2010-04-17 10:42:45,051 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase oