_039_72000.raw', '/home/data/RR1201a/raw/os75/rr2012_039_79200.raw', '/home/data/RR1201a/raw/os75/rr2012_040_00000.raw', '/home/data/RR1201a/raw/os75/rr2012_040_07200.raw', '/home/data/RR1201a/raw/os75/rr2012_040_14400.raw', '/home/data/RR1201a/raw/os75/rr2012_040_21600.raw', '/home/data/RR1201a/raw/os75/rr2012_040_28800.raw', '/home/data/RR1201a/raw/os75/rr2012_040_36000.raw', '/home/data/RR1201a/raw/os75/rr2012_040_43200.raw', '/home/data/RR1201a/raw/os75/rr2012_040_50400.raw', '/home/data/RR1201a/raw/os75/rr2012_040_57600.raw', '/home/data/RR1201a/raw/os75/rr2012_040_64800.raw', '/home/data/RR1201a/raw/os75/rr2012_040_72000.raw', '/home/data/RR1201a/raw/os75/rr2012_040_79200.raw', '/home/data/RR1201a/raw/os75/rr2012_041_00000.raw', '/home/data/RR1201a/raw/os75/rr2012_041_07200.raw', '/home/data/RR1201a/raw/os75/rr2012_041_14400.raw', '/home/data/RR1201a/raw/os75/rr2012_041_21600.raw', '/home/data/RR1201a/raw/os75/rr2012_041_28800.raw', '/home/data/RR1201a/raw/os75/rr2012_041_36000.raw', '/home/data/RR1201a/raw/os75/rr2012_041_43200.raw', '/home/data/RR1201a/raw/os75/rr2012_041_50400.raw', '/home/data/RR1201a/raw/os75/rr2012_041_57600.raw', '/home/data/RR1201a/raw/os75/rr2012_041_64800.raw', '/home/data/RR1201a/raw/os75/rr2012_041_72000.raw', '/home/data/RR1201a/raw/os75/rr2012_041_79200.raw', '/home/data/RR1201a/raw/os75/rr2012_042_00000.raw', '/home/data/RR1201a/raw/os75/rr2012_042_07200.raw', '/home/data/RR1201a/raw/os75/rr2012_042_14400.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 21 fixfile a_rr.gps frequency 75 gbin_style python gbindirbase /home/data/RR1201a/gbin hcorr_inst ashtech help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 399 max_search_depth 1000 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_rr.gps overview False pgmin 50 ping_headcorr False pingtype bb post_headcorr None printformats png proc_engine python proc_yearbase 2011 progdir /home/currents/programs py_gbindirbase /home/data/RR1201a/gbin quiet False rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_rr_refsm.asc sonar os75bb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2011 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2012-02-12 05:00:51,093 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2012-02-12 05:00:51,093 DEBUG quick_run executing commands from /home/data/RR1201a/proc/os75bb/edit 2012-02-12 05:00:51,093 DEBUG quick_run setup.m exists. not replacing 2012-02-12 05:00:51,093 DEBUG quick_run asetup.m exists. not replacing 2012-02-12 05:00:51,093 DEBUG quick_run aflagit_setup.m exists. not replacing 2012-02-12 05:00:51,093 DEBUG quick_adcp about to run numpy scan, requiring python gbins 2012-02-12 05:00:51,093 DEBUG quick_npy Starting: scanping 2012-02-12 05:00:51,174 DEBUG quick_npy Ending: scanping 2012-02-12 05:00:51,175 DEBUG quick_subs start_end_time 2012/02/05 10:30:40 to 2012/02/05 10:40:48 2012-02-12 05:00:51,175 DEBUG quick_subs dd0: 400.437963 dd1: 400.445000 2012-02-12 05:00:51,175 DEBUG quick_adcp in quick_adcp.py: after scan; look for database times in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:51,175 DEBUG quick_adcp looking for database with adcpdb/a_rr*.blk 2012-02-12 05:00:51,176 DEBUG quick_adcp database found: listing blocks 2012-02-12 05:00:51,176 DEBUG quick_subs removing a_rrdir.blk 2012-02-12 05:00:51,176 DEBUG quick_subs about to run mkblkdir 2012-02-12 05:00:51,176 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-02-12 05:00:51,176 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-02-12 05:00:51,184 DEBUG quick_subs database passes. 2012-02-12 05:00:51,185 DEBUG quick_subs start_end_time 2012/02/05 10:35:40 to 2012/02/12 04:45:37 2012-02-12 05:00:51,185 DEBUG quick_subs dd0: 400.441435 dd1: 407.198345 2012-02-12 05:00:51,185 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2012-02-12 05:00:51,185 DEBUG quick_adcp origdb_time_range is 2012/02/05 10:35:40 to 2012/02/12 04:45:37 2012-02-12 05:00:51,185 DEBUG quick_adcp (400.441435 to 407.198345) 2012-02-12 05:00:51,185 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2012-02-12 05:00:51,185 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:51,186 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/load 2012-02-12 05:00:51,186 DEBUG quick_setup running python command "run_pingavg_npy" 2012-02-12 05:00:51,186 DEBUG quick_npy Starting: pingavg 2012-02-12 05:00:51,187 DEBUG quick_npy singleping editing parameters: 2012-02-12 05:00:51,187 DEBUG quick_npy bigtarget_mab_window : 11 2012-02-12 05:00:51,188 DEBUG quick_npy rl_endbin : 20 2012-02-12 05:00:51,188 DEBUG quick_npy max_search_depth : 1000 2012-02-12 05:00:51,188 DEBUG quick_npy cor_cutoff : 120 2012-02-12 05:00:51,188 DEBUG quick_npy ampfilt : 40 2012-02-12 05:00:51,188 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2012-02-12 05:00:51,188 DEBUG quick_npy rl_startbin : 2 2012-02-12 05:00:51,188 DEBUG quick_npy ecutoff : 1 2012-02-12 05:00:51,188 DEBUG quick_npy refavg_valcutoff : 1 2012-02-12 05:00:51,188 DEBUG quick_npy weakprof_percent : 30 2012-02-12 05:00:51,188 DEBUG quick_npy bigtarget_ampthresh : 55 2012-02-12 05:00:51,193 INFO pingavg Pingavg.run for time range 407.166710 to 407.208861 2012-02-12 05:00:51,217 DEBUG pingavg Chunk 1 of 1, 407.166710 to 407.208861 2012-02-12 05:00:51,217 DEBUG pingavg Nothing written 2012-02-12 05:00:51,217 DEBUG quick_npy wrote 0 averages 2012-02-12 05:00:51,217 DEBUG quick_npy Ending: pingavg 2012-02-12 05:00:51,218 DEBUG quick_subs in del_overlapping 2012-02-12 05:00:51,218 DEBUG quick_subs lastblock: 2012-02-12 05:00:51,218 DEBUG quick_subs 7 2012-02-12 05:00:51,218 DEBUG quick_subs lastcmd: 2012-02-12 05:00:51,218 DEBUG quick_subs 7 2012-02-12 05:00:51,218 DEBUG quick_subs delblks: 2012-02-12 05:00:51,218 DEBUG quick_subs [7] 2012-02-12 05:00:51,218 DEBUG quick_subs loadblks: 2012-02-12 05:00:51,218 DEBUG quick_subs [7] 2012-02-12 05:00:51,219 DEBUG quick_subs about to run mkblkdir 2012-02-12 05:00:51,219 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-02-12 05:00:51,219 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-02-12 05:00:51,227 DEBUG quick_subs database passes. 2012-02-12 05:00:51,228 DEBUG quick_subs start_end_time 2012/02/05 10:35:40 to 2012/02/11 16:30:37 2012-02-12 05:00:51,228 DEBUG quick_subs dd0: 400.441435 dd1: 406.687928 2012-02-12 05:00:51,228 DEBUG quick_run [7] 2012-02-12 05:00:51,228 DEBUG quick_run cmdlist 2012-02-12 05:00:51,228 DEBUG quick_run ['./ens_blk007.cmd'] 2012-02-12 05:00:51,229 INFO quick_run Warning: 1 files will be loaded; 7 already exist 2012-02-12 05:00:51,229 INFO quick_run Sun Feb 12 05:00:51 2012 2012-02-12 05:00:51,230 INFO quick_run about to load uhdas files 2012-02-12 05:00:51,230 INFO quick_run /home/data/RR1201a/raw/os75/rr2012_035_37835.raw /home/data/RR1201a/raw/os75/rr2012_035_43200.raw /home/data/RR1201a/raw/os75/rr2012_035_50400.raw /home/data/RR1201a/raw/os75/rr2012_035_57600.raw /home/data/RR1201a/raw/os75/rr2012_035_64800.raw /home/data/RR1201a/raw/os75/rr2012_035_72000.raw /home/data/RR1201a/raw/os75/rr2012_035_79200.raw /home/data/RR1201a/raw/os75/rr2012_036_00000.raw /home/data/RR1201a/raw/os75/rr2012_036_07200.raw /home/data/RR1201a/raw/os75/rr2012_036_14400.raw /home/data/RR1201a/raw/os75/rr2012_036_21600.raw /home/data/RR1201a/raw/os75/rr2012_036_28800.raw /home/data/RR1201a/raw/os75/rr2012_036_36000.raw /home/data/RR1201a/raw/os75/rr2012_036_43200.raw /home/data/RR1201a/raw/os75/rr2012_036_50400.raw /home/data/RR1201a/raw/os75/rr2012_036_57600.raw /home/data/RR1201a/raw/os75/rr2012_036_64800.raw /home/data/RR1201a/raw/os75/rr2012_036_72000.raw /home/data/RR1201a/raw/os75/rr2012_036_79200.raw /home/data/RR1201a/raw/os75/rr2012_037_00000.raw /home/data/RR1201a/raw/os75/rr2012_037_07200.raw /home/data/RR1201a/raw/os75/rr2012_037_14400.raw /home/data/RR1201a/raw/os75/rr2012_037_21600.raw /home/data/RR1201a/raw/os75/rr2012_037_28800.raw /home/data/RR1201a/raw/os75/rr2012_037_36000.raw /home/data/RR1201a/raw/os75/rr2012_037_43200.raw /home/data/RR1201a/raw/os75/rr2012_037_50400.raw /home/data/RR1201a/raw/os75/rr2012_037_57600.raw /home/data/RR1201a/raw/os75/rr2012_037_64800.raw /home/data/RR1201a/raw/os75/rr2012_037_72000.raw /home/data/RR1201a/raw/os75/rr2012_037_79200.raw /home/data/RR1201a/raw/os75/rr2012_038_00000.raw /home/data/RR1201a/raw/os75/rr2012_038_07200.raw /home/data/RR1201a/raw/os75/rr2012_038_14400.raw /home/data/RR1201a/raw/os75/rr2012_038_21600.raw /home/data/RR1201a/raw/os75/rr2012_038_28800.raw /home/data/RR1201a/raw/os75/rr2012_038_36000.raw /home/data/RR1201a/raw/os75/rr2012_038_43200.raw /home/data/RR1201a/raw/os75/rr2012_038_50400.raw /home/data/RR1201a/raw/os75/rr2012_038_57600.raw /home/data/RR1201a/raw/os75/rr2012_038_64800.raw /home/data/RR1201a/raw/os75/rr2012_038_72000.raw /home/data/RR1201a/raw/os75/rr2012_038_79200.raw /home/data/RR1201a/raw/os75/rr2012_039_00000.raw /home/data/RR1201a/raw/os75/rr2012_039_07200.raw /home/data/RR1201a/raw/os75/rr2012_039_14400.raw /home/data/RR1201a/raw/os75/rr2012_039_21600.raw /home/data/RR1201a/raw/os75/rr2012_039_28800.raw /home/data/RR1201a/raw/os75/rr2012_039_36000.raw /home/data/RR1201a/raw/os75/rr2012_039_43200.raw /home/data/RR1201a/raw/os75/rr2012_039_50400.raw /home/data/RR1201a/raw/os75/rr2012_039_57600.raw /home/data/RR1201a/raw/os75/rr2012_039_64800.raw /home/data/RR1201a/raw/os75/rr2012_039_72000.raw /home/data/RR1201a/raw/os75/rr2012_039_79200.raw /home/data/RR1201a/raw/os75/rr2012_040_00000.raw /home/data/RR1201a/raw/os75/rr2012_040_07200.raw /home/data/RR1201a/raw/os75/rr2012_040_14400.raw /home/data/RR1201a/raw/os75/rr2012_040_21600.raw /home/data/RR1201a/raw/os75/rr2012_040_28800.raw /home/data/RR1201a/raw/os75/rr2012_040_36000.raw /home/data/RR1201a/raw/os75/rr2012_040_43200.raw /home/data/RR1201a/raw/os75/rr2012_040_50400.raw /home/data/RR1201a/raw/os75/rr2012_040_57600.raw /home/data/RR1201a/raw/os75/rr2012_040_64800.raw /home/data/RR1201a/raw/os75/rr2012_040_72000.raw /home/data/RR1201a/raw/os75/rr2012_040_79200.raw /home/data/RR1201a/raw/os75/rr2012_041_00000.raw /home/data/RR1201a/raw/os75/rr2012_041_07200.raw /home/data/RR1201a/raw/os75/rr2012_041_14400.raw /home/data/RR1201a/raw/os75/rr2012_041_21600.raw /home/data/RR1201a/raw/os75/rr2012_041_28800.raw /home/data/RR1201a/raw/os75/rr2012_041_36000.raw /home/data/RR1201a/raw/os75/rr2012_041_43200.raw /home/data/RR1201a/raw/os75/rr2012_041_50400.raw /home/data/RR1201a/raw/os75/rr2012_041_57600.raw /home/data/RR1201a/raw/os75/rr2012_041_64800.raw /home/data/RR1201a/raw/os75/rr2012_041_72000.raw /home/data/RR1201a/raw/os75/rr2012_041_79200.raw /home/data/RR1201a/raw/os75/rr2012_042_00000.raw /home/data/RR1201a/raw/os75/rr2012_042_07200.raw /home/data/RR1201a/raw/os75/rr2012_042_14400.raw 2012-02-12 05:00:51,230 DEBUG quick_setup load/ldcodas.tmp exists 2012-02-12 05:00:51,230 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:51,230 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/load 2012-02-12 05:00:51,230 DEBUG quick_setup running python command "ldcodas" 2012-02-12 05:00:51,230 DEBUG quick_subs filling "thisload" timerange 2012-02-12 05:00:51,231 DEBUG quick_subs in ldcodas 2012-02-12 05:00:51,231 DEBUG quick_subs cmdlist: 2012-02-12 05:00:51,231 DEBUG quick_subs ['./ens_blk007.cmd'] 2012-02-12 05:00:51,231 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_rr DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk007.cmd 2012-02-12 05:00:51,231 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/ldcodas ldcodas.tmp 2012-02-12 05:00:51,254 DEBUG quick_subs removing a_rrdir.blk 2012-02-12 05:00:51,254 DEBUG quick_subs about to run mkblkdir 2012-02-12 05:00:51,254 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-02-12 05:00:51,254 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-02-12 05:00:51,262 DEBUG quick_subs database passes. 2012-02-12 05:00:51,263 DEBUG quick_subs start_end_time 2012/02/05 10:35:40 to 2012/02/12 05:00:37 2012-02-12 05:00:51,263 DEBUG quick_subs dd0: 400.441435 dd1: 407.208762 2012-02-12 05:00:51,263 INFO quick_adcp --------------------- 2012-02-12 05:00:51,263 INFO quick_adcp loaded_time_range is 2012/02/05 10:35:40 to 2012/02/12 05:00:37 2012-02-12 05:00:51,263 INFO quick_adcp (400.441435 to 407.208762) 2012-02-12 05:00:51,263 INFO quick_adcp origdb_time_range is 2012/02/05 10:35:40 to 2012/02/12 04:45:37 2012-02-12 05:00:51,263 INFO quick_adcp (400.441435 to 407.198345) 2012-02-12 05:00:51,264 INFO quick_adcp thisload_time_range is 2012/02/11 16:35:39 to 2012/02/12 05:00:37 2012-02-12 05:00:51,264 INFO quick_adcp (406.691424 to 406.691424) 2012-02-12 05:00:51,264 INFO quick_adcp --------------------- 2012-02-12 05:00:51,264 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:51,264 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/adcpdb 2012-02-12 05:00:51,264 DEBUG quick_setup running python command "lst_conf" 2012-02-12 05:00:51,264 DEBUG quick_subs dbname: a_rr output: a_rr.cnh time_ranges: all 2012-02-12 05:00:51,264 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_conf lst_conf.tmp 2012-02-12 05:00:51,472 DEBUG quick_setup found (in edit/asetup.m): 2012-02-12 05:00:51,473 DEBUG quick_setup config.beamangle is 30 2012-02-12 05:00:51,473 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2012-02-12 05:00:51,473 DEBUG quick_run ------------ step 4: run setflags ------------- 2012-02-12 05:00:51,473 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:51,473 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/edit 2012-02-12 05:00:51,473 DEBUG quick_setup running python command "setflags" 2012-02-12 05:00:51,473 DEBUG quick_subs dbname: ../adcpdb/a_rr pg_min: 50 set_range_bit time_ranges: all 2012-02-12 05:00:51,473 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2012-02-12 05:00:51,491 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2012-02-12 05:00:51,492 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:51,492 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:51,492 DEBUG quick_setup running python command "catnav" 2012-02-12 05:00:51,493 DEBUG quick_run ------------ step 6: list heading ------------- 2012-02-12 05:00:51,493 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2012-02-12 05:00:51,493 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:51,493 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/cal/rotate 2012-02-12 05:00:51,493 DEBUG quick_setup running python command "lst_hdg" 2012-02-12 05:00:51,493 DEBUG quick_subs dbname: ../../adcpdb/a_rr output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2012-02-12 05:00:51,494 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_hdg lst_hdg.tmp 2012-02-12 05:00:51,507 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2012-02-12 05:00:51,507 DEBUG quick_run hcorr_inst is ashtech 2012-02-12 05:00:51,507 DEBUG quick_mpl Starting plot: hcorr 2012-02-12 05:00:51,526 DEBUG quick_mplplots found 6.767332 days of data 2012-02-12 05:00:51,526 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2012-02-12 05:00:51,526 DEBUG quick_mplplots printing 2 pages 2012-02-12 05:00:52,104 DEBUG quick_mpl Ending plot: hcorr 2012-02-12 05:00:52,172 DEBUG quick_run ------------ step 7: rotate ------------- 2012-02-12 05:00:52,172 DEBUG quick_setup cal/rotate/norotate.tmp exists 2012-02-12 05:00:52,173 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:52,173 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/cal/rotate 2012-02-12 05:00:52,173 DEBUG quick_setup running python command "norotate" 2012-02-12 05:00:52,173 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. DB_NAME: ../../adcpdb/a_rr LOG_FILE: rotate.log TIME_RANGE: 2012/02/05 10:35:40 to 2012/02/12 05:00:37 OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2012-02-12 05:00:52,173 DEBUG quick_setup about to run echo "writing dummy rotate file" 2012-02-12 05:00:52,180 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2012-02-12 05:00:52,181 DEBUG quick_setup nav/as_nav.tmp exists 2012-02-12 05:00:52,181 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:52,181 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:52,181 DEBUG quick_setup running python command "as_nav" 2012-02-12 05:00:52,181 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/02/05 10:35:40 to 2012/02/12 05:00:37 /* the whole time range */ 2012-02-12 05:00:52,182 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-02-12 05:00:52,210 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2012-02-12 05:00:52,211 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:52,211 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:52,211 DEBUG quick_setup running python command "refabs" 2012-02-12 05:00:52,211 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.nav fix_file: a_rr.gps output: a_rr.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2012-02-12 05:00:52,211 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2012-02-12 05:00:52,229 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2012-02-12 05:00:52,229 DEBUG quick_setup nav/smoothr.tmp exists 2012-02-12 05:00:52,229 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:52,229 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:52,229 DEBUG quick_setup running python command "smoothr" 2012-02-12 05:00:52,229 DEBUG quick_subs reference_file: a_rr.nav refabs_output: a_rr.ref output: a_rr.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-02-12 05:00:52,229 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2012-02-12 05:00:52,305 DEBUG quick_adcp about to run numpy refsm 2012-02-12 05:00:52,305 DEBUG quick_npy Starting: refsm 2012-02-12 05:00:52,369 INFO nav dtmin = -0.50 dtmax = 0.50 2012-02-12 05:00:52,432 DEBUG quick_npy Ending: refsm 2012-02-12 05:00:52,432 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2012-02-12 05:00:52,432 DEBUG quick_setup nav/putnav.tmp exists 2012-02-12 05:00:52,432 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:52,432 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:52,432 DEBUG quick_setup running python command "putnav" 2012-02-12 05:00:52,432 DEBUG quick_subs dbname: ../adcpdb/a_rr position_file: a_rr_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2012-02-12 05:00:52,432 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2012-02-12 05:00:52,461 DEBUG quick_adcp plotting navigation 2012-02-12 05:00:52,461 DEBUG quick_mpl Starting plot: nav 2012-02-12 05:00:52,748 DEBUG quick_mpl Ending plot: nav 2012-02-12 05:00:52,749 DEBUG quick_mpl Starting plot: refl 2012-02-12 05:00:52,792 DEBUG quick_mplplots found 6.760401 days of data 2012-02-12 05:00:52,792 DEBUG quick_mplplots start day is 400.000000 2012-02-12 05:00:52,792 DEBUG quick_mplplots figures with 2.000000 days per page 2012-02-12 05:00:52,792 DEBUG quick_mplplots printing 4 pages 2012-02-12 05:00:52,792 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-02-12 05:00:52,793 INFO quick_mplplots startdd is 400.0 2012-02-12 05:00:52,793 INFO quick_mplplots dt is 2.0 2012-02-12 05:00:53,340 DEBUG quick_mpl Ending plot: refl 2012-02-12 05:00:53,340 DEBUG quick_run ------------ step 13: automatically find profile flags using python ------------- 2012-02-12 05:00:53,340 DEBUG quick_run find profile flags ------------ *** ------------- 2012-02-12 05:00:53,340 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:53,341 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/edit 2012-02-12 05:00:53,341 DEBUG quick_setup running python command "run_autoedit_npy" 2012-02-12 05:00:53,341 DEBUG quick_npy Starting: autoedit 2012-02-12 05:00:53,404 DEBUG pingedit no data found in ddrange [406.39142361111112, 406.69142361111113] 2012-02-12 05:00:53,404 ERROR pingedit no data available 2012-02-12 05:00:53,404 DEBUG quick_npy Ending: autoedit 2012-02-12 05:00:53,404 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2012-02-12 05:00:53,404 DEBUG quick_run starting in: /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:53,404 DEBUG quick_run executing commands from: edit 2012-02-12 05:00:53,406 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/set_lgb ../adcpdb/a_rr 30 2012-02-12 05:00:53,412 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2012-02-12 05:00:53,432 DEBUG quick_run changing directories back to /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:53,432 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2012-02-12 05:00:53,432 DEBUG quick_setup nav/as_nav.tmp exists 2012-02-12 05:00:53,432 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:53,433 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:53,433 DEBUG quick_setup running python command "as_nav" 2012-02-12 05:00:53,433 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/02/05 10:35:40 to 2012/02/12 05:00:37 /* the whole time range */ 2012-02-12 05:00:53,433 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-02-12 05:00:53,458 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2012-02-12 05:00:53,458 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:53,458 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:53,458 DEBUG quick_setup running python command "refabs" 2012-02-12 05:00:53,458 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.nav fix_file: a_rr.gps output: a_rr.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2012-02-12 05:00:53,459 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2012-02-12 05:00:53,477 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2012-02-12 05:00:53,477 DEBUG quick_setup nav/smoothr.tmp exists 2012-02-12 05:00:53,477 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:53,478 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:53,478 DEBUG quick_setup running python command "smoothr" 2012-02-12 05:00:53,478 DEBUG quick_subs reference_file: a_rr.nav refabs_output: a_rr.ref output: a_rr.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-02-12 05:00:53,478 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2012-02-12 05:00:53,554 DEBUG quick_adcp running refsm 2012-02-12 05:00:53,555 DEBUG quick_npy Starting: refsm 2012-02-12 05:00:53,614 INFO nav dtmin = -0.50 dtmax = 0.50 2012-02-12 05:00:53,676 DEBUG quick_npy Ending: refsm 2012-02-12 05:00:53,676 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2012-02-12 05:00:53,676 DEBUG quick_setup nav/putnav.tmp exists 2012-02-12 05:00:53,676 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:53,676 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:53,677 DEBUG quick_setup running python command "putnav" 2012-02-12 05:00:53,677 DEBUG quick_subs dbname: ../adcpdb/a_rr position_file: a_rr_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2012-02-12 05:00:53,677 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2012-02-12 05:00:53,705 DEBUG quick_mpl Starting plot: nav 2012-02-12 05:00:53,993 DEBUG quick_mpl Ending plot: nav 2012-02-12 05:00:53,993 DEBUG quick_mpl Starting plot: refl 2012-02-12 05:00:54,037 DEBUG quick_mplplots found 6.760401 