2011-03-07 20:05:44,940 DEBUG root about to write control file parameters to --yearbase 2011 --pingtype nb --cfgbase oc47001 --cruisename oc47001 --instclass os --instname os75 --dbname a_oc --datatype uhdas --datadir /home/data/oc47001/raw/os75 --cfgpath /home/data/oc47001/proc/os75nb/config --ens_len 300 --ping_headcor --hcorr_inst ashtech --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --npycalc all --mplplots all 2011-03-07 20:05:44,940 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2011-03-07 20:05:44,952 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2011-03-07 20:05:44,960 DEBUG quick_adcp progdir = /home/currents/programs 2011-03-07 20:05:44,960 DEBUG quick_adcp binos = lnx 2011-03-07 20:05:44,964 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2011-03-07 20:05:44,965 DEBUG quick_setup yearbase is 2011, proc_yearbase is 2011 2011-03-07 20:05:44,965 DEBUG quick_setup numpy calculations to run: refsm 2011-03-07 20:05:44,965 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2011-03-07 20:05:44,965 DEBUG quick_setup processing data logged with uhdas: 2011-03-07 20:05:44,966 DEBUG quick_setup datatype is uhdas 2011-03-07 20:05:44,966 DEBUG quick_setup pingtype is nb 2011-03-07 20:05:44,966 DEBUG quick_setup instclass is os 2011-03-07 20:05:44,966 DEBUG quick_setup no post-processing heading correction will be used 2011-03-07 20:05:44,966 DEBUG quick_setup transducer depth set in *_cfg.m file 2011-03-07 20:05:45,016 DEBUG quick_setup found (in edit/asetup.m): 2011-03-07 20:05:45,017 DEBUG quick_setup config.beamangle is 30 2011-03-07 20:05:45,017 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'oc47001',... 'cfgpath' , '/home/data/oc47001/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2011-03-07 20:05:45,017 DEBUG quick_setup ------- starting Matlab engine ------- 2011-03-07 20:05:45,017 DEBUG quick_setup ['/home/currents/programs/matlab'] 2011-03-07 20:05:45,027 DEBUG call_matlab starting to wait for initial prompt 2011-03-07 20:05:46,392 DEBUG call_matlab received initial prompt 2011-03-07 20:05:46,804 DEBUG quick_adcp cwd is /home/data/oc47001/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-03-07 20:05:46,804 DEBUG quick_adcp original fix file is a_oc.gps 2011-03-07 20:05:46,805 DEBUG quick_adcp smoothed nav file is a_oc_refsm.asc 2011-03-07 20:05:46,805 DEBUG quick_asect extracting matlab files for os75, nb pings 2011-03-07 20:05:46,827 DEBUG quick_subs found 77 files using wildcard expansion from "/home/data/oc47001/raw/os75/*.raw" 2011-03-07 20:05:46,828 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/oc47001/raw/os75/oc2011_059_57377.raw /home/data/oc47001/raw/os75/oc2011_059_57600.raw /home/data/oc47001/raw/os75/oc2011_059_64800.raw /home/data/oc47001/raw/os75/oc2011_059_72000.raw /home/data/oc47001/raw/os75/oc2011_059_79200.raw /home/data/oc47001/raw/os75/oc2011_060_00000.raw /home/data/oc47001/raw/os75/oc2011_060_07200.raw /home/data/oc47001/raw/os75/oc2011_060_14400.raw /home/data/oc47001/raw/os75/oc2011_060_21600.raw /home/data/oc47001/raw/os75/oc2011_060_28800.raw /home/data/oc47001/raw/os75/oc2011_060_36000.raw /home/data/oc47001/raw/os75/oc2011_060_43200.raw /home/data/oc47001/raw/os75/oc2011_060_50400.raw /home/data/oc47001/raw/os75/oc2011_060_57600.raw /home/data/oc47001/raw/os75/oc2011_060_64800.raw /home/data/oc47001/raw/os75/oc2011_060_68740.raw /home/data/oc47001/raw/os75/oc2011_060_72000.raw /home/data/oc47001/raw/os75/oc2011_060_79200.raw /home/data/oc47001/raw/os75/oc2011_061_00000.raw /home/data/oc47001/raw/os75/oc2011_061_07200.raw /home/data/oc47001/raw/os75/oc2011_061_14400.raw /home/data/oc47001/raw/os75/oc2011_061_21600.raw /home/data/oc47001/raw/os75/oc2011_061_28800.raw /home/data/oc47001/raw/os75/oc2011_061_36000.raw /home/data/oc47001/raw/os75/oc2011_061_43200.raw /home/data/oc47001/raw/os75/oc2011_061_50400.raw /home/data/oc47001/raw/os75/oc2011_061_57600.raw /home/data/oc47001/raw/os75/oc2011_061_64800.raw /home/data/oc47001/raw/os75/oc2011_061_72000.raw /home/data/oc47001/raw/os75/oc2011_061_79200.raw /home/data/oc47001/raw/os75/oc2011_062_00000.raw /home/data/oc47001/raw/os75/oc2011_062_07200.raw /home/data/oc47001/raw/os75/oc2011_062_14400.raw /home/data/oc47001/raw/os75/oc2011_062_21600.raw /home/data/oc47001/raw/os75/oc2011_062_28800.raw /home/data/oc47001/raw/os75/oc2011_062_36000.raw /home/data/oc47001/raw/os75/oc2011_062_43200.raw /home/data/oc47001/raw/os75/oc2011_062_50400.raw /home/data/oc47001/raw/os75/oc2011_062_57600.raw /home/data/oc47001/raw/os75/oc2011_062_64800.raw /home/data/oc47001/raw/os75/oc2011_062_72000.raw /home/data/oc47001/raw/os75/oc2011_062_79200.raw /home/data/oc47001/raw/os75/oc2011_063_00000.raw /home/data/oc47001/raw/os75/oc2011_063_07200.raw /home/data/oc47001/raw/os75/oc2011_063_14400.raw /home/data/oc47001/raw/os75/oc2011_063_21600.raw /home/data/oc47001/raw/os75/oc2011_063_28800.raw /home/data/oc47001/raw/os75/oc2011_063_36000.raw /home/data/oc47001/raw/os75/oc2011_063_43200.raw /home/data/oc47001/raw/os75/oc2011_063_50400.raw /home/data/oc47001/raw/os75/oc2011_063_57600.raw /home/data/oc47001/raw/os75/oc2011_063_64800.raw /home/data/oc47001/raw/os75/oc2011_063_72000.raw /home/data/oc47001/raw/os75/oc2011_063_79200.raw /home/data/oc47001/raw/os75/oc2011_064_00000.raw /home/data/oc47001/raw/os75/oc2011_064_07200.raw /home/data/oc47001/raw/os75/oc2011_064_14400.raw /home/data/oc47001/raw/os75/oc2011_064_21600.raw /home/data/oc47001/raw/os75/oc2011_064_28800.raw /home/data/oc47001/raw/os75/oc2011_064_36000.raw /home/data/oc47001/raw/os75/oc2011_064_43200.raw /home/data/oc47001/raw/os75/oc2011_064_50400.raw /home/data/oc47001/raw/os75/oc2011_064_57600.raw /home/data/oc47001/raw/os75/oc2011_064_64800.raw /home/data/oc47001/raw/os75/oc2011_064_72000.raw /home/data/oc47001/raw/os75/oc2011_064_79200.raw /home/data/oc47001/raw/os75/oc2011_065_00000.raw /home/data/oc47001/raw/os75/oc2011_065_07200.raw /home/data/oc47001/raw/os75/oc2011_065_14400.raw /home/data/oc47001/raw/os75/oc2011_065_21600.raw /home/data/oc47001/raw/os75/oc2011_065_28800.raw /home/data/oc47001/raw/os75/oc2011_065_36000.raw /home/data/oc47001/raw/os75/oc2011_065_43200.raw /home/data/oc47001/raw/os75/oc2011_065_50400.raw /home/data/oc47001/raw/os75/oc2011_065_57600.raw /home/data/oc47001/raw/os75/oc2011_065_64800.raw /home/data/oc47001/raw/os75/oc2011_065_72000.raw 2011-03-07 20:05:46,828 DEBUG quick_adcp LASTFILES invoked. using only 77 files from end of filelist 2011-03-07 20:05:46,828 DEBUG quick_adcp using delblks = 1 2011-03-07 20:05:46,829 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/oc47001/raw/os75/oc2011_059_57377.raw /home/data/oc47001/raw/os75/oc2011_059_57600.raw /home/data/oc47001/raw/os75/oc2011_059_64800.raw /home/data/oc47001/raw/os75/oc2011_059_72000.raw /home/data/oc47001/raw/os75/oc2011_059_79200.raw /home/data/oc47001/raw/os75/oc2011_060_00000.raw /home/data/oc47001/raw/os75/oc2011_060_07200.raw /home/data/oc47001/raw/os75/oc2011_060_14400.raw /home/data/oc47001/raw/os75/oc2011_060_21600.raw /home/data/oc47001/raw/os75/oc2011_060_28800.raw /home/data/oc47001/raw/os75/oc2011_060_36000.raw /home/data/oc47001/raw/os75/oc2011_060_43200.raw /home/data/oc47001/raw/os75/oc2011_060_50400.raw /home/data/oc47001/raw/os75/oc2011_060_57600.raw /home/data/oc47001/raw/os75/oc2011_060_64800.raw /home/data/oc47001/raw/os75/oc2011_060_68740.raw /home/data/oc47001/raw/os75/oc2011_060_72000.raw /home/data/oc47001/raw/os75/oc2011_060_79200.raw /home/data/oc47001/raw/os75/oc2011_061_00000.raw /home/data/oc47001/raw/os75/oc2011_061_07200.raw /home/data/oc47001/raw/os75/oc2011_061_14400.raw /home/data/oc47001/raw/os75/oc2011_061_21600.raw /home/data/oc47001/raw/os75/oc2011_061_28800.raw /home/data/oc47001/raw/os75/oc2011_061_36000.raw /home/data/oc47001/raw/os75/oc2011_061_43200.raw /home/data/oc47001/raw/os75/oc2011_061_50400.raw /home/data/oc47001/raw/os75/oc2011_061_57600.raw /home/data/oc47001/raw/os75/oc2011_061_64800.raw /home/data/oc47001/raw/os75/oc2011_061_72000.raw /home/data/oc47001/raw/os75/oc2011_061_79200.raw /home/data/oc47001/raw/os75/oc2011_062_00000.raw /home/data/oc47001/raw/os75/oc2011_062_07200.raw /home/data/oc47001/raw/os75/oc2011_062_14400.raw /home/data/oc47001/raw/os75/oc2011_062_21600.raw /home/data/oc47001/raw/os75/oc2011_062_28800.raw /home/data/oc47001/raw/os75/oc2011_062_36000.raw /home/data/oc47001/raw/os75/oc2011_062_43200.raw /home/data/oc47001/raw/os75/oc2011_062_50400.raw /home/data/oc47001/raw/os75/oc2011_062_57600.raw /home/data/oc47001/raw/os75/oc2011_062_64800.raw /home/data/oc47001/raw/os75/oc2011_062_72000.raw /home/data/oc47001/raw/os75/oc2011_062_79200.raw /home/data/oc47001/raw/os75/oc2011_063_00000.raw /home/data/oc47001/raw/os75/oc2011_063_07200.raw /home/data/oc47001/raw/os75/oc2011_063_14400.raw /home/data/oc47001/raw/os75/oc2011_063_21600.raw /home/data/oc47001/raw/os75/oc2011_063_28800.raw /home/data/oc47001/raw/os75/oc2011_063_36000.raw /home/data/oc47001/raw/os75/oc2011_063_43200.raw /home/data/oc47001/raw/os75/oc2011_063_50400.raw /home/data/oc47001/raw/os75/oc2011_063_57600.raw /home/data/oc47001/raw/os75/oc2011_063_64800.raw /home/data/oc47001/raw/os75/oc2011_063_72000.raw /home/data/oc47001/raw/os75/oc2011_063_79200.raw /home/data/oc47001/raw/os75/oc2011_064_00000.raw /home/data/oc47001/raw/os75/oc2011_064_07200.raw /home/data/oc47001/raw/os75/oc2011_064_14400.raw /home/data/oc47001/raw/os75/oc2011_064_21600.raw /home/data/oc47001/raw/os75/oc2011_064_28800.raw /home/data/oc47001/raw/os75/oc2011_064_36000.raw /home/data/oc47001/raw/os75/oc2011_064_43200.raw /home/data/oc47001/raw/os75/oc2011_064_50400.raw /home/data/oc47001/raw/os75/oc2011_064_57600.raw /home/data/oc47001/raw/os75/oc2011_064_64800.raw /home/data/oc47001/raw/os75/oc2011_064_72000.raw /home/data/oc47001/raw/os75/oc2011_064_79200.raw /home/data/oc47001/raw/os75/oc2011_065_00000.raw /home/data/oc47001/raw/os75/oc2011_065_07200.raw /home/data/oc47001/raw/os75/oc2011_065_14400.raw /home/data/oc47001/raw/os75/oc2011_065_21600.raw /home/data/oc47001/raw/os75/oc2011_065_28800.raw /home/data/oc47001/raw/os75/oc2011_065_36000.raw /home/data/oc47001/raw/os75/oc2011_065_43200.raw /home/data/oc47001/raw/os75/oc2011_065_50400.raw /home/data/oc47001/raw/os75/oc2011_065_57600.raw /home/data/oc47001/raw/os75/oc2011_065_64800.raw /home/data/oc47001/raw/os75/oc2011_065_72000.raw 2011-03-07 20:05:46,831 DEBUG quick_adcp Mon Mar 7 20:05:46 2011 running quick_adcp.py as follows: --cntfile /home/data/oc47001/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_oc cbasename contour dbname a_oc dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 20 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_oc allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase oc47001 cfgpath /home/data/oc47001/proc/os75nb/config cntfile /home/data/oc47001/proc/os75nb/os75nb_qpy.cnt commands None cruisename oc47001 data_def vmadcp.def datadir /home/data/oc47001/raw/os75 datafile_glob *.raw datatype uhdas dbname a_oc dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/oc47001/raw/os75/oc2011_059_57377.raw', '/home/data/oc47001/raw/os75/oc2011_059_57600.raw', '/home/data/oc47001/raw/os75/oc2011_059_64800.raw', '/home/data/oc47001/raw/os75/oc2011_059_72000.raw', '/home/data/oc47001/raw/os75/oc2011_059_79200.raw', '/home/data/oc47001/raw/os75/oc2011_060_00000.raw', '/home/data/oc47001/raw/os75/oc2011_060_07200.raw', '/home/data/oc47001/raw/os75/oc2011_060_14400.raw', '/home/data/oc47001/raw/os75/oc2011_060_21600.raw', '/home/data/oc47001/raw/os75/oc2011_060_28800.raw', '/home/data/oc47001/raw/os75/oc2011_060_36000.raw', '/home/data/oc47001/raw/os75/oc2011_060_43200.raw', '/home/data/oc47001/raw/os75/oc2011_060_50400.raw', '/home/data/oc47001/raw/os75/oc2011_060_57600.raw', '/home/data/oc47001/raw/os75/oc2011_060_64800.raw', '/home/data/oc47001/raw/os75/oc2011_060_68740.raw', '/home/data/oc47001/raw/os75/oc2011_060_72000.raw', '/home/data/oc47001/raw/os75/oc2011_060_79200.raw', '/home/data/oc47001/raw/os75/oc2011_061_00000.raw', '/home/data/oc47001/raw/os75/oc2011_061_07200.raw', '/home/data/oc47001/raw/os75/oc2011_061_14400.raw', '/home/data/oc47001/raw/os75/oc2011_061_21600.raw', '/home/data/oc47001/raw/os75/oc2011_061_28800.raw', '/home/data/oc47001/raw/os75/oc2011_061_36000.raw', '/home/data/oc47001/raw/os75/oc2011_061_43200.raw', '/home/data/oc47001/raw/os75/oc2011_061_50400.raw', '/home/data/oc47001/raw/os75/oc2011_061_57600.raw', '/home/data/oc47001/raw/os75/oc2011_061_64800.raw', '/home/data/oc47001/raw/os75/oc2011_061_72000.raw', '/home/data/oc47001/raw/os75/oc2011_061_79200.raw', '/home/data/oc47001/raw/os75/oc2011_062_00000.raw', '/home/data/oc47001/raw/os75/oc2011_062_07200.raw', '/home/data/oc47001/raw/os75/oc2011_062_14400.raw', '/home/data/oc47001/raw/os75/oc2011_062_21600.raw', '/home/data/oc47001/raw/os75/oc2011_062_28800.raw', '/home/data/oc47001/raw/os75/oc2011_062_36000.raw', '/home/data/oc47001/raw/os75/oc2011_062_43200.raw', '/home/data/oc47001/raw/os75/oc2011_062_50400.raw', '/home/data/oc47001/raw/os75/oc2011_062_57600.raw', '/home/data/oc47001/raw/os75/oc2011_062_64800.raw', '/home/data/oc47001/raw/os75/oc2011_062_72000.raw', '/home/data/oc47001/raw/os75/oc2011_062_79200.raw', '/home/data/oc47001/raw/os75/oc2011_063_00000.raw', '/home/data/oc47001/raw/os75/oc2011_063_07200.raw', '/home/data/oc47001/raw/os75/oc2011_063_14400.raw', '/home/data/oc47001/raw/os75/oc2011_063_21600.raw', '/home/data/oc47001/raw/os75/oc2011_063_28800.raw', '/home/data/oc47001/raw/os75/oc2011_063_36000.raw', '/home/data/oc47001/raw/os75/oc2011_063_43200.raw', '/home/data/oc47001/raw/os75/oc2011_063_50400.raw', '/home/data/oc47001/raw/os75/oc2011_063_57600.raw', '/home/data/oc47001/raw/os75/oc2011_063_64800.raw', '/home/data/oc47001/raw/os75/oc2011_063_72000.raw', '/home/data/oc47001/raw/os75/oc2011_063_79200.raw', '/home/data/oc47001/raw/os75/oc2011_064_00000.raw', '/home/data/oc47001/raw/os75/oc2011_064_07200.raw', '/home/data/oc47001/raw/os75/oc2011_064_14400.raw', '/home/data/oc47001/raw/os75/oc2011_064_21600.raw', '/home/data/oc47001/raw/os75/oc2011_064_28800.raw', '/home/data/oc47001/raw/os75/oc2011_064_36000.raw', '/home/data/oc47001/raw/os75/oc2011_064_43200.raw', '/home/data/oc47001/raw/os75/oc2011_064_50400.raw', '/home/data/oc47001/raw/os75/oc2011_064_57600.raw', '/home/data/oc47001/raw/os75/oc2011_064_64800.raw', '/home/data/oc47001/raw/os75/oc2011_064_72000.raw', '/home/data/oc47001/raw/os75/oc2011_064_79200.raw', '/home/data/oc47001/raw/os75/oc2011_065_00000.raw', '/home/data/oc47001/raw/os75/oc2011_065_07200.raw', '/home/data/oc47001/raw/os75/oc2011_065_14400.raw', '/home/data/oc47001/raw/os75/oc2011_065_21600.raw', '/home/data/oc47001/raw/os75/oc2011_065_28800.raw', '/home/data/oc47001/raw/os75/oc2011_065_36000.raw', '/home/data/oc47001/raw/os75/oc2011_065_43200.raw', '/home/data/oc47001/raw/os75/oc2011_065_50400.raw', '/home/data/oc47001/raw/os75/oc2011_065_57600.raw', '/home/data/oc47001/raw/os75/oc2011_065_64800.raw', '/home/data/oc47001/raw/os75/oc2011_065_72000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 20 fixfile a_oc.