2010-10-01 17:57:48,792 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase lucid_test04 --cruisename lucid_test04 --instclass os --instname os75 --dbname a_oc --datatype uhdas --datadir /home/data/lucid_test04/raw/os75 --cfgpath /home/data/lucid_test04/proc/os75nb/config --ens_len 300 --ping_headcor --hcorr_inst ashtech ## not using topo for editing ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --npycalc all --mplplots all 2010-10-01 17:57:48,793 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2010-10-01 17:57:48,795 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-10-01 17:57:48,796 DEBUG quick_adcp progdir = /home/currents/programs 2010-10-01 17:57:48,796 DEBUG quick_adcp binos = lnx 2010-10-01 17:57:48,797 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-10-01 17:57:48,797 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-10-01 17:57:48,797 DEBUG quick_setup numpy calculations to run: refsm 2010-10-01 17:57:48,801 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-10-01 17:57:48,802 DEBUG quick_setup processing data logged with uhdas: 2010-10-01 17:57:48,802 DEBUG quick_setup datatype is uhdas 2010-10-01 17:57:48,802 DEBUG quick_setup pingtype is nb 2010-10-01 17:57:48,802 DEBUG quick_setup instclass is os 2010-10-01 17:57:48,803 DEBUG quick_setup no post-processing heading correction will be used 2010-10-01 17:57:48,803 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-10-01 17:57:48,826 DEBUG quick_setup found (in edit/asetup.m): 2010-10-01 17:57:48,826 DEBUG quick_setup config.beamangle is 30 2010-10-01 17:57:48,827 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'lucid_test04',... 'cfgpath' , '/home/data/lucid_test04/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-10-01 17:57:48,827 DEBUG quick_setup ------- starting Matlab engine ------- 2010-10-01 17:57:48,827 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-10-01 17:57:48,831 DEBUG call_matlab starting to wait for initial prompt 2010-10-01 17:57:50,200 DEBUG call_matlab received initial prompt 2010-10-01 17:57:50,956 DEBUG quick_adcp cwd is /home/data/lucid_test04/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-01 17:57:50,956 DEBUG quick_adcp original fix file is a_oc.gps 2010-10-01 17:57:50,957 DEBUG quick_adcp smoothed nav file is a_oc_refsm.asc 2010-10-01 17:57:50,957 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-10-01 17:57:50,967 DEBUG quick_subs found 16 files using wildcard expansion from "/home/data/lucid_test04/raw/os75/*.raw" 2010-10-01 17:57:50,967 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/lucid_test04/raw/os75/oc2010_272_55324.raw /home/data/lucid_test04/raw/os75/oc2010_272_55749.raw /home/data/lucid_test04/raw/os75/oc2010_272_57600.raw /home/data/lucid_test04/raw/os75/oc2010_272_62864.raw /home/data/lucid_test04/raw/os75/oc2010_272_64800.raw /home/data/lucid_test04/raw/os75/oc2010_272_72000.raw /home/data/lucid_test04/raw/os75/oc2010_272_79200.raw /home/data/lucid_test04/raw/os75/oc2010_273_00000.raw /home/data/lucid_test04/raw/os75/oc2010_273_07200.raw /home/data/lucid_test04/raw/os75/oc2010_273_14400.raw /home/data/lucid_test04/raw/os75/oc2010_273_21600.raw /home/data/lucid_test04/raw/os75/oc2010_273_28800.raw /home/data/lucid_test04/raw/os75/oc2010_273_36000.raw /home/data/lucid_test04/raw/os75/oc2010_273_43200.raw /home/data/lucid_test04/raw/os75/oc2010_273_50400.raw /home/data/lucid_test04/raw/os75/oc2010_273_57600.raw 2010-10-01 17:57:50,968 DEBUG quick_adcp LASTFILES invoked. using only 16 files from end of filelist 2010-10-01 17:57:50,968 DEBUG quick_adcp using delblks = 1 2010-10-01 17:57:50,968 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/lucid_test04/raw/os75/oc2010_272_55324.raw /home/data/lucid_test04/raw/os75/oc2010_272_55749.raw /home/data/lucid_test04/raw/os75/oc2010_272_57600.raw /home/data/lucid_test04/raw/os75/oc2010_272_62864.raw /home/data/lucid_test04/raw/os75/oc2010_272_64800.raw /home/data/lucid_test04/raw/os75/oc2010_272_72000.raw /home/data/lucid_test04/raw/os75/oc2010_272_79200.raw /home/data/lucid_test04/raw/os75/oc2010_273_00000.raw /home/data/lucid_test04/raw/os75/oc2010_273_07200.raw /home/data/lucid_test04/raw/os75/oc2010_273_14400.raw /home/data/lucid_test04/raw/os75/oc2010_273_21600.raw /home/data/lucid_test04/raw/os75/oc2010_273_28800.raw /home/data/lucid_test04/raw/os75/oc2010_273_36000.raw /home/data/lucid_test04/raw/os75/oc2010_273_43200.raw /home/data/lucid_test04/raw/os75/oc2010_273_50400.raw /home/data/lucid_test04/raw/os75/oc2010_273_57600.raw 2010-10-01 17:57:50,976 DEBUG quick_adcp Fri Oct 1 17:57:50 2010 running quick_adcp.py as follows: --cntfile /home/data/lucid_test04/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_oc cbasename contour dbname a_oc dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 28 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_oc allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase lucid_test04 cfgpath /home/data/lucid_test04/proc/os75nb/config cntfile /home/data/lucid_test04/proc/os75nb/os75nb_qpy.cnt commands None cruisename lucid_test04 data_def vmadcp.def datadir /home/data/lucid_test04/raw/os75 datafile_glob *.raw datatype uhdas dbname a_oc dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/lucid_test04/raw/os75/oc2010_272_55324.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_55749.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_57600.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_62864.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_64800.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_72000.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_79200.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_00000.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_07200.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_14400.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_21600.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_28800.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_36000.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_43200.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_50400.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 28 fixfile a_oc.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'lucid_test04',... 'cfgpath' , '/home/data/lucid_test04/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_oc.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2010 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/lucid_test04/raw/os75/oc2010_272_55324.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_55749.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_57600.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_62864.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_64800.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_72000.raw', '/home/data/lucid_test04/raw/os75/oc2010_272_79200.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_00000.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_07200.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_14400.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_21600.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_28800.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_36000.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_43200.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_50400.raw', '/home/data/lucid_test04/raw/os75/oc2010_273_57600.raw'] setup_info False skip_avg True smfile a_oc_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit 0 vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-01 17:57:50,976 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-10-01 17:57:50,977 DEBUG quick_run scanning files for time ranges... 2010-10-01 17:57:50,977 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb/scan 2010-10-01 17:57:50,977 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/scan 2010-10-01 17:57:50,980 DEBUG quick_setup running python command "scanraw" 2010-10-01 17:57:50,981 DEBUG call_matlab --> clear all 2010-10-01 17:57:51,000 DEBUG call_matlab <-- >> 2010-10-01 17:57:51,001 DEBUG call_matlab --> close all 2010-10-01 17:57:51,053 DEBUG call_matlab <-- >> 2010-10-01 17:57:51,053 DEBUG call_matlab --> cd /home/data/lucid_test04/proc/os75nb/scan 2010-10-01 17:57:51,056 DEBUG call_matlab <-- >> 2010-10-01 17:57:51,057 DEBUG call_matlab --> scan_tmp 2010-10-01 17:57:52,329 DEBUG call_matlab <-- getting config files from "/home/data/lucid_test04/proc/os75nb/config" running "lucid_test04_cfg.m" running "lucid_test04_proc.m" writing scan info to a_oc.scn >> 2010-10-01 17:57:52,330 DEBUG quick_run writing time range from a_oc.scn to a_oc.tr 2010-10-01 17:57:52,330 DEBUG quick_run getting scan time range 2010-10-01 17:57:52,330 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,331 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/scan 2010-10-01 17:57:52,331 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,331 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,332 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,334 DEBUG quick_subs start_end_time 2010/09/30 15:22:10 to 2010/10/01 17:53:38 2010-10-01 17:57:52,334 DEBUG quick_subs dd0: 272.640394 dd1: 273.745579 2010-10-01 17:57:52,335 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,335 DEBUG quick_adcp looking for database with adcpdb/a_oc*.blk 2010-10-01 17:57:52,336 DEBUG quick_adcp database found: listing blocks 2010-10-01 17:57:52,336 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:57:52,337 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:57:52,337 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:57:52,337 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:57:52,372 DEBUG quick_subs database passes. 