days of data 2012-02-12 05:00:54,038 DEBUG quick_mplplots start day is 400.000000 2012-02-12 05:00:54,038 DEBUG quick_mplplots figures with 2.000000 days per page 2012-02-12 05:00:54,038 DEBUG quick_mplplots printing 4 pages 2012-02-12 05:00:54,038 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-02-12 05:00:54,038 INFO quick_mplplots startdd is 400.0 2012-02-12 05:00:54,038 INFO quick_mplplots dt is 2.0 2012-02-12 05:00:54,587 DEBUG quick_mpl Ending plot: refl 2012-02-12 05:00:54,587 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2012-02-12 05:00:54,587 DEBUG quick_setup edit/lst_temp.tmp exists 2012-02-12 05:00:54,587 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,588 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/edit 2012-02-12 05:00:54,588 DEBUG quick_setup running python command "lst_temp" 2012-02-12 05:00:54,588 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr.tem step_size= 1 year_base= 2011 time_ranges: all 2012-02-12 05:00:54,588 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_temp lst_temp.tmp 2012-02-12 05:00:54,605 DEBUG quick_mpl Starting plot: temp 2012-02-12 05:00:54,621 DEBUG quick_mplplots plotting 1950 points 2012-02-12 05:00:54,845 DEBUG quick_mpl Ending plot: temp 2012-02-12 05:00:54,845 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2012-02-12 05:00:54,845 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2012-02-12 05:00:54,846 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,846 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/cal/botmtrk 2012-02-12 05:00:54,846 DEBUG quick_setup running python command "lst_btrk" 2012-02-12 05:00:54,846 DEBUG quick_subs dbname: ../../adcpdb/a_rr output: a_rr.btm step_size= 1 year_base= 2011 time_ranges: 2012/02/05 10:35:40 to 2012/02/12 05:00:37 /* whole time range */ 2012-02-12 05:00:54,846 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_btrk lst_btrk.tmp 2012-02-12 05:00:54,856 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2012-02-12 05:00:54,856 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,856 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/cal/botmtrk 2012-02-12 05:00:54,856 DEBUG quick_setup running python command "refabsbt" 2012-02-12 05:00:54,856 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.btm fix_file: ../../nav/a_rr.gps output: a_rr.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2012-02-12 05:00:54,857 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabsbt refabsbt.tmp 2012-02-12 05:00:54,862 DEBUG quick_mpl Starting plot: btcal 2012-02-12 05:00:54,863 DEBUG quick_mplplots No data in a_rr.btm 2012-02-12 05:00:54,863 DEBUG quick_mplplots Returning from Btplot with no output 2012-02-12 05:00:54,863 DEBUG quick_mpl Ending plot: btcal 2012-02-12 05:00:54,863 DEBUG quick_setup nav/as_nav.tmp exists 2012-02-12 05:00:54,863 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,863 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/nav 2012-02-12 05:00:54,863 DEBUG quick_setup running python command "as_nav" 2012-02-12 05:00:54,863 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/02/05 10:35:40 to 2012/02/12 05:00:37 /* the whole time range */ 2012-02-12 05:00:54,864 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-02-12 05:00:54,887 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2012-02-12 05:00:54,888 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,888 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/cal/watertrk 2012-02-12 05:00:54,888 DEBUG quick_setup running python command "timslip" 2012-02-12 05:00:54,888 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_rr.gps reference_file: ../../nav/a_rr.nav output_file: a_rr_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2012-02-12 05:00:54,888 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timslip timslip.tmp 2012-02-12 05:00:54,898 DEBUG quick_mpl Starting plot: wtcal 2012-02-12 05:00:54,899 DEBUG quick_mplplots No watertrack calibration data 2012-02-12 05:00:54,899 DEBUG quick_mpl Ending plot: wtcal 2012-02-12 05:00:54,899 DEBUG quick_run ------------ calib: guess transducer location compared to gps ------------- 2012-02-12 05:00:54,899 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,900 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/cal/watertrk 2012-02-12 05:00:54,900 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2012-02-12 05:00:54,900 DEBUG quick_npy Starting: guess_xducerxy 2012-02-12 05:00:54,974 DEBUG quick_npy Ending: guess_xducerxy 2012-02-12 05:00:54,974 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2012-02-12 05:00:54,975 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,975 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/vector 2012-02-12 05:00:54,975 DEBUG quick_setup running python command "timegrid" 2012-02-12 05:00:54,975 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_rr.tmp 2012-02-12 05:00:54,982 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:54,982 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/vector 2012-02-12 05:00:54,982 DEBUG quick_setup running python command "as_vect" 2012-02-12 05:00:54,982 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_vect.tmp 2012-02-12 05:00:55,023 DEBUG quick_asect done making vector matfiles 2012-02-12 05:00:55,023 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:55,023 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/contour 2012-02-12 05:00:55,023 DEBUG quick_setup running python command "timegrid" 2012-02-12 05:00:55,023 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_rr.tmp 2012-02-12 05:00:55,031 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:55,031 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/contour 2012-02-12 05:00:55,031 DEBUG quick_setup running python command "as_cont" 2012-02-12 05:00:55,031 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_cont.tmp 2012-02-12 05:00:55,089 DEBUG quick_setup starting in /home/data/RR1201a/proc/os75bb 2012-02-12 05:00:55,090 DEBUG quick_setup executing commands from /home/data/RR1201a/proc/os75bb/contour 2012-02-12 05:00:55,090 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_rr 2012-02-12 05:00:55,244 DEBUG quick_asect done running getmat with "allbins" 2012-02-12 05:00:55,266 INFO root copying NOFIG to /home/adcp/www/figures/os75bb_hcorr_plot.png 2012-02-12 05:00:55,267 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75bb_hcorr_plot_thumb.png 2012-02-12 05:00:55,267 DEBUG root matfile is contour/contour_uv.mat 2012-02-12 05:00:55,270 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75bb_cont_uv.mat 2012-02-12 05:00:55,270 DEBUG root matfile is vector/vector_uv.mat 2012-02-12 05:00:55,270 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75bb_vect_uv.mat 2012-02-12 05:00:55,270 DEBUG root matfile is contour/contour_xy.mat 2012-02-12 05:00:55,271 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75bb_cont_xy.mat 2012-02-12 05:00:55,271 DEBUG root matfile is vector/vector_xy.mat 2012-02-12 05:00:55,271 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75bb_vect_xy.mat 2012-02-12 05:00:55,271 DEBUG root about to copy file edit/a_rr.tem to /home/adcp/www/data/os75bb_temp.asc 2012-02-12 05:00:55,272 INFO root copying edit/a_rr.tem to /home/adcp/www/data/os75bb_temp.asc 2012-02-12 05:00:55,568 DEBUG root about to copy netcdf file /home/data/RR1201a/proc/os75bb/contour/os75bb.nc to /home/adcp/www/data/os75bb.nc 2012-02-12 05:00:55,576 INFO root copying edit/a_rr.tem to /home/adcp/www/data/os75bb.nc 2012-02-12 05:00:55,592 INFO root generating pingstats for os75bb 2012-02-12 05:00:55,592 INFO root Ending quick_adcp.py