2010-10-25 16:13:31,836 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase w1010c_moum --cruisename w1010c_moum --instclass os --instname os75 --dbname a_we --datatype uhdas --datadir /home/data/w1010c_moum/raw/os75 --cfgpath /home/data/w1010c_moum/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --npycalc all --mplplots all 2010-10-25 16:13:31,836 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2010-10-25 16:13:31,839 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-10-25 16:13:31,839 DEBUG quick_adcp progdir = /home/currents/programs 2010-10-25 16:13:31,840 DEBUG quick_adcp binos = lnx 2010-10-25 16:13:31,840 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-10-25 16:13:31,840 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-10-25 16:13:31,840 DEBUG quick_setup numpy calculations to run: refsm 2010-10-25 16:13:31,840 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-10-25 16:13:31,841 DEBUG quick_setup processing data logged with uhdas: 2010-10-25 16:13:31,841 DEBUG quick_setup datatype is uhdas 2010-10-25 16:13:31,841 DEBUG quick_setup pingtype is nb 2010-10-25 16:13:31,841 DEBUG quick_setup instclass is os 2010-10-25 16:13:31,841 DEBUG quick_setup no post-processing heading correction will be used 2010-10-25 16:13:31,841 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-10-25 16:13:31,859 DEBUG quick_setup found (in edit/asetup.m): 2010-10-25 16:13:31,860 DEBUG quick_setup config.beamangle is 30 2010-10-25 16:13:31,860 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'w1010c_moum',... 'cfgpath' , '/home/data/w1010c_moum/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-10-25 16:13:31,860 DEBUG quick_setup ------- starting Matlab engine ------- 2010-10-25 16:13:31,860 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-10-25 16:13:31,864 DEBUG call_matlab starting to wait for initial prompt 2010-10-25 16:13:32,725 DEBUG call_matlab received initial prompt 2010-10-25 16:13:32,929 DEBUG quick_adcp cwd is /home/data/w1010c_moum/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-25 16:13:32,929 DEBUG quick_adcp original fix file is a_we.gps 2010-10-25 16:13:32,930 DEBUG quick_adcp smoothed nav file is a_we_refsm.asc 2010-10-25 16:13:32,930 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-10-25 16:13:32,937 DEBUG quick_subs found 32 files using wildcard expansion from "/home/data/w1010c_moum/raw/os75/*.raw" 2010-10-25 16:13:32,937 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/w1010c_moum/raw/os75/we2010_295_07964.raw /home/data/w1010c_moum/raw/os75/we2010_295_14400.raw /home/data/w1010c_moum/raw/os75/we2010_295_21600.raw /home/data/w1010c_moum/raw/os75/we2010_295_28800.raw /home/data/w1010c_moum/raw/os75/we2010_295_36000.raw /home/data/w1010c_moum/raw/os75/we2010_295_43200.raw /home/data/w1010c_moum/raw/os75/we2010_295_50400.raw /home/data/w1010c_moum/raw/os75/we2010_295_57600.raw /home/data/w1010c_moum/raw/os75/we2010_295_64800.raw /home/data/w1010c_moum/raw/os75/we2010_295_72000.raw /home/data/w1010c_moum/raw/os75/we2010_295_79200.raw /home/data/w1010c_moum/raw/os75/we2010_296_00000.raw /home/data/w1010c_moum/raw/os75/we2010_296_07200.raw /home/data/w1010c_moum/raw/os75/we2010_296_14400.raw /home/data/w1010c_moum/raw/os75/we2010_296_21600.raw /home/data/w1010c_moum/raw/os75/we2010_296_28800.raw /home/data/w1010c_moum/raw/os75/we2010_296_36000.raw /home/data/w1010c_moum/raw/os75/we2010_296_43200.raw /home/data/w1010c_moum/raw/os75/we2010_296_50400.raw /home/data/w1010c_moum/raw/os75/we2010_296_57600.raw /home/data/w1010c_moum/raw/os75/we2010_296_64800.raw /home/data/w1010c_moum/raw/os75/we2010_296_72000.raw /home/data/w1010c_moum/raw/os75/we2010_296_79200.raw /home/data/w1010c_moum/raw/os75/we2010_297_00000.raw /home/data/w1010c_moum/raw/os75/we2010_297_07200.raw /home/data/w1010c_moum/raw/os75/we2010_297_14400.raw /home/data/w1010c_moum/raw/os75/we2010_297_21600.raw /home/data/w1010c_moum/raw/os75/we2010_297_28800.raw /home/data/w1010c_moum/raw/os75/we2010_297_36000.raw /home/data/w1010c_moum/raw/os75/we2010_297_43200.raw /home/data/w1010c_moum/raw/os75/we2010_297_50400.raw /home/data/w1010c_moum/raw/os75/we2010_297_57600.raw 2010-10-25 16:13:32,938 DEBUG quick_adcp LASTFILES invoked. using only 32 files from end of filelist 2010-10-25 16:13:32,938 DEBUG quick_adcp using delblks = 1 2010-10-25 16:13:32,938 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/w1010c_moum/raw/os75/we2010_295_07964.raw /home/data/w1010c_moum/raw/os75/we2010_295_14400.raw /home/data/w1010c_moum/raw/os75/we2010_295_21600.raw /home/data/w1010c_moum/raw/os75/we2010_295_28800.raw /home/data/w1010c_moum/raw/os75/we2010_295_36000.raw /home/data/w1010c_moum/raw/os75/we2010_295_43200.raw /home/data/w1010c_moum/raw/os75/we2010_295_50400.raw /home/data/w1010c_moum/raw/os75/we2010_295_57600.raw /home/data/w1010c_moum/raw/os75/we2010_295_64800.raw /home/data/w1010c_moum/raw/os75/we2010_295_72000.raw /home/data/w1010c_moum/raw/os75/we2010_295_79200.raw /home/data/w1010c_moum/raw/os75/we2010_296_00000.raw /home/data/w1010c_moum/raw/os75/we2010_296_07200.raw /home/data/w1010c_moum/raw/os75/we2010_296_14400.raw /home/data/w1010c_moum/raw/os75/we2010_296_21600.raw /home/data/w1010c_moum/raw/os75/we2010_296_28800.raw /home/data/w1010c_moum/raw/os75/we2010_296_36000.raw /home/data/w1010c_moum/raw/os75/we2010_296_43200.raw /home/data/w1010c_moum/raw/os75/we2010_296_50400.raw /home/data/w1010c_moum/raw/os75/we2010_296_57600.raw /home/data/w1010c_moum/raw/os75/we2010_296_64800.raw /home/data/w1010c_moum/raw/os75/we2010_296_72000.raw /home/data/w1010c_moum/raw/os75/we2010_296_79200.raw /home/data/w1010c_moum/raw/os75/we2010_297_00000.raw /home/data/w1010c_moum/raw/os75/we2010_297_07200.raw /home/data/w1010c_moum/raw/os75/we2010_297_14400.raw /home/data/w1010c_moum/raw/os75/we2010_297_21600.raw /home/data/w1010c_moum/raw/os75/we2010_297_28800.raw /home/data/w1010c_moum/raw/os75/we2010_297_36000.raw /home/data/w1010c_moum/raw/os75/we2010_297_43200.raw /home/data/w1010c_moum/raw/os75/we2010_297_50400.raw /home/data/w1010c_moum/raw/os75/we2010_297_57600.raw 2010-10-25 16:13:32,939 DEBUG quick_adcp Mon Oct 25 16:13:32 2010 running quick_adcp.py as follows: --cntfile /home/data/w1010c_moum/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_we cbasename contour dbname a_we dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 28 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_we allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase w1010c_moum cfgpath /home/data/w1010c_moum/proc/os75nb/config cntfile /home/data/w1010c_moum/proc/os75nb/os75nb_qpy.cnt commands None cruisename w1010c_moum data_def vmadcp.def datadir /home/data/w1010c_moum/raw/os75 datafile_glob *.raw datatype uhdas dbname a_we dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/w1010c_moum/raw/os75/we2010_295_07964.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_14400.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_21600.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_28800.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_36000.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_43200.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_50400.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_57600.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_64800.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_72000.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_79200.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_00000.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_07200.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_14400.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_21600.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_28800.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_36000.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_43200.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_50400.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_57600.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_64800.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_72000.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_79200.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_00000.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_07200.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_14400.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_21600.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_28800.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_36000.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_43200.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_50400.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 28 fixfile a_we.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'w1010c_moum',... 'cfgpath' , '/home/data/w1010c_moum/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_we.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2010 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/w1010c_moum/raw/os75/we2010_295_07964.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_14400.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_21600.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_28800.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_36000.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_43200.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_50400.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_57600.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_64800.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_72000.raw', '/home/data/w1010c_moum/raw/os75/we2010_295_79200.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_00000.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_07200.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_14400.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_21600.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_28800.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_36000.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_43200.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_50400.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_57600.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_64800.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_72000.raw', '/home/data/w1010c_moum/raw/os75/we2010_296_79200.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_00000.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_07200.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_14400.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_21600.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_28800.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_36000.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_43200.