2010-10-01 17:57:52,379 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:57:52,379 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,380 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,380 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,380 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,380 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,381 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 17:23:11 2010-10-01 17:57:52,381 DEBUG quick_subs dd0: 272.643981 dd1: 273.724433 2010-10-01 17:57:52,382 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:57:52,382 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,382 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,383 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,383 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,383 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,384 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 17:23:11 2010-10-01 17:57:52,384 DEBUG quick_subs dd0: 272.643981 dd1: 273.724433 2010-10-01 17:57:52,384 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-10-01 17:57:52,385 DEBUG quick_adcp origdb_time_range is 2010/09/30 15:27:20 to 2010/10/01 17:23:11 2010-10-01 17:57:52,385 DEBUG quick_adcp (272.643981 to 273.724433) 2010-10-01 17:57:52,385 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-10-01 17:57:52,386 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-01 17:57:52,386 DEBUG quick_subs ['adcpdb/a_oc003.blk', 'adcpdb/a_ocdir.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc004.blk'] 2010-10-01 17:57:52,386 DEBUG quick_subs length is 5 2010-10-01 17:57:52,386 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:57:52,387 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:57:52,388 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:57:52,388 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:57:52,401 DEBUG quick_subs database passes. 2010-10-01 17:57:52,402 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:57:52,402 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,402 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,402 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,403 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,403 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,404 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 17:23:11 2010-10-01 17:57:52,404 DEBUG quick_subs dd0: 272.643981 dd1: 273.724433 2010-10-01 17:57:52,404 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,404 DEBUG quick_subs reading time range 2010-10-01 17:57:52,405 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 17:23:11 2010-10-01 17:57:52,405 DEBUG quick_subs dd0: 272.643981 dd1: 273.724433 2010-10-01 17:57:52,406 INFO quick_subs Fri Oct 1 17:57:52 2010 2010-10-01 17:57:52,406 INFO quick_subs checking database time range by listblk 2010-10-01 17:57:52,406 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:57:52,407 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:57:52,407 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:57:52,407 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:57:52,420 DEBUG quick_subs database passes. 2010-10-01 17:57:52,420 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:57:52,421 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,421 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,421 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,421 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,422 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,422 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 17:23:11 2010-10-01 17:57:52,423 DEBUG quick_subs dd0: 272.643981 dd1: 273.724433 2010-10-01 17:57:52,425 INFO quick_subs found line /* 0 n= 1 a_oc001.blk */ 2010/09/30 15:27:20 to 2010/09/30 15:27:20 2010-10-01 17:57:52,425 INFO quick_subs found line /* 1 n= 23 a_oc002.blk */ 2010/09/30 15:34:13 to 2010/09/30 17:24:17 2010-10-01 17:57:52,425 INFO quick_subs found line /* 2 n= 146 a_oc003.blk */ 2010/09/30 17:32:48 to 2010/10/01 05:40:32 2010-10-01 17:57:52,426 INFO quick_subs found line /* 3 n= 140 a_oc004.blk */ 2010/10/01 05:45:33 to 2010/10/01 17:23:11 2010-10-01 17:57:52,426 INFO quick_subs scan data start at 272.6403935 2010-10-01 17:57:52,426 INFO quick_subs scan time range: 2010/09/30 15:22:10 to 2010/10/01 17:53:38 2010-10-01 17:57:52,426 INFO quick_subs codasdb ends at 273.7244329 (2010/10/01 17:23:11) 2010-10-01 17:57:52,427 DEBUG quick_subs ... changed dirs, in /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,427 DEBUG quick_subs deleting these files: ['a_oc004.blk'] 2010-10-01 17:57:52,428 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-01 17:57:52,428 DEBUG quick_subs ['adcpdb/a_oc003.