2010-10-01 17:58:12,849 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase lucid_test04 --cruisename lucid_test04 --instclass nb --instname nb150 --dbname a_oc --datatype uhdas --datadir /home/data/lucid_test04/raw/nb150 --cfgpath /home/data/lucid_test04/proc/nb150/config --ens_len 300 --ping_headcor --hcorr_inst ashtech ## not using topo for editing ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --npycalc all --mplplots all 2010-10-01 17:58:12,849 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d nb150 --npycalc all --mplplots all 2010-10-01 17:58:12,852 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-10-01 17:58:12,853 DEBUG quick_adcp progdir = /home/currents/programs 2010-10-01 17:58:12,853 DEBUG quick_adcp binos = lnx 2010-10-01 17:58:12,853 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-10-01 17:58:12,854 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-10-01 17:58:12,854 DEBUG quick_setup numpy calculations to run: refsm 2010-10-01 17:58:12,854 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-10-01 17:58:12,854 DEBUG quick_setup processing data logged with uhdas: 2010-10-01 17:58:12,854 DEBUG quick_setup datatype is uhdas 2010-10-01 17:58:12,855 DEBUG quick_setup pingtype is nb 2010-10-01 17:58:12,855 DEBUG quick_setup instclass is nb 2010-10-01 17:58:12,855 DEBUG quick_setup no post-processing heading correction will be used 2010-10-01 17:58:12,855 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-10-01 17:58:12,875 DEBUG quick_setup found (in edit/asetup.m): 2010-10-01 17:58:12,875 DEBUG quick_setup config.beamangle is 30 2010-10-01 17:58:12,875 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = nb; instname = 'nb150'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'lucid_test04',... 'cfgpath' , '/home/data/lucid_test04/proc/nb150/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-10-01 17:58:12,876 DEBUG quick_setup ------- starting Matlab engine ------- 2010-10-01 17:58:12,876 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-10-01 17:58:12,888 DEBUG call_matlab starting to wait for initial prompt 2010-10-01 17:58:14,292 DEBUG call_matlab received initial prompt 2010-10-01 17:58:14,732 DEBUG quick_adcp cwd is /home/data/lucid_test04/proc/nb150 about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-01 17:58:14,732 DEBUG quick_adcp original fix file is a_oc.gps 2010-10-01 17:58:14,733 DEBUG quick_adcp smoothed nav file is a_oc_refsm.asc 2010-10-01 17:58:14,733 DEBUG quick_asect extracting matlab files for nb150, nb pings 2010-10-01 17:58:14,740 DEBUG quick_subs found 16 files using wildcard expansion from "/home/data/lucid_test04/raw/nb150/*.raw" 2010-10-01 17:58:14,741 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/lucid_test04/raw/nb150/oc2010_272_55324.raw /home/data/lucid_test04/raw/nb150/oc2010_272_55749.raw /home/data/lucid_test04/raw/nb150/oc2010_272_57600.raw /home/data/lucid_test04/raw/nb150/oc2010_272_62864.raw /home/data/lucid_test04/raw/nb150/oc2010_272_64800.raw /home/data/lucid_test04/raw/nb150/oc2010_272_72000.raw /home/data/lucid_test04/raw/nb150/oc2010_272_79200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_00000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_07200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_14400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_21600.raw /home/data/lucid_test04/raw/nb150/oc2010_273_28800.raw /home/data/lucid_test04/raw/nb150/oc2010_273_36000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_43200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_50400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_57600.raw 2010-10-01 17:58:14,741 DEBUG quick_adcp LASTFILES invoked. using only 16 files from end of filelist 2010-10-01 17:58:14,741 DEBUG quick_adcp using delblks = 1 2010-10-01 17:58:14,742 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/lucid_test04/raw/nb150/oc2010_272_55324.raw /home/data/lucid_test04/raw/nb150/oc2010_272_55749.raw /home/data/lucid_test04/raw/nb150/oc2010_272_57600.raw /home/data/lucid_test04/raw/nb150/oc2010_272_62864.raw /home/data/lucid_test04/raw/nb150/oc2010_272_64800.raw /home/data/lucid_test04/raw/nb150/oc2010_272_72000.raw /home/data/lucid_test04/raw/nb150/oc2010_272_79200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_00000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_07200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_14400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_21600.raw /home/data/lucid_test04/raw/nb150/oc2010_273_28800.raw /home/data/lucid_test04/raw/nb150/oc2010_273_36000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_43200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_50400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_57600.raw 2010-10-01 17:58:14,743 DEBUG quick_adcp Fri Oct 1 17:58:14 2010 running quick_adcp.py as follows: --cntfile /home/data/lucid_test04/proc/nb150/nb150_qpy.cnt ----- adcpsect variables ------ afilebase a_oc cbasename contour dbname a_oc dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375] firstdepth 21 gridnum 80 increment 5 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_oc allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase lucid_test04 cfgpath /home/data/lucid_test04/proc/nb150/config cntfile /home/data/lucid_test04/proc/nb150/nb150_qpy.cnt commands None cruisename lucid_test04 data_def vmadcp.def datadir /home/data/lucid_test04/raw/nb150 datafile_glob *.raw datatype uhdas dbname a_oc dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/lucid_test04/raw/nb150/oc2010_272_55324.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_55749.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_57600.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_62864.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_64800.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_72000.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_79200.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_00000.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_07200.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_14400.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_21600.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_28800.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_36000.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_43200.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_50400.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 21 fixfile a_oc.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass nb instname nb150 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = nb; instname = 'nb150'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'lucid_test04',... 'cfgpath' , '/home/data/lucid_test04/proc/nb150/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_oc.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2010 procdir nb150 progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/lucid_test04/raw/nb150/oc2010_272_55324.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_55749.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_57600.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_62864.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_64800.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_72000.raw', '/home/data/lucid_test04/raw/nb150/oc2010_272_79200.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_00000.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_07200.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_14400.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_21600.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_28800.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_36000.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_43200.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_50400.raw', '/home/data/lucid_test04/raw/nb150/oc2010_273_57600.raw'] setup_info False skip_avg True smfile a_oc_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit 0 vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-01 17:58:14,743 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-10-01 17:58:14,744 DEBUG quick_run scanning files for time ranges... 2010-10-01 17:58:14,744 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150/scan 2010-10-01 17:58:14,744 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/scan 2010-10-01 17:58:14,745 DEBUG quick_setup running python command "scanraw" 2010-10-01 17:58:14,745 DEBUG call_matlab --> clear all 2010-10-01 17:58:14,757 DEBUG call_matlab <-- >> 2010-10-01 17:58:14,757 DEBUG call_matlab --> close all 2010-10-01 17:58:14,800 DEBUG call_matlab <-- >> 2010-10-01 17:58:14,800 DEBUG call_matlab --> cd /home/data/lucid_test04/proc/nb150/scan 2010-10-01 17:58:14,804 DEBUG call_matlab <-- >> 2010-10-01 17:58:14,804 DEBUG call_matlab --> scan_tmp 2010-10-01 17:58:16,410 DEBUG call_matlab <-- getting config files from "/home/data/lucid_test04/proc/nb150/config" running "lucid_test04_cfg.m" running "lucid_test04_proc.m" writing scan info to a_oc.scn >> 2010-10-01 17:58:16,410 DEBUG quick_run writing time range from a_oc.scn to a_oc.tr 2010-10-01 17:58:16,411 DEBUG quick_run getting scan time range 2010-10-01 17:58:16,411 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,411 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/scan 2010-10-01 17:58:16,411 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,411 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,413 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,417 DEBUG quick_subs start_end_time 2010/09/30 15:22:06 to 2010/10/01 17:54:11 2010-10-01 17:58:16,420 DEBUG quick_subs dd0: 272.640347 dd1: 273.745961 2010-10-01 17:58:16,421 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,421 DEBUG quick_adcp looking for database with adcpdb/a_oc*.blk 2010-10-01 17:58:16,425 DEBUG quick_adcp database found: listing blocks 2010-10-01 17:58:16,428 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:58:16,430 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:58:16,430 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:58:16,430 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:58:16,460 DEBUG quick_subs database passes. 