2010-06-28 18:57:09,522 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase oc464 --cruisename oc464 --instclass os --instname os75 --dbname a_oc --datatype uhdas --datadir /home/data/oc464/raw/os75 --cfgpath /home/data/oc464/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech ## not using topo for editing ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --npycalc all --mplplots all 2010-06-28 18:57:09,522 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2010-06-28 18:57:09,525 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-06-28 18:57:09,526 DEBUG quick_adcp progdir = /home/currents/programs 2010-06-28 18:57:09,526 DEBUG quick_adcp binos = lnx 2010-06-28 18:57:09,527 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-06-28 18:57:09,527 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-06-28 18:57:09,527 DEBUG quick_setup numpy calculations to run: refsm 2010-06-28 18:57:09,527 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-06-28 18:57:09,527 DEBUG quick_setup processing data logged with uhdas: 2010-06-28 18:57:09,528 DEBUG quick_setup datatype is uhdas 2010-06-28 18:57:09,528 DEBUG quick_setup pingtype is nb 2010-06-28 18:57:09,528 DEBUG quick_setup instclass is os 2010-06-28 18:57:09,528 DEBUG quick_setup no post-processing heading correction will be used 2010-06-28 18:57:09,528 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-06-28 18:57:09,551 DEBUG quick_setup found (in edit/asetup.m): 2010-06-28 18:57:09,551 DEBUG quick_setup config.beamangle is 30 2010-06-28 18:57:09,552 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'oc464',... 'cfgpath' , '/home/data/oc464/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-06-28 18:57:09,552 DEBUG quick_setup ------- starting Matlab engine ------- 2010-06-28 18:57:09,552 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-06-28 18:57:09,557 DEBUG call_matlab starting to wait for initial prompt 2010-06-28 18:57:11,175 DEBUG call_matlab received initial prompt 2010-06-28 18:57:11,420 DEBUG quick_adcp cwd is /home/data/oc464/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-06-28 18:57:11,421 DEBUG quick_adcp original fix file is a_oc.gps 2010-06-28 18:57:11,421 DEBUG quick_adcp smoothed nav file is a_oc_refsm.asc 2010-06-28 18:57:11,421 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-06-28 18:57:11,440 DEBUG quick_subs found 76 files using wildcard expansion from "/home/data/oc464/raw/os75/*.raw" 2010-06-28 18:57:11,440 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/oc464/raw/os75/oc2010_172_44822.raw /home/data/oc464/raw/os75/oc2010_172_50400.raw /home/data/oc464/raw/os75/oc2010_172_57600.raw /home/data/oc464/raw/os75/oc2010_172_64800.raw /home/data/oc464/raw/os75/oc2010_172_72000.raw /home/data/oc464/raw/os75/oc2010_172_79200.raw /home/data/oc464/raw/os75/oc2010_173_00000.raw /home/data/oc464/raw/os75/oc2010_173_07200.raw /home/data/oc464/raw/os75/oc2010_173_14400.raw /home/data/oc464/raw/os75/oc2010_173_21600.raw /home/data/oc464/raw/os75/oc2010_173_28800.raw /home/data/oc464/raw/os75/oc2010_173_36000.raw /home/data/oc464/raw/os75/oc2010_173_43200.raw /home/data/oc464/raw/os75/oc2010_173_50400.raw /home/data/oc464/raw/os75/oc2010_173_57600.raw /home/data/oc464/raw/os75/oc2010_173_64800.raw /home/data/oc464/raw/os75/oc2010_173_72000.raw /home/data/oc464/raw/os75/oc2010_173_79200.raw /home/data/oc464/raw/os75/oc2010_174_00000.raw /home/data/oc464/raw/os75/oc2010_174_07200.raw /home/data/oc464/raw/os75/oc2010_174_14400.raw /home/data/oc464/raw/os75/oc2010_174_21600.raw /home/data/oc464/raw/os75/oc2010_174_28800.raw /home/data/oc464/raw/os75/oc2010_174_36000.raw /home/data/oc464/raw/os75/oc2010_174_43200.raw /home/data/oc464/raw/os75/oc2010_174_50400.raw /home/data/oc464/raw/os75/oc2010_174_57600.raw /home/data/oc464/raw/os75/oc2010_174_64800.raw /home/data/oc464/raw/os75/oc2010_174_72000.raw /home/data/oc464/raw/os75/oc2010_174_79200.raw /home/data/oc464/raw/os75/oc2010_175_00000.raw /home/data/oc464/raw/os75/oc2010_175_07200.raw /home/data/oc464/raw/os75/oc2010_175_14400.raw /home/data/oc464/raw/os75/oc2010_175_21600.raw /home/data/oc464/raw/os75/oc2010_175_28800.raw /home/data/oc464/raw/os75/oc2010_175_36000.raw /home/data/oc464/raw/os75/oc2010_175_43200.raw /home/data/oc464/raw/os75/oc2010_175_50400.raw /home/data/oc464/raw/os75/oc2010_175_57600.raw /home/data/oc464/raw/os75/oc2010_175_64800.raw /home/data/oc464/raw/os75/oc2010_175_72000.raw /home/data/oc464/raw/os75/oc2010_175_79200.raw /home/data/oc464/raw/os75/oc2010_176_00000.raw /home/data/oc464/raw/os75/oc2010_176_07200.raw /home/data/oc464/raw/os75/oc2010_176_14400.raw /home/data/oc464/raw/os75/oc2010_176_21600.raw /home/data/oc464/raw/os75/oc2010_176_28800.raw /home/data/oc464/raw/os75/oc2010_176_36000.raw /home/data/oc464/raw/os75/oc2010_176_43200.raw /home/data/oc464/raw/os75/oc2010_176_50400.raw /home/data/oc464/raw/os75/oc2010_176_57600.raw /home/data/oc464/raw/os75/oc2010_176_64800.raw /home/data/oc464/raw/os75/oc2010_176_72000.raw /home/data/oc464/raw/os75/oc2010_176_79200.raw /home/data/oc464/raw/os75/oc2010_177_00000.raw /home/data/oc464/raw/os75/oc2010_177_07200.raw /home/data/oc464/raw/os75/oc2010_177_14400.raw /home/data/oc464/raw/os75/oc2010_177_21600.raw /home/data/oc464/raw/os75/oc2010_177_28800.raw /home/data/oc464/raw/os75/oc2010_177_36000.raw /home/data/oc464/raw/os75/oc2010_177_43200.raw /home/data/oc464/raw/os75/oc2010_177_50400.raw /home/data/oc464/raw/os75/oc2010_177_57600.raw /home/data/oc464/raw/os75/oc2010_177_64800.raw /home/data/oc464/raw/os75/oc2010_177_72000.raw /home/data/oc464/raw/os75/oc2010_177_79200.raw /home/data/oc464/raw/os75/oc2010_178_00000.raw /home/data/oc464/raw/os75/oc2010_178_07200.raw /home/data/oc464/raw/os75/oc2010_178_14400.raw /home/data/oc464/raw/os75/oc2010_178_21600.raw /home/data/oc464/raw/os75/oc2010_178_28800.raw /home/data/oc464/raw/os75/oc2010_178_36000.raw /home/data/oc464/raw/os75/oc2010_178_43200.raw /home/data/oc464/raw/os75/oc2010_178_50400.raw /home/data/oc464/raw/os75/oc2010_178_57600.raw /home/data/oc464/raw/os75/oc2010_178_64800.raw 2010-06-28 18:57:11,440 DEBUG quick_adcp LASTFILES invoked. using only 76 files from end of filelist 2010-06-28 18:57:11,441 DEBUG quick_adcp using delblks = 1 2010-06-28 18:57:11,441 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/oc464/raw/os75/oc2010_172_44822.raw /home/data/oc464/raw/os75/oc2010_172_50400.raw /home/data/oc464/raw/os75/oc2010_172_57600.raw /home/data/oc464/raw/os75/oc2010_172_64800.raw /home/data/oc464/raw/os75/oc2010_172_72000.raw /home/data/oc464/raw/os75/oc2010_172_79200.raw /home/data/oc464/raw/os75/oc2010_173_00000.raw /home/data/oc464/raw/os75/oc2010_173_07200.raw /home/data/oc464/raw/os75/oc2010_173_14400.raw /home/data/oc464/raw/os75/oc2010_173_21600.raw /home/data/oc464/raw/os75/oc2010_173_28800.raw /home/data/oc464/raw/os75/oc2010_173_36000.raw /home/data/oc464/raw/os75/oc2010_173_43200.raw /home/data/oc464/raw/os75/oc2010_173_50400.raw /home/data/oc464/raw/os75/oc2010_173_57600.raw /home/data/oc464/raw/os75/oc2010_173_64800.raw /home/data/oc464/raw/os75/oc2010_173_72000.raw /home/data/oc464/raw/os75/oc2010_173_79200.raw /home/data/oc464/raw/os75/oc2010_174_00000.raw /home/data/oc464/raw/os75/oc2010_174_07200.raw /home/data/oc464/raw/os75/oc2010_174_14400.raw /home/data/oc464/raw/os75/oc2010_174_21600.raw /home/data/oc464/raw/os75/oc2010_174_28800.raw /home/data/oc464/raw/os75/oc2010_174_36000.raw /home/data/oc464/raw/os75/oc2010_174_43200.raw /home/data/oc464/raw/os75/oc2010_174_50400.raw /home/data/oc464/raw/os75/oc2010_174_57600.raw /home/data/oc464/raw/os75/oc2010_174_64800.raw /home/data/oc464/raw/os75/oc2010_174_72000.raw /home/data/oc464/raw/os75/oc2010_174_79200.raw /home/data/oc464/raw/os75/oc2010_175_00000.raw /home/data/oc464/raw/os75/oc2010_175_07200.raw /home/data/oc464/raw/os75/oc2010_175_14400.raw /home/data/oc464/raw/os75/oc2010_175_21600.raw /home/data/oc464/raw/os75/oc2010_175_28800.raw /home/data/oc464/raw/os75/oc2010_175_36000.raw /home/data/oc464/raw/os75/oc2010_175_43200.raw /home/data/oc464/raw/os75/oc2010_175_50400.raw /home/data/oc464/raw/os75/oc2010_175_57600.raw /home/data/oc464/raw/os75/oc2010_175_64800.raw /home/data/oc464/raw/os75/oc2010_175_72000.raw /home/data/oc464/raw/os75/oc2010_175_79200.raw /home/data/oc464/raw/os75/oc2010_176_00000.raw /home/data/oc464/raw/os75/oc2010_176_07200.raw /home/data/oc464/raw/os75/oc2010_176_14400.raw /home/data/oc464/raw/os75/oc2010_176_21600.raw /home/data/oc464/raw/os75/oc2010_176_28800.raw /home/data/oc464/raw/os75/oc2010_176_36000.raw /home/data/oc464/raw/os75/oc2010_176_43200.raw /home/data/oc464/raw/os75/oc2010_176_50400.raw /home/data/oc464/raw/os75/oc2010_176_57600.raw /home/data/oc464/raw/os75/oc2010_176_64800.raw /home/data/oc464/raw/os75/oc2010_176_72000.raw /home/data/oc464/raw/os75/oc2010_176_79200.raw /home/data/oc464/raw/os75/oc2010_177_00000.raw /home/data/oc464/raw/os75/oc2010_177_07200.raw /home/data/oc464/raw/os75/oc2010_177_14400.raw /home/data/oc464/raw/os75/oc2010_177_21600.raw /home/data/oc464/raw/os75/oc2010_177_28800.raw /home/data/oc464/raw/os75/oc2010_177_36000.raw /home/data/oc464/raw/os75/oc2010_177_43200.raw /home/data/oc464/raw/os75/oc2010_177_50400.raw /home/data/oc464/raw/os75/oc2010_177_57600.raw /home/data/oc464/raw/os75/oc2010_177_64800.raw /home/data/oc464/raw/os75/oc2010_177_72000.raw /home/data/oc464/raw/os75/oc2010_177_79200.raw /home/data/oc464/raw/os75/oc2010_178_00000.raw /home/data/oc464/raw/os75/oc2010_178_07200.raw /home/data/oc464/raw/os75/oc2010_178_14400.raw /home/data/oc464/raw/os75/oc2010_178_21600.raw /home/data/oc464/raw/os75/oc2010_178_28800.raw /home/data/oc464/raw/os75/oc2010_178_36000.raw /home/data/oc464/raw/os75/oc2010_178_43200.raw /home/data/oc464/raw/os75/oc2010_178_50400.raw /home/data/oc464/raw/os75/oc2010_178_57600.raw /home/data/oc464/raw/os75/oc2010_178_64800.raw 2010-06-28 18:57:11,443 DEBUG quick_adcp Mon Jun 28 18:57:11 2010 running quick_adcp.py as follows: --cntfile /home/data/oc464/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_oc cbasename contour dbname a_oc dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 28 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_oc allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase oc464 cfgpath /home/data/oc464/proc/os75nb/config cntfile /home/data/oc464/proc/os75nb/os75nb_qpy.cnt commands None cruisename oc464 data_def vmadcp.def datadir /home/data/oc464/raw/os75 datafile_glob *.raw datatype uhdas dbname a_oc dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/oc464/raw/os75/oc2010_172_44822.raw', '/home/data/oc464/raw/os75/oc2010_172_50400.raw', '/home/data/oc464/raw/os75/oc2010_172_57600.raw', '/home/data/oc464/raw/os75/oc2010_172_64800.raw', '/home/data/oc464/raw/os75/oc2010_172_72000.raw', '/home/data/oc464/raw/os75/oc2010_172_79200.raw', '/home/data/oc464/raw/os75/oc2010_173_00000.raw', '/home/data/oc464/raw/os75/oc2010_173_07200.raw', '/home/data/oc464/raw/os75/oc2010_173_14400.raw', '/home/data/oc464/raw/os75/oc2010_173_21600.raw', '/home/data/oc464/raw/os75/oc2010_173_28800.raw', '/home/data/oc464/raw/os75/oc2010_173_36000.raw', '/home/data/oc464/raw/os75/oc2010_173_43200.raw', '/home/data/oc464/raw/os75/oc2010_173_50400.raw', '/home/data/oc464/raw/os75/oc2010_173_57600.raw', '/home/data/oc464/raw/os75/oc2010_173_64800.raw', '/home/data/oc464/raw/os75/oc2010_173_72000.raw', '/home/data/oc464/raw/os75/oc2010_173_79200.raw', '/home/data/oc464/raw/os75/oc2010_174_00000.raw', '/home/data/oc464/raw/os75/oc2010_174_07200.raw', '/home/data/oc464/raw/os75/oc2010_174_14400.raw', '/home/data/oc464/raw/os75/oc2010_174_21600.raw', '/home/data/oc464/raw/os75/oc2010_174_28800.raw', '/home/data/oc464/raw/os75/oc2010_174_36000.raw', '/home/data/oc464/raw/os75/oc2010_174_43200.raw', '/home/data/oc464/raw/os75/oc2010_174_50400.raw', '/home/data/oc464/raw/os75/oc2010_174_57600.raw', '/home/data/oc464/raw/os75/oc2010_174_64800.raw', '/home/data/oc464/raw/os75/oc2010_174_72000.raw', '/home/data/oc464/raw/os75/oc2010_174_79200.raw', '/home/data/oc464/raw/os75/oc2010_175_00000.raw', '/home/data/oc464/raw/os75/oc2010_175_07200.raw', '/home/data/oc464/raw/os75/oc2010_175_14400.raw', '/home/data/oc464/raw/os75/oc2010_175_21600.raw', '/home/data/oc464/raw/os75/oc2010_175_28800.raw', '/home/data/oc464/raw/os75/oc2010_175_36000.raw', '/home/data/oc464/raw/os75/oc2010_175_43200.raw', '/home/data/oc464/raw/os75/oc2010_175_50400.raw', '/home/data/oc464/raw/os75/oc2010_175_57600.raw', '/home/data/oc464/raw/os75/oc2010_175_64800.raw', '/home/data/oc464/raw/os75/oc2010_175_72000.raw', '/home/data/oc464/raw/os75/oc2010_175_79200.raw', '/home/data/oc464/raw/os75/oc2010_176_00000.raw', '/home/data/oc464/raw/os75/oc2010_176_07200.raw', '/home/data/oc464/raw/os75/oc2010_176_14400.raw', '/home/data/oc464/raw/os75/oc2010_176_21600.raw', '/home/data/oc464/raw/os75/oc2010_176_28800.raw', '/home/data/oc464/raw/os75/oc2010_176_36000.raw', '/home/data/oc464/raw/os75/oc2010_176_43200.raw', '/home/data/oc464/raw/os75/oc2010_176_50400.raw', '/home/data/oc464/raw/os75/oc2010_176_57600.raw', '/home/data/oc464/raw/os75/oc2010_176_64800.raw', '/home/data/oc464/raw/os75/oc2010_176_72000.raw', '/home/data/oc464/raw/os75/oc2010_176_79200.raw', '/home/data/oc464/raw/os75/oc2010_177_00000.raw', '/home/data/oc464/raw/os75/oc2010_177_07200.raw', '/home/data/oc464/raw/os75/oc2010_177_14400.raw', '/home/data/oc464/raw/os75/oc2010_177_21600.raw', '/home/data/oc464/raw/os75/oc2010_177_28800.raw', '/home/data/oc464/raw/os75/oc2010_177_36000.raw', '/home/data/oc464/raw/os75/oc2010_177_43200.raw', '/home/data/oc464/raw/os75/oc2010_177_50400.raw', '/home/data/oc464/raw/os75/oc2010_177_57600.raw', '/home/data/oc464/raw/os75/oc2010_177_64800.raw', '/home/data/oc464/raw/os75/oc2010_177_72000.raw', '/home/data/oc464/raw/os75/oc2010_177_79200.raw', '/home/data/oc464/raw/os75/oc2010_178_00000.raw', '/home/data/oc464/raw/os75/oc2010_178_07200.raw', '/home/data/oc464/raw/os75/oc2010_178_14400.raw', '/home/data/oc464/raw/os75/oc2010_178_21600.raw', '/home/data/oc464/raw/os75/oc2010_178_28800.raw', '/home/data/oc464/raw/os75/oc2010_178_36000.raw', '/home/data/oc464/raw/os75/oc2010_178_43200.raw', '/home/data/oc464/raw/os75/oc2010_178_50400.raw', '/home/data/oc464/raw/os75/oc2010_178_57600.raw', '/home/data/oc464/raw/os75/oc2010_178_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 28 fixfile a_oc.