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc001.blk'] 2010-10-01 17:57:52,429 DEBUG quick_subs length is 3 2010-10-01 17:57:52,429 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:57:52,429 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:57:52,430 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:57:52,442 DEBUG quick_subs database passes. 2010-10-01 17:57:52,443 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:57:52,443 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,443 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,443 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,444 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,444 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,445 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 05:40:32 2010-10-01 17:57:52,445 DEBUG quick_subs dd0: 272.643981 dd1: 273.236481 2010-10-01 17:57:52,445 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,450 DEBUG quick_subs reading time range 2010-10-01 17:57:52,450 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 05:40:32 2010-10-01 17:57:52,450 DEBUG quick_subs dd0: 272.643981 dd1: 273.236481 2010-10-01 17:57:52,450 DEBUG quick_subs codas database currently goes from 2010/09/30 15:27:20 to 2010/10/01 05:40:32 2010-10-01 17:57:52,451 DEBUG quick_subs (272.643981 to 273.236481) 2010-10-01 17:57:52,451 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003 2010-10-01 17:57:52,452 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 2010-10-01 17:57:52,452 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003'] 2010-10-01 17:57:52,453 DEBUG quick_subs checked: unloaded blkstrs: ['004'] 2010-10-01 17:57:52,453 DEBUG quick_subs first unloaded file is load/ens_blk004.cmd 2010-10-01 17:57:52,457 DEBUG quick_subs data goes from 2010/10/01 05:45:33 to 2010/10/01 17:53:38 2010-10-01 17:57:52,457 DEBUG quick_subs (273.239965 to 273.745579) 2010-10-01 17:57:52,457 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/lucid_test04/raw/os75/oc2010_272_55324.raw /home/data/lucid_test04/raw/os75/oc2010_272_55749.raw /home/data/lucid_test04/raw/os75/oc2010_272_57600.raw /home/data/lucid_test04/raw/os75/oc2010_272_62864.raw /home/data/lucid_test04/raw/os75/oc2010_272_64800.raw /home/data/lucid_test04/raw/os75/oc2010_272_72000.raw /home/data/lucid_test04/raw/os75/oc2010_272_79200.raw /home/data/lucid_test04/raw/os75/oc2010_273_00000.raw /home/data/lucid_test04/raw/os75/oc2010_273_07200.raw /home/data/lucid_test04/raw/os75/oc2010_273_14400.raw /home/data/lucid_test04/raw/os75/oc2010_273_21600.raw /home/data/lucid_test04/raw/os75/oc2010_273_28800.raw /home/data/lucid_test04/raw/os75/oc2010_273_36000.raw /home/data/lucid_test04/raw/os75/oc2010_273_43200.raw /home/data/lucid_test04/raw/os75/oc2010_273_50400.raw /home/data/lucid_test04/raw/os75/oc2010_273_57600.raw 2010-10-01 17:57:52,457 INFO quick_run Fri Oct 1 17:57:52 2010 2010-10-01 17:57:52,458 INFO quick_run about to load uhdas files 2010-10-01 17:57:52,458 INFO quick_run /home/data/lucid_test04/raw/os75/oc2010_272_55324.raw /home/data/lucid_test04/raw/os75/oc2010_272_55749.raw /home/data/lucid_test04/raw/os75/oc2010_272_57600.raw /home/data/lucid_test04/raw/os75/oc2010_272_62864.raw /home/data/lucid_test04/raw/os75/oc2010_272_64800.raw /home/data/lucid_test04/raw/os75/oc2010_272_72000.raw /home/data/lucid_test04/raw/os75/oc2010_272_79200.raw /home/data/lucid_test04/raw/os75/oc2010_273_00000.raw /home/data/lucid_test04/raw/os75/oc2010_273_07200.raw /home/data/lucid_test04/raw/os75/oc2010_273_14400.raw /home/data/lucid_test04/raw/os75/oc2010_273_21600.raw /home/data/lucid_test04/raw/os75/oc2010_273_28800.raw /home/data/lucid_test04/raw/os75/oc2010_273_36000.raw /home/data/lucid_test04/raw/os75/oc2010_273_43200.raw /home/data/lucid_test04/raw/os75/oc2010_273_50400.raw /home/data/lucid_test04/raw/os75/oc2010_273_57600.raw 2010-10-01 17:57:52,458 DEBUG quick_setup load/ldcodas.tmp exists 2010-10-01 17:57:52,458 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,459 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/load 2010-10-01 17:57:52,459 DEBUG quick_setup running python command "ldcodas" 2010-10-01 17:57:52,459 DEBUG quick_subs in /home/data/lucid_test04/proc/os75nb/load 2010-10-01 17:57:52,459 DEBUG quick_subs found block strings: ['001', '002', '003'] 