2010-10-01 17:58:16,460 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:58:16,460 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,461 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,461 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,461 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,462 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,462 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 17:23:28 2010-10-01 17:58:16,462 DEBUG quick_subs dd0: 272.643866 dd1: 273.724630 2010-10-01 17:58:16,463 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:58:16,463 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,463 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,463 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,464 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,464 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,465 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 17:23:28 2010-10-01 17:58:16,465 DEBUG quick_subs dd0: 272.643866 dd1: 273.724630 2010-10-01 17:58:16,465 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-10-01 17:58:16,470 DEBUG quick_adcp origdb_time_range is 2010/09/30 15:27:10 to 2010/10/01 17:23:28 2010-10-01 17:58:16,470 DEBUG quick_adcp (272.643866 to 273.724630) 2010-10-01 17:58:16,470 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-10-01 17:58:16,471 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-01 17:58:16,471 DEBUG quick_subs ['adcpdb/a_oc003.blk', 'adcpdb/a_ocdir.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc004.blk'] 2010-10-01 17:58:16,471 DEBUG quick_subs length is 6 2010-10-01 17:58:16,471 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:58:16,472 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:58:16,472 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:58:16,472 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:58:16,510 DEBUG quick_subs database passes. 2010-10-01 17:58:16,510 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:58:16,511 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,511 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,511 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,511 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,512 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,513 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 17:23:28 2010-10-01 17:58:16,513 DEBUG quick_subs dd0: 272.643866 dd1: 273.724630 2010-10-01 17:58:16,513 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,518 DEBUG quick_subs reading time range 2010-10-01 17:58:16,518 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 17:23:28 2010-10-01 17:58:16,518 DEBUG quick_subs dd0: 272.643866 dd1: 273.724630 2010-10-01 17:58:16,519 INFO quick_subs Fri Oct 1 17:58:16 2010 2010-10-01 17:58:16,519 INFO quick_subs checking database time range by listblk 2010-10-01 17:58:16,519 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:58:16,520 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:58:16,520 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:58:16,520 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:58:16,550 DEBUG quick_subs database passes. 2010-10-01 17:58:16,551 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:58:16,551 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,551 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,552 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,552 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,552 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,553 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 17:23:28 2010-10-01 17:58:16,553 DEBUG quick_subs dd0: 272.643866 dd1: 273.724630 2010-10-01 17:58:16,556 INFO quick_subs found line /* 0 n= 1 a_oc001.blk */ 2010/09/30 15:27:10 to 2010/09/30 15:27:10 2010-10-01 17:58:16,556 INFO quick_subs found line /* 1 n= 23 a_oc002.blk */ 2010/09/30 15:34:11 to 2010/09/30 17:24:30 2010-10-01 17:58:16,556 INFO quick_subs found line /* 2 n= 146 a_oc003.blk */ 2010/09/30 17:32:46 to 2010/10/01 05:39:56 2010-10-01 17:58:16,557 INFO quick_subs found line /* 3 n= 75 a_oc004.blk */ 2010/10/01 05:44:56 to 2010/10/01 11:55:59 2010-10-01 17:58:16,557 INFO quick_subs found line /* 4 n= 65 a_oc005.blk */ 2010/10/01 12:02:29 to 2010/10/01 17:23:28 2010-10-01 17:58:16,557 INFO quick_subs scan data start at 272.6403472 2010-10-01 17:58:16,558 INFO quick_subs scan time range: 2010/09/30 15:22:06 to 2010/10/01 17:54:11 2010-10-01 17:58:16,558 INFO quick_subs codasdb ends at 273.7246296 (2010/10/01 17:23:28) 2010-10-01 17:58:16,558 DEBUG quick_subs ... changed dirs, in /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,559 DEBUG quick_subs deleting these files: ['a_oc005.blk'] 2010-10-01 17:58:16,559 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-01 17:58:16,559 DEBUG quick_subs ['adcpdb/a_oc003.