2011-11-26 06:12:06,273 DEBUG root about to write control file parameters to --yearbase 2011 --cruisename MV1112 --configtype python --sonar os150nb --dbname a_mv --datatype uhdas --cfgpath /home/data/MV1112/proc/os150nb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 500 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2011-11-26 06:12:06,274 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os150nb 2011-11-26 06:12:06,275 DEBUG quick_adcp progdir = /home/currents/programs 2011-11-26 06:12:06,275 DEBUG quick_adcp binos = lnx64 2011-11-26 06:12:06,277 DEBUG quick_setup found cruise_info.hcorr (ashtech, adu, 0) 2011-11-26 06:12:06,278 INFO quick_adcp importing numpy 2011-11-26 06:12:06,291 INFO quick_adcp importing matplotlib 2011-11-26 06:12:06,432 DEBUG quick_mpl in Q_mpl 2011-11-26 06:12:06,433 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_filelist get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_guess_xducerxy run_guess_xducerxy_npy run_loaddb run_loadlta_npy run_loadping run_lstconfig run_lsthdg run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd_lta run_pybincmd_uhdas run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanlta_npy run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy run_xducerxy_npy scanping setflags smoothr timegrid timslip ubprint user_defined_headfunc write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2011-11-26 06:12:06,433 INFO quick_adcp cwd is /home/data/MV1112/proc/os150nb about to run these steps: - editsetup - scandata - avg_and_load - setflags - getnav - get_headcorr - rotate - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - apply_edit - navsteps - lst_temp - calib - matfiles - find_pflags 2011-11-26 06:12:06,433 INFO quick_adcp original fix file is a_mv.gps 2011-11-26 06:12:06,433 INFO quick_adcp smoothed nav file is a_mv_refsm.asc 2011-11-26 06:12:06,433 DEBUG quick_asect extracting matlab files for os150, nb pings 2011-11-26 06:12:06,450 DEBUG quick_subs found 265 files using wildcard expansion from "/home/data/MV1112/raw/os150/*.raw" 2011-11-26 06:12:06,450 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MV1112/raw/os150/mv2011_306_49876.raw ... 2011-11-26 06:12:06,451 DEBUG quick_adcp Sat Nov 26 06:12:06 2011 running quick_adcp.py as follows: --cntfile /home/data/MV1112/proc/os150nb/os150nb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_mv dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375] firstdepth 16 gridnum 80 increment 5 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx64 binos lnx64 btrk_step 1 cfgpath /home/data/MV1112/proc/os150nb/config cntfile /home/data/MV1112/proc/os150nb/os150nb_qpy.cnt commands None configtype python cruisename MV1112 data_def vmadcp.def datadir /home/data/MV1112/raw/os150 datafile_glob *.raw datatype uhdas dbname a_mv dday_bailout None debug False diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/MV1112/raw/os150/mv2011_306_49876.raw', '/home/data/MV1112/raw/os150/mv2011_306_50400.raw', '/home/data/MV1112/raw/os150/mv2011_306_57166.raw', '/home/data/MV1112/raw/os150/mv2011_306_57600.raw', '/home/data/MV1112/raw/os150/mv2011_306_64800.raw', '/home/data/MV1112/raw/os150/mv2011_306_72000.raw', '/home/data/MV1112/raw/os150/mv2011_306_79200.raw', '/home/data/MV1112/raw/os150/mv2011_307_00000.raw', '/home/data/MV1112/raw/os150/mv2011_307_07200.raw', '/home/data/MV1112/raw/os150/mv2011_307_14400.raw', 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'/home/data/MV1112/raw/os150/mv2011_327_07200.raw', '/home/data/MV1112/raw/os150/mv2011_327_14400.raw', '/home/data/MV1112/raw/os150/mv2011_327_21600.raw', '/home/data/MV1112/raw/os150/mv2011_327_28800.raw', '/home/data/MV1112/raw/os150/mv2011_327_36000.raw', '/home/data/MV1112/raw/os150/mv2011_327_43200.raw', '/home/data/MV1112/raw/os150/mv2011_327_50400.raw', '/home/data/MV1112/raw/os150/mv2011_327_57600.raw', '/home/data/MV1112/raw/os150/mv2011_327_64800.raw', '/home/data/MV1112/raw/os150/mv2011_327_72000.raw', '/home/data/MV1112/raw/os150/mv2011_327_79200.raw', '/home/data/MV1112/raw/os150/mv2011_328_00000.raw', '/home/data/MV1112/raw/os150/mv2011_328_07200.raw', '/home/data/MV1112/raw/os150/mv2011_328_14400.raw', '/home/data/MV1112/raw/os150/mv2011_328_21600.raw', '/home/data/MV1112/raw/os150/mv2011_328_28800.raw', '/home/data/MV1112/raw/os150/mv2011_328_36000.raw', '/home/data/MV1112/raw/os150/mv2011_328_43200.raw', '/home/data/MV1112/raw/os150/mv2011_328_50400.raw', '/home/data/MV1112/raw/os150/mv2011_328_57600.raw', '/home/data/MV1112/raw/os150/mv2011_328_64800.raw', '/home/data/MV1112/raw/os150/mv2011_328_72000.raw', '/home/data/MV1112/raw/os150/mv2011_328_79200.raw', '/home/data/MV1112/raw/os150/mv2011_329_00000.raw', '/home/data/MV1112/raw/os150/mv2011_329_07200.raw', '/home/data/MV1112/raw/os150/mv2011_329_14400.raw', '/home/data/MV1112/raw/os150/mv2011_329_21600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 16 fixfile a_mv.gps frequency 150 gbin_style python gbindirbase /home/data/MV1112/gbin hcorr_inst ashtech help False hidedisplay True incremental True instname os150 jitter 15 max_BLKprofiles 399 max_search_depth 500 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_mv.gps overview False pgmin 50 ping_headcorr False pingtype nb post_headcorr None printformats png proc_engine python proc_yearbase 2011 progdir /home/currents/programs py_gbindirbase /home/data/MV1112/gbin rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_mv_refsm.asc sonar os150nb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2011 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2011-11-26 06:12:06,452 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:06,452 INFO quick_adcp step 1: set up editing files 2011-11-26 06:12:06,452 DEBUG quick_run executing commands from /home/data/MV1112/proc/os150nb/edit 2011-11-26 06:12:06,452 DEBUG quick_run setup.m exists. not replacing 2011-11-26 06:12:06,452 DEBUG quick_run asetup.m exists. not replacing 2011-11-26 06:12:06,452 DEBUG quick_run aflagit_setup.m exists. not replacing 2011-11-26 06:12:06,452 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:06,452 INFO quick_adcp step 2: scan files for time range 2011-11-26 06:12:06,452 INFO quick_adcp about to run numpy scan, requiring python gbins 2011-11-26 06:12:06,452 DEBUG quick_npy Starting: scanping 2011-11-26 06:12:06,730 DEBUG quick_npy Ending: scanping 2011-11-26 06:12:06,731 DEBUG quick_subs start_end_time 2011/11/03 13:51:19 to 2011/11/03 14:16:31 2011-11-26 06:12:06,731 DEBUG quick_subs dd0: 306.577303 dd1: 306.594803 2011-11-26 06:12:06,731 INFO quick_adcp in quick_adcp.py: after scan; look for database times in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:06,731 INFO quick_adcp looking for database with adcpdb/a_mv*.blk 2011-11-26 06:12:06,731 INFO quick_adcp database found: listing blocks 2011-11-26 06:12:06,732 DEBUG quick_subs removing a_mvdir.blk 2011-11-26 06:12:06,732 DEBUG quick_subs about to run mkblkdir 2011-11-26 06:12:06,732 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-11-26 06:12:06,732 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2011-11-26 06:12:06,743 DEBUG quick_subs database passes. 2011-11-26 06:12:06,743 DEBUG quick_subs start_end_time 2011/11/03 13:56:17 to 2011/11/26 05:38:37 2011-11-26 06:12:06,743 DEBUG quick_subs dd0: 306.580752 dd1: 329.235150 2011-11-26 06:12:06,744 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2011-11-26 06:12:06,744 DEBUG quick_adcp origdb_time_range is 2011/11/03 13:56:17 to 2011/11/26 05:38:37 2011-11-26 06:12:06,744 DEBUG quick_adcp (306.580752 to 329.235150) 2011-11-26 06:12:06,744 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:06,744 INFO quick_adcp step 3: generate averaged data... 2011-11-26 06:12:06,744 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2011-11-26 06:12:06,744 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:06,744 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/load 2011-11-26 06:12:06,744 DEBUG quick_setup running python command "run_pingavg_npy" 2011-11-26 06:12:06,744 DEBUG quick_npy Starting: pingavg 2011-11-26 06:12:06,746 DEBUG quick_npy singleping editing parameters: 2011-11-26 06:12:06,746 DEBUG quick_npy bigtarget_mab_window : 11 2011-11-26 06:12:06,746 DEBUG quick_npy rl_endbin : 20 2011-11-26 06:12:06,746 DEBUG quick_npy max_search_depth : 500 2011-11-26 06:12:06,746 DEBUG quick_npy cor_cutoff : 120 2011-11-26 06:12:06,746 DEBUG quick_npy ampfilt : 40 2011-11-26 06:12:06,747 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2011-11-26 06:12:06,747 DEBUG quick_npy rl_startbin : 2 2011-11-26 06:12:06,747 DEBUG quick_npy ecutoff : 1 2011-11-26 06:12:06,747 DEBUG quick_npy refavg_valcutoff : 1 2011-11-26 06:12:06,747 DEBUG quick_npy weakprof_percent : 30 2011-11-26 06:12:06,747 DEBUG quick_npy bigtarget_ampthresh : 55 2011-11-26 06:12:06,755 INFO pingavg Pingavg.run for time range 329.250003 to 329.256155 2011-11-26 06:12:06,779 DEBUG pingavg Chunk 1 of 1, 329.250003 to 329.256155 2011-11-26 06:12:06,780 DEBUG pingavg Nothing written 2011-11-26 06:12:06,780 DEBUG quick_npy wrote 0 averages 2011-11-26 06:12:06,780 DEBUG quick_npy Ending: pingavg 2011-11-26 06:12:06,780 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:06,780 INFO quick_adcp step 4: load averaged data (to database) 2011-11-26 06:12:06,781 DEBUG quick_subs in del_overlapping 2011-11-26 06:12:06,781 DEBUG quick_subs lastblock: 2011-11-26 06:12:06,781 DEBUG quick_subs 22 2011-11-26 06:12:06,781 DEBUG quick_subs lastcmd: 2011-11-26 06:12:06,781 DEBUG quick_subs 22 2011-11-26 06:12:06,781 DEBUG quick_subs delblks: 2011-11-26 06:12:06,781 DEBUG quick_subs [22] 2011-11-26 06:12:06,781 DEBUG quick_subs loadblks: 2011-11-26 06:12:06,781 DEBUG quick_subs [22] 2011-11-26 06:12:06,782 DEBUG quick_subs about to run mkblkdir 2011-11-26 06:12:06,782 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-11-26 06:12:06,782 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2011-11-26 06:12:06,793 DEBUG quick_subs database passes. 2011-11-26 06:12:06,793 DEBUG quick_subs start_end_time 2011/11/03 13:56:17 to 2011/11/26 00:23:37 2011-11-26 06:12:06,793 DEBUG quick_subs dd0: 306.580752 dd1: 329.016400 2011-11-26 06:12:06,794 DEBUG quick_run [22] 2011-11-26 06:12:06,794 DEBUG quick_run cmdlist 2011-11-26 06:12:06,794 DEBUG quick_run ['./ens_blk022.cmd'] 2011-11-26 06:12:06,795 INFO quick_run Warning: 1 files will be loaded; 22 already exist 2011-11-26 06:12:06,795 INFO quick_run Sat Nov 26 06:12:06 2011 2011-11-26 06:12:06,795 INFO quick_run about to load uhdas files 2011-11-26 06:12:06,795 INFO quick_run /home/data/MV1112/raw/os150/mv2011_306_49876.raw /home/data/MV1112/raw/os150/mv2011_306_50400.raw /home/data/MV1112/raw/os150/mv2011_306_57166.raw /home/data/MV1112/raw/os150/mv2011_306_57600.raw /home/data/MV1112/raw/os150/mv2011_306_64800.raw ... 2011-11-26 06:12:06,795 DEBUG quick_setup load/ldcodas.tmp exists 2011-11-26 06:12:06,795 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:06,795 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/load 2011-11-26 06:12:06,795 DEBUG quick_setup running python command "ldcodas" 2011-11-26 06:12:06,795 DEBUG quick_subs filling "thisload" timerange 2011-11-26 06:12:06,796 DEBUG quick_subs in ldcodas 2011-11-26 06:12:06,796 DEBUG quick_subs cmdlist: 2011-11-26 06:12:06,796 DEBUG quick_subs ['./ens_blk022.cmd'] 2011-11-26 06:12:06,796 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mv DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk022.cmd 2011-11-26 06:12:06,796 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/ldcodas ldcodas.tmp 2011-11-26 06:12:06,810 DEBUG quick_subs removing a_mvdir.blk 2011-11-26 06:12:06,811 DEBUG quick_subs about to run mkblkdir 2011-11-26 06:12:06,811 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-11-26 06:12:06,811 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2011-11-26 06:12:06,822 DEBUG quick_subs database passes. 2011-11-26 06:12:06,822 DEBUG quick_subs start_end_time 2011/11/03 13:56:17 to 2011/11/26 06:08:38 2011-11-26 06:12:06,822 DEBUG quick_subs dd0: 306.580752 dd1: 329.255995 2011-11-26 06:12:06,822 INFO quick_adcp loaded_time_range is 2011/11/03 13:56:17 to 2011/11/26 06:08:38 2011-11-26 06:12:06,822 INFO quick_adcp (306.580752 to 329.255995) 2011-11-26 06:12:06,822 INFO quick_adcp origdb_time_range is 2011/11/03 13:56:17 to 2011/11/26 05:38:37 2011-11-26 06:12:06,823 INFO quick_adcp (306.580752 to 329.235150) 2011-11-26 06:12:06,823 INFO quick_adcp thisload_time_range is 2011/11/26 00:28:38 to 2011/11/26 06:08:38 2011-11-26 06:12:06,823 INFO quick_adcp (329.019884 to 329.019884) 2011-11-26 06:12:06,823 INFO quick_adcp --------------------- 2011-11-26 06:12:06,823 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:06,823 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/adcpdb 2011-11-26 06:12:06,823 DEBUG quick_setup running python command "lst_conf" 2011-11-26 06:12:06,823 DEBUG quick_subs dbname: a_mv output: a_mv.cnh time_ranges: all 2011-11-26 06:12:06,823 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_conf lst_conf.tmp 2011-11-26 06:12:07,330 DEBUG quick_setup found (in edit/asetup.m): 2011-11-26 06:12:07,330 DEBUG quick_setup config.beamangle is 30 2011-11-26 06:12:07,330 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:07,330 INFO quick_adcp step 5: set up files for gautoedit.py 2011-11-26 06:12:07,331 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2011-11-26 06:12:07,331 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:07,331 INFO quick_adcp step 6: set up files for gautoedit.py 2011-11-26 06:12:07,331 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:07,331 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/edit 2011-11-26 06:12:07,331 DEBUG quick_setup running python command "setflags" 2011-11-26 06:12:07,331 DEBUG quick_subs dbname: ../adcpdb/a_mv pg_min: 50 set_range_bit time_ranges: all 2011-11-26 06:12:07,331 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2011-11-26 06:12:07,381 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:07,381 INFO quick_adcp step 7: get navigation 2011-11-26 06:12:07,381 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:07,381 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:07,382 DEBUG quick_setup running python command "catnav" 2011-11-26 06:12:07,384 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2011-11-26 06:12:07,384 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:07,384 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/cal/rotate 2011-11-26 06:12:07,384 DEBUG quick_setup running python command "lst_hdg" 2011-11-26 06:12:07,384 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2011-11-26 06:12:07,385 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_hdg lst_hdg.tmp 2011-11-26 06:12:07,418 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:07,419 INFO quick_adcp step 8: get heading correction 2011-11-26 06:12:07,419 DEBUG quick_run hcorr_inst is ashtech 2011-11-26 06:12:07,419 DEBUG quick_mpl Starting plot: hcorr 2011-11-26 06:12:07,477 DEBUG quick_mplplots found 22.675247 days of data 2011-11-26 06:12:07,477 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2011-11-26 06:12:07,477 DEBUG quick_mplplots printing 6 pages 2011-11-26 06:12:08,034 DEBUG quick_mpl Ending plot: hcorr 2011-11-26 06:12:08,095 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:08,096 INFO quick_adcp step 9: rotate velocities 2011-11-26 06:12:08,096 DEBUG quick_setup cal/rotate/norotate.tmp exists 2011-11-26 06:12:08,096 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:08,096 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/cal/rotate 2011-11-26 06:12:08,096 DEBUG quick_setup running python command "norotate" 2011-11-26 06:12:08,097 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. DB_NAME: ../../adcpdb/a_mv LOG_FILE: rotate.log TIME_RANGE: 2011/11/03 13:56:17 to 2011/11/26 06:08:38 OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2011-11-26 06:12:08,097 DEBUG quick_setup about to run echo "writing dummy rotate file" 2011-11-26 06:12:08,104 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:08,105 INFO quick_adcp step 10: nav steps: run adcpsect 2011-11-26 06:12:08,105 DEBUG quick_setup nav/as_nav.tmp exists 2011-11-26 06:12:08,105 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:08,105 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:08,105 DEBUG quick_setup running python command "as_nav" 2011-11-26 06:12:08,106 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/11/03 13:56:17 to 2011/11/26 06:08:38 /* the whole time range */ 2011-11-26 06:12:08,106 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2011-11-26 06:12:08,178 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:08,180 INFO quick_adcp step 11: nav steps: run refabs 2011-11-26 06:12:08,180 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:08,180 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:08,180 DEBUG quick_setup running python command "refabs" 2011-11-26 06:12:08,180 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-11-26 06:12:08,181 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2011-11-26 06:12:08,232 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:08,233 INFO quick_adcp step 12: nav steps: run smoothr for plots 2011-11-26 06:12:08,233 DEBUG quick_setup nav/smoothr.tmp exists 2011-11-26 06:12:08,233 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:08,233 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:08,233 DEBUG quick_setup running python command "smoothr" 2011-11-26 06:12:08,233 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-11-26 06:12:08,234 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2011-11-26 06:12:08,441 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:08,441 INFO quick_adcp step 13: nav steps: smooth navigation 2011-11-26 06:12:08,441 INFO quick_adcp about to run numpy refsm 2011-11-26 06:12:08,441 DEBUG quick_npy Starting: refsm 2011-11-26 06:12:08,623 INFO nav dtmin = -0.50 dtmax = 1.20 2011-11-26 06:12:08,814 DEBUG quick_npy Ending: refsm 2011-11-26 06:12:08,814 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:08,814 INFO quick_adcp step 14: nav steps: put smoothed nav into codasdb 2011-11-26 06:12:08,814 DEBUG quick_setup nav/putnav.tmp exists 2011-11-26 06:12:08,814 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:08,814 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:08,815 DEBUG quick_setup running python command "putnav" 2011-11-26 06:12:08,815 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: a_mv_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-11-26 06:12:08,815 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2011-11-26 06:12:08,897 INFO quick_adcp plotting navigation 2011-11-26 06:12:08,898 DEBUG quick_mpl Starting plot: nav 2011-11-26 06:12:09,206 DEBUG quick_mpl Ending plot: nav 2011-11-26 06:12:09,206 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:09,206 INFO quick_adcp step 15: nav steps: make reflayer plots 2011-11-26 06:12:09,206 DEBUG quick_mpl Starting plot: refl 2011-11-26 06:12:09,341 DEBUG quick_mplplots found 22.626615 days of data 2011-11-26 06:12:09,341 DEBUG quick_mplplots start day is 306.000000 2011-11-26 06:12:09,341 DEBUG quick_mplplots figures with 2.000000 days per page 2011-11-26 06:12:09,341 DEBUG quick_mplplots printing 12 pages 2011-11-26 06:12:09,341 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-11-26 06:12:09,341 INFO quick_mplplots startdd is 306.0 2011-11-26 06:12:09,341 INFO quick_mplplots dt is 2.0 2011-11-26 06:12:09,895 DEBUG quick_mpl Ending plot: refl 2011-11-26 06:12:09,895 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:09,895 INFO quick_adcp step 16: find profile flags 2011-11-26 06:12:09,895 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:09,895 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/edit 2011-11-26 06:12:09,896 DEBUG quick_setup running python command "run_autoedit_npy" 2011-11-26 06:12:09,896 DEBUG quick_npy Starting: autoedit 2011-11-26 06:12:10,132 DEBUG quick_npy Ending: autoedit 2011-11-26 06:12:10,132 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:10,132 INFO quick_adcp step 17: apply editing 2011-11-26 06:12:10,132 DEBUG quick_run starting in: /home/data/MV1112/proc/os150nb 2011-11-26 06:12:10,132 DEBUG quick_run executing commands from: edit 2011-11-26 06:12:10,133 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/badbin ../adcpdb/a_mv abadbin_tmp.asc 2011-11-26 06:12:10,143 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/set_lgb ../adcpdb/a_mv 30 2011-11-26 06:12:10,149 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2011-11-26 06:12:10,198 DEBUG quick_run changing directories back to /home/data/MV1112/proc/os150nb 2011-11-26 06:12:10,198 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:10,198 INFO quick_adcp step 18: run nav steps 2011-11-26 06:12:10,198 DEBUG quick_setup nav/as_nav.tmp exists 2011-11-26 06:12:10,198 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:10,199 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:10,199 DEBUG quick_setup running python command "as_nav" 2011-11-26 06:12:10,199 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/11/03 13:56:17 to 2011/11/26 06:08:38 /* the whole time range */ 2011-11-26 06:12:10,199 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2011-11-26 06:12:10,264 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:10,264 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:10,264 DEBUG quick_setup running python command "refabs" 2011-11-26 06:12:10,264 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-11-26 06:12:10,265 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2011-11-26 06:12:10,309 DEBUG quick_setup nav/smoothr.tmp exists 2011-11-26 06:12:10,309 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:10,309 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:10,309 DEBUG quick_setup running python command "smoothr" 2011-11-26 06:12:10,309 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-11-26 06:12:10,310 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2011-11-26 06:12:10,513 INFO quick_adcp running refsm, for reflayer plots 2011-11-26 06:12:10,513 DEBUG quick_npy Starting: refsm 2011-11-26 06:12:10,688 INFO nav dtmin = -0.50 dtmax = 1.20 2011-11-26 06:12:10,871 DEBUG quick_npy Ending: refsm 2011-11-26 06:12:10,871 DEBUG quick_setup nav/putnav.tmp exists 2011-11-26 06:12:10,872 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:10,872 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:10,872 DEBUG quick_setup running python command "putnav" 2011-11-26 06:12:10,872 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: a_mv_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-11-26 06:12:10,872 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2011-11-26 06:12:10,953 DEBUG quick_mpl Starting plot: nav 2011-11-26 06:12:11,261 DEBUG quick_mpl Ending plot: nav 2011-11-26 06:12:11,261 DEBUG quick_mpl Starting plot: refl 2011-11-26 06:12:11,396 DEBUG quick_mplplots found 22.626615 days of data 2011-11-26 06:12:11,397 DEBUG quick_mplplots start day is 306.000000 2011-11-26 06:12:11,397 DEBUG quick_mplplots figures with 2.000000 days per page 2011-11-26 06:12:11,397 DEBUG quick_mplplots printing 12 pages 2011-11-26 06:12:11,397 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-11-26 06:12:11,397 INFO quick_mplplots startdd is 306.0 2011-11-26 06:12:11,397 INFO quick_mplplots dt is 2.0 2011-11-26 06:12:11,947 DEBUG quick_mpl Ending plot: refl 2011-11-26 06:12:11,947 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:11,947 INFO quick_adcp step 19: plot temperature 2011-11-26 06:12:11,948 DEBUG quick_setup edit/lst_temp.tmp exists 2011-11-26 06:12:11,948 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:11,948 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/edit 2011-11-26 06:12:11,948 DEBUG quick_setup running python command "lst_temp" 2011-11-26 06:12:11,948 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv.tem step_size= 1 year_base= 2011 time_ranges: all 2011-11-26 06:12:11,948 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_temp lst_temp.tmp 2011-11-26 06:12:11,987 DEBUG quick_mpl Starting plot: temp 2011-11-26 06:12:12,033 DEBUG quick_mplplots plotting 6251 points 2011-11-26 06:12:12,253 DEBUG quick_mpl Ending plot: temp 2011-11-26 06:12:12,253 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:12,253 INFO quick_adcp step 20: run calibration steps 2011-11-26 06:12:12,253 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2011-11-26 06:12:12,253 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:12,253 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/cal/botmtrk 2011-11-26 06:12:12,254 DEBUG quick_setup running python command "lst_btrk" 2011-11-26 06:12:12,254 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: a_mv.btm step_size= 1 year_base= 2011 time_ranges: 2011/11/03 13:56:17 to 2011/11/26 06:08:38 /* whole time range */ 2011-11-26 06:12:12,254 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_btrk lst_btrk.tmp 2011-11-26 06:12:12,271 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2011-11-26 06:12:12,272 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:12,272 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/cal/botmtrk 2011-11-26 06:12:12,272 DEBUG quick_setup running python command "refabsbt" 2011-11-26 06:12:12,272 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.btm fix_file: ../../nav/a_mv.gps output: a_mv.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2011-11-26 06:12:12,272 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabsbt refabsbt.tmp 2011-11-26 06:12:12,278 DEBUG quick_mpl Starting plot: btcal 2011-11-26 06:12:12,652 DEBUG quick_mpl Ending plot: btcal 2011-11-26 06:12:12,653 DEBUG quick_setup nav/as_nav.tmp exists 2011-11-26 06:12:12,653 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:12,653 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/nav 2011-11-26 06:12:12,653 DEBUG quick_setup running python command "as_nav" 2011-11-26 06:12:12,653 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/11/03 13:56:17 to 2011/11/26 06:08:38 /* the whole time range */ 2011-11-26 06:12:12,653 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2011-11-26 06:12:12,719 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2011-11-26 06:12:12,719 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:12,719 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/cal/watertrk 2011-11-26 06:12:12,719 DEBUG quick_setup running python command "timslip" 2011-11-26 06:12:12,719 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mv.gps reference_file: ../../nav/a_mv.nav output_file: a_mv_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2011-11-26 06:12:12,719 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timslip timslip.tmp 2011-11-26 06:12:12,741 DEBUG quick_mpl Starting plot: wtcal 2011-11-26 06:12:12,744 DEBUG quick_mplplots Found 89 calibration points 2011-11-26 06:12:13,405 DEBUG quick_mpl Ending plot: wtcal 2011-11-26 06:12:13,405 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:13,405 