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'oc464',... 'cfgpath' , '/home/data/oc464/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_oc.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2010 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/oc464/raw/os75/oc2010_172_44822.raw', '/home/data/oc464/raw/os75/oc2010_172_50400.raw', '/home/data/oc464/raw/os75/oc2010_172_57600.raw', '/home/data/oc464/raw/os75/oc2010_172_64800.raw', '/home/data/oc464/raw/os75/oc2010_172_72000.raw', '/home/data/oc464/raw/os75/oc2010_172_79200.raw', '/home/data/oc464/raw/os75/oc2010_173_00000.raw', '/home/data/oc464/raw/os75/oc2010_173_07200.raw', '/home/data/oc464/raw/os75/oc2010_173_14400.raw', '/home/data/oc464/raw/os75/oc2010_173_21600.raw', '/home/data/oc464/raw/os75/oc2010_173_28800.raw', '/home/data/oc464/raw/os75/oc2010_173_36000.raw', '/home/data/oc464/raw/os75/oc2010_173_43200.raw', '/home/data/oc464/raw/os75/oc2010_173_50400.raw', '/home/data/oc464/raw/os75/oc2010_173_57600.raw', '/home/data/oc464/raw/os75/oc2010_173_64800.raw', '/home/data/oc464/raw/os75/oc2010_173_72000.raw', '/home/data/oc464/raw/os75/oc2010_173_79200.raw', '/home/data/oc464/raw/os75/oc2010_174_00000.raw', '/home/data/oc464/raw/os75/oc2010_174_07200.raw', '/home/data/oc464/raw/os75/oc2010_174_14400.raw', '/home/data/oc464/raw/os75/oc2010_174_21600.raw', '/home/data/oc464/raw/os75/oc2010_174_28800.raw', '/home/data/oc464/raw/os75/oc2010_174_36000.raw', '/home/data/oc464/raw/os75/oc2010_174_43200.raw', '/home/data/oc464/raw/os75/oc2010_174_50400.raw', '/home/data/oc464/raw/os75/oc2010_174_57600.raw', '/home/data/oc464/raw/os75/oc2010_174_64800.raw', '/home/data/oc464/raw/os75/oc2010_174_72000.raw', '/home/data/oc464/raw/os75/oc2010_174_79200.raw', '/home/data/oc464/raw/os75/oc2010_175_00000.raw', '/home/data/oc464/raw/os75/oc2010_175_07200.raw', '/home/data/oc464/raw/os75/oc2010_175_14400.raw', '/home/data/oc464/raw/os75/oc2010_175_21600.raw', '/home/data/oc464/raw/os75/oc2010_175_28800.raw', '/home/data/oc464/raw/os75/oc2010_175_36000.raw', '/home/data/oc464/raw/os75/oc2010_175_43200.raw', '/home/data/oc464/raw/os75/oc2010_175_50400.raw', '/home/data/oc464/raw/os75/oc2010_175_57600.raw', '/home/data/oc464/raw/os75/oc2010_175_64800.raw', '/home/data/oc464/raw/os75/oc2010_175_72000.raw', '/home/data/oc464/raw/os75/oc2010_175_79200.raw', '/home/data/oc464/raw/os75/oc2010_176_00000.raw', '/home/data/oc464/raw/os75/oc2010_176_07200.raw', '/home/data/oc464/raw/os75/oc2010_176_14400.raw', '/home/data/oc464/raw/os75/oc2010_176_21600.raw', '/home/data/oc464/raw/os75/oc2010_176_28800.raw', '/home/data/oc464/raw/os75/oc2010_176_36000.raw', '/home/data/oc464/raw/os75/oc2010_176_43200.raw', '/home/data/oc464/raw/os75/oc2010_176_50400.raw', '/home/data/oc464/raw/os75/oc2010_176_57600.raw', '/home/data/oc464/raw/os75/oc2010_176_64800.raw', '/home/data/oc464/raw/os75/oc2010_176_72000.raw', '/home/data/oc464/raw/os75/oc2010_176_79200.raw', '/home/data/oc464/raw/os75/oc2010_177_00000.raw', '/home/data/oc464/raw/os75/oc2010_177_07200.raw', '/home/data/oc464/raw/os75/oc2010_177_14400.raw', '/home/data/oc464/raw/os75/oc2010_177_21600.raw', '/home/data/oc464/raw/os75/oc2010_177_28800.raw', '/home/data/oc464/raw/os75/oc2010_177_36000.raw', '/home/data/oc464/raw/os75/oc2010_177_43200.raw', '/home/data/oc464/raw/os75/oc2010_177_50400.raw', '/home/data/oc464/raw/os75/oc2010_177_57600.raw', '/home/data/oc464/raw/os75/oc2010_177_64800.raw', '/home/data/oc464/raw/os75/oc2010_177_72000.raw', '/home/data/oc464/raw/os75/oc2010_177_79200.raw', '/home/data/oc464/raw/os75/oc2010_178_00000.raw', '/home/data/oc464/raw/os75/oc2010_178_07200.raw', '/home/data/oc464/raw/os75/oc2010_178_14400.raw', '/home/data/oc464/raw/os75/oc2010_178_21600.raw', '/home/data/oc464/raw/os75/oc2010_178_28800.raw', '/home/data/oc464/raw/os75/oc2010_178_36000.raw', '/home/data/oc464/raw/os75/oc2010_178_43200.raw', '/home/data/oc464/raw/os75/oc2010_178_50400.raw', '/home/data/oc464/raw/os75/oc2010_178_57600.raw', '/home/data/oc464/raw/os75/oc2010_178_64800.raw'] setup_info False skip_avg True smfile a_oc_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit 0 vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-06-28 18:57:11,443 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-06-28 18:57:11,444 DEBUG quick_run scanning files for time ranges... 2010-06-28 18:57:11,444 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb/scan 2010-06-28 18:57:11,444 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/scan 2010-06-28 18:57:11,444 DEBUG quick_setup running python command "scanraw" 2010-06-28 18:57:11,445 DEBUG call_matlab --> clear all 2010-06-28 18:57:11,450 DEBUG call_matlab <-- >> 2010-06-28 18:57:11,450 DEBUG call_matlab --> close all 2010-06-28 18:57:11,519 DEBUG call_matlab <-- >> 2010-06-28 18:57:11,519 DEBUG call_matlab --> cd /home/data/oc464/proc/os75nb/scan 2010-06-28 18:57:11,521 DEBUG call_matlab <-- >> 2010-06-28 18:57:11,522 DEBUG call_matlab --> scan_tmp 2010-06-28 18:57:12,522 DEBUG call_matlab <-- getting config files from "/home/data/oc464/proc/os75nb/config" running "oc464_cfg.m" running "oc464_proc.m" writing scan info to a_oc.scn >> 2010-06-28 18:57:12,522 DEBUG quick_run writing time range from a_oc.scn to a_oc.tr 2010-06-28 18:57:12,523 DEBUG quick_run getting scan time range 2010-06-28 18:57:12,523 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,523 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/scan 2010-06-28 18:57:12,523 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,523 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,525 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,526 DEBUG quick_subs start_end_time 2010/06/22 12:27:05 to 2010/06/28 18:56:01 2010-06-28 18:57:12,527 DEBUG quick_subs dd0: 172.518808 dd1: 178.788900 2010-06-28 18:57:12,527 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,527 DEBUG quick_adcp looking for database with adcpdb/a_oc*.blk 2010-06-28 18:57:12,528 DEBUG quick_adcp database found: listing blocks 2010-06-28 18:57:12,528 DEBUG quick_subs removing a_ocdir.blk 2010-06-28 18:57:12,529 DEBUG quick_subs about to run mkblkdir 2010-06-28 18:57:12,529 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-06-28 18:57:12,530 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-06-28 18:57:12,543 DEBUG quick_subs database passes. 