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_50400.raw', '/home/data/w1010c_moum/raw/os75/we2010_297_57600.raw'] setup_info False skip_avg True smfile a_we_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-25 16:13:32,940 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-10-25 16:13:32,940 DEBUG quick_run scanning files for time ranges... 2010-10-25 16:13:32,940 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb/scan 2010-10-25 16:13:32,940 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/scan 2010-10-25 16:13:32,941 DEBUG quick_setup running python command "scanraw" 2010-10-25 16:13:32,941 DEBUG call_matlab --> clear all 2010-10-25 16:13:32,948 DEBUG call_matlab <-- >> 2010-10-25 16:13:32,948 DEBUG call_matlab --> close all 2010-10-25 16:13:33,006 DEBUG call_matlab <-- >> 2010-10-25 16:13:33,006 DEBUG call_matlab --> cd /home/data/w1010c_moum/proc/os75nb/scan 2010-10-25 16:13:33,008 DEBUG call_matlab <-- >> 2010-10-25 16:13:33,009 DEBUG call_matlab --> scan_tmp 2010-10-25 16:13:34,006 DEBUG call_matlab <-- getting config files from "/home/data/w1010c_moum/proc/os75nb/config" running "w1010c_moum_cfg.m" running "w1010c_moum_proc.m" writing scan info to a_we.scn >> 2010-10-25 16:13:34,006 DEBUG quick_run writing time range from a_we.scn to a_we.tr 2010-10-25 16:13:34,007 DEBUG quick_run getting scan time range 2010-10-25 16:13:34,007 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,007 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/scan 2010-10-25 16:13:34,007 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,008 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,009 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,011 DEBUG quick_subs start_end_time 2010/10/23 02:12:49 to 2010/10/25 16:09:56 2010-10-25 16:13:34,011 DEBUG quick_subs dd0: 295.092234 dd1: 297.673565 2010-10-25 16:13:34,012 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,012 DEBUG quick_adcp looking for database with adcpdb/a_we*.blk 2010-10-25 16:13:34,013 DEBUG quick_adcp database found: listing blocks 2010-10-25 16:13:34,014 DEBUG quick_subs removing a_wedir.blk 2010-10-25 16:13:34,014 DEBUG quick_subs about to run mkblkdir 2010-10-25 16:13:34,014 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-25 16:13:34,015 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-25 16:13:34,029 DEBUG quick_subs database passes. 2010-10-25 16:13:34,029 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2010-10-25 16:13:34,030 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,030 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,030 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,031 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,032 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,032 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 15:39:28 2010-10-25 16:13:34,032 DEBUG quick_subs dd0: 295.095787 dd1: 297.652407 2010-10-25 16:13:34,033 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2010-10-25 16:13:34,033 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,033 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,033 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,034 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,034 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,035 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 15:39:28 2010-10-25 16:13:34,035 DEBUG quick_subs dd0: 295.095787 dd1: 297.652407 2010-10-25 16:13:34,035 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-10-25 16:13:34,036 DEBUG quick_adcp origdb_time_range is 2010/10/23 02:17:56 to 2010/10/25 15:39:28 2010-10-25 16:13:34,036 DEBUG quick_adcp (295.095787 to 297.652407) 2010-10-25 16:13:34,037 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-10-25 16:13:34,037 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-25 16:13:34,038 DEBUG quick_subs ['adcpdb/a_we003.blk', 'adcpdb/a_we004.blk', 'adcpdb/a_we001.blk', 'adcpdb/a_wedir.blk', 'adcpdb/a_we002.blk', 'adcpdb/a_we005.blk'] 2010-10-25 16:13:34,038 DEBUG quick_subs length is 6 2010-10-25 16:13:34,038 DEBUG quick_subs removing a_wedir.blk 2010-10-25 16:13:34,040 DEBUG quick_subs about to run mkblkdir 2010-10-25 16:13:34,040 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-25 16:13:34,040 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-25 16:13:34,059 DEBUG quick_subs database passes. 2010-10-25 16:13:34,081 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2010-10-25 16:13:34,082 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,082 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,082 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,083 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,083 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,084 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 15:39:28 2010-10-25 16:13:34,084 DEBUG quick_subs dd0: 295.095787 dd1: 297.652407 2010-10-25 16:13:34,085 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,085 DEBUG quick_subs reading time range 2010-10-25 16:13:34,086 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 15:39:28 2010-10-25 16:13:34,086 DEBUG quick_subs dd0: 295.095787 dd1: 297.652407 2010-10-25 16:13:34,087 INFO quick_subs Mon Oct 25 16:13:34 2010 2010-10-25 16:13:34,087 INFO quick_subs checking database time range by listblk 2010-10-25 16:13:34,087 DEBUG quick_subs removing a_wedir.blk 2010-10-25 16:13:34,088 DEBUG quick_subs about to run mkblkdir 2010-10-25 16:13:34,088 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-25 16:13:34,088 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-25 16:13:34,100 DEBUG quick_subs database passes. 