INFO quick_adcp step 21: adjust GPS position 2011-11-26 06:12:13,405 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:13,405 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/cal/watertrk 2011-11-26 06:12:13,405 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2011-11-26 06:12:13,405 DEBUG quick_npy Starting: guess_xducerxy 2011-11-26 06:12:13,606 DEBUG quick_npy Ending: guess_xducerxy 2011-11-26 06:12:13,606 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:13,606 INFO quick_adcp step 22: extract matlab "allbins" 2011-11-26 06:12:13,607 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2011-11-26 06:12:13,607 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:13,607 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/vector 2011-11-26 06:12:13,607 DEBUG quick_setup running python command "timegrid" 2011-11-26 06:12:13,607 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_mv.tmp 2011-11-26 06:12:13,618 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:13,618 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/vector 2011-11-26 06:12:13,618 DEBUG quick_setup running python command "as_vect" 2011-11-26 06:12:13,618 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_vect.tmp 2011-11-26 06:12:13,694 DEBUG quick_asect done making vector matfiles 2011-11-26 06:12:13,694 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:13,694 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/contour 2011-11-26 06:12:13,694 DEBUG quick_setup running python command "timegrid" 2011-11-26 06:12:13,695 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_mv.tmp 2011-11-26 06:12:13,708 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:13,708 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/contour 2011-11-26 06:12:13,708 DEBUG quick_setup running python command "as_cont" 2011-11-26 06:12:13,708 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_cont.tmp 2011-11-26 06:12:13,836 DEBUG quick_setup starting in /home/data/MV1112/proc/os150nb 2011-11-26 06:12:13,836 DEBUG quick_setup executing commands from /home/data/MV1112/proc/os150nb/contour 2011-11-26 06:12:13,836 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_mv 2011-11-26 06:12:14,248 DEBUG quick_asect done running getmat with "allbins" 2011-11-26 06:12:14,248 INFO quick_adcp --------------------------------------------- 2011-11-26 06:12:14,248 INFO quick_adcp step 23: write "cruise_info.txt" 2011-11-26 06:12:14,273 INFO root copying NOFIG to /home/adcp/www/figures/os150nb_hcorr_plot.png 2011-11-26 06:12:14,273 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os150nb_hcorr_plot_thumb.png 2011-11-26 06:12:14,273 DEBUG root matfile is contour/contour_uv.mat 2011-11-26 06:12:14,281 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os150nb_cont_uv.mat 2011-11-26 06:12:14,281 DEBUG root matfile is vector/vector_uv.mat 2011-11-26 06:12:14,282 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os150nb_vect_uv.mat 2011-11-26 06:12:14,282 DEBUG root matfile is contour/contour_xy.mat 2011-11-26 06:12:14,283 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os150nb_cont_xy.mat 2011-11-26 06:12:14,283 DEBUG root matfile is vector/vector_xy.mat 2011-11-26 06:12:14,283 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os150nb_vect_xy.mat 2011-11-26 06:12:14,283 DEBUG root about to copy file edit/a_mv.tem to /home/adcp/www/data/os150nb_temp.asc 2011-11-26 06:12:14,284 INFO root copying edit/a_mv.tem to /home/adcp/www/data/os150nb_temp.asc 2011-11-26 06:12:15,154 DEBUG root about to copy netcdf file /home/data/MV1112/proc/os150nb/contour/os150nb.nc to /home/adcp/www/data/os150nb.nc 2011-11-26 06:12:15,175 INFO root copying edit/a_mv.tem to /home/adcp/www/data/os150nb.nc 2011-11-26 06:12:15,209 INFO root generating pingstats for os150nb 2011-11-26 06:12:15,209 INFO root Ending quick_adcp.py