2011-05-20 12:20:23,793 DEBUG root about to write control file parameters to --yearbase 2011 --pingtype nb --cfgbase w1105c_constable --cruisename w1105c_constable --instclass os --instname os75 --dbname a_we --datatype uhdas --datadir /home/data/w1105c_constable/raw/os75 --cfgpath /home/data/w1105c_constable/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --npycalc all --mplplots all 2011-05-20 12:20:23,794 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2011-05-20 12:20:23,796 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2011-05-20 12:20:23,796 DEBUG quick_adcp progdir = /home/currents/programs 2011-05-20 12:20:23,797 DEBUG quick_adcp binos = lnx 2011-05-20 12:20:23,797 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2011-05-20 12:20:23,797 DEBUG quick_setup yearbase is 2011, proc_yearbase is 2011 2011-05-20 12:20:23,797 DEBUG quick_setup numpy calculations to run: refsm 2011-05-20 12:20:23,798 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2011-05-20 12:20:23,798 DEBUG quick_setup processing data logged with uhdas: 2011-05-20 12:20:23,798 DEBUG quick_setup datatype is uhdas 2011-05-20 12:20:23,798 DEBUG quick_setup pingtype is nb 2011-05-20 12:20:23,798 DEBUG quick_setup instclass is os 2011-05-20 12:20:23,798 DEBUG quick_setup no post-processing heading correction will be used 2011-05-20 12:20:23,799 DEBUG quick_setup transducer depth set in *_cfg.m file 2011-05-20 12:20:23,816 DEBUG quick_setup found (in edit/asetup.m): 2011-05-20 12:20:23,816 DEBUG quick_setup config.beamangle is 30 2011-05-20 12:20:23,817 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'w1105c_constable',... 'cfgpath' , '/home/data/w1105c_constable/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2011-05-20 12:20:23,817 DEBUG quick_setup ------- starting Matlab engine ------- 2011-05-20 12:20:23,817 DEBUG quick_setup ['/home/currents/programs/matlab'] 2011-05-20 12:20:23,821 DEBUG call_matlab starting to wait for initial prompt 2011-05-20 12:20:24,718 DEBUG call_matlab received initial prompt 2011-05-20 12:20:24,923 DEBUG quick_adcp cwd is /home/data/w1105c_constable/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-05-20 12:20:24,923 DEBUG quick_adcp original fix file is a_we.gps 2011-05-20 12:20:24,923 DEBUG quick_adcp smoothed nav file is a_we_refsm.asc 2011-05-20 12:20:24,924 DEBUG quick_asect extracting matlab files for os75, nb pings 2011-05-20 12:20:24,927 DEBUG quick_subs found 10 files using wildcard expansion from "/home/data/w1105c_constable/raw/os75/*.raw" 2011-05-20 12:20:24,927 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/w1105c_constable/raw/os75/we2011_138_63740.raw /home/data/w1105c_constable/raw/os75/we2011_138_64800.raw /home/data/w1105c_constable/raw/os75/we2011_138_72000.raw /home/data/w1105c_constable/raw/os75/we2011_138_79200.raw /home/data/w1105c_constable/raw/os75/we2011_139_00000.raw /home/data/w1105c_constable/raw/os75/we2011_139_20981.raw /home/data/w1105c_constable/raw/os75/we2011_139_21600.raw /home/data/w1105c_constable/raw/os75/we2011_139_28800.raw /home/data/w1105c_constable/raw/os75/we2011_139_36000.raw /home/data/w1105c_constable/raw/os75/we2011_139_43200.raw 2011-05-20 12:20:24,927 DEBUG quick_adcp LASTFILES invoked. using only 10 files from end of filelist 2011-05-20 12:20:24,928 DEBUG quick_adcp using delblks = 1 2011-05-20 12:20:24,928 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/w1105c_constable/raw/os75/we2011_138_63740.raw /home/data/w1105c_constable/raw/os75/we2011_138_64800.raw /home/data/w1105c_constable/raw/os75/we2011_138_72000.raw /home/data/w1105c_constable/raw/os75/we2011_138_79200.raw /home/data/w1105c_constable/raw/os75/we2011_139_00000.raw /home/data/w1105c_constable/raw/os75/we2011_139_20981.raw /home/data/w1105c_constable/raw/os75/we2011_139_21600.raw /home/data/w1105c_constable/raw/os75/we2011_139_28800.raw /home/data/w1105c_constable/raw/os75/we2011_139_36000.raw /home/data/w1105c_constable/raw/os75/we2011_139_43200.raw 2011-05-20 12:20:24,929 DEBUG quick_adcp Fri May 20 12:20:24 2011 running quick_adcp.py as follows: --cntfile /home/data/w1105c_constable/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_we cbasename contour dbname a_we dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 16 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_we allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase w1105c_constable cfgpath /home/data/w1105c_constable/proc/os75nb/config cntfile /home/data/w1105c_constable/proc/os75nb/os75nb_qpy.cnt commands None cruisename w1105c_constable data_def vmadcp.def datadir /home/data/w1105c_constable/raw/os75 datafile_glob *.raw datatype uhdas dbname a_we dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/w1105c_constable/raw/os75/we2011_138_63740.raw', '/home/data/w1105c_constable/raw/os75/we2011_138_64800.raw', '/home/data/w1105c_constable/raw/os75/we2011_138_72000.raw', '/home/data/w1105c_constable/raw/os75/we2011_138_79200.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_00000.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_20981.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_21600.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_28800.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_36000.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_43200.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 16 fixfile a_we.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'w1105c_constable',... 'cfgpath' , '/home/data/w1105c_constable/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_we.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2011 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/w1105c_constable/raw/os75/we2011_138_63740.raw', '/home/data/w1105c_constable/raw/os75/we2011_138_64800.raw', '/home/data/w1105c_constable/raw/os75/we2011_138_72000.raw', '/home/data/w1105c_constable/raw/os75/we2011_138_79200.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_00000.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_20981.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_21600.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_28800.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_36000.raw', '/home/data/w1105c_constable/raw/os75/we2011_139_43200.raw'] setup_info False skip_avg True smfile a_we_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2011 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-05-20 12:20:24,929 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2011-05-20 12:20:24,930 DEBUG quick_run scanning files for time ranges... 2011-05-20 12:20:24,930 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb/scan 2011-05-20 12:20:24,930 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/scan 2011-05-20 12:20:24,930 DEBUG quick_setup running python command "scanraw" 2011-05-20 12:20:24,930 DEBUG call_matlab --> clear all 2011-05-20 12:20:24,935 DEBUG call_matlab <-- >> 2011-05-20 12:20:24,935 DEBUG call_matlab --> close all 2011-05-20 12:20:24,992 DEBUG call_matlab <-- >> 2011-05-20 12:20:24,992 DEBUG call_matlab --> cd /home/data/w1105c_constable/proc/os75nb/scan 2011-05-20 12:20:24,994 DEBUG call_matlab <-- >> 2011-05-20 12:20:24,995 DEBUG call_matlab --> scan_tmp 2011-05-20 12:20:26,107 DEBUG call_matlab <-- getting config files from "/home/data/w1105c_constable/proc/os75nb/config" running "w1105c_constable_cfg.m" running "w1105c_constable_proc.m" writing scan info to a_we.scn >> 2011-05-20 12:20:26,108 DEBUG quick_run writing time range from a_we.scn to a_we.tr 2011-05-20 12:20:26,108 DEBUG quick_run getting scan time range 2011-05-20 12:20:26,108 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,108 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/scan 2011-05-20 12:20:26,108 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,109 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,110 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,112 DEBUG quick_subs start_end_time 2011/05/19 17:42:23 to 2011/05/20 12:17:43 2011-05-20 12:20:26,112 DEBUG quick_subs dd0: 138.737766 dd1: 139.512303 2011-05-20 12:20:26,113 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,113 DEBUG quick_adcp looking for database with adcpdb/a_we*.blk 2011-05-20 12:20:26,114 DEBUG quick_adcp database found: listing blocks 2011-05-20 12:20:26,115 DEBUG quick_subs removing a_wedir.blk 2011-05-20 12:20:26,115 DEBUG quick_subs about to run mkblkdir 2011-05-20 12:20:26,116 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-05-20 12:20:26,116 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-05-20 12:20:26,131 DEBUG quick_subs database passes. 