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2011; yearbase = 2011; cfg =get_uhdascfg('cfgbase' , 'oc47001',... 'cfgpath' , '/home/data/oc47001/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_oc.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2011 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/oc47001/raw/os75/oc2011_059_57377.raw', '/home/data/oc47001/raw/os75/oc2011_059_57600.raw', '/home/data/oc47001/raw/os75/oc2011_059_64800.raw', '/home/data/oc47001/raw/os75/oc2011_059_72000.raw', '/home/data/oc47001/raw/os75/oc2011_059_79200.raw', '/home/data/oc47001/raw/os75/oc2011_060_00000.raw', '/home/data/oc47001/raw/os75/oc2011_060_07200.raw', '/home/data/oc47001/raw/os75/oc2011_060_14400.raw', '/home/data/oc47001/raw/os75/oc2011_060_21600.raw', '/home/data/oc47001/raw/os75/oc2011_060_28800.raw', '/home/data/oc47001/raw/os75/oc2011_060_36000.raw', '/home/data/oc47001/raw/os75/oc2011_060_43200.raw', '/home/data/oc47001/raw/os75/oc2011_060_50400.raw', '/home/data/oc47001/raw/os75/oc2011_060_57600.raw', '/home/data/oc47001/raw/os75/oc2011_060_64800.raw', '/home/data/oc47001/raw/os75/oc2011_060_68740.raw', '/home/data/oc47001/raw/os75/oc2011_060_72000.raw', '/home/data/oc47001/raw/os75/oc2011_060_79200.raw', '/home/data/oc47001/raw/os75/oc2011_061_00000.raw', '/home/data/oc47001/raw/os75/oc2011_061_07200.raw', '/home/data/oc47001/raw/os75/oc2011_061_14400.raw', '/home/data/oc47001/raw/os75/oc2011_061_21600.raw', '/home/data/oc47001/raw/os75/oc2011_061_28800.raw', '/home/data/oc47001/raw/os75/oc2011_061_36000.raw', '/home/data/oc47001/raw/os75/oc2011_061_43200.raw', '/home/data/oc47001/raw/os75/oc2011_061_50400.raw', '/home/data/oc47001/raw/os75/oc2011_061_57600.raw', '/home/data/oc47001/raw/os75/oc2011_061_64800.raw', '/home/data/oc47001/raw/os75/oc2011_061_72000.raw', '/home/data/oc47001/raw/os75/oc2011_061_79200.raw', '/home/data/oc47001/raw/os75/oc2011_062_00000.raw', '/home/data/oc47001/raw/os75/oc2011_062_07200.raw', '/home/data/oc47001/raw/os75/oc2011_062_14400.raw', '/home/data/oc47001/raw/os75/oc2011_062_21600.raw', '/home/data/oc47001/raw/os75/oc2011_062_28800.raw', '/home/data/oc47001/raw/os75/oc2011_062_36000.raw', '/home/data/oc47001/raw/os75/oc2011_062_43200.raw', '/home/data/oc47001/raw/os75/oc2011_062_50400.raw', '/home/data/oc47001/raw/os75/oc2011_062_57600.raw', '/home/data/oc47001/raw/os75/oc2011_062_64800.raw', '/home/data/oc47001/raw/os75/oc2011_062_72000.raw', '/home/data/oc47001/raw/os75/oc2011_062_79200.raw', '/home/data/oc47001/raw/os75/oc2011_063_00000.raw', '/home/data/oc47001/raw/os75/oc2011_063_07200.raw', '/home/data/oc47001/raw/os75/oc2011_063_14400.raw', '/home/data/oc47001/raw/os75/oc2011_063_21600.raw', '/home/data/oc47001/raw/os75/oc2011_063_28800.raw', '/home/data/oc47001/raw/os75/oc2011_063_36000.raw', '/home/data/oc47001/raw/os75/oc2011_063_43200.raw', '/home/data/oc47001/raw/os75/oc2011_063_50400.raw', '/home/data/oc47001/raw/os75/oc2011_063_57600.raw', '/home/data/oc47001/raw/os75/oc2011_063_64800.raw', '/home/data/oc47001/raw/os75/oc2011_063_72000.raw', '/home/data/oc47001/raw/os75/oc2011_063_79200.raw', '/home/data/oc47001/raw/os75/oc2011_064_00000.raw', '/home/data/oc47001/raw/os75/oc2011_064_07200.raw', '/home/data/oc47001/raw/os75/oc2011_064_14400.raw', '/home/data/oc47001/raw/os75/oc2011_064_21600.raw', '/home/data/oc47001/raw/os75/oc2011_064_28800.raw', '/home/data/oc47001/raw/os75/oc2011_064_36000.raw', '/home/data/oc47001/raw/os75/oc2011_064_43200.raw', '/home/data/oc47001/raw/os75/oc2011_064_50400.raw', '/home/data/oc47001/raw/os75/oc2011_064_57600.raw', '/home/data/oc47001/raw/os75/oc2011_064_64800.raw', '/home/data/oc47001/raw/os75/oc2011_064_72000.raw', '/home/data/oc47001/raw/os75/oc2011_064_79200.raw', '/home/data/oc47001/raw/os75/oc2011_065_00000.raw', '/home/data/oc47001/raw/os75/oc2011_065_07200.raw', '/home/data/oc47001/raw/os75/oc2011_065_14400.raw', '/home/data/oc47001/raw/os75/oc2011_065_21600.raw', '/home/data/oc47001/raw/os75/oc2011_065_28800.raw', '/home/data/oc47001/raw/os75/oc2011_065_36000.raw', '/home/data/oc47001/raw/os75/oc2011_065_43200.raw', '/home/data/oc47001/raw/os75/oc2011_065_50400.raw', '/home/data/oc47001/raw/os75/oc2011_065_57600.raw', '/home/data/oc47001/raw/os75/oc2011_065_64800.raw', '/home/data/oc47001/raw/os75/oc2011_065_72000.raw'] setup_info False skip_avg True smfile a_oc_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2011 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2011-03-07 20:05:46,831 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2011-03-07 20:05:46,831 DEBUG quick_run scanning files for time ranges... 2011-03-07 20:05:46,832 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb/scan 2011-03-07 20:05:46,832 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/scan 2011-03-07 20:05:46,832 DEBUG quick_setup running python command "scanraw" 2011-03-07 20:05:46,833 DEBUG call_matlab --> clear all 2011-03-07 20:05:46,841 DEBUG call_matlab <-- >> 2011-03-07 20:05:46,841 DEBUG call_matlab --> close all 2011-03-07 20:05:46,874 DEBUG call_matlab <-- >> 2011-03-07 20:05:46,874 DEBUG call_matlab --> cd /home/data/oc47001/proc/os75nb/scan 2011-03-07 20:05:46,878 DEBUG call_matlab <-- >> 2011-03-07 20:05:46,878 DEBUG call_matlab --> scan_tmp 2011-03-07 20:05:48,059 DEBUG call_matlab <-- getting config files from "/home/data/oc47001/proc/os75nb/config" running "oc47001_cfg.m" running "oc47001_proc.m" writing scan info to a_oc.scn >> 2011-03-07 20:05:48,059 DEBUG quick_run writing time range from a_oc.scn to a_oc.tr 2011-03-07 20:05:48,060 DEBUG quick_run getting scan time range 2011-03-07 20:05:48,060 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,060 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/scan 2011-03-07 20:05:48,060 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,061 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,062 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,064 DEBUG quick_subs start_end_time 2011/03/01 15:56:20 to 2011/03/07 20:04:26 2011-03-07 20:05:48,064 DEBUG quick_subs dd0: 59.664120 dd1: 65.836412 2011-03-07 20:05:48,064 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,065 DEBUG quick_adcp looking for database with adcpdb/a_oc*.blk 2011-03-07 20:05:48,066 DEBUG quick_adcp database found: listing blocks 2011-03-07 20:05:48,066 DEBUG quick_subs removing a_ocdir.blk 2011-03-07 20:05:48,067 DEBUG quick_subs about to run mkblkdir 2011-03-07 20:05:48,067 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-03-07 20:05:48,067 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-03-07 20:05:48,082 DEBUG quick_subs database passes. 