2010-06-28 18:57:12,544 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-06-28 18:57:12,544 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,544 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,545 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,545 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,545 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,546 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 18:25:41 2010-06-28 18:57:12,546 DEBUG quick_subs dd0: 172.522326 dd1: 178.767836 2010-06-28 18:57:12,546 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-06-28 18:57:12,547 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,547 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,547 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,547 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,548 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,548 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 18:25:41 2010-06-28 18:57:12,548 DEBUG quick_subs dd0: 172.522326 dd1: 178.767836 2010-06-28 18:57:12,549 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-06-28 18:57:12,549 DEBUG quick_adcp origdb_time_range is 2010/06/22 12:32:09 to 2010/06/28 18:25:41 2010-06-28 18:57:12,549 DEBUG quick_adcp (172.522326 to 178.767836) 2010-06-28 18:57:12,550 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-06-28 18:57:12,550 DEBUG quick_subs getting current (remaining after deletion) database times 2010-06-28 18:57:12,550 DEBUG quick_subs ['adcpdb/a_oc008.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc004.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_ocdir.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc012.blk', 'adcpdb/a_oc013.blk', 'adcpdb/a_oc003.blk'] 2010-06-28 18:57:12,550 DEBUG quick_subs length is 14 2010-06-28 18:57:12,551 DEBUG quick_subs removing a_ocdir.blk 2010-06-28 18:57:12,551 DEBUG quick_subs about to run mkblkdir 2010-06-28 18:57:12,551 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-06-28 18:57:12,552 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-06-28 18:57:12,566 DEBUG quick_subs database passes. 2010-06-28 18:57:12,567 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-06-28 18:57:12,567 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,567 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,567 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,568 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,568 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,569 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 18:25:41 2010-06-28 18:57:12,569 DEBUG quick_subs dd0: 172.522326 dd1: 178.767836 2010-06-28 18:57:12,569 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,569 DEBUG quick_subs reading time range 2010-06-28 18:57:12,570 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 18:25:41 2010-06-28 18:57:12,570 DEBUG quick_subs dd0: 172.522326 dd1: 178.767836 2010-06-28 18:57:12,571 INFO quick_subs Mon Jun 28 18:57:12 2010 2010-06-28 18:57:12,571 INFO quick_subs checking database time range by listblk 2010-06-28 18:57:12,571 DEBUG quick_subs removing a_ocdir.blk 2010-06-28 18:57:12,572 DEBUG quick_subs about to run mkblkdir 2010-06-28 18:57:12,572 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-06-28 18:57:12,572 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-06-28 18:57:12,585 DEBUG quick_subs database passes. 2010-06-28 18:57:12,585 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-06-28 18:57:12,585 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,586 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,586 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,586 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,587 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,587 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 18:25:41 2010-06-28 18:57:12,587 DEBUG quick_subs dd0: 172.522326 dd1: 178.767836 2010-06-28 18:57:12,589 INFO quick_subs found line /* 0 n= 146 a_oc001.blk */ 2010/06/22 12:32:09 to 2010/06/23 00:39:58 2010-06-28 18:57:12,590 INFO quick_subs found line /* 1 n= 146 a_oc002.blk */ 2010/06/23 00:44:59 to 2010/06/23 12:53:09 2010-06-28 18:57:12,590 INFO quick_subs found line /* 2 n= 146 a_oc003.blk */ 2010/06/23 12:58:10 to 2010/06/24 01:10:39 2010-06-28 18:57:12,590 INFO quick_subs found line /* 3 n= 146 a_oc004.blk */ 2010/06/24 01:15:40 to 2010/06/24 13:23:25 2010-06-28 18:57:12,591 INFO quick_subs found line /* 4 n= 146 a_oc005.blk */ 2010/06/24 13:28:26 to 2010/06/25 01:36:01 2010-06-28 18:57:12,591 INFO quick_subs found line /* 5 n= 146 a_oc006.blk */ 2010/06/25 01:41:03 to 2010/06/25 13:48:41 2010-06-28 18:57:12,591 INFO quick_subs found line /* 6 n= 146 a_oc007.blk */ 2010/06/25 13:53:43 to 2010/06/26 02:01:20 2010-06-28 18:57:12,591 INFO quick_subs found line /* 7 n= 146 a_oc008.blk */ 2010/06/26 02:06:22 to 2010/06/26 14:14:00 2010-06-28 18:57:12,591 INFO quick_subs found line /* 8 n= 146 a_oc009.blk */ 2010/06/26 14:19:01 to 2010/06/27 02:26:34 2010-06-28 18:57:12,592 INFO quick_subs found line /* 9 n= 146 a_oc010.blk */ 2010/06/27 02:31:35 to 2010/06/27 14:39:08 2010-06-28 18:57:12,592 INFO quick_subs found line /* 10 n= 146 a_oc011.blk */ 2010/06/27 14:44:09 to 2010/06/28 02:51:52 2010-06-28 18:57:12,592 INFO quick_subs found line /* 11 n= 146 a_oc012.blk */ 2010/06/28 02:56:54 to 2010/06/28 15:04:57 2010-06-28 18:57:12,592 INFO quick_subs found line /* 12 n= 40 a_oc013.blk */ 2010/06/28 15:09:58 to 2010/06/28 18:25:41 2010-06-28 18:57:12,593 INFO quick_subs scan data start at 172.5188079 2010-06-28 18:57:12,593 INFO quick_subs scan time range: 2010/06/22 12:27:05 to 2010/06/28 18:56:01 2010-06-28 18:57:12,593 INFO quick_subs codasdb ends at 178.7678356 (2010/06/28 18:25:41) 2010-06-28 18:57:12,593 DEBUG quick_subs ... changed dirs, in /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,594 DEBUG quick_subs deleting these files: ['a_oc013.blk'] 2010-06-28 18:57:12,595 DEBUG quick_subs getting current (remaining after deletion) database times 2010-06-28 18:57:12,595 DEBUG quick_subs ['adcpdb/a_oc008.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc004.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc012.blk', 'adcpdb/a_oc003.blk'] 2010-06-28 18:57:12,595 DEBUG quick_subs length is 12 2010-06-28 18:57:12,595 DEBUG quick_subs about to run mkblkdir 2010-06-28 18:57:12,596 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-06-28 18:57:12,596 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-06-28 18:57:12,608 DEBUG quick_subs database passes. 