2011-05-20 12:20:26,132 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2011-05-20 12:20:26,132 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,132 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,133 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,133 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,133 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,134 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 11:47:12 2011-05-20 12:20:26,134 DEBUG quick_subs dd0: 138.741308 dd1: 139.491111 2011-05-20 12:20:26,135 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2011-05-20 12:20:26,135 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,135 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,135 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,136 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,136 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,137 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 11:47:12 2011-05-20 12:20:26,137 DEBUG quick_subs dd0: 138.741308 dd1: 139.491111 2011-05-20 12:20:26,137 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2011-05-20 12:20:26,138 DEBUG quick_adcp origdb_time_range is 2011/05/19 17:47:29 to 2011/05/20 11:47:12 2011-05-20 12:20:26,138 DEBUG quick_adcp (138.741308 to 139.491111) 2011-05-20 12:20:26,139 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2011-05-20 12:20:26,139 DEBUG quick_subs getting current (remaining after deletion) database times 2011-05-20 12:20:26,140 DEBUG quick_subs ['adcpdb/a_we001.blk', 'adcpdb/a_wedir.blk', 'adcpdb/a_we002.blk'] 2011-05-20 12:20:26,140 DEBUG quick_subs length is 3 2011-05-20 12:20:26,140 DEBUG quick_subs removing a_wedir.blk 2011-05-20 12:20:26,141 DEBUG quick_subs about to run mkblkdir 2011-05-20 12:20:26,141 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-05-20 12:20:26,142 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-05-20 12:20:26,153 DEBUG quick_subs database passes. 2011-05-20 12:20:26,153 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2011-05-20 12:20:26,154 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,154 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,154 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,154 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,155 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,155 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 11:47:12 2011-05-20 12:20:26,155 DEBUG quick_subs dd0: 138.741308 dd1: 139.491111 2011-05-20 12:20:26,156 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,156 DEBUG quick_subs reading time range 2011-05-20 12:20:26,156 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 11:47:12 2011-05-20 12:20:26,157 DEBUG quick_subs dd0: 138.741308 dd1: 139.491111 2011-05-20 12:20:26,157 INFO quick_subs Fri May 20 12:20:26 2011 2011-05-20 12:20:26,157 INFO quick_subs checking database time range by listblk 2011-05-20 12:20:26,158 DEBUG quick_subs removing a_wedir.blk 2011-05-20 12:20:26,158 DEBUG quick_subs about to run mkblkdir 2011-05-20 12:20:26,158 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-05-20 12:20:26,159 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-05-20 12:20:26,172 DEBUG quick_subs database passes. 2011-05-20 12:20:26,172 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2011-05-20 12:20:26,173 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,173 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,174 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,174 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,174 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,175 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 11:47:12 2011-05-20 12:20:26,175 DEBUG quick_subs dd0: 138.741308 dd1: 139.491111 2011-05-20 12:20:26,182 INFO quick_subs found line /* 0 n= 95 a_we001.blk */ 2011/05/19 17:47:29 to 2011/05/20 01:45:31 2011-05-20 12:20:26,183 INFO quick_subs found line /* 1 n= 70 a_we002.blk */ 2011/05/20 05:54:47 to 2011/05/20 11:47:12 2011-05-20 12:20:26,184 INFO quick_subs scan data start at 138.7377662 2011-05-20 12:20:26,184 INFO quick_subs scan time range: 2011/05/19 17:42:23 to 2011/05/20 12:17:43 2011-05-20 12:20:26,184 INFO quick_subs codasdb ends at 139.4911111 (2011/05/20 11:47:12) 2011-05-20 12:20:26,185 DEBUG quick_subs ... changed dirs, in /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,186 DEBUG quick_subs deleting these files: ['a_we002.blk'] 2011-05-20 12:20:26,186 DEBUG quick_subs getting current (remaining after deletion) database times 2011-05-20 12:20:26,187 DEBUG quick_subs ['adcpdb/a_we001.blk'] 2011-05-20 12:20:26,187 DEBUG quick_subs length is 1 2011-05-20 12:20:26,187 DEBUG quick_subs about to run mkblkdir 2011-05-20 12:20:26,188 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-05-20 12:20:26,188 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-05-20 12:20:26,203 DEBUG quick_subs database passes. 