2011-03-07 20:05:48,082 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2011-03-07 20:05:48,083 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,083 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,083 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,083 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,084 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,085 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 19:33:48 2011-03-07 20:05:48,085 DEBUG quick_subs dd0: 59.667627 dd1: 65.815139 2011-03-07 20:05:48,085 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2011-03-07 20:05:48,085 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,086 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,086 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,086 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,087 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,087 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 19:33:48 2011-03-07 20:05:48,087 DEBUG quick_subs dd0: 59.667627 dd1: 65.815139 2011-03-07 20:05:48,088 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2011-03-07 20:05:48,088 DEBUG quick_adcp origdb_time_range is 2011/03/01 16:01:23 to 2011/03/07 19:33:48 2011-03-07 20:05:48,088 DEBUG quick_adcp (59.667627 to 65.815139) 2011-03-07 20:05:48,089 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2011-03-07 20:05:48,089 DEBUG quick_subs getting current (remaining after deletion) database times 2011-03-07 20:05:48,089 DEBUG quick_subs ['adcpdb/a_oc003.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_ocdir.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc013.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc012.blk', 'adcpdb/a_oc008.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_oc004.blk'] 2011-03-07 20:05:48,090 DEBUG quick_subs length is 14 2011-03-07 20:05:48,090 DEBUG quick_subs removing a_ocdir.blk 2011-03-07 20:05:48,090 DEBUG quick_subs about to run mkblkdir 2011-03-07 20:05:48,091 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-03-07 20:05:48,091 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-03-07 20:05:48,105 DEBUG quick_subs database passes. 2011-03-07 20:05:48,105 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2011-03-07 20:05:48,106 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,106 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,106 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,106 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,107 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,107 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 19:33:48 2011-03-07 20:05:48,108 DEBUG quick_subs dd0: 59.667627 dd1: 65.815139 2011-03-07 20:05:48,108 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,110 DEBUG quick_subs reading time range 2011-03-07 20:05:48,110 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 19:33:48 2011-03-07 20:05:48,110 DEBUG quick_subs dd0: 59.667627 dd1: 65.815139 2011-03-07 20:05:48,111 INFO quick_subs Mon Mar 7 20:05:48 2011 2011-03-07 20:05:48,111 INFO quick_subs checking database time range by listblk 2011-03-07 20:05:48,111 DEBUG quick_subs removing a_ocdir.blk 2011-03-07 20:05:48,112 DEBUG quick_subs about to run mkblkdir 2011-03-07 20:05:48,112 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-03-07 20:05:48,113 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-03-07 20:05:48,126 DEBUG quick_subs database passes. 2011-03-07 20:05:48,127 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2011-03-07 20:05:48,127 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,127 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,127 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,128 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,128 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,129 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 19:33:48 2011-03-07 20:05:48,129 DEBUG quick_subs dd0: 59.667627 dd1: 65.815139 2011-03-07 20:05:48,131 INFO quick_subs found line /* 0 n= 146 a_oc001.blk */ 2011/03/01 16:01:23 to 2011/03/02 04:09:36 2011-03-07 20:05:48,132 INFO quick_subs found line /* 1 n= 146 a_oc002.blk */ 2011/03/02 04:14:37 to 2011/03/02 16:27:33 2011-03-07 20:05:48,132 INFO quick_subs found line /* 2 n= 31 a_oc003.blk */ 2011/03/02 16:32:35 to 2011/03/02 19:03:18 2011-03-07 20:05:48,132 INFO quick_subs found line /* 3 n= 146 a_oc004.blk */ 2011/03/02 19:10:49 to 2011/03/03 07:20:54 2011-03-07 20:05:48,132 INFO quick_subs found line /* 4 n= 146 a_oc005.blk */ 2011/03/03 07:25:56 to 2011/03/03 19:35:52 2011-03-07 20:05:48,133 INFO quick_subs found line /* 5 n= 146 a_oc006.blk */ 2011/03/03 19:40:53 to 2011/03/04 07:51:09 2011-03-07 20:05:48,133 INFO quick_subs found line /* 6 n= 146 a_oc007.blk */ 2011/03/04 07:56:11 to 2011/03/04 20:06:41 2011-03-07 20:05:48,133 INFO quick_subs found line /* 7 n= 146 a_oc008.blk */ 2011/03/04 20:11:41 to 2011/03/05 08:22:26 2011-03-07 20:05:48,133 INFO quick_subs found line /* 8 n= 146 a_oc009.blk */ 2011/03/05 08:27:29 to 2011/03/05 20:38:35 2011-03-07 20:05:48,133 INFO quick_subs found line /* 9 n= 146 a_oc010.blk */ 2011/03/05 20:43:38 to 2011/03/06 08:54:50 2011-03-07 20:05:48,134 INFO quick_subs found line /* 10 n= 146 a_oc011.blk */ 2011/03/06 08:59:52 to 2011/03/06 21:10:48 2011-03-07 20:05:48,134 INFO quick_subs found line /* 11 n= 146 a_oc012.blk */ 2011/03/06 21:15:49 to 2011/03/07 09:25:54 2011-03-07 20:05:48,134 INFO quick_subs found line /* 12 n= 121 a_oc013.blk */ 2011/03/07 09:30:56 to 2011/03/07 19:33:48 2011-03-07 20:05:48,134 INFO quick_subs scan data start at 59.6641204 2011-03-07 20:05:48,135 INFO quick_subs scan time range: 2011/03/01 15:56:20 to 2011/03/07 20:04:26 2011-03-07 20:05:48,135 INFO quick_subs codasdb ends at 65.8151389 (2011/03/07 19:33:48) 2011-03-07 20:05:48,135 DEBUG quick_subs ... changed dirs, in /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,136 DEBUG quick_subs deleting these files: ['a_oc013.blk'] 2011-03-07 20:05:48,137 DEBUG quick_subs getting current (remaining after deletion) database times 2011-03-07 20:05:48,137 DEBUG quick_subs ['adcpdb/a_oc003.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc012.blk', 'adcpdb/a_oc008.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_oc004.blk'] 2011-03-07 20:05:48,137 DEBUG quick_subs length is 12 2011-03-07 20:05:48,138 DEBUG quick_subs about to run mkblkdir 2011-03-07 20:05:48,138 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-03-07 20:05:48,138 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-03-07 20:05:48,153 DEBUG quick_subs database passes. 