2010-06-28 18:57:12,608 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-06-28 18:57:12,609 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,609 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,609 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,609 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,610 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,610 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 15:04:57 2010-06-28 18:57:12,611 DEBUG quick_subs dd0: 172.522326 dd1: 178.628437 2010-06-28 18:57:12,611 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,611 DEBUG quick_subs reading time range 2010-06-28 18:57:12,612 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 15:04:57 2010-06-28 18:57:12,612 DEBUG quick_subs dd0: 172.522326 dd1: 178.628437 2010-06-28 18:57:12,612 DEBUG quick_subs codas database currently goes from 2010/06/22 12:32:09 to 2010/06/28 15:04:57 2010-06-28 18:57:12,612 DEBUG quick_subs (172.522326 to 178.628437) 2010-06-28 18:57:12,615 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012 2010-06-28 18:57:12,617 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 2010-06-28 18:57:12,617 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012'] 2010-06-28 18:57:12,617 DEBUG quick_subs checked: unloaded blkstrs: ['013'] 2010-06-28 18:57:12,617 DEBUG quick_subs first unloaded file is load/ens_blk013.cmd 2010-06-28 18:57:12,618 DEBUG quick_subs data goes from 2010/06/28 15:09:58 to 2010/06/28 18:56:01 2010-06-28 18:57:12,618 DEBUG quick_subs (178.631921 to 178.788900) 2010-06-28 18:57:12,619 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/oc464/raw/os75/oc2010_172_44822.raw /home/data/oc464/raw/os75/oc2010_172_50400.raw /home/data/oc464/raw/os75/oc2010_172_57600.raw /home/data/oc464/raw/os75/oc2010_172_64800.raw /home/data/oc464/raw/os75/oc2010_172_72000.raw /home/data/oc464/raw/os75/oc2010_172_79200.raw /home/data/oc464/raw/os75/oc2010_173_00000.raw /home/data/oc464/raw/os75/oc2010_173_07200.raw /home/data/oc464/raw/os75/oc2010_173_14400.raw /home/data/oc464/raw/os75/oc2010_173_21600.raw /home/data/oc464/raw/os75/oc2010_173_28800.raw /home/data/oc464/raw/os75/oc2010_173_36000.raw /home/data/oc464/raw/os75/oc2010_173_43200.raw /home/data/oc464/raw/os75/oc2010_173_50400.raw /home/data/oc464/raw/os75/oc2010_173_57600.raw /home/data/oc464/raw/os75/oc2010_173_64800.raw /home/data/oc464/raw/os75/oc2010_173_72000.raw /home/data/oc464/raw/os75/oc2010_173_79200.raw /home/data/oc464/raw/os75/oc2010_174_00000.raw /home/data/oc464/raw/os75/oc2010_174_07200.raw /home/data/oc464/raw/os75/oc2010_174_14400.raw /home/data/oc464/raw/os75/oc2010_174_21600.raw /home/data/oc464/raw/os75/oc2010_174_28800.raw /home/data/oc464/raw/os75/oc2010_174_36000.raw /home/data/oc464/raw/os75/oc2010_174_43200.raw /home/data/oc464/raw/os75/oc2010_174_50400.raw /home/data/oc464/raw/os75/oc2010_174_57600.raw /home/data/oc464/raw/os75/oc2010_174_64800.raw /home/data/oc464/raw/os75/oc2010_174_72000.raw /home/data/oc464/raw/os75/oc2010_174_79200.raw /home/data/oc464/raw/os75/oc2010_175_00000.raw /home/data/oc464/raw/os75/oc2010_175_07200.raw /home/data/oc464/raw/os75/oc2010_175_14400.raw /home/data/oc464/raw/os75/oc2010_175_21600.raw /home/data/oc464/raw/os75/oc2010_175_28800.raw /home/data/oc464/raw/os75/oc2010_175_36000.raw /home/data/oc464/raw/os75/oc2010_175_43200.raw /home/data/oc464/raw/os75/oc2010_175_50400.raw /home/data/oc464/raw/os75/oc2010_175_57600.raw /home/data/oc464/raw/os75/oc2010_175_64800.raw /home/data/oc464/raw/os75/oc2010_175_72000.raw /home/data/oc464/raw/os75/oc2010_175_79200.raw /home/data/oc464/raw/os75/oc2010_176_00000.raw /home/data/oc464/raw/os75/oc2010_176_07200.raw /home/data/oc464/raw/os75/oc2010_176_14400.raw /home/data/oc464/raw/os75/oc2010_176_21600.raw /home/data/oc464/raw/os75/oc2010_176_28800.raw /home/data/oc464/raw/os75/oc2010_176_36000.raw /home/data/oc464/raw/os75/oc2010_176_43200.raw /home/data/oc464/raw/os75/oc2010_176_50400.raw /home/data/oc464/raw/os75/oc2010_176_57600.raw /home/data/oc464/raw/os75/oc2010_176_64800.raw /home/data/oc464/raw/os75/oc2010_176_72000.raw 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/home/data/oc464/raw/os75/oc2010_178_57600.raw /home/data/oc464/raw/os75/oc2010_178_64800.raw 2010-06-28 18:57:12,619 INFO quick_run Mon Jun 28 18:57:12 2010 2010-06-28 18:57:12,619 INFO quick_run about to load uhdas files 2010-06-28 18:57:12,619 INFO quick_run /home/data/oc464/raw/os75/oc2010_172_44822.raw /home/data/oc464/raw/os75/oc2010_172_50400.raw /home/data/oc464/raw/os75/oc2010_172_57600.raw /home/data/oc464/raw/os75/oc2010_172_64800.raw /home/data/oc464/raw/os75/oc2010_172_72000.raw /home/data/oc464/raw/os75/oc2010_172_79200.raw /home/data/oc464/raw/os75/oc2010_173_00000.raw /home/data/oc464/raw/os75/oc2010_173_07200.raw /home/data/oc464/raw/os75/oc2010_173_14400.raw /home/data/oc464/raw/os75/oc2010_173_21600.raw /home/data/oc464/raw/os75/oc2010_173_28800.raw /home/data/oc464/raw/os75/oc2010_173_36000.raw /home/data/oc464/raw/os75/oc2010_173_43200.raw /home/data/oc464/raw/os75/oc2010_173_50400.raw /home/data/oc464/raw/os75/oc2010_173_57600.raw /home/data/oc464/raw/os75/oc2010_173_64800.raw /home/data/oc464/raw/os75/oc2010_173_72000.raw /home/data/oc464/raw/os75/oc2010_173_79200.raw /home/data/oc464/raw/os75/oc2010_174_00000.raw /home/data/oc464/raw/os75/oc2010_174_07200.raw /home/data/oc464/raw/os75/oc2010_174_14400.raw /home/data/oc464/raw/os75/oc2010_174_21600.raw /home/data/oc464/raw/os75/oc2010_174_28800.raw /home/data/oc464/raw/os75/oc2010_174_36000.raw /home/data/oc464/raw/os75/oc2010_174_43200.raw /home/data/oc464/raw/os75/oc2010_174_50400.raw /home/data/oc464/raw/os75/oc2010_174_57600.raw /home/data/oc464/raw/os75/oc2010_174_64800.raw /home/data/oc464/raw/os75/oc2010_174_72000.raw /home/data/oc464/raw/os75/oc2010_174_79200.raw /home/data/oc464/raw/os75/oc2010_175_00000.raw /home/data/oc464/raw/os75/oc2010_175_07200.raw /home/data/oc464/raw/os75/oc2010_175_14400.raw /home/data/oc464/raw/os75/oc2010_175_21600.raw /home/data/oc464/raw/os75/oc2010_175_28800.raw /home/data/oc464/raw/os75/oc2010_175_36000.raw /home/data/oc464/raw/os75/oc2010_175_43200.raw /home/data/oc464/raw/os75/oc2010_175_50400.raw /home/data/oc464/raw/os75/oc2010_175_57600.raw /home/data/oc464/raw/os75/oc2010_175_64800.raw /home/data/oc464/raw/os75/oc2010_175_72000.raw /home/data/oc464/raw/os75/oc2010_175_79200.raw /home/data/oc464/raw/os75/oc2010_176_00000.raw /home/data/oc464/raw/os75/oc2010_176_07200.raw /home/data/oc464/raw/os75/oc2010_176_14400.raw /home/data/oc464/raw/os75/oc2010_176_21600.raw /home/data/oc464/raw/os75/oc2010_176_28800.raw /home/data/oc464/raw/os75/oc2010_176_36000.raw /home/data/oc464/raw/os75/oc2010_176_43200.raw /home/data/oc464/raw/os75/oc2010_176_50400.raw /home/data/oc464/raw/os75/oc2010_176_57600.raw /home/data/oc464/raw/os75/oc2010_176_64800.raw /home/data/oc464/raw/os75/oc2010_176_72000.raw /home/data/oc464/raw/os75/oc2010_176_79200.raw /home/data/oc464/raw/os75/oc2010_177_00000.raw /home/data/oc464/raw/os75/oc2010_177_07200.raw /home/data/oc464/raw/os75/oc2010_177_14400.raw /home/data/oc464/raw/os75/oc2010_177_21600.raw /home/data/oc464/raw/os75/oc2010_177_28800.raw /home/data/oc464/raw/os75/oc2010_177_36000.raw /home/data/oc464/raw/os75/oc2010_177_43200.raw /home/data/oc464/raw/os75/oc2010_177_50400.raw /home/data/oc464/raw/os75/oc2010_177_57600.raw /home/data/oc464/raw/os75/oc2010_177_64800.raw /home/data/oc464/raw/os75/oc2010_177_72000.raw /home/data/oc464/raw/os75/oc2010_177_79200.raw /home/data/oc464/raw/os75/oc2010_178_00000.raw /home/data/oc464/raw/os75/oc2010_178_07200.raw /home/data/oc464/raw/os75/oc2010_178_14400.raw /home/data/oc464/raw/os75/oc2010_178_21600.raw /home/data/oc464/raw/os75/oc2010_178_28800.raw /home/data/oc464/raw/os75/oc2010_178_36000.raw /home/data/oc464/raw/os75/oc2010_178_43200.raw /home/data/oc464/raw/os75/oc2010_178_50400.raw /home/data/oc464/raw/os75/oc2010_178_57600.raw /home/data/oc464/raw/os75/oc2010_178_64800.raw 2010-06-28 18:57:12,620 DEBUG quick_setup load/ldcodas.tmp exists 2010-06-28 18:57:12,620 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,620 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/load 2010-06-28 18:57:12,620 DEBUG quick_setup running python command "ldcodas" 2010-06-28 18:57:12,620 DEBUG quick_subs in /home/data/oc464/proc/os75nb/load 2010-06-28 18:57:12,621 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012'] 2010-06-28 18:57:12,622 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013'] 2010-06-28 18:57:12,622 DEBUG quick_subs starttime is 2010/06/28 15:09:58 2010-06-28 18:57:12,623 DEBUG quick_subs RESETTING thisload_time_range 2010-06-28 18:57:12,623 DEBUG quick_subs time range of data to be loaded: 2010/06/28 15:09:58 to 2010/06/28 18:56:01 2010-06-28 18:57:12,623 DEBUG quick_subs data startdd 178.631921 data enddd 178.788900 2010-06-28 18:57:12,623 DEBUG quick_subs about to load from these cmd files ['ens_blk013.cmd'] 2010-06-28 18:57:12,623 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_oc DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk013.cmd 2010-06-28 18:57:12,624 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-06-28 18:57:12,648 DEBUG quick_subs removing a_ocdir.blk 2010-06-28 18:57:12,649 DEBUG quick_subs about to run mkblkdir 2010-06-28 18:57:12,649 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-06-28 18:57:12,650 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-06-28 18:57:12,664 DEBUG quick_subs database passes. 2010-06-28 18:57:12,665 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-06-28 18:57:12,665 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,666 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,666 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,666 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,667 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,667 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 18:55:47 2010-06-28 18:57:12,668 DEBUG quick_subs dd0: 172.522326 dd1: 178.788738 2010-06-28 18:57:12,668 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-06-28 18:57:12,668 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,668 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,669 DEBUG quick_setup running python command "get_time_range" 2010-06-28 18:57:12,669 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-06-28 18:57:12,669 DEBUG quick_subs extracting time range 2010-06-28 18:57:12,670 DEBUG quick_subs start_end_time 2010/06/22 12:32:09 to 2010/06/28 18:55:47 2010-06-28 18:57:12,670 DEBUG quick_subs dd0: 172.522326 dd1: 178.788738 2010-06-28 18:57:12,670 DEBUG quick_adcp loaded_time_range is 2010/06/22 12:32:09 to 2010/06/28 18:55:47 2010-06-28 18:57:12,671 DEBUG quick_adcp (172.522326 to 178.788738) 2010-06-28 18:57:12,671 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,671 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/adcpdb 2010-06-28 18:57:12,671 DEBUG quick_setup running python command "lst_conf" 2010-06-28 18:57:12,672 DEBUG quick_subs dbname: a_oc output: a_oc.cnh time_ranges: all 2010-06-28 18:57:12,672 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-06-28 18:57:12,691 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-06-28 18:57:12,692 DEBUG quick_run executing commands from /home/data/oc464/proc/os75nb/edit 2010-06-28 18:57:12,692 DEBUG quick_run setup.m exists. not replacing 2010-06-28 18:57:12,692 DEBUG quick_run asetup.m exists. not replacing 2010-06-28 18:57:12,692 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-06-28 18:57:12,693 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-06-28 18:57:12,693 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,693 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/edit 2010-06-28 18:57:12,693 DEBUG quick_setup running python command "setflags" 2010-06-28 18:57:12,694 DEBUG quick_subs dbname: ../adcpdb/a_oc pg_min: 50 set_range_bit time_ranges: all 2010-06-28 18:57:12,694 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-06-28 18:57:12,731 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-06-28 18:57:12,731 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,731 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:12,732 DEBUG quick_setup running python command "catnav" 2010-06-28 18:57:12,735 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-06-28 18:57:12,735 DEBUG quick_run hcorr_inst is ashtech 2010-06-28 18:57:12,735 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-06-28 18:57:12,736 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:12,736 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/cal/rotate 2010-06-28 18:57:12,736 DEBUG quick_setup running python command "lst_hdg" 2010-06-28 18:57:12,736 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-06-28 18:57:12,737 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-06-28 18:57:12,774 DEBUG quick_mpl Starting plot: hcorr 2010-06-28 18:57:12,835 DEBUG quick_mplplots found 6.266417 days of data 2010-06-28 18:57:12,835 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-06-28 18:57:12,835 DEBUG quick_mplplots printing 2 pages 2010-06-28 18:57:14,574 DEBUG quick_mpl Ending plot: hcorr 2010-06-28 18:57:14,574 DEBUG quick_run ------------ step 7: rotate ------------- 2010-06-28 18:57:14,575 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:14,575 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/cal/rotate 2010-06-28 18:57:14,575 DEBUG quick_setup running python command "rotated" 2010-06-28 18:57:14,608 DEBUG quick_subs last rotated time from log file: 2010/06/28 18:25:56 2010-06-28 18:57:14,608 DEBUG quick_subs time range of currently loaded data: 