2010-10-25 16:13:34,100 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2010-10-25 16:13:34,101 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,101 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,102 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,102 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,102 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,103 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 15:39:28 2010-10-25 16:13:34,103 DEBUG quick_subs dd0: 295.095787 dd1: 297.652407 2010-10-25 16:13:34,106 INFO quick_subs found line /* 0 n= 146 a_we001.blk */ 2010/10/23 02:17:56 to 2010/10/23 14:29:07 2010-10-25 16:13:34,106 INFO quick_subs found line /* 1 n= 146 a_we002.blk */ 2010/10/23 14:34:09 to 2010/10/24 02:51:12 2010-10-25 16:13:34,106 INFO quick_subs found line /* 2 n= 146 a_we003.blk */ 2010/10/24 02:56:14 to 2010/10/24 15:08:08 2010-10-25 16:13:34,107 INFO quick_subs found line /* 3 n= 146 a_we004.blk */ 2010/10/24 15:13:10 to 2010/10/25 03:24:13 2010-10-25 16:13:34,107 INFO quick_subs found line /* 4 n= 146 a_we005.blk */ 2010/10/25 03:29:16 to 2010/10/25 15:39:28 2010-10-25 16:13:34,107 INFO quick_subs scan data start at 295.0922338 2010-10-25 16:13:34,108 INFO quick_subs scan time range: 2010/10/23 02:12:49 to 2010/10/25 16:09:56 2010-10-25 16:13:34,108 INFO quick_subs codasdb ends at 297.6524074 (2010/10/25 15:39:28) 2010-10-25 16:13:34,108 DEBUG quick_subs ... changed dirs, in /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,109 DEBUG quick_subs deleting these files: ['a_we005.blk'] 2010-10-25 16:13:34,111 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-25 16:13:34,111 DEBUG quick_subs ['adcpdb/a_we003.blk', 'adcpdb/a_we004.blk', 'adcpdb/a_we001.blk', 'adcpdb/a_we002.blk'] 2010-10-25 16:13:34,112 DEBUG quick_subs length is 4 2010-10-25 16:13:34,113 DEBUG quick_subs about to run mkblkdir 2010-10-25 16:13:34,113 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-25 16:13:34,115 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-25 16:13:34,125 DEBUG quick_subs database passes. 2010-10-25 16:13:34,126 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2010-10-25 16:13:34,126 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,126 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,126 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,127 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,127 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,127 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 03:24:13 2010-10-25 16:13:34,128 DEBUG quick_subs dd0: 295.095787 dd1: 297.141817 2010-10-25 16:13:34,128 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,128 DEBUG quick_subs reading time range 2010-10-25 16:13:34,128 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 03:24:13 2010-10-25 16:13:34,128 DEBUG quick_subs dd0: 295.095787 dd1: 297.141817 2010-10-25 16:13:34,129 DEBUG quick_subs codas database currently goes from 2010/10/23 02:17:56 to 2010/10/25 03:24:13 2010-10-25 16:13:34,129 DEBUG quick_subs (295.095787 to 297.141817) 2010-10-25 16:13:34,129 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004 2010-10-25 16:13:34,130 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 2010-10-25 16:13:34,130 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004'] 2010-10-25 16:13:34,131 DEBUG quick_subs checked: unloaded blkstrs: ['005', '006'] 2010-10-25 16:13:34,131 DEBUG quick_subs first unloaded file is load/ens_blk005.cmd 2010-10-25 16:13:34,132 DEBUG quick_subs data goes from 2010/10/25 03:29:16 to 2010/10/25 16:09:56 2010-10-25 16:13:34,132 DEBUG quick_subs (297.145324 to 297.673565) 2010-10-25 16:13:34,133 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/w1010c_moum/raw/os75/we2010_295_07964.raw /home/data/w1010c_moum/raw/os75/we2010_295_14400.raw /home/data/w1010c_moum/raw/os75/we2010_295_21600.raw /home/data/w1010c_moum/raw/os75/we2010_295_28800.raw /home/data/w1010c_moum/raw/os75/we2010_295_36000.raw /home/data/w1010c_moum/raw/os75/we2010_295_43200.raw /home/data/w1010c_moum/raw/os75/we2010_295_50400.raw /home/data/w1010c_moum/raw/os75/we2010_295_57600.raw /home/data/w1010c_moum/raw/os75/we2010_295_64800.raw /home/data/w1010c_moum/raw/os75/we2010_295_72000.raw /home/data/w1010c_moum/raw/os75/we2010_295_79200.raw /home/data/w1010c_moum/raw/os75/we2010_296_00000.raw /home/data/w1010c_moum/raw/os75/we2010_296_07200.raw /home/data/w1010c_moum/raw/os75/we2010_296_14400.raw /home/data/w1010c_moum/raw/os75/we2010_296_21600.raw /home/data/w1010c_moum/raw/os75/we2010_296_28800.raw /home/data/w1010c_moum/raw/os75/we2010_296_36000.raw /home/data/w1010c_moum/raw/os75/we2010_296_43200.raw /home/data/w1010c_moum/raw/os75/we2010_296_50400.raw /home/data/w1010c_moum/raw/os75/we2010_296_57600.raw /home/data/w1010c_moum/raw/os75/we2010_296_64800.raw /home/data/w1010c_moum/raw/os75/we2010_296_72000.raw /home/data/w1010c_moum/raw/os75/we2010_296_79200.raw /home/data/w1010c_moum/raw/os75/we2010_297_00000.raw /home/data/w1010c_moum/raw/os75/we2010_297_07200.raw /home/data/w1010c_moum/raw/os75/we2010_297_14400.raw /home/data/w1010c_moum/raw/os75/we2010_297_21600.raw /home/data/w1010c_moum/raw/os75/we2010_297_28800.raw /home/data/w1010c_moum/raw/os75/we2010_297_36000.raw /home/data/w1010c_moum/raw/os75/we2010_297_43200.raw /home/data/w1010c_moum/raw/os75/we2010_297_50400.raw /home/data/w1010c_moum/raw/os75/we2010_297_57600.raw 2010-10-25 16:13:34,133 