2011-03-07 20:05:48,153 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2011-03-07 20:05:48,153 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,154 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,154 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,154 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,155 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,155 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 09:25:54 2011-03-07 20:05:48,155 DEBUG quick_subs dd0: 59.667627 dd1: 65.392986 2011-03-07 20:05:48,156 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,156 DEBUG quick_subs reading time range 2011-03-07 20:05:48,156 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 09:25:54 2011-03-07 20:05:48,157 DEBUG quick_subs dd0: 59.667627 dd1: 65.392986 2011-03-07 20:05:48,157 DEBUG quick_subs codas database currently goes from 2011/03/01 16:01:23 to 2011/03/07 09:25:54 2011-03-07 20:05:48,157 DEBUG quick_subs (59.667627 to 65.392986) 2011-03-07 20:05:48,158 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012 2011-03-07 20:05:48,160 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 2011-03-07 20:05:48,160 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012'] 2011-03-07 20:05:48,160 DEBUG quick_subs checked: unloaded blkstrs: ['013'] 2011-03-07 20:05:48,160 DEBUG quick_subs first unloaded file is load/ens_blk013.cmd 2011-03-07 20:05:48,162 DEBUG quick_subs data goes from 2011/03/07 09:30:56 to 2011/03/07 20:04:26 2011-03-07 20:05:48,162 DEBUG quick_subs (65.396481 to 65.836412) 2011-03-07 20:05:48,163 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/oc47001/raw/os75/oc2011_059_57377.raw /home/data/oc47001/raw/os75/oc2011_059_57600.raw /home/data/oc47001/raw/os75/oc2011_059_64800.raw /home/data/oc47001/raw/os75/oc2011_059_72000.raw /home/data/oc47001/raw/os75/oc2011_059_79200.raw /home/data/oc47001/raw/os75/oc2011_060_00000.raw /home/data/oc47001/raw/os75/oc2011_060_07200.raw /home/data/oc47001/raw/os75/oc2011_060_14400.raw /home/data/oc47001/raw/os75/oc2011_060_21600.raw /home/data/oc47001/raw/os75/oc2011_060_28800.raw /home/data/oc47001/raw/os75/oc2011_060_36000.raw /home/data/oc47001/raw/os75/oc2011_060_43200.raw /home/data/oc47001/raw/os75/oc2011_060_50400.raw /home/data/oc47001/raw/os75/oc2011_060_57600.raw /home/data/oc47001/raw/os75/oc2011_060_64800.raw /home/data/oc47001/raw/os75/oc2011_060_68740.raw /home/data/oc47001/raw/os75/oc2011_060_72000.raw /home/data/oc47001/raw/os75/oc2011_060_79200.raw /home/data/oc47001/raw/os75/oc2011_061_00000.raw /home/data/oc47001/raw/os75/oc2011_061_07200.raw /home/data/oc47001/raw/os75/oc2011_061_14400.raw /home/data/oc47001/raw/os75/oc2011_061_21600.raw /home/data/oc47001/raw/os75/oc2011_061_28800.raw /home/data/oc47001/raw/os75/oc2011_061_36000.raw /home/data/oc47001/raw/os75/oc2011_061_43200.raw /home/data/oc47001/raw/os75/oc2011_061_50400.raw /home/data/oc47001/raw/os75/oc2011_061_57600.raw /home/data/oc47001/raw/os75/oc2011_061_64800.raw /home/data/oc47001/raw/os75/oc2011_061_72000.raw /home/data/oc47001/raw/os75/oc2011_061_79200.raw /home/data/oc47001/raw/os75/oc2011_062_00000.raw /home/data/oc47001/raw/os75/oc2011_062_07200.raw /home/data/oc47001/raw/os75/oc2011_062_14400.raw /home/data/oc47001/raw/os75/oc2011_062_21600.raw /home/data/oc47001/raw/os75/oc2011_062_28800.raw /home/data/oc47001/raw/os75/oc2011_062_36000.raw /home/data/oc47001/raw/os75/oc2011_062_43200.raw /home/data/oc47001/raw/os75/oc2011_062_50400.raw /home/data/oc47001/raw/os75/oc2011_062_57600.raw /home/data/oc47001/raw/os75/oc2011_062_64800.raw /home/data/oc47001/raw/os75/oc2011_062_72000.raw /home/data/oc47001/raw/os75/oc2011_062_79200.raw /home/data/oc47001/raw/os75/oc2011_063_00000.raw /home/data/oc47001/raw/os75/oc2011_063_07200.raw /home/data/oc47001/raw/os75/oc2011_063_14400.raw /home/data/oc47001/raw/os75/oc2011_063_21600.raw /home/data/oc47001/raw/os75/oc2011_063_28800.raw /home/data/oc47001/raw/os75/oc2011_063_36000.raw /home/data/oc47001/raw/os75/oc2011_063_43200.raw /home/data/oc47001/raw/os75/oc2011_063_50400.raw /home/data/oc47001/raw/os75/oc2011_063_57600.raw /home/data/oc47001/raw/os75/oc2011_063_64800.raw /home/data/oc47001/raw/os75/oc2011_063_72000.raw /home/data/oc47001/raw/os75/oc2011_063_79200.raw /home/data/oc47001/raw/os75/oc2011_064_00000.raw /home/data/oc47001/raw/os75/oc2011_064_07200.raw /home/data/oc47001/raw/os75/oc2011_064_14400.raw /home/data/oc47001/raw/os75/oc2011_064_21600.raw /home/data/oc47001/raw/os75/oc2011_064_28800.raw /home/data/oc47001/raw/os75/oc2011_064_36000.raw /home/data/oc47001/raw/os75/oc2011_064_43200.raw /home/data/oc47001/raw/os75/oc2011_064_50400.raw /home/data/oc47001/raw/os75/oc2011_064_57600.raw /home/data/oc47001/raw/os75/oc2011_064_64800.raw /home/data/oc47001/raw/os75/oc2011_064_72000.raw /home/data/oc47001/raw/os75/oc2011_064_79200.raw /home/data/oc47001/raw/os75/oc2011_065_00000.raw /home/data/oc47001/raw/os75/oc2011_065_07200.raw /home/data/oc47001/raw/os75/oc2011_065_14400.raw /home/data/oc47001/raw/os75/oc2011_065_21600.raw /home/data/oc47001/raw/os75/oc2011_065_28800.raw /home/data/oc47001/raw/os75/oc2011_065_36000.raw /home/data/oc47001/raw/os75/oc2011_065_43200.raw /home/data/oc47001/raw/os75/oc2011_065_50400.raw /home/data/oc47001/raw/os75/oc2011_065_57600.raw /home/data/oc47001/raw/os75/oc2011_065_64800.raw /home/data/oc47001/raw/os75/oc2011_065_72000.raw 2011-03-07 20:05:48,163 INFO quick_run Mon Mar 7 20:05:48 2011 2011-03-07 20:05:48,163 INFO quick_run about to load uhdas files 2011-03-07 20:05:48,163 INFO quick_run /home/data/oc47001/raw/os75/oc2011_059_57377.raw /home/data/oc47001/raw/os75/oc2011_059_57600.raw /home/data/oc47001/raw/os75/oc2011_059_64800.raw /home/data/oc47001/raw/os75/oc2011_059_72000.raw /home/data/oc47001/raw/os75/oc2011_059_79200.raw /home/data/oc47001/raw/os75/oc2011_060_00000.raw /home/data/oc47001/raw/os75/oc2011_060_07200.raw /home/data/oc47001/raw/os75/oc2011_060_14400.raw /home/data/oc47001/raw/os75/oc2011_060_21600.raw /home/data/oc47001/raw/os75/oc2011_060_28800.raw /home/data/oc47001/raw/os75/oc2011_060_36000.raw /home/data/oc47001/raw/os75/oc2011_060_43200.raw /home/data/oc47001/raw/os75/oc2011_060_50400.raw /home/data/oc47001/raw/os75/oc2011_060_57600.raw /home/data/oc47001/raw/os75/oc2011_060_64800.raw /home/data/oc47001/raw/os75/oc2011_060_68740.raw /home/data/oc47001/raw/os75/oc2011_060_72000.raw /home/data/oc47001/raw/os75/oc2011_060_79200.raw /home/data/oc47001/raw/os75/oc2011_061_00000.raw /home/data/oc47001/raw/os75/oc2011_061_07200.raw /home/data/oc47001/raw/os75/oc2011_061_14400.raw /home/data/oc47001/raw/os75/oc2011_061_21600.raw /home/data/oc47001/raw/os75/oc2011_061_28800.raw /home/data/oc47001/raw/os75/oc2011_061_36000.raw /home/data/oc47001/raw/os75/oc2011_061_43200.raw /home/data/oc47001/raw/os75/oc2011_061_50400.raw /home/data/oc47001/raw/os75/oc2011_061_57600.raw /home/data/oc47001/raw/os75/oc2011_061_64800.raw /home/data/oc47001/raw/os75/oc2011_061_72000.raw /home/data/oc47001/raw/os75/oc2011_061_79200.raw /home/data/oc47001/raw/os75/oc2011_062_00000.raw /home/data/oc47001/raw/os75/oc2011_062_07200.raw /home/data/oc47001/raw/os75/oc2011_062_14400.raw /home/data/oc47001/raw/os75/oc2011_062_21600.raw /home/data/oc47001/raw/os75/oc2011_062_28800.raw /home/data/oc47001/raw/os75/oc2011_062_36000.raw /home/data/oc47001/raw/os75/oc2011_062_43200.raw /home/data/oc47001/raw/os75/oc2011_062_50400.raw /home/data/oc47001/raw/os75/oc2011_062_57600.raw /home/data/oc47001/raw/os75/oc2011_062_64800.raw /home/data/oc47001/raw/os75/oc2011_062_72000.raw /home/data/oc47001/raw/os75/oc2011_062_79200.raw /home/data/oc47001/raw/os75/oc2011_063_00000.raw /home/data/oc47001/raw/os75/oc2011_063_07200.raw /home/data/oc47001/raw/os75/oc2011_063_14400.raw /home/data/oc47001/raw/os75/oc2011_063_21600.raw /home/data/oc47001/raw/os75/oc2011_063_28800.raw /home/data/oc47001/raw/os75/oc2011_063_36000.raw /home/data/oc47001/raw/os75/oc2011_063_43200.raw /home/data/oc47001/raw/os75/oc2011_063_50400.raw /home/data/oc47001/raw/os75/oc2011_063_57600.raw /home/data/oc47001/raw/os75/oc2011_063_64800.raw /home/data/oc47001/raw/os75/oc2011_063_72000.raw /home/data/oc47001/raw/os75/oc2011_063_79200.raw /home/data/oc47001/raw/os75/oc2011_064_00000.raw /home/data/oc47001/raw/os75/oc2011_064_07200.raw /home/data/oc47001/raw/os75/oc2011_064_14400.raw /home/data/oc47001/raw/os75/oc2011_064_21600.raw /home/data/oc47001/raw/os75/oc2011_064_28800.raw /home/data/oc47001/raw/os75/oc2011_064_36000.raw /home/data/oc47001/raw/os75/oc2011_064_43200.raw /home/data/oc47001/raw/os75/oc2011_064_50400.raw /home/data/oc47001/raw/os75/oc2011_064_57600.raw /home/data/oc47001/raw/os75/oc2011_064_64800.raw /home/data/oc47001/raw/os75/oc2011_064_72000.raw /home/data/oc47001/raw/os75/oc2011_064_79200.raw /home/data/oc47001/raw/os75/oc2011_065_00000.raw /home/data/oc47001/raw/os75/oc2011_065_07200.raw /home/data/oc47001/raw/os75/oc2011_065_14400.raw /home/data/oc47001/raw/os75/oc2011_065_21600.raw /home/data/oc47001/raw/os75/oc2011_065_28800.raw /home/data/oc47001/raw/os75/oc2011_065_36000.raw /home/data/oc47001/raw/os75/oc2011_065_43200.raw /home/data/oc47001/raw/os75/oc2011_065_50400.raw /home/data/oc47001/raw/os75/oc2011_065_57600.raw /home/data/oc47001/raw/os75/oc2011_065_64800.raw /home/data/oc47001/raw/os75/oc2011_065_72000.raw 2011-03-07 20:05:48,164 DEBUG quick_setup load/ldcodas.tmp exists 2011-03-07 20:05:48,164 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,164 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/load 2011-03-07 20:05:48,164 DEBUG quick_setup running python command "ldcodas" 2011-03-07 20:05:48,165 DEBUG quick_subs in /home/data/oc47001/proc/os75nb/load 2011-03-07 20:05:48,165 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012'] 2011-03-07 20:05:48,166 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013'] 2011-03-07 20:05:48,168 DEBUG quick_subs starttime is 2011/03/07 09:30:56 2011-03-07 20:05:48,168 DEBUG quick_subs RESETTING thisload_time_range 2011-03-07 20:05:48,169 DEBUG quick_subs time range of data to be loaded: 2011/03/07 09:30:56 to 2011/03/07 20:04:26 2011-03-07 20:05:48,169 DEBUG quick_subs data startdd 65.396481 data enddd 65.836412 2011-03-07 20:05:48,169 DEBUG quick_subs about to load from these cmd files ['ens_blk013.cmd'] 2011-03-07 20:05:48,169 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_oc DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk013.cmd 2011-03-07 20:05:48,170 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2011-03-07 20:05:48,216 DEBUG quick_subs removing a_ocdir.blk 2011-03-07 20:05:48,216 DEBUG quick_subs about to run mkblkdir 2011-03-07 20:05:48,217 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-03-07 20:05:48,217 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2011-03-07 20:05:48,230 DEBUG quick_subs database passes. 2011-03-07 20:05:48,231 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2011-03-07 20:05:48,231 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,231 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,232 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,232 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,232 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,233 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 20:04:06 2011-03-07 20:05:48,233 DEBUG quick_subs dd0: 59.667627 dd1: 65.836181 2011-03-07 20:05:48,234 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2011-03-07 20:05:48,234 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,234 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,234 DEBUG quick_setup running python command "get_time_range" 2011-03-07 20:05:48,235 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2011-03-07 20:05:48,235 DEBUG quick_subs extracting time range 2011-03-07 20:05:48,236 DEBUG quick_subs start_end_time 2011/03/01 16:01:23 to 2011/03/07 20:04:06 2011-03-07 20:05:48,236 DEBUG quick_subs dd0: 59.667627 dd1: 65.836181 2011-03-07 20:05:48,236 DEBUG quick_adcp loaded_time_range is 2011/03/01 16:01:23 to 2011/03/07 20:04:06 2011-03-07 20:05:48,236 DEBUG quick_adcp (59.667627 to 65.836181) 2011-03-07 20:05:48,237 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,237 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/adcpdb 2011-03-07 20:05:48,237 DEBUG quick_setup running python command "lst_conf" 2011-03-07 20:05:48,237 DEBUG quick_subs dbname: a_oc output: a_oc.cnh time_ranges: all 2011-03-07 20:05:48,238 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2011-03-07 20:05:48,261 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2011-03-07 20:05:48,261 DEBUG quick_run executing commands from /home/data/oc47001/proc/os75nb/edit 2011-03-07 20:05:48,262 DEBUG quick_run setup.m exists. not replacing 2011-03-07 20:05:48,262 DEBUG quick_run asetup.m exists. not replacing 2011-03-07 20:05:48,262 DEBUG quick_run aflagit_setup.m exists. not replacing 2011-03-07 20:05:48,262 DEBUG quick_run ------------ step 4: run setflags ------------- 2011-03-07 20:05:48,262 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,263 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/edit 2011-03-07 20:05:48,263 DEBUG quick_setup running python command "setflags" 2011-03-07 20:05:48,263 DEBUG quick_subs dbname: ../adcpdb/a_oc pg_min: 50 set_range_bit time_ranges: all 2011-03-07 20:05:48,264 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-03-07 20:05:48,312 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2011-03-07 20:05:48,312 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,313 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:48,313 DEBUG quick_setup running python command "catnav" 2011-03-07 20:05:48,316 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2011-03-07 20:05:48,316 DEBUG quick_run hcorr_inst is ashtech 2011-03-07 20:05:48,317 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2011-03-07 20:05:48,317 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:48,317 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/cal/rotate 2011-03-07 20:05:48,317 DEBUG quick_setup running python command "lst_hdg" 2011-03-07 20:05:48,318 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2011-03-07 20:05:48,318 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2011-03-07 20:05:48,349 DEBUG quick_mpl Starting plot: hcorr 2011-03-07 20:05:48,479 DEBUG quick_mplplots found 6.168554 days of data 2011-03-07 20:05:48,479 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2011-03-07 20:05:48,479 DEBUG