2011-05-20 12:20:26,203 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2011-05-20 12:20:26,203 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,204 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,204 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,204 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,205 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,205 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 01:45:31 2011-05-20 12:20:26,206 DEBUG quick_subs dd0: 138.741308 dd1: 139.073275 2011-05-20 12:20:26,206 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,207 DEBUG quick_subs reading time range 2011-05-20 12:20:26,207 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 01:45:31 2011-05-20 12:20:26,207 DEBUG quick_subs dd0: 138.741308 dd1: 139.073275 2011-05-20 12:20:26,208 DEBUG quick_subs codas database currently goes from 2011/05/19 17:47:29 to 2011/05/20 01:45:31 2011-05-20 12:20:26,208 DEBUG quick_subs (138.741308 to 139.073275) 2011-05-20 12:20:26,208 DEBUG quick_subs 001 2011-05-20 12:20:26,210 DEBUG quick_subs found existing ens_blk files: 001 002 2011-05-20 12:20:26,210 DEBUG quick_subs checked: loaded blkstrs: ['001'] 2011-05-20 12:20:26,210 DEBUG quick_subs checked: unloaded blkstrs: ['002'] 2011-05-20 12:20:26,211 DEBUG quick_subs first unloaded file is load/ens_blk002.cmd 2011-05-20 12:20:26,212 DEBUG quick_subs data goes from 2011/05/20 05:54:47 to 2011/05/20 12:17:43 2011-05-20 12:20:26,212 DEBUG quick_subs (139.246377 to 139.512303) 2011-05-20 12:20:26,212 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/w1105c_constable/raw/os75/we2011_138_63740.raw /home/data/w1105c_constable/raw/os75/we2011_138_64800.raw /home/data/w1105c_constable/raw/os75/we2011_138_72000.raw /home/data/w1105c_constable/raw/os75/we2011_138_79200.raw /home/data/w1105c_constable/raw/os75/we2011_139_00000.raw /home/data/w1105c_constable/raw/os75/we2011_139_20981.raw /home/data/w1105c_constable/raw/os75/we2011_139_21600.raw /home/data/w1105c_constable/raw/os75/we2011_139_28800.raw /home/data/w1105c_constable/raw/os75/we2011_139_36000.raw /home/data/w1105c_constable/raw/os75/we2011_139_43200.raw 2011-05-20 12:20:26,213 INFO quick_run Fri May 20 12:20:26 2011 2011-05-20 12:20:26,213 INFO quick_run about to load uhdas files 2011-05-20 12:20:26,213 INFO quick_run /home/data/w1105c_constable/raw/os75/we2011_138_63740.raw /home/data/w1105c_constable/raw/os75/we2011_138_64800.raw /home/data/w1105c_constable/raw/os75/we2011_138_72000.raw /home/data/w1105c_constable/raw/os75/we2011_138_79200.raw /home/data/w1105c_constable/raw/os75/we2011_139_00000.raw /home/data/w1105c_constable/raw/os75/we2011_139_20981.raw /home/data/w1105c_constable/raw/os75/we2011_139_21600.raw /home/data/w1105c_constable/raw/os75/we2011_139_28800.raw /home/data/w1105c_constable/raw/os75/we2011_139_36000.raw /home/data/w1105c_constable/raw/os75/we2011_139_43200.raw 2011-05-20 12:20:26,214 DEBUG quick_setup load/ldcodas.tmp exists 2011-05-20 12:20:26,214 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,214 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/load 2011-05-20 12:20:26,215 DEBUG quick_setup running python command "ldcodas" 2011-05-20 12:20:26,215 DEBUG quick_subs in /home/data/w1105c_constable/proc/os75nb/load 2011-05-20 12:20:26,215 DEBUG quick_subs found block strings: ['001'] 2011-05-20 12:20:26,217 DEBUG quick_subs found cmd blk strings: ['001', '002'] 2011-05-20 12:20:26,219 DEBUG quick_subs starttime is 2011/05/20 05:54:47 2011-05-20 12:20:26,220 DEBUG quick_subs RESETTING thisload_time_range 2011-05-20 12:20:26,221 DEBUG quick_subs time range of data to be loaded: 2011/05/20 05:54:47 to 2011/05/20 12:17:43 2011-05-20 12:20:26,222 DEBUG quick_subs data startdd 139.246377 data enddd 139.512303 2011-05-20 12:20:26,222 DEBUG quick_subs about to load from these cmd files ['ens_blk002.cmd'] 2011-05-20 12:20:26,223 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_we DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk002.cmd 2011-05-20 12:20:26,223 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2011-05-20 12:20:26,263 DEBUG quick_subs removing a_wedir.blk 2011-05-20 12:20:26,264 DEBUG quick_subs about to run mkblkdir 2011-05-20 12:20:26,264 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-05-20 12:20:26,265 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-05-20 12:20:26,279 DEBUG quick_subs database passes. 