2010/06/22 12:32:09 to 2010/06/28 18:55:47 2010-06-28 18:57:14,608 DEBUG quick_subs (172.522326 to 178.788738) 2010-06-28 18:57:14,609 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-06-28 18:57:14,610 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:14,610 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/cal/rotate 2010-06-28 18:57:14,610 DEBUG quick_setup running python command "rotate" 2010-06-28 18:57:14,610 DEBUG quick_subs DB_NAME: ../../adcpdb/a_oc LOG_FILE: rotate.log TIME_RANGE: 2010/06/28 15:09:58 to 2010/06/28 18:56:01 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-06-28 18:57:14,611 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-06-28 18:57:14,618 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-06-28 18:57:14,619 DEBUG quick_setup nav/as_nav.tmp exists 2010-06-28 18:57:14,619 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:14,619 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:14,620 DEBUG quick_setup running python command "as_nav" 2010-06-28 18:57:14,620 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/06/22 12:32:09 to 2010/06/28 18:55:47 /* the whole time range */ 2010-06-28 18:57:14,620 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-06-28 18:57:14,679 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-06-28 18:57:14,680 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:14,680 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:14,680 DEBUG quick_setup running python command "refabs" 2010-06-28 18:57:14,680 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-06-28 18:57:14,681 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-06-28 18:57:14,727 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-06-28 18:57:14,727 DEBUG quick_setup nav/smoothr.tmp exists 2010-06-28 18:57:14,728 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:14,728 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:14,728 DEBUG quick_setup running python command "smoothr" 2010-06-28 18:57:14,728 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-06-28 18:57:14,729 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-06-28 18:57:14,931 DEBUG quick_adcp about to run numpy refsm 2010-06-28 18:57:14,932 DEBUG quick_npy Starting: refsm 2010-06-28 18:57:15,075 INFO nav dtmin = -0.50 dtmax = 0.50 2010-06-28 18:57:15,707 DEBUG quick_npy Ending: refsm 2010-06-28 18:57:15,707 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-06-28 18:57:15,707 DEBUG quick_setup nav/putnav.tmp exists 2010-06-28 18:57:15,713 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:15,713 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:15,713 DEBUG quick_setup running python command "putnav" 2010-06-28 18:57:15,713 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-06-28 18:57:15,714 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-06-28 18:57:16,124 DEBUG quick_adcp plotting navigation 2010-06-28 18:57:16,125 DEBUG quick_mpl Starting plot: nav 2010-06-28 18:57:17,040 DEBUG quick_mpl Ending plot: nav 2010-06-28 18:57:17,040 DEBUG quick_mpl Starting plot: refl 2010-06-28 18:57:17,177 DEBUG quick_mplplots found 6.259447 days of data 2010-06-28 18:57:17,178 DEBUG quick_mplplots start day is 172.000000 2010-06-28 18:57:17,178 DEBUG quick_mplplots figures with 2.000000 days per page 2010-06-28 18:57:17,178 DEBUG quick_mplplots printing 4 pages 2010-06-28 18:57:17,178 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-06-28 18:57:17,178 INFO quick_mplplots startdd is 172.0 2010-06-28 18:57:17,178 INFO quick_mplplots dt is 2.0 2010-06-28 18:57:21,233 DEBUG quick_mpl Ending plot: refl 2010-06-28 18:57:21,233 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-06-28 18:57:21,233 DEBUG quick_run find profile flags ------------ *** ------------- 2010-06-28 18:57:21,234 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:21,234 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/edit 2010-06-28 18:57:21,234 DEBUG quick_setup running python command "aedit" 2010-06-28 18:57:22,802 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-06-28 18:57:22,803 DEBUG quick_run starting in: /home/data/oc464/proc/os75nb 2010-06-28 18:57:22,803 DEBUG quick_run executing commands from: edit 2010-06-28 18:57:22,807 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_oc abadbin_tmp.asc 2010-06-28 18:57:22,817 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_oc 30 2010-06-28 18:57:22,824 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-06-28 18:57:22,862 DEBUG quick_run changing directories back to /home/data/oc464/proc/os75nb 2010-06-28 18:57:22,863 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-06-28 18:57:22,863 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-06-28 18:57:22,863 DEBUG quick_setup nav/as_nav.tmp exists 2010-06-28 18:57:22,863 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:22,864 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:22,864 DEBUG quick_setup running python command "as_nav" 2010-06-28 18:57:22,864 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/06/22 12:32:09 to 2010/06/28 18:55:47 /* the whole time range */ 2010-06-28 18:57:22,865 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-06-28 18:57:22,923 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-06-28 18:57:22,923 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:22,924 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:22,924 DEBUG quick_setup running python command "refabs" 2010-06-28 18:57:22,924 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-06-28 18:57:22,925 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-06-28 18:57:22,970 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-06-28 18:57:22,970 DEBUG quick_setup nav/smoothr.tmp exists 2010-06-28 18:57:22,970 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:22,971 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:22,971 DEBUG quick_setup running python command "smoothr" 2010-06-28 18:57:22,971 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-06-28 18:57:22,971 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-06-28 18:57:23,186 DEBUG quick_adcp running refsm 2010-06-28 18:57:23,187 DEBUG quick_npy Starting: refsm 2010-06-28 18:57:23,324 INFO nav dtmin = -0.50 dtmax = 0.50 2010-06-28 18:57:23,589 DEBUG quick_npy Ending: refsm 2010-06-28 18:57:23,589 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-06-28 18:57:23,590 DEBUG quick_setup nav/putnav.tmp exists 2010-06-28 18:57:23,590 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:23,590 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:23,590 DEBUG quick_setup running python command "putnav" 2010-06-28 18:57:23,591 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-06-28 18:57:23,591 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-06-28 18:57:23,654 DEBUG quick_mpl Starting plot: nav 