INFO quick_run Mon Oct 25 16:13:34 2010 2010-10-25 16:13:34,133 INFO quick_run about to load uhdas files 2010-10-25 16:13:34,133 INFO quick_run /home/data/w1010c_moum/raw/os75/we2010_295_07964.raw /home/data/w1010c_moum/raw/os75/we2010_295_14400.raw /home/data/w1010c_moum/raw/os75/we2010_295_21600.raw /home/data/w1010c_moum/raw/os75/we2010_295_28800.raw /home/data/w1010c_moum/raw/os75/we2010_295_36000.raw /home/data/w1010c_moum/raw/os75/we2010_295_43200.raw /home/data/w1010c_moum/raw/os75/we2010_295_50400.raw /home/data/w1010c_moum/raw/os75/we2010_295_57600.raw /home/data/w1010c_moum/raw/os75/we2010_295_64800.raw /home/data/w1010c_moum/raw/os75/we2010_295_72000.raw /home/data/w1010c_moum/raw/os75/we2010_295_79200.raw /home/data/w1010c_moum/raw/os75/we2010_296_00000.raw /home/data/w1010c_moum/raw/os75/we2010_296_07200.raw /home/data/w1010c_moum/raw/os75/we2010_296_14400.raw /home/data/w1010c_moum/raw/os75/we2010_296_21600.raw /home/data/w1010c_moum/raw/os75/we2010_296_28800.raw /home/data/w1010c_moum/raw/os75/we2010_296_36000.raw /home/data/w1010c_moum/raw/os75/we2010_296_43200.raw /home/data/w1010c_moum/raw/os75/we2010_296_50400.raw /home/data/w1010c_moum/raw/os75/we2010_296_57600.raw /home/data/w1010c_moum/raw/os75/we2010_296_64800.raw /home/data/w1010c_moum/raw/os75/we2010_296_72000.raw /home/data/w1010c_moum/raw/os75/we2010_296_79200.raw /home/data/w1010c_moum/raw/os75/we2010_297_00000.raw /home/data/w1010c_moum/raw/os75/we2010_297_07200.raw /home/data/w1010c_moum/raw/os75/we2010_297_14400.raw /home/data/w1010c_moum/raw/os75/we2010_297_21600.raw /home/data/w1010c_moum/raw/os75/we2010_297_28800.raw /home/data/w1010c_moum/raw/os75/we2010_297_36000.raw /home/data/w1010c_moum/raw/os75/we2010_297_43200.raw /home/data/w1010c_moum/raw/os75/we2010_297_50400.raw /home/data/w1010c_moum/raw/os75/we2010_297_57600.raw 2010-10-25 16:13:34,133 DEBUG quick_setup load/ldcodas.tmp exists 2010-10-25 16:13:34,133 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,134 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/load 2010-10-25 16:13:34,134 DEBUG quick_setup running python command "ldcodas" 2010-10-25 16:13:34,134 DEBUG quick_subs in /home/data/w1010c_moum/proc/os75nb/load 2010-10-25 16:13:34,134 DEBUG quick_subs found block strings: ['001', '002', '003', '004'] 2010-10-25 16:13:34,135 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006'] 2010-10-25 16:13:34,136 DEBUG quick_subs starttime is 2010/10/25 03:29:16 2010-10-25 16:13:34,136 DEBUG quick_subs RESETTING thisload_time_range 2010-10-25 16:13:34,137 DEBUG quick_subs time range of data to be loaded: 2010/10/25 03:29:16 to 2010/10/25 16:09:56 2010-10-25 16:13:34,137 DEBUG quick_subs data startdd 297.145324 data enddd 297.673565 2010-10-25 16:13:34,137 DEBUG quick_subs about to load from these cmd files ['ens_blk005.cmd', 'ens_blk006.cmd'] 2010-10-25 16:13:34,137 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_we DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk005.cmd ./ens_blk006.cmd 2010-10-25 16:13:34,138 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-10-25 16:13:34,188 DEBUG quick_subs removing a_wedir.blk 2010-10-25 16:13:34,189 DEBUG quick_subs about to run mkblkdir 2010-10-25 16:13:34,189 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-25 16:13:34,189 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-25 16:13:34,199 DEBUG quick_subs database passes. 2010-10-25 16:13:34,200 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2010-10-25 16:13:34,200 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,200 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,201 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,201 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,201 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,202 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 16:09:43 2010-10-25 16:13:34,202 DEBUG quick_subs dd0: 295.095787 dd1: 297.673414 2010-10-25 16:13:34,202 DEBUG quick_subs writing time range from a_we.lst to a_we.tr 2010-10-25 16:13:34,202 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,202 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,203 DEBUG quick_setup running python command "get_time_range" 2010-10-25 16:13:34,203 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-25 16:13:34,203 DEBUG quick_subs extracting time range 2010-10-25 16:13:34,203 DEBUG quick_subs start_end_time 2010/10/23 02:17:56 to 2010/10/25 16:09:43 2010-10-25 16:13:34,204 DEBUG quick_subs dd0: 295.095787 dd1: 297.673414 2010-10-25 16:13:34,204 DEBUG quick_adcp loaded_time_range is 2010/10/23 02:17:56 to 2010/10/25 16:09:43 2010-10-25 16:13:34,204 DEBUG quick_adcp (295.095787 to 297.673414) 2010-10-25 16:13:34,204 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,205 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/adcpdb 2010-10-25 16:13:34,205 DEBUG quick_setup running python command "lst_conf" 2010-10-25 16:13:34,205 DEBUG quick_subs dbname: a_we output: a_we.cnh time_ranges: all 2010-10-25 16:13:34,205 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-10-25 16:13:34,217 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-10-25 16:13:34,218 DEBUG quick_run executing commands from /home/data/w1010c_moum/proc/os75nb/edit 2010-10-25 16:13:34,218 DEBUG quick_run setup.m exists. not replacing 2010-10-25 16:13:34,218 DEBUG quick_run asetup.m exists. not replacing 2010-10-25 16:13:34,218 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-10-25 