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc004.blk'] 2010-10-01 17:58:16,560 DEBUG quick_subs length is 4 2010-10-01 17:58:16,560 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:58:16,560 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:58:16,561 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:58:16,573 DEBUG quick_subs database passes. 2010-10-01 17:58:16,574 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:58:16,574 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,574 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,575 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,575 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,575 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,576 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 11:55:59 2010-10-01 17:58:16,576 DEBUG quick_subs dd0: 272.643866 dd1: 273.497211 2010-10-01 17:58:16,576 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,577 DEBUG quick_subs reading time range 2010-10-01 17:58:16,577 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 11:55:59 2010-10-01 17:58:16,577 DEBUG quick_subs dd0: 272.643866 dd1: 273.497211 2010-10-01 17:58:16,578 DEBUG quick_subs codas database currently goes from 2010/09/30 15:27:10 to 2010/10/01 11:55:59 2010-10-01 17:58:16,578 DEBUG quick_subs (272.643866 to 273.497211) 2010-10-01 17:58:16,578 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004 2010-10-01 17:58:16,579 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 2010-10-01 17:58:16,580 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004'] 2010-10-01 17:58:16,580 DEBUG quick_subs checked: unloaded blkstrs: ['005'] 2010-10-01 17:58:16,580 DEBUG quick_subs first unloaded file is load/ens_blk005.cmd 2010-10-01 17:58:16,581 DEBUG quick_subs data goes from 2010/10/01 12:02:29 to 2010/10/01 17:54:11 2010-10-01 17:58:16,581 DEBUG quick_subs (273.501725 to 273.745961) 2010-10-01 17:58:16,582 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/lucid_test04/raw/nb150/oc2010_272_55324.raw /home/data/lucid_test04/raw/nb150/oc2010_272_55749.raw /home/data/lucid_test04/raw/nb150/oc2010_272_57600.raw /home/data/lucid_test04/raw/nb150/oc2010_272_62864.raw /home/data/lucid_test04/raw/nb150/oc2010_272_64800.raw /home/data/lucid_test04/raw/nb150/oc2010_272_72000.raw /home/data/lucid_test04/raw/nb150/oc2010_272_79200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_00000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_07200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_14400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_21600.raw /home/data/lucid_test04/raw/nb150/oc2010_273_28800.raw /home/data/lucid_test04/raw/nb150/oc2010_273_36000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_43200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_50400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_57600.raw 2010-10-01 17:58:16,582 INFO quick_run Fri Oct 1 17:58:16 2010 2010-10-01 17:58:16,582 INFO quick_run about to load uhdas files 2010-10-01 17:58:16,582 INFO quick_run /home/data/lucid_test04/raw/nb150/oc2010_272_55324.raw /home/data/lucid_test04/raw/nb150/oc2010_272_55749.raw /home/data/lucid_test04/raw/nb150/oc2010_272_57600.raw /home/data/lucid_test04/raw/nb150/oc2010_272_62864.raw /home/data/lucid_test04/raw/nb150/oc2010_272_64800.raw /home/data/lucid_test04/raw/nb150/oc2010_272_72000.raw /home/data/lucid_test04/raw/nb150/oc2010_272_79200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_00000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_07200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_14400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_21600.raw /home/data/lucid_test04/raw/nb150/oc2010_273_28800.raw /home/data/lucid_test04/raw/nb150/oc2010_273_36000.raw /home/data/lucid_test04/raw/nb150/oc2010_273_43200.raw /home/data/lucid_test04/raw/nb150/oc2010_273_50400.raw /home/data/lucid_test04/raw/nb150/oc2010_273_57600.raw 2010-10-01 17:58:16,583 DEBUG quick_setup load/ldcodas.tmp exists 2010-10-01 17:58:16,583 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,583 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/load 2010-10-01 17:58:16,583 DEBUG quick_setup running python command "ldcodas" 2010-10-01 17:58:16,583 DEBUG quick_subs in /home/data/lucid_test04/proc/nb150/load 