quick_mplplots printing 2 pages 2011-03-07 20:05:50,574 DEBUG quick_mpl Ending plot: hcorr 2011-03-07 20:05:50,575 DEBUG quick_run ------------ step 7: rotate ------------- 2011-03-07 20:05:50,575 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:50,575 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/cal/rotate 2011-03-07 20:05:50,575 DEBUG quick_setup running python command "rotated" 2011-03-07 20:05:50,601 DEBUG quick_subs last rotated time from log file: 2011/03/07 19:34:08 2011-03-07 20:05:50,601 DEBUG quick_subs time range of currently loaded data: 2011/03/01 16:01:23 to 2011/03/07 20:04:06 2011-03-07 20:05:50,601 DEBUG quick_subs (59.667627 to 65.836181) 2011-03-07 20:05:50,602 DEBUG quick_setup cal/rotate/rotate.tmp exists 2011-03-07 20:05:50,602 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:50,603 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/cal/rotate 2011-03-07 20:05:50,603 DEBUG quick_setup running python command "rotate" 2011-03-07 20:05:50,603 DEBUG quick_subs DB_NAME: ../../adcpdb/a_oc LOG_FILE: rotate.log TIME_RANGE: 2011/03/07 09:30:56 to 2011/03/07 20:04:26 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2011-03-07 20:05:50,603 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2011-03-07 20:05:50,614 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-03-07 20:05:50,614 DEBUG quick_setup nav/as_nav.tmp exists 2011-03-07 20:05:50,614 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:50,615 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:50,615 DEBUG quick_setup running python command "as_nav" 2011-03-07 20:05:50,615 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/03/01 16:01:23 to 2011/03/07 20:04:06 /* the whole time range */ 2011-03-07 20:05:50,616 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-03-07 20:05:50,677 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-03-07 20:05:50,678 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:50,678 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:50,678 DEBUG quick_setup running python command "refabs" 2011-03-07 20:05:50,678 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-03-07 20:05:50,679 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-03-07 20:05:50,720 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-03-07 20:05:50,720 DEBUG quick_setup nav/smoothr.tmp exists 2011-03-07 20:05:50,721 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:50,721 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:50,721 DEBUG quick_setup running python command "smoothr" 2011-03-07 20:05:50,721 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-03-07 20:05:50,722 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-03-07 20:05:50,899 DEBUG quick_adcp about to run numpy refsm 2011-03-07 20:05:50,899 DEBUG quick_npy Starting: refsm 2011-03-07 20:05:51,069 INFO nav dtmin = -0.50 dtmax = 0.50 2011-03-07 20:05:51,393 DEBUG quick_npy Ending: refsm 2011-03-07 20:05:51,394 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-03-07 20:05:51,394 DEBUG quick_setup nav/putnav.tmp exists 2011-03-07 20:05:51,394 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:51,395 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:51,395 DEBUG quick_setup running python command "putnav" 2011-03-07 20:05:51,395 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-03-07 20:05:51,395 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-03-07 20:05:51,462 DEBUG quick_adcp plotting navigation 2011-03-07 20:05:51,463 DEBUG quick_mpl Starting plot: nav 2011-03-07 20:05:52,214 DEBUG quick_mpl Ending plot: nav 2011-03-07 20:05:52,214 DEBUG quick_mpl Starting plot: refl 2011-03-07 20:05:52,349 DEBUG quick_mplplots found 6.161538 days of data 2011-03-07 20:05:52,349 DEBUG quick_mplplots start day is 59.000000 2011-03-07 20:05:52,349 DEBUG quick_mplplots figures with 2.000000 days per page 2011-03-07 20:05:52,350 DEBUG quick_mplplots printing 4 pages 2011-03-07 20:05:52,350 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-03-07 20:05:52,350 INFO quick_mplplots startdd is 59.0 2011-03-07 20:05:52,350 INFO quick_mplplots dt is 2.0 2011-03-07 20:05:55,945 DEBUG quick_mpl Ending plot: refl 2011-03-07 20:05:55,946 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2011-03-07 20:05:55,946 DEBUG quick_run find profile flags ------------ *** ------------- 2011-03-07 20:05:55,946 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:55,946 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/edit 2011-03-07 20:05:55,947 DEBUG quick_setup running python command "aedit" 2011-03-07 20:05:58,415 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2011-03-07 20:05:58,416 DEBUG quick_run starting in: /home/data/oc47001/proc/os75nb 2011-03-07 20:05:58,416 DEBUG quick_run executing commands from: edit 2011-03-07 20:05:58,419 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_oc abadprf_tmp.asc 2011-03-07 20:05:58,432 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_oc abadbin_tmp.asc 2011-03-07 20:05:58,445 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_oc 30 2011-03-07 20:05:58,454 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2011-03-07 20:05:58,500 DEBUG quick_run changing directories back to /home/data/oc47001/proc/os75nb 2011-03-07 20:05:58,501 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2011-03-07 20:05:58,501 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-03-07 20:05:58,501 DEBUG quick_setup nav/as_nav.tmp exists 2011-03-07 20:05:58,502 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:58,502 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:58,502 DEBUG quick_setup running python command "as_nav" 2011-03-07 20:05:58,502 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/03/01 16:01:23 to 2011/03/07 20:04:06 /* the whole time range */ 2011-03-07 20:05:58,503 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-03-07 20:05:58,587 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-03-07 20:05:58,587 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:58,588 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:58,588 DEBUG quick_setup running python command "refabs" 2011-03-07 20:05:58,588 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-03-07 20:05:58,589 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2011-03-07 20:05:58,680 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-03-07 20:05:58,681 DEBUG quick_setup nav/smoothr.tmp exists 2011-03-07 20:05:58,681 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:58,681 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:58,682 DEBUG quick_setup running python command "smoothr" 2011-03-07 20:05:58,682 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-03-07 20:05:58,682 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2011-03-07 20:05:59,095 DEBUG quick_adcp running refsm 2011-03-07 20:05:59,108 DEBUG quick_npy Starting: refsm 2011-03-07 20:05:59,277 INFO nav dtmin = -0.50 dtmax = 0.50 2011-03-07 20:05:59,534 DEBUG quick_npy Ending: refsm 2011-03-07 20:05:59,535 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-03-07 20:05:59,535 DEBUG quick_setup nav/putnav.tmp exists 2011-03-07 