16:13:34,219 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-10-25 16:13:34,219 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,219 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/edit 2010-10-25 16:13:34,219 DEBUG quick_setup running python command "setflags" 2010-10-25 16:13:34,220 DEBUG quick_subs dbname: ../adcpdb/a_we pg_min: 50 set_range_bit time_ranges: all 2010-10-25 16:13:34,220 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-25 16:13:34,241 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-10-25 16:13:34,242 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,242 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:34,242 DEBUG quick_setup running python command "catnav" 2010-10-25 16:13:34,244 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-10-25 16:13:34,244 DEBUG quick_run hcorr_inst is ashtech 2010-10-25 16:13:34,244 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-10-25 16:13:34,244 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,245 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/cal/rotate 2010-10-25 16:13:34,245 DEBUG quick_setup running python command "lst_hdg" 2010-10-25 16:13:34,245 DEBUG quick_subs dbname: ../../adcpdb/a_we output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-10-25 16:13:34,245 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-10-25 16:13:34,258 DEBUG quick_mpl Starting plot: hcorr 2010-10-25 16:13:34,281 DEBUG quick_mplplots found 2.577628 days of data 2010-10-25 16:13:34,282 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-10-25 16:13:34,282 DEBUG quick_mplplots printing 1 pages 2010-10-25 16:13:34,955 DEBUG quick_mpl Ending plot: hcorr 2010-10-25 16:13:34,955 DEBUG quick_run ------------ step 7: rotate ------------- 2010-10-25 16:13:34,955 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,955 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/cal/rotate 2010-10-25 16:13:34,956 DEBUG quick_setup running python command "rotated" 2010-10-25 16:13:34,966 DEBUG quick_subs last rotated time from log file: 2010/10/25 15:39:41 2010-10-25 16:13:34,967 DEBUG quick_subs time range of currently loaded data: 2010/10/23 02:17:56 to 2010/10/25 16:09:43 2010-10-25 16:13:34,967 DEBUG quick_subs (295.095787 to 297.673414) 2010-10-25 16:13:34,967 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-10-25 16:13:34,967 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,968 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/cal/rotate 2010-10-25 16:13:34,968 DEBUG quick_setup running python command "rotate" 2010-10-25 16:13:34,968 DEBUG quick_subs DB_NAME: ../../adcpdb/a_we LOG_FILE: rotate.log TIME_RANGE: 2010/10/25 03:29:16 to 2010/10/25 16:09:56 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-10-25 16:13:34,968 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-10-25 16:13:34,991 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-25 16:13:34,991 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-25 16:13:34,992 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:34,992 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:34,992 DEBUG quick_setup running python command "as_nav" 2010-10-25 16:13:34,992 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/23 02:17:56 to 2010/10/25 16:09:43 /* the whole time range */ 2010-10-25 16:13:34,993 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-25 16:13:35,018 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-25 16:13:35,019 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:35,019 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:35,019 DEBUG quick_setup running python command "refabs" 2010-10-25 16:13:35,020 DEBUG quick_subs fix_file_type: simple reference_file: a_we.nav fix_file: a_we.gps output: a_we.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-25 16:13:35,020 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-25 16:13:35,038 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-25 16:13:35,039 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-25 16:13:35,039 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:35,039 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:35,039 DEBUG quick_setup running python command "smoothr" 2010-10-25 16:13:35,039 DEBUG quick_subs reference_file: a_we.nav refabs_output: a_we.ref output: a_we.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-25 16:13:35,040 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-25 16:13:35,113 DEBUG quick_adcp about to run numpy refsm 2010-10-25 16:13:35,114 DEBUG quick_npy Starting: refsm 2010-10-25 16:13:35,166 INFO nav dtmin = -0.50 dtmax = 0.50 2010-10-25 16:13:35,327 DEBUG quick_npy Ending: refsm 2010-10-25 16:13:35,327 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-25 16:13:35,328 DEBUG quick_setup nav/putnav.tmp exists 2010-10-25 16:13:35,328 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:35,328 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:35,328 DEBUG quick_setup running python command "putnav" 2010-10-25 16:13:35,328 DEBUG quick_subs dbname: ../adcpdb/a_we position_file: a_we_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-25 16:13:35,329 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-25 16:13:35,356 DEBUG quick_adcp plotting navigation 2010-10-25 16:13:35,357 DEBUG quick_mpl Starting plot: nav 2010-10-25 16:13:35,926 DEBUG quick_mpl Ending plot: nav 2010-10-25 16:13:35,926 DEBUG quick_mpl Starting plot: refl 2010-10-25 16:13:35,977 