2010-10-01 17:58:16,584 DEBUG quick_subs found block strings: ['001', '002', '003', '004'] 2010-10-01 17:58:16,584 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005'] 2010-10-01 17:58:16,585 DEBUG quick_subs starttime is 2010/10/01 12:02:29 2010-10-01 17:58:16,586 DEBUG quick_subs RESETTING thisload_time_range 2010-10-01 17:58:16,586 DEBUG quick_subs time range of data to be loaded: 2010/10/01 12:02:29 to 2010/10/01 17:54:11 2010-10-01 17:58:16,586 DEBUG quick_subs data startdd 273.501725 data enddd 273.745961 2010-10-01 17:58:16,586 DEBUG quick_subs about to load from these cmd files ['ens_blk005.cmd'] 2010-10-01 17:58:16,586 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_oc DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk005.cmd 2010-10-01 17:58:16,587 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-10-01 17:58:16,617 DEBUG quick_subs removing a_ocdir.blk 2010-10-01 17:58:16,618 DEBUG quick_subs about to run mkblkdir 2010-10-01 17:58:16,618 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-01 17:58:16,618 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-01 17:58:16,638 DEBUG quick_subs database passes. 2010-10-01 17:58:16,639 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:58:16,639 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,639 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,640 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,640 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,640 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,641 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 17:53:33 2010-10-01 17:58:16,641 DEBUG quick_subs dd0: 272.643866 dd1: 273.745521 2010-10-01 17:58:16,641 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-10-01 17:58:16,642 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,642 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,642 DEBUG quick_setup running python command "get_time_range" 2010-10-01 17:58:16,642 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-01 17:58:16,643 DEBUG quick_subs extracting time range 2010-10-01 17:58:16,643 DEBUG quick_subs start_end_time 2010/09/30 15:27:10 to 2010/10/01 17:53:33 2010-10-01 17:58:16,643 DEBUG quick_subs dd0: 272.643866 dd1: 273.745521 2010-10-01 17:58:16,644 DEBUG quick_adcp loaded_time_range is 2010/09/30 15:27:10 to 2010/10/01 17:53:33 2010-10-01 17:58:16,644 DEBUG quick_adcp (272.643866 to 273.745521) 2010-10-01 17:58:16,644 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,645 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/adcpdb 2010-10-01 17:58:16,645 DEBUG quick_setup running python command "lst_conf" 2010-10-01 17:58:16,645 DEBUG quick_subs dbname: a_oc output: a_oc.cnh time_ranges: all 2010-10-01 17:58:16,646 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-10-01 17:58:16,656 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-10-01 17:58:16,656 DEBUG quick_run executing commands from /home/data/lucid_test04/proc/nb150/edit 2010-10-01 17:58:16,657 DEBUG quick_run setup.m exists. not replacing 2010-10-01 17:58:16,657 DEBUG quick_run asetup.m exists. not replacing 2010-10-01 17:58:16,657 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-10-01 17:58:16,657 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-10-01 17:58:16,658 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,658 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/edit 2010-10-01 17:58:16,658 DEBUG quick_setup running python command "setflags" 2010-10-01 17:58:16,658 DEBUG quick_subs dbname: ../adcpdb/a_oc pg_min: 50 set_range_bit time_ranges: all 2010-10-01 17:58:16,659 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-01 17:58:16,672 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-10-01 17:58:16,672 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,673 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:16,673 DEBUG quick_setup running python command "catnav" 2010-10-01 17:58:16,675 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-10-01 17:58:16,675 DEBUG quick_run hcorr_inst is ashtech 2010-10-01 17:58:16,675 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-10-01 17:58:16,676 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:16,676 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/cal/rotate 2010-10-01 17:58:16,676 DEBUG quick_setup running python command "lst_hdg" 2010-10-01 17:58:16,676 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-10-01 17:58:16,677 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-10-01 17:58:16,688 DEBUG quick_mpl Starting plot: hcorr 2010-10-01 17:58:16,700 DEBUG quick_mplplots found 1.101662 days of data 2010-10-01 17:58:16,701 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-10-01 17:58:16,701 DEBUG quick_mplplots printing 1 pages 2010-10-01 17:58:17,574 DEBUG quick_mpl Ending plot: hcorr 2010-10-01 