2010-10-01 17:57:52,460 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004'] 2010-10-01 17:57:52,461 DEBUG quick_subs starttime is 2010/10/01 05:45:33 2010-10-01 17:57:52,462 DEBUG quick_subs RESETTING thisload_time_range 2010-10-01 17:57:52,462 DEBUG quick_subs time range of data to be loaded: 2010/10/01 05:45:33 to 2010/10/01 17:53:38 2010-10-01 17:57:52,462 DEBUG quick_subs data startdd 273.239965 data enddd 273.745579 2010-10-01 17:57:52,462 DEBUG quick_subs about to load from these cmd files ['ens_blk004.cmd'] 2010-10-01 17:57:52,463 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_oc DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk004.cmd 2010-10-01 17:57:52,463 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-10-01 17:57:52,541 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:57:52,542 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:57:52,542 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:57:52,543 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:57:52,562 DEBUG quick_subs database passes. 2010-10-01 17:57:52,563 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:57:52,563 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,564 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,564 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,564 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,564 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,565 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 17:53:18 2010-10-01 17:57:52,565 DEBUG quick_subs dd0: 272.643981 dd1: 273.745347 2010-10-01 17:57:52,566 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:57:52,566 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,566 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,566 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:57:52,566 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:57:52,567 DEBUG quick_subs extracting time range 2010-10-01 17:57:52,567 DEBUG quick_subs start_end_time 2010/09/30 15:27:20 to 2010/10/01 17:53:18 2010-10-01 17:57:52,568 DEBUG quick_subs dd0: 272.643981 dd1: 273.745347 2010-10-01 17:57:52,568 DEBUG quick_adcp loaded_time_range is 2010/09/30 15:27:20 to 2010/10/01 17:53:18 2010-10-01 17:57:52,568 DEBUG quick_adcp (272.643981 to 273.745347) 2010-10-01 17:57:52,568 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,569 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/adcpdb 2010-10-01 17:57:52,569 DEBUG quick_setup running python command "lst_conf" 2010-10-01 17:57:52,569 DEBUG quick_subs dbname: a_oc output: a_oc.cnh time_ranges: all 2010-10-01 17:57:52,570 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-10-01 17:57:52,593 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-10-01 17:57:52,593 DEBUG quick_run executing commands from /home/data/lucid_test04/proc/os75nb/edit 2010-10-01 17:57:52,594 DEBUG quick_run setup.m exists. not replacing 2010-10-01 17:57:52,594 DEBUG quick_run asetup.m exists. not replacing 2010-10-01 17:57:52,594 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-10-01 17:57:52,594 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-10-01 17:57:52,595 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,595 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/edit 2010-10-01 17:57:52,595 DEBUG quick_setup running python command "setflags" 2010-10-01 17:57:52,595 DEBUG quick_subs dbname: ../adcpdb/a_oc pg_min: 50 set_range_bit time_ranges: all 2010-10-01 17:57:52,596 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-01 17:57:52,620 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-10-01 17:57:52,620 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,620 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:52,621 DEBUG quick_setup running python command "catnav" 2010-10-01 17:57:52,622 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-10-01 17:57:52,623 DEBUG quick_run hcorr_inst is ashtech 2010-10-01 17:57:52,623 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-10-01 17:57:52,623 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:52,623 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/cal/rotate 2010-10-01 17:57:52,624 DEBUG quick_setup running python command "lst_hdg" 2010-10-01 17:57:52,624 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-10-01 17:57:52,624 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-10-01 17:57:52,637 DEBUG quick_mpl Starting plot: hcorr 2010-10-01 17:57:52,649 DEBUG quick_mplplots found 1.101368 days of data 2010-10-01 17:57:52,649 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-10-01 17:57:52,650 DEBUG quick_mplplots printing 1 pages 2010-10-01 17:57:53,528 DEBUG quick_mpl Ending