DEBUG quick_mplplots found 2.556621 days of data 2010-10-25 16:13:35,977 DEBUG quick_mplplots start day is 295.000000 2010-10-25 16:13:35,977 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-25 16:13:35,977 DEBUG quick_mplplots printing 2 pages 2010-10-25 16:13:35,978 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-25 16:13:35,978 INFO quick_mplplots startdd is 295.0 2010-10-25 16:13:35,978 INFO quick_mplplots dt is 2.0 2010-10-25 16:13:37,210 DEBUG quick_mpl Ending plot: refl 2010-10-25 16:13:37,210 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-10-25 16:13:37,210 DEBUG quick_run find profile flags ------------ *** ------------- 2010-10-25 16:13:37,210 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:37,210 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/edit 2010-10-25 16:13:37,211 DEBUG quick_setup running python command "aedit" 2010-10-25 16:13:38,796 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-10-25 16:13:38,797 DEBUG quick_run starting in: /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:38,797 DEBUG quick_run executing commands from: edit 2010-10-25 16:13:38,801 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_we abadprf_tmp.asc 2010-10-25 16:13:38,810 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_we abadbin_tmp.asc 2010-10-25 16:13:38,837 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_we 30 2010-10-25 16:13:38,844 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-25 16:13:38,870 DEBUG quick_run changing directories back to /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:38,871 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-10-25 16:13:38,872 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-25 16:13:38,872 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-25 16:13:38,872 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:38,873 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:38,873 DEBUG quick_setup running python command "as_nav" 2010-10-25 16:13:38,873 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/23 02:17:56 to 2010/10/25 16:09:43 /* the whole time range */ 2010-10-25 16:13:38,874 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-25 16:13:38,912 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-25 16:13:38,912 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:38,912 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:38,913 DEBUG quick_setup running python command "refabs" 2010-10-25 16:13:38,913 DEBUG quick_subs fix_file_type: simple reference_file: a_we.nav fix_file: a_we.gps output: a_we.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-25 16:13:38,913 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-25 16:13:38,943 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-25 16:13:38,943 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-25 16:13:38,943 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:38,944 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:38,944 DEBUG quick_setup running python command "smoothr" 2010-10-25 16:13:38,944 DEBUG quick_subs reference_file: a_we.nav refabs_output: a_we.ref output: a_we.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-25 16:13:38,945 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-25 16:13:39,059 DEBUG quick_adcp running refsm 2010-10-25 16:13:39,642 DEBUG quick_npy Starting: refsm 2010-10-25 16:13:39,696 INFO nav dtmin = -0.50 dtmax = 0.50 2010-10-25 16:13:39,783 DEBUG quick_npy Ending: refsm 2010-10-25 16:13:39,783 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-25 16:13:39,783 DEBUG quick_setup nav/putnav.tmp exists 2010-10-25 16:13:39,784 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:39,784 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:39,784 DEBUG quick_setup running python command "putnav" 2010-10-25 16:13:39,784 DEBUG quick_subs dbname: ../adcpdb/a_we position_file: a_we_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-25 16:13:39,785 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-25 16:13:39,812 DEBUG quick_mpl Starting plot: nav 2010-10-25 16:13:40,383 DEBUG quick_mpl Ending plot: nav 2010-10-25 16:13:40,384 DEBUG quick_mpl Starting plot: refl 2010-10-25 16:13:40,433 DEBUG quick_mplplots found 2.556621 days of data 2010-10-25 16:13:40,434 DEBUG quick_mplplots start day is 295.000000 2010-10-25 16:13:40,434 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-25 16:13:40,434 DEBUG quick_mplplots printing 2 pages 2010-10-25 16:13:40,434 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-25 16:13:40,435 INFO quick_mplplots startdd is 295.0 2010-10-25 16:13:40,435 INFO quick_mplplots dt is 2.0 2010-10-25 16:13:41,677 DEBUG quick_mpl Ending plot: refl 2010-10-25 16:13:41,677 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-10-25 16:13:41,677 DEBUG quick_setup edit/lst_temp.tmp exists 2010-10-25 16:13:41,678 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:41,678 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/edit 2010-10-25 16:13:41,678 DEBUG quick_setup running python command "lst_temp" 2010-10-25 16:13:41,678 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we.tem step_size= 1 year_base= 2010 time_ranges: all 2010-10-25 16:13:41,678 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-10-25 16:13:41,694 DEBUG quick_mpl Starting plot: temp 2010-10-25 16:13:41,714 DEBUG quick_mplplots plotting 736 points 2010-10-25 16:13:42,112 DEBUG quick_mpl Ending plot: temp 2010-10-25 16:13:42,113 