17:58:17,574 DEBUG quick_run ------------ step 7: rotate ------------- 2010-10-01 17:58:17,574 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:17,574 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/cal/rotate 2010-10-01 17:58:17,575 DEBUG quick_setup running python command "rotated" 2010-10-01 17:58:17,579 DEBUG quick_subs last rotated time from log file: 2010/10/01 17:23:58 2010-10-01 17:58:17,579 DEBUG quick_subs time range of currently loaded data: 2010/09/30 15:27:10 to 2010/10/01 17:53:33 2010-10-01 17:58:17,580 DEBUG quick_subs (272.643866 to 273.745521) 2010-10-01 17:58:17,580 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-10-01 17:58:17,580 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:17,581 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/cal/rotate 2010-10-01 17:58:17,581 DEBUG quick_setup running python command "rotate" 2010-10-01 17:58:17,581 DEBUG quick_subs DB_NAME: ../../adcpdb/a_oc LOG_FILE: rotate.log TIME_RANGE: 2010/10/01 12:02:29 to 2010/10/01 17:54:11 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-10-01 17:58:17,582 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-10-01 17:58:17,591 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-01 17:58:17,591 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-01 17:58:17,591 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:17,592 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:17,592 DEBUG quick_setup running python command "as_nav" 2010-10-01 17:58:17,592 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/30 15:27:10 to 2010/10/01 17:53:33 /* the whole time range */ 2010-10-01 17:58:17,592 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-01 17:58:17,720 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-01 17:58:17,720 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:17,720 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:17,721 DEBUG quick_setup running python command "refabs" 2010-10-01 17:58:17,721 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-01 17:58:17,721 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-01 17:58:17,736 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-01 17:58:17,737 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-01 17:58:17,737 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:17,737 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:17,738 DEBUG quick_setup running python command "smoothr" 2010-10-01 17:58:17,738 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-01 17:58:17,738 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-01 17:58:17,786 DEBUG quick_adcp about to run numpy refsm 2010-10-01 17:58:17,786 DEBUG quick_npy Starting: refsm 2010-10-01 17:58:17,837 INFO nav dtmin = -0.50 dtmax = 0.49 2010-10-01 17:58:17,974 DEBUG quick_npy Ending: refsm 2010-10-01 17:58:17,975 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-01 17:58:17,975 DEBUG quick_setup nav/putnav.tmp exists 2010-10-01 17:58:17,975 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:17,976 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:17,976 DEBUG quick_setup running python command "putnav" 2010-10-01 17:58:17,976 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-01 17:58:17,976 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-01 17:58:18,003 DEBUG quick_adcp plotting navigation 2010-10-01 17:58:18,003 DEBUG quick_mpl Starting plot: nav 2010-10-01 17:58:18,745 DEBUG quick_mpl Ending plot: nav 2010-10-01 17:58:18,746 DEBUG quick_mpl Starting plot: refl 2010-10-01 17:58:18,772 DEBUG quick_mplplots found 1.094701 days of data 2010-10-01 17:58:18,773 DEBUG quick_mplplots start day is 272.000000 2010-10-01 17:58:18,774 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-01 17:58:18,774 DEBUG quick_mplplots printing 1 pages 2010-10-01 17:58:18,774 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-01 17:58:18,774 INFO quick_mplplots startdd is 272.0 2010-10-01 17:58:18,774 INFO quick_mplplots dt is 2.0 2010-10-01 17:58:19,614 DEBUG quick_mpl Ending plot: refl 2010-10-01 17:58:19,615 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-10-01 17:58:19,615 DEBUG quick_run find profile flags ------------ *** ------------- 2010-10-01 17:58:19,615 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:19,615 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/edit 2010-10-01 17:58:19,616 DEBUG quick_setup running python command "aedit" 2010-10-01 17:58:22,195 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-10-01 17:58:22,195 DEBUG quick_run starting in: /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:22,196 DEBUG quick_run executing commands from: edit 2010-10-01 17:58:22,199 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_oc abadbin_tmp.asc 2010-10-01 17:58:22,211 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_oc 30 2010-10-01 17:58:22,227 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-01 17:58:22,241 DEBUG quick_run changing directories back to /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:22,242 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-10-01 17:58:22,242 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-01 17:58:22,242 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-01 17:58:22,243 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:22,243 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:22,243 DEBUG quick_setup running python command "as_nav" 2010-10-01 17:58:22,243 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/30 15:27:10 to 2010/10/01 17:53:33 /* the whole time range */ 2010-10-01 17:58:22,244 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-01 17:58:22,268 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-01 17:58:22,269 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:22,269 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:22,270 DEBUG quick_setup running python command "refabs" 2010-10-01 17:58:22,270 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-01 17:58:22,270 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-01 17:58:22,284 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-01 17:58:22,285 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-01 17:58:22,285 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:22,285 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:22,286 DEBUG quick_setup running python command "smoothr" 2010-10-01 17:58:22,286 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-01 17:58:22,286 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-01 17:58:22,328 DEBUG quick_adcp running refsm 2010-10-01 17:58:22,328 DEBUG quick_npy Starting: refsm 2010-10-01 17:58:22,363 INFO nav dtmin = -0.50 dtmax = 0.49 2010-10-01 17:58:22,423 DEBUG quick_npy Ending: refsm 2010-10-01 17:58:22,423 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-01 17:58:22,423 DEBUG quick_setup nav/putnav.tmp exists 2010-10-01 17:58:22,423 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:22,424 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:22,424 DEBUG quick_setup running python command "putnav" 2010-10-01 17:58:22,424 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-01 17:58:22,424 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-01 17:58:22,443 DEBUG quick_mpl Starting plot: nav 2010-10-01 17:58:23,228 DEBUG quick_mpl Ending plot: nav 2010-10-01 17:58:23,228 DEBUG quick_mpl Starting plot: refl 2010-10-01 17:58:23,257 DEBUG quick_mplplots found 1.094701 days of data 2010-10-01 17:58:23,257 DEBUG quick_mplplots start day is 272.000000 2010-10-01 17:58:23,258 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-01 17:58:23,258 DEBUG quick_mplplots printing 1 pages 2010-10-01 17:58:23,258 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-01 17:58:23,258 INFO quick_mplplots startdd is 272.0 2010-10-01 17:58:23,258 INFO quick_mplplots dt is 2.0 2010-10-01 17:58:24,089 DEBUG quick_mpl Ending plot: refl 2010-10-01 17:58:24,089 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-10-01 17:58:24,090 DEBUG quick_setup edit/lst_temp.tmp exists 2010-10-01 17:58:24,090 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,090 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/edit 2010-10-01 17:58:24,090 DEBUG quick_setup running python command "lst_temp" 2010-10-01 17:58:24,090 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc.tem step_size= 1 year_base= 2010 time_ranges: all 2010-10-01 17:58:24,091 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-10-01 17:58:24,104 DEBUG quick_mpl Starting plot: temp 2010-10-01 17:58:24,115 DEBUG quick_mplplots plotting 316 points 2010-10-01 17:58:24,673 DEBUG quick_mpl Ending plot: temp 2010-10-01 17:58:24,673 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-10-01 17:58:24,674 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-10-01 17:58:24,674 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,674 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/cal/botmtrk 2010-10-01 17:58:24,674 DEBUG quick_setup running python command "lst_btrk" 2010-10-01 17:58:24,674 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: a_oc.btm step_size= 1 year_base= 2010 time_ranges: 2010/09/30 15:27:10 to 2010/10/01 17:53:33 /* whole time range */ 2010-10-01 17:58:24,675 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-10-01 17:58:24,684 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-10-01 17:58:24,685 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,685 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/cal/botmtrk 2010-10-01 17:58:24,685 DEBUG quick_setup running python command "refabsbt" 2010-10-01 17:58:24,686 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.btm fix_file: ../../nav/a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-10-01 17:58:24,686 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-10-01 17:58:24,693 DEBUG quick_mpl Starting plot: btcal 2010-10-01 17:58:24,696 ERROR quick_mpl Failure in plot: btcal Traceback (most recent call last): File "/home/currents/programs/pycurrents/adcp/quick_mpl.py", line 40, in run_plotter Plotter() File "/home/currents/programs/pycurrents/adcp/quick_mplplots.py", line 840, in __call__ if not self.get_data(): File "/home/currents/programs/pycurrents/adcp/quick_mplplots.py", line 872, in get_data bti = rangeslice(btdat[:,0], self.ddrange) IndexError: invalid index 2010-10-01 17:58:24,698 DEBUG quick_mpl Ending plot: btcal 2010-10-01 17:58:24,698 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-01 17:58:24,698 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,699 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/nav 2010-10-01 17:58:24,699 DEBUG quick_setup running python command "as_nav" 2010-10-01 17:58:24,699 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/30 15:27:10 to 2010/10/01 17:53:33 /* the whole time range */ 2010-10-01 17:58:24,699 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-01 17:58:24,717 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-10-01 17:58:24,717 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,718 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/cal/watertrk 2010-10-01 17:58:24,718 DEBUG quick_setup running python command "timslip" 2010-10-01 17:58:24,718 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_oc.gps reference_file: ../../nav/a_oc.nav output_file: a_oc_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-10-01 17:58:24,719 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-10-01 17:58:24,727 DEBUG quick_mpl Starting plot: wtcal 2010-10-01 17:58:24,729 DEBUG quick_mplplots Found 0 calibration points 2010-10-01 17:58:24,730 DEBUG quick_mplplots Only 0 valid points found; quitting 2010-10-01 17:58:24,731 DEBUG quick_mpl Ending plot: wtcal 2010-10-01 17:58:24,731 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-10-01 17:58:24,731 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,731 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/vector 2010-10-01 17:58:24,732 DEBUG quick_setup running python command "timegrid" 2010-10-01 17:58:24,732 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-10-01 17:58:24,740 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,740 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/vector 2010-10-01 17:58:24,741 DEBUG quick_setup running python command "as_vect" 2010-10-01 17:58:24,742 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-10-01 17:58:24,761 DEBUG quick_asect done making vector matfiles 2010-10-01 17:58:24,762 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,762 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/contour 2010-10-01 17:58:24,762 DEBUG quick_setup running python command "timegrid" 2010-10-01 17:58:24,762 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-10-01 17:58:24,777 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,778 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/contour 2010-10-01 17:58:24,778 DEBUG quick_setup running python command "as_cont" 2010-10-01 17:58:24,779 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-10-01 17:58:24,811 DEBUG quick_setup starting in /home/data/lucid_test04/proc/nb150 2010-10-01 17:58:24,811 DEBUG quick_setup executing commands from /home/data/lucid_test04/proc/nb150/contour 2010-10-01 17:58:24,812 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_oc 2010-10-01 17:58:24,854 DEBUG quick_asect done running getmat with "allbins" 2010-10-01 17:58:24,925 INFO root copying NOFIG to /home/adcp/www/figures/nb150_hcorr_plot.png 2010-10-01 17:58:24,926 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/nb150_hcorr_plot_thumb.png 2010-10-01 17:58:24,926 DEBUG root matfile is contour/contour_uv.mat 2010-10-01 17:58:24,928 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/nb150_cont_uv.mat 2010-10-01 17:58:24,928 DEBUG root matfile is vector/vector_uv.mat 2010-10-01 17:58:24,933 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/nb150_vect_uv.mat 2010-10-01 17:58:24,933 DEBUG root matfile is contour/contour_xy.mat 2010-10-01 17:58:24,934 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/nb150_cont_xy.mat 2010-10-01 17:58:24,934 DEBUG root matfile is vector/vector_xy.mat 2010-10-01 17:58:24,935 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/nb150_vect_xy.mat 2010-10-01 17:58:24,935 DEBUG root about to copy file edit/a_oc.tem to /home/adcp/www/data/nb150_temp.asc 2010-10-01 17:58:24,935 INFO root copying edit/a_oc.tem to /home/adcp/www/data/nb150_temp.asc 2010-10-01 17:58:24,936 INFO root Ending quick_adcp.py 2010-10-01 17:58:25,044 DEBUG quick_setup killed matlab engine