2011-05-20 12:20:26,279 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2011-05-20 12:20:26,280 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,280 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,280 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,281 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,281 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,282 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 12:17:21 2011-05-20 12:20:26,282 DEBUG quick_subs dd0: 138.741308 dd1: 139.512049 2011-05-20 12:20:26,282 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2011-05-20 12:20:26,283 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,283 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,283 DEBUG quick_setup running python command "get_time_range" 2011-05-20 12:20:26,283 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-05-20 12:20:26,284 DEBUG quick_subs extracting time range 2011-05-20 12:20:26,284 DEBUG quick_subs start_end_time 2011/05/19 17:47:29 to 2011/05/20 12:17:21 2011-05-20 12:20:26,285 DEBUG quick_subs dd0: 138.741308 dd1: 139.512049 2011-05-20 12:20:26,285 DEBUG quick_adcp loaded_time_range is 2011/05/19 17:47:29 to 2011/05/20 12:17:21 2011-05-20 12:20:26,285 DEBUG quick_adcp (138.741308 to 139.512049) 2011-05-20 12:20:26,286 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,286 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/adcpdb 2011-05-20 12:20:26,286 DEBUG quick_setup running python command "lst_conf" 2011-05-20 12:20:26,286 DEBUG quick_subs dbname: a_we output: a_we.cnh time_ranges: all 2011-05-20 12:20:26,287 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2011-05-20 12:20:26,301 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2011-05-20 12:20:26,302 DEBUG quick_run executing commands from /home/data/w1105c_constable/proc/os75nb/edit 2011-05-20 12:20:26,302 DEBUG quick_run setup.m exists. not replacing 2011-05-20 12:20:26,302 DEBUG quick_run asetup.m exists. not replacing 2011-05-20 12:20:26,302 DEBUG quick_run aflagit_setup.m exists. not replacing 2011-05-20 12:20:26,303 DEBUG quick_run ------------ step 4: run setflags ------------- 2011-05-20 12:20:26,303 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,303 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/edit 2011-05-20 12:20:26,303 DEBUG quick_setup running python command "setflags" 2011-05-20 12:20:26,304 DEBUG quick_subs dbname: ../adcpdb/a_we pg_min: 50 set_range_bit time_ranges: all 2011-05-20 12:20:26,304 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-05-20 12:20:26,314 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2011-05-20 12:20:26,315 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,315 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:26,315 DEBUG quick_setup running python command "catnav" 2011-05-20 12:20:26,317 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2011-05-20 12:20:26,317 DEBUG quick_run hcorr_inst is ashtech 2011-05-20 12:20:26,317 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2011-05-20 12:20:26,318 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:26,318 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/cal/rotate 2011-05-20 12:20:26,318 DEBUG quick_setup running python command "lst_hdg" 2011-05-20 12:20:26,318 DEBUG quick_subs dbname: ../../adcpdb/a_we output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2011-05-20 12:20:26,319 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2011-05-20 12:20:26,328 DEBUG quick_mpl Starting plot: hcorr 2011-05-20 12:20:26,338 DEBUG quick_mplplots found 0.770739 days of data 2011-05-20 12:20:26,338 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2011-05-20 12:20:26,339 DEBUG quick_mplplots printing 1 pages 2011-05-20 12:20:27,041 DEBUG quick_mpl Ending plot: hcorr 2011-05-20 12:20:27,041 DEBUG quick_run ------------ step 7: rotate ------------- 2011-05-20 12:20:27,041 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:27,041 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/cal/rotate 2011-05-20 12:20:27,042 DEBUG quick_setup running python command "rotated" 2011-05-20 12:20:27,044 DEBUG quick_subs last rotated time from log file: 2011/05/20 11:47:33 2011-05-20 12:20:27,044 DEBUG quick_subs time range of currently loaded data: 2011/05/19 17:47:29 to 2011/05/20 12:17:21 2011-05-20 12:20:27,044 DEBUG quick_subs (138.741308 to 139.512049) 2011-05-20 12:20:27,044 DEBUG quick_setup cal/rotate/rotate.tmp exists 2011-05-20 12:20:27,045 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:27,045 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/cal/rotate 2011-05-20 12:20:27,045 DEBUG quick_setup running python command "rotate" 2011-05-20 12:20:27,045 DEBUG quick_subs DB_NAME: ../../adcpdb/a_we LOG_FILE: rotate.log TIME_RANGE: 2011/05/20 05:54:47 to 2011/05/20 12:17:43 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2011-05-20 12:20:27,045 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2011-05-20 12:20:27,053 