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-10-25 16:13:42,113 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-10-25 16:13:42,113 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,113 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/cal/botmtrk 2010-10-25 16:13:42,113 DEBUG quick_setup running python command "lst_btrk" 2010-10-25 16:13:42,114 DEBUG quick_subs dbname: ../../adcpdb/a_we output: a_we.btm step_size= 1 year_base= 2010 time_ranges: 2010/10/23 02:17:56 to 2010/10/25 16:09:43 /* whole time range */ 2010-10-25 16:13:42,114 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-10-25 16:13:42,123 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-10-25 16:13:42,124 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,124 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/cal/botmtrk 2010-10-25 16:13:42,124 DEBUG quick_setup running python command "refabsbt" 2010-10-25 16:13:42,124 DEBUG quick_subs fix_file_type: simple reference_file: a_we.btm fix_file: ../../nav/a_we.gps output: a_we.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-10-25 16:13:42,125 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-10-25 16:13:42,131 DEBUG quick_mpl Starting plot: btcal 2010-10-25 16:13:42,132 DEBUG quick_mplplots No data in a_we.btm 2010-10-25 16:13:42,132 DEBUG quick_mplplots Returning from Btplot with no output 2010-10-25 16:13:42,133 DEBUG quick_mpl Ending plot: btcal 2010-10-25 16:13:42,133 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-25 16:13:42,133 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,133 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/nav 2010-10-25 16:13:42,134 DEBUG quick_setup running python command "as_nav" 2010-10-25 16:13:42,134 DEBUG quick_subs dbname: ../adcpdb/a_we output: a_we step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/23 02:17:56 to 2010/10/25 16:09:43 /* the whole time range */ 2010-10-25 16:13:42,134 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-25 16:13:42,161 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-10-25 16:13:42,161 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,162 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/cal/watertrk 2010-10-25 16:13:42,162 DEBUG quick_setup running python command "timslip" 2010-10-25 16:13:42,162 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_we.gps reference_file: ../../nav/a_we.nav output_file: a_we_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-10-25 16:13:42,162 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-10-25 16:13:42,173 DEBUG quick_mpl Starting plot: wtcal 2010-10-25 16:13:42,175 DEBUG quick_mplplots No watertrack calibration data 2010-10-25 16:13:42,175 DEBUG quick_mpl Ending plot: wtcal 2010-10-25 16:13:42,176 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-10-25 16:13:42,176 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,176 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/vector 2010-10-25 16:13:42,176 DEBUG quick_setup running python command "timegrid" 2010-10-25 16:13:42,176 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_we.tmp 2010-10-25 16:13:42,183 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,184 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/vector 2010-10-25 16:13:42,184 DEBUG quick_setup running python command "as_vect" 2010-10-25 16:13:42,184 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-10-25 16:13:42,209 DEBUG quick_asect done making vector matfiles 2010-10-25 16:13:42,210 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,210 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/contour 2010-10-25 16:13:42,210 DEBUG quick_setup running python command "timegrid" 2010-10-25 16:13:42,211 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_we.tmp 2010-10-25 16:13:42,218 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,218 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/contour 2010-10-25 16:13:42,219 DEBUG quick_setup running python command "as_cont" 2010-10-25 16:13:42,219 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-10-25 16:13:42,253 DEBUG quick_setup starting in /home/data/w1010c_moum/proc/os75nb 2010-10-25 16:13:42,253 DEBUG quick_setup executing commands from /home/data/w1010c_moum/proc/os75nb/contour 2010-10-25 16:13:42,253 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_we 2010-10-25 16:13:42,352 DEBUG quick_asect done running getmat with "allbins" 2010-10-25 16:13:42,402 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-10-25 16:13:42,402 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-10-25 16:13:42,402 DEBUG root matfile is contour/contour_uv.mat 2010-10-25 16:13:42,404 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-10-25 16:13:42,405 DEBUG root matfile is vector/vector_uv.mat 2010-10-25 16:13:42,405 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-10-25 16:13:42,405 DEBUG root matfile is contour/contour_xy.mat 2010-10-25 16:13:42,406 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-10-25 16:13:42,406 DEBUG root matfile is vector/vector_xy.mat 2010-10-25 16:13:42,406 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-10-25 16:13:42,407 DEBUG root about to copy file edit/a_we.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-25 16:13:42,407 INFO root copying edit/a_we.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-25 16:13:42,407 INFO root Ending quick_adcp.py 2010-10-25 16:13:42,459 DEBUG quick_setup killed matlab engine