plot: hcorr 2010-10-01 17:57:53,528 DEBUG quick_run ------------ step 7: rotate ------------- 2010-10-01 17:57:53,528 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:53,528 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/cal/rotate 2010-10-01 17:57:53,529 DEBUG quick_setup running python command "rotated" 2010-10-01 17:57:53,533 DEBUG quick_subs last rotated time from log file: 2010/10/01 17:23:28 2010-10-01 17:57:53,534 DEBUG quick_subs time range of currently loaded data: 2010/09/30 15:27:20 to 2010/10/01 17:53:18 2010-10-01 17:57:53,534 DEBUG quick_subs (272.643981 to 273.745347) 2010-10-01 17:57:53,534 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-10-01 17:57:53,535 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:53,535 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/cal/rotate 2010-10-01 17:57:53,535 DEBUG quick_setup running python command "rotate" 2010-10-01 17:57:53,535 DEBUG quick_subs DB_NAME: ../../adcpdb/a_oc LOG_FILE: rotate.log TIME_RANGE: 2010/10/01 05:45:33 to 2010/10/01 17:53:38 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-10-01 17:57:53,536 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-10-01 17:57:53,547 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-01 17:57:53,548 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-01 17:57:53,548 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:53,548 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:53,548 DEBUG quick_setup running python command "as_nav" 2010-10-01 17:57:53,549 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/30 15:27:20 to 2010/10/01 17:53:18 /* the whole time range */ 2010-10-01 17:57:53,549 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-01 17:57:53,573 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-01 17:57:53,573 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:53,574 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:53,574 DEBUG quick_setup running python command "refabs" 2010-10-01 17:57:53,574 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-01 17:57:53,575 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-01 17:57:53,589 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-01 17:57:53,591 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-01 17:57:53,591 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:53,591 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:53,591 DEBUG quick_setup running python command "smoothr" 2010-10-01 17:57:53,592 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-01 17:57:53,592 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-01 17:57:53,639 DEBUG quick_adcp about to run numpy refsm 2010-10-01 17:57:53,640 DEBUG quick_npy Starting: refsm 2010-10-01 17:57:53,686 INFO nav dtmin = -0.50 dtmax = 0.49 2010-10-01 17:57:53,838 DEBUG quick_npy Ending: refsm 2010-10-01 17:57:53,839 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-01 17:57:53,839 DEBUG quick_setup nav/putnav.tmp exists 2010-10-01 17:57:53,839 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:53,839 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:53,839 DEBUG quick_setup running python command "putnav" 2010-10-01 17:57:53,840 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-01 17:57:53,840 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-01 17:57:53,859 DEBUG quick_adcp plotting navigation 2010-10-01 17:57:53,859 DEBUG quick_mpl Starting plot: nav 2010-10-01 17:57:54,604 DEBUG quick_mpl Ending plot: nav 2010-10-01 17:57:54,604 DEBUG quick_mpl Starting plot: refl 2010-10-01 17:57:54,631 DEBUG quick_mplplots found 1.094394 days of data 2010-10-01 17:57:54,631 DEBUG quick_mplplots start day is 272.000000 2010-10-01 17:57:54,631 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-01 17:57:54,632 DEBUG quick_mplplots printing 1 pages 2010-10-01 17:57:54,632 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-01 17:57:54,632 INFO quick_mplplots startdd is 272.0 2010-10-01 17:57:54,632 INFO quick_mplplots dt is 2.0 2010-10-01 17:57:55,491 DEBUG quick_mpl Ending plot: refl 2010-10-01 17:57:55,491 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-10-01 17:57:55,492 DEBUG quick_run find profile flags ------------ *** ------------- 2010-10-01 17:57:55,492 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:55,492 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/edit 2010-10-01 17:57:55,492 DEBUG quick_setup running python command "aedit" 2010-10-01 17:57:58,497 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-10-01 17:57:58,497 DEBUG quick_run starting in: /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:58,497 DEBUG quick_run executing commands from: edit 2010-10-01 17:57:58,501 