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-05-20 12:20:27,053 DEBUG quick_setup nav/as_nav.tmp exists 2011-05-20 12:20:27,053 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:27,053 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:27,054 DEBUG quick_setup running python command "as_nav" 2011-05-20 12:20:27,054 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/05/19 17:47:29 to 2011/05/20 12:17:21 /* the whole time range */ 2011-05-20 12:20:27,054 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-05-20 12:20:27,065 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-05-20 12:20:27,066 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:27,066 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:27,066 DEBUG quick_setup running python command "refabs" 2011-05-20 12:20:27,066 DEBUG quick_subs fix_file_type: simple reference_file: a_we.nav fix_file: a_we.gps output: a_we.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-05-20 12:20:27,066 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-05-20 12:20:27,075 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-05-20 12:20:27,075 DEBUG quick_setup nav/smoothr.tmp exists 2011-05-20 12:20:27,076 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:27,076 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:27,076 DEBUG quick_setup running python command "smoothr" 2011-05-20 12:20:27,076 DEBUG quick_subs reference_file: a_we.nav refabs_output: a_we.ref output: a_we.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-05-20 12:20:27,077 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-05-20 12:20:27,098 DEBUG quick_adcp about to run numpy refsm 2011-05-20 12:20:27,098 DEBUG quick_npy Starting: refsm 2011-05-20 12:20:27,119 INFO nav dtmin = -0.49 dtmax = 0.49 2011-05-20 12:20:27,227 DEBUG quick_npy Ending: refsm 2011-05-20 12:20:27,227 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-05-20 12:20:27,227 DEBUG quick_setup nav/putnav.tmp exists 2011-05-20 12:20:27,228 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:27,228 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:27,228 DEBUG quick_setup running python command "putnav" 2011-05-20 12:20:27,228 DEBUG quick_subs dbname: ../adcpdb/a_we position_file: a_we_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-05-20 12:20:27,229 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-05-20 12:20:27,240 DEBUG quick_adcp plotting navigation 2011-05-20 12:20:27,240 DEBUG quick_mpl Starting plot: nav 2011-05-20 12:20:27,836 DEBUG quick_mpl Ending plot: nav 2011-05-20 12:20:27,837 DEBUG quick_mpl Starting plot: refl 2011-05-20 12:20:27,850 DEBUG quick_mplplots found 0.763753 days of data 2011-05-20 12:20:27,851 DEBUG quick_mplplots start day is 138.000000 2011-05-20 12:20:27,851 DEBUG quick_mplplots figures with 2.000000 days per page 2011-05-20 12:20:27,851 DEBUG quick_mplplots printing 1 pages 2011-05-20 12:20:27,851 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-05-20 12:20:27,851 INFO quick_mplplots startdd is 138.0 2011-05-20 12:20:27,851 INFO quick_mplplots dt is 2.0 2011-05-20 12:20:28,467 DEBUG quick_mpl Ending plot: refl 2011-05-20 12:20:28,467 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2011-05-20 12:20:28,467 DEBUG quick_run find profile flags ------------ *** ------------- 2011-05-20 12:20:28,468 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:28,468 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/edit 2011-05-20 12:20:28,468 DEBUG quick_setup running python command "aedit" 2011-05-20 12:20:29,794 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2011-05-20 12:20:29,795 DEBUG quick_run starting in: /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:29,795 DEBUG quick_run executing commands from: edit 2011-05-20 12:20:29,798 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_we abottom_tmp.asc 2011-05-20 12:20:29,805 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_we abadprf_tmp.asc 2011-05-20 12:20:29,812 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_we abadbin_tmp.asc 2011-05-20 12:20:29,826 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_we 30 2011-05-20 12:20:29,834 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-05-20 12:20:29,843 DEBUG quick_run changing directories back to /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:29,843 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2011-05-20 12:20:29,844 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-05-20 12:20:29,844 DEBUG quick_setup nav/as_nav.tmp exists 2011-05-20 12:20:29,844 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:29,844 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:29,844 DEBUG quick_setup running python command "as_nav" 2011-05-20 12:20:29,845 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/05/19 17:47:29 to 2011/05/20 12:17:21 /* the whole time range */ 2011-05-20 12:20:29,845 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-05-20 12:20:29,856 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-05-20 12:20:29,857 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:29,857 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:29,857 DEBUG quick_setup running python command "refabs" 2011-05-20 12:20:29,857 DEBUG quick_subs fix_file_type: simple reference_file: a_we.nav fix_file: a_we.gps output: a_we.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-05-20 12:20:29,858 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-05-20 12:20:29,867 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-05-20 12:20:29,867 DEBUG quick_setup nav/smoothr.tmp exists 2011-05-20 12:20:29,868 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:29,868 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:29,868 DEBUG quick_setup running python command "smoothr" 2011-05-20 12:20:29,868 DEBUG quick_subs reference_file: a_we.nav refabs_output: a_we.ref output: a_we.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-05-20 12:20:29,868 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-05-20 12:20:29,890 DEBUG quick_adcp running refsm 2011-05-20 12:20:29,891 DEBUG quick_npy Starting: refsm 2011-05-20 12:20:29,912 INFO nav dtmin = -0.49 dtmax = 0.49 2011-05-20 12:20:29,941 DEBUG quick_npy Ending: refsm 2011-05-20 12:20:29,942 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-05-20 12:20:29,942 DEBUG quick_setup nav/putnav.tmp exists 2011-05-20 12:20:29,942 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:29,942 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:29,942 DEBUG quick_setup running python command "putnav" 2011-05-20 12:20:29,943 DEBUG quick_subs dbname: ../adcpdb/a_we position_file: a_we_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-05-20 12:20:29,943 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-05-20 12:20:29,954 DEBUG quick_mpl Starting plot: nav 2011-05-20 12:20:30,712 DEBUG quick_mpl Ending plot: nav 2011-05-20 12:20:30,712 DEBUG quick_mpl Starting plot: refl 2011-05-20 12:20:30,734 DEBUG quick_mplplots found 0.763753 days of data 2011-05-20 12:20:30,734 DEBUG quick_mplplots start day is 138.000000 2011-05-20 12:20:30,735 DEBUG quick_mplplots figures with 2.000000 days per page 2011-05-20 12:20:30,735 DEBUG quick_mplplots printing 1 pages 2011-05-20 12:20:30,735 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-05-20 12:20:30,735 INFO quick_mplplots startdd is 138.0 2011-05-20 12:20:30,736 INFO quick_mplplots dt is 2.0 2011-05-20 12:20:31,654 DEBUG quick_mpl Ending plot: refl 2011-05-20 12:20:31,654 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2011-05-20 12:20:31,654 DEBUG quick_setup edit/lst_temp.tmp exists 2011-05-20 12:20:31,655 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:31,655 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/edit 2011-05-20 12:20:31,655 DEBUG quick_setup running python command "lst_temp" 2011-05-20 12:20:31,655 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we.tem step_size= 1 year_base= 2011 time_ranges: all 2011-05-20 12:20:31,655 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2011-05-20 12:20:31,664 DEBUG quick_mpl Starting plot: temp 2011-05-20 12:20:31,670 DEBUG quick_mplplots plotting 171 points 2011-05-20 12:20:32,118 DEBUG quick_mpl Ending plot: temp 2011-05-20 12:20:32,119 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2011-05-20 12:20:32,119 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2011-05-20 12:20:32,119 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,119 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/cal/botmtrk 2011-05-20 12:20:32,119 DEBUG quick_setup running python command "lst_btrk" 2011-05-20 12:20:32,120 DEBUG quick_subs dbname: ../../adcpdb/a_we output: a_we.btm step_size= 1 year_base= 2011 time_ranges: 2011/05/19 17:47:29 to 2011/05/20 12:17:21 /* whole time range */ 2011-05-20 12:20:32,120 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2011-05-20 12:20:32,127 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2011-05-20 12:20:32,128 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,128 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/cal/botmtrk 2011-05-20 12:20:32,128 DEBUG quick_setup running python command "refabsbt" 2011-05-20 12:20:32,128 DEBUG quick_subs fix_file_type: simple reference_file: a_we.btm fix_file: ../../nav/a_we.gps output: a_we.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2011-05-20 12:20:32,129 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2011-05-20 12:20:32,135 DEBUG quick_mpl Starting plot: btcal 2011-05-20 12:20:32,136 DEBUG quick_mplplots No data in a_we.btm 2011-05-20 12:20:32,137 DEBUG quick_mplplots Returning from Btplot with no output 2011-05-20 12:20:32,137 DEBUG quick_mpl Ending plot: btcal 2011-05-20 12:20:32,137 DEBUG quick_setup nav/as_nav.tmp exists 2011-05-20 12:20:32,137 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,137 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/nav 2011-05-20 12:20:32,138 DEBUG quick_setup running python command "as_nav" 2011-05-20 12:20:32,138 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/05/19 17:47:29 to 2011/05/20 12:17:21 /* the whole time range */ 2011-05-20 12:20:32,138 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-05-20 12:20:32,150 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2011-05-20 12:20:32,150 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,151 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/cal/watertrk 2011-05-20 12:20:32,151 DEBUG quick_setup running python command "timslip" 2011-05-20 12:20:32,151 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_we.gps reference_file: ../../nav/a_we.nav output_file: a_we_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2011-05-20 12:20:32,151 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2011-05-20 12:20:32,159 DEBUG quick_mpl Starting plot: wtcal 2011-05-20 12:20:32,162 DEBUG quick_mplplots Found 3 calibration points 2011-05-20 12:20:32,163 DEBUG quick_mplplots Only 0 valid points found; quitting 2011-05-20 12:20:32,163 DEBUG quick_mpl Ending plot: wtcal 2011-05-20 12:20:32,163 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2011-05-20 12:20:32,164 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,164 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/vector 2011-05-20 12:20:32,164 DEBUG quick_setup running python command "timegrid" 2011-05-20 12:20:32,164 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_we.tmp 2011-05-20 12:20:32,171 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,172 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/vector 2011-05-20 12:20:32,172 DEBUG quick_setup running python command "as_vect" 2011-05-20 12:20:32,172 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2011-05-20 12:20:32,185 DEBUG quick_asect done making vector matfiles 2011-05-20 12:20:32,185 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,185 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/contour 2011-05-20 12:20:32,185 DEBUG quick_setup running python command "timegrid" 2011-05-20 12:20:32,186 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_we.tmp 2011-05-20 12:20:32,193 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,193 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/contour 2011-05-20 12:20:32,194 DEBUG quick_setup running python command "as_cont" 2011-05-20 12:20:32,194 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2011-05-20 12:20:32,213 DEBUG quick_setup starting in /home/data/w1105c_constable/proc/os75nb 2011-05-20 12:20:32,214 DEBUG quick_setup executing commands from /home/data/w1105c_constable/proc/os75nb/contour 2011-05-20 12:20:32,214 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_we 2011-05-20 12:20:32,236 DEBUG quick_asect done running getmat with "allbins" 2011-05-20 12:20:32,286 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2011-05-20 12:20:32,287 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2011-05-20 12:20:32,287 DEBUG root matfile is contour/contour_uv.mat 2011-05-20 12:20:32,288 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2011-05-20 12:20:32,288 DEBUG root matfile is vector/vector_uv.mat 2011-05-20 12:20:32,288 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2011-05-20 12:20:32,288 DEBUG root matfile is contour/contour_xy.mat 2011-05-20 12:20:32,289 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2011-05-20 12:20:32,289 DEBUG root matfile is vector/vector_xy.mat 2011-05-20 12:20:32,290 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2011-05-20 12:20:32,294 DEBUG root about to copy file edit/a_we.tem to /home/adcp/www/data/os75nb_temp.asc 2011-05-20 12:20:32,295 INFO root copying edit/a_we.tem to /home/adcp/www/data/os75nb_temp.asc 2011-05-20 12:20:32,296 INFO root Ending quick_adcp.py 2011-05-20 12:20:32,346 DEBUG quick_setup killed matlab engine