20:05:59,535 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:05:59,536 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:05:59,536 DEBUG quick_setup running python command "putnav" 2011-03-07 20:05:59,536 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-03-07 20:05:59,537 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2011-03-07 20:06:01,228 DEBUG quick_mpl Starting plot: nav 2011-03-07 20:06:01,982 DEBUG quick_mpl Ending plot: nav 2011-03-07 20:06:01,982 DEBUG quick_mpl Starting plot: refl 2011-03-07 20:06:02,118 DEBUG quick_mplplots found 6.161538 days of data 2011-03-07 20:06:02,118 DEBUG quick_mplplots start day is 59.000000 2011-03-07 20:06:02,118 DEBUG quick_mplplots figures with 2.000000 days per page 2011-03-07 20:06:02,119 DEBUG quick_mplplots printing 4 pages 2011-03-07 20:06:02,119 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-03-07 20:06:02,119 INFO quick_mplplots startdd is 59.0 2011-03-07 20:06:02,119 INFO quick_mplplots dt is 2.0 2011-03-07 20:06:05,711 DEBUG quick_mpl Ending plot: refl 2011-03-07 20:06:05,711 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2011-03-07 20:06:05,711 DEBUG quick_setup edit/lst_temp.tmp exists 2011-03-07 20:06:05,712 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:05,712 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/edit 2011-03-07 20:06:05,712 DEBUG quick_setup running python command "lst_temp" 2011-03-07 20:06:05,712 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc.tem step_size= 1 year_base= 2011 time_ranges: all 2011-03-07 20:06:05,713 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2011-03-07 20:06:05,752 DEBUG quick_mpl Starting plot: temp 2011-03-07 20:06:05,797 DEBUG quick_mplplots plotting 1764 points 2011-03-07 20:06:06,321 DEBUG quick_mpl Ending plot: temp 2011-03-07 20:06:06,322 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2011-03-07 20:06:06,322 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2011-03-07 20:06:06,322 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:06,322 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/cal/botmtrk 2011-03-07 20:06:06,323 DEBUG quick_setup running python command "lst_btrk" 2011-03-07 20:06:06,323 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: a_oc.btm step_size= 1 year_base= 2011 time_ranges: 2011/03/01 16:01:23 to 2011/03/07 20:04:06 /* whole time range */ 2011-03-07 20:06:06,323 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2011-03-07 20:06:06,350 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2011-03-07 20:06:06,351 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:06,351 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/cal/botmtrk 2011-03-07 20:06:06,351 DEBUG quick_setup running python command "refabsbt" 2011-03-07 20:06:06,352 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.btm fix_file: ../../nav/a_oc.gps output: a_oc.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2011-03-07 20:06:06,352 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2011-03-07 20:06:06,381 DEBUG quick_mpl Starting plot: btcal 2011-03-07 20:06:07,516 DEBUG quick_mpl Ending plot: btcal 2011-03-07 20:06:07,517 DEBUG quick_setup nav/as_nav.tmp exists 2011-03-07 20:06:07,517 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:07,517 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/nav 2011-03-07 20:06:07,517 DEBUG quick_setup running python command "as_nav" 2011-03-07 20:06:07,518 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/03/01 16:01:23 to 2011/03/07 20:04:06 /* the whole time range */ 2011-03-07 20:06:07,518 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2011-03-07 20:06:07,582 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2011-03-07 20:06:07,582 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:07,582 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/cal/watertrk 2011-03-07 20:06:07,583 DEBUG quick_setup running python command "timslip" 2011-03-07 20:06:07,583 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_oc.gps reference_file: ../../nav/a_oc.nav output_file: a_oc_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2011-03-07 20:06:07,583 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2011-03-07 20:06:07,602 DEBUG quick_mpl Starting plot: wtcal 2011-03-07 20:06:07,605 DEBUG quick_mplplots Found 4 calibration points 2011-03-07 20:06:09,653 DEBUG quick_mpl Ending plot: wtcal 2011-03-07 20:06:09,654 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2011-03-07 20:06:09,654 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:09,654 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/vector 2011-03-07 20:06:09,655 DEBUG quick_setup running python command "timegrid" 2011-03-07 20:06:09,655 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2011-03-07 20:06:09,664 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:09,664 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/vector 2011-03-07 20:06:09,664 DEBUG quick_setup running python command "as_vect" 2011-03-07 20:06:09,665 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2011-03-07 20:06:09,741 DEBUG quick_asect done making vector matfiles 2011-03-07 20:06:09,741 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:09,742 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/contour 2011-03-07 20:06:09,742 DEBUG quick_setup running python command "timegrid" 2011-03-07 20:06:09,742 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2011-03-07 20:06:09,753 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:09,753 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/contour 2011-03-07 20:06:09,754 DEBUG quick_setup running python command "as_cont" 2011-03-07 20:06:09,754 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2011-03-07 20:06:09,858 DEBUG quick_setup starting in /home/data/oc47001/proc/os75nb 2011-03-07 20:06:09,858 DEBUG quick_setup executing commands from /home/data/oc47001/proc/os75nb/contour 2011-03-07 20:06:09,859 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_oc 2011-03-07 20:06:10,187 DEBUG quick_asect done running getmat with "allbins" 2011-03-07 20:06:10,249 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2011-03-07 20:06:10,250 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2011-03-07 20:06:10,250 DEBUG root matfile is contour/contour_uv.mat 2011-03-07 20:06:10,254 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2011-03-07 20:06:10,255 DEBUG root matfile is vector/vector_uv.mat 2011-03-07 20:06:10,256 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2011-03-07 20:06:10,256 DEBUG root matfile is contour/contour_xy.mat 2011-03-07 20:06:10,257 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2011-03-07 20:06:10,257 DEBUG root matfile is vector/vector_xy.mat 2011-03-07 20:06:10,258 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2011-03-07 20:06:10,258 DEBUG root about to copy file edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2011-03-07 20:06:10,259 INFO root copying edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2011-03-07 20:06:10,259 INFO root Ending quick_adcp.py 2011-03-07 20:06:10,365 DEBUG quick_setup killed matlab engine