2010-06-28 18:57:24,578 DEBUG quick_mpl Ending plot: nav 2010-06-28 18:57:24,579 DEBUG quick_mpl Starting plot: refl 2010-06-28 18:57:24,722 DEBUG quick_mplplots found 6.259447 days of data 2010-06-28 18:57:24,723 DEBUG quick_mplplots start day is 172.000000 2010-06-28 18:57:24,723 DEBUG quick_mplplots figures with 2.000000 days per page 2010-06-28 18:57:24,723 DEBUG quick_mplplots printing 4 pages 2010-06-28 18:57:24,723 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-06-28 18:57:24,724 INFO quick_mplplots startdd is 172.0 2010-06-28 18:57:24,724 INFO quick_mplplots dt is 2.0 2010-06-28 18:57:28,828 DEBUG quick_mpl Ending plot: refl 2010-06-28 18:57:28,829 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-06-28 18:57:28,830 DEBUG quick_setup edit/lst_temp.tmp exists 2010-06-28 18:57:28,830 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:28,830 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/edit 2010-06-28 18:57:28,831 DEBUG quick_setup running python command "lst_temp" 2010-06-28 18:57:28,831 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc.tem step_size= 1 year_base= 2010 time_ranges: all 2010-06-28 18:57:28,831 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-06-28 18:57:28,867 DEBUG quick_mpl Starting plot: temp 2010-06-28 18:57:28,916 DEBUG quick_mplplots plotting 1798 points 2010-06-28 18:57:29,523 DEBUG quick_mpl Ending plot: temp 2010-06-28 18:57:29,523 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-06-28 18:57:29,524 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-06-28 18:57:29,524 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,524 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/cal/botmtrk 2010-06-28 18:57:29,525 DEBUG quick_setup running python command "lst_btrk" 2010-06-28 18:57:29,525 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: a_oc.btm step_size= 1 year_base= 2010 time_ranges: 2010/06/22 12:32:09 to 2010/06/28 18:55:47 /* whole time range */ 2010-06-28 18:57:29,525 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-06-28 18:57:29,541 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-06-28 18:57:29,541 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,541 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/cal/botmtrk 2010-06-28 18:57:29,542 DEBUG quick_setup running python command "refabsbt" 2010-06-28 18:57:29,542 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.btm fix_file: ../../nav/a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-06-28 18:57:29,542 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-06-28 18:57:29,552 DEBUG quick_mpl Starting plot: btcal 2010-06-28 18:57:29,553 DEBUG quick_mplplots No data in a_oc.btm 2010-06-28 18:57:29,554 DEBUG quick_mplplots Returning from Btplot with no output 2010-06-28 18:57:29,554 DEBUG quick_mpl Ending plot: btcal 2010-06-28 18:57:29,554 DEBUG quick_setup nav/as_nav.tmp exists 2010-06-28 18:57:29,555 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,555 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/nav 2010-06-28 18:57:29,555 DEBUG quick_setup running python command "as_nav" 2010-06-28 18:57:29,555 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/06/22 12:32:09 to 2010/06/28 18:55:47 /* the whole time range */ 2010-06-28 18:57:29,556 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-06-28 18:57:29,613 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-06-28 18:57:29,613 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,613 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/cal/watertrk 2010-06-28 18:57:29,614 DEBUG quick_setup running python command "timslip" 2010-06-28 18:57:29,614 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_oc.gps reference_file: ../../nav/a_oc.nav output_file: a_oc_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-06-28 18:57:29,614 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-06-28 18:57:29,634 DEBUG quick_mpl Starting plot: wtcal 2010-06-28 18:57:29,637 DEBUG quick_mplplots Found 15 calibration points 2010-06-28 18:57:29,639 DEBUG quick_mplplots Only 1 valid points found; quitting 2010-06-28 18:57:29,639 DEBUG quick_mpl Ending plot: wtcal 2010-06-28 18:57:29,639 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-06-28 18:57:29,639 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,640 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/vector 2010-06-28 18:57:29,640 DEBUG quick_setup running python command "timegrid" 2010-06-28 18:57:29,641 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-06-28 18:57:29,649 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,650 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/vector 2010-06-28 18:57:29,650 DEBUG quick_setup running python command "as_vect" 2010-06-28 18:57:29,651 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-06-28 18:57:29,718 DEBUG quick_asect done making vector matfiles 2010-06-28 18:57:29,719 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,719 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/contour 2010-06-28 18:57:29,719 DEBUG quick_setup running python command "timegrid" 2010-06-28 18:57:29,720 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-06-28 18:57:29,732 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,733 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/contour 2010-06-28 18:57:29,733 DEBUG quick_setup running python command "as_cont" 2010-06-28 18:57:29,734 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-06-28 18:57:29,834 DEBUG quick_setup starting in /home/data/oc464/proc/os75nb 2010-06-28 18:57:29,834 DEBUG quick_setup executing commands from /home/data/oc464/proc/os75nb/contour 2010-06-28 18:57:29,835 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_oc 2010-06-28 18:57:30,057 DEBUG quick_asect done running getmat with "allbins" 2010-06-28 18:57:30,124 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-06-28 18:57:30,125 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-06-28 18:57:30,125 DEBUG root matfile is contour/contour_uv.mat 2010-06-28 18:57:30,129 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-06-28 18:57:30,130 DEBUG root matfile is vector/vector_uv.mat 2010-06-28 18:57:30,131 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-06-28 18:57:30,131 DEBUG root matfile is contour/contour_xy.mat 2010-06-28 18:57:30,131 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-06-28 18:57:30,132 DEBUG root matfile is vector/vector_xy.mat 2010-06-28 18:57:30,132 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-06-28 18:57:30,133 DEBUG root about to copy file edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2010-06-28 18:57:30,133 INFO root copying edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2010-06-28 18:57:30,134 INFO root Ending quick_adcp.py 2010-06-28 18:57:30,209 DEBUG quick_setup killed matlab engine