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_oc abadbin_tmp.asc 2010-10-01 17:57:58,522 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_oc 30 2010-10-01 17:57:58,532 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-01 17:57:58,547 DEBUG quick_run changing directories back to /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:58,548 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-10-01 17:57:58,548 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-01 17:57:58,548 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-01 17:57:58,548 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:58,549 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:58,549 DEBUG quick_setup running python command "as_nav" 2010-10-01 17:57:58,549 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/30 15:27:20 to 2010/10/01 17:53:18 /* the whole time range */ 2010-10-01 17:57:58,550 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-01 17:57:58,567 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-01 17:57:58,568 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:58,568 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:58,568 DEBUG quick_setup running python command "refabs" 2010-10-01 17:57:58,568 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-01 17:57:58,569 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-01 17:57:58,583 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-01 17:57:58,583 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-01 17:57:58,583 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:58,583 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:58,584 DEBUG quick_setup running python command "smoothr" 2010-10-01 17:57:58,584 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-01 17:57:58,584 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-01 17:57:58,633 DEBUG quick_adcp running refsm 2010-10-01 17:57:58,634 DEBUG quick_npy Starting: refsm 2010-10-01 17:57:58,672 INFO nav dtmin = -0.50 dtmax = 0.49 2010-10-01 17:57:58,737 DEBUG quick_npy Ending: refsm 2010-10-01 17:57:58,738 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-01 17:57:58,738 DEBUG quick_setup nav/putnav.tmp exists 2010-10-01 17:57:58,738 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:57:58,738 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:57:58,738 DEBUG quick_setup running python command "putnav" 2010-10-01 17:57:58,739 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-01 17:57:58,739 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-01 17:57:58,757 DEBUG quick_mpl Starting plot: nav 2010-10-01 17:57:59,520 DEBUG quick_mpl Ending plot: nav 2010-10-01 17:57:59,520 DEBUG quick_mpl Starting plot: refl 2010-10-01 17:57:59,554 DEBUG quick_mplplots found 1.094394 days of data 2010-10-01 17:57:59,554 DEBUG quick_mplplots start day is 272.000000 2010-10-01 17:57:59,555 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-01 17:57:59,555 DEBUG quick_mplplots printing 1 pages 2010-10-01 17:57:59,555 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-01 17:57:59,555 INFO quick_mplplots startdd is 272.0 2010-10-01 17:57:59,555 INFO quick_mplplots dt is 2.0 2010-10-01 17:58:00,417 DEBUG quick_mpl Ending plot: refl 2010-10-01 17:58:00,418 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-10-01 17:58:00,418 DEBUG quick_setup edit/lst_temp.tmp exists 2010-10-01 17:58:00,418 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:00,419 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/edit 2010-10-01 17:58:00,419 DEBUG quick_setup running python command "lst_temp" 2010-10-01 17:58:00,419 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc.tem step_size= 1 year_base= 2010 time_ranges: all 2010-10-01 17:58:00,420 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-10-01 17:58:00,435 DEBUG quick_mpl Starting plot: temp 2010-10-01 17:58:00,445 DEBUG quick_mplplots plotting 316 points 2010-10-01 17:58:01,307 DEBUG quick_mpl Ending plot: temp 2010-10-01 17:58:01,308 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-10-01 17:58:01,308 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-10-01 17:58:01,308 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,309 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/cal/botmtrk 2010-10-01 17:58:01,309 DEBUG quick_setup running python command "lst_btrk" 2010-10-01 17:58:01,309 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: a_oc.btm step_size= 1 year_base= 2010 time_ranges: 2010/09/30 15:27:20 to 2010/10/01 17:53:18 /* whole time range */ 2010-10-01 17:58:01,312 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-10-01 17:58:01,323 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-10-01 17:58:01,323 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,323 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/cal/botmtrk 2010-10-01 17:58:01,324 DEBUG quick_setup running python command "refabsbt" 2010-10-01 17:58:01,324 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.btm fix_file: ../../nav/a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-10-01 17:58:01,324 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-10-01 17:58:01,333 DEBUG quick_mpl Starting plot: btcal 2010-10-01 17:58:01,334 DEBUG quick_mplplots No data in a_oc.btm 2010-10-01 17:58:01,334 DEBUG quick_mplplots Returning from Btplot with no output 2010-10-01 17:58:01,335 DEBUG quick_mpl Ending plot: btcal 2010-10-01 17:58:01,335 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-01 17:58:01,335 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,335 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/nav 2010-10-01 17:58:01,336 DEBUG quick_setup running python command "as_nav" 2010-10-01 17:58:01,336 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/30 15:27:20 to 2010/10/01 17:53:18 /* the whole time range */ 2010-10-01 17:58:01,336 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-01 17:58:01,355 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-10-01 17:58:01,355 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,355 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/cal/watertrk 2010-10-01 17:58:01,356 DEBUG quick_setup running python command "timslip" 2010-10-01 17:58:01,356 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_oc.gps reference_file: ../../nav/a_oc.nav output_file: a_oc_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-10-01 17:58:01,356 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-10-01 17:58:01,366 DEBUG quick_mpl Starting plot: wtcal 2010-10-01 17:58:01,368 DEBUG quick_mplplots Found 0 calibration points 2010-10-01 17:58:01,369 DEBUG quick_mplplots Only 0 valid points found; quitting 2010-10-01 17:58:01,369 DEBUG quick_mpl Ending plot: wtcal 2010-10-01 17:58:01,369 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-10-01 17:58:01,370 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,370 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/vector 2010-10-01 17:58:01,370 DEBUG quick_setup running python command "timegrid" 2010-10-01 17:58:01,371 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-10-01 17:58:01,379 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,379 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/vector 2010-10-01 17:58:01,379 DEBUG quick_setup running python command "as_vect" 2010-10-01 17:58:01,380 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-10-01 17:58:01,402 DEBUG quick_asect done making vector matfiles 2010-10-01 17:58:01,403 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,403 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/contour 2010-10-01 17:58:01,403 DEBUG quick_setup running python command "timegrid" 2010-10-01 17:58:01,404 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-10-01 17:58:01,419 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,420 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/contour 2010-10-01 17:58:01,420 DEBUG quick_setup running python command "as_cont" 2010-10-01 17:58:01,421 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-10-01 17:58:01,447 DEBUG quick_setup starting in /home/data/lucid_test04/proc/os75nb 2010-10-01 17:58:01,448 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/os75nb/contour 2010-10-01 17:58:01,448 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_oc 2010-10-01 17:58:01,500 DEBUG quick_asect done running getmat with "allbins" 2010-10-01 17:58:01,565 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-10-01 17:58:01,566 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-10-01 17:58:01,566 DEBUG root matfile is contour/contour_uv.mat 2010-10-01 17:58:01,567 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-10-01 17:58:01,568 DEBUG root matfile is vector/vector_uv.mat 2010-10-01 17:58:01,568 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-10-01 17:58:01,569 DEBUG root matfile is contour/contour_xy.mat 2010-10-01 17:58:01,569 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-10-01 17:58:01,570 DEBUG root matfile is vector/vector_xy.mat 2010-10-01 17:58:01,570 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-10-01 17:58:01,570 DEBUG root about to copy file edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-01 17:58:01,571 INFO root copying edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-01 17:58:01,571 INFO root Ending quick_adcp.py 2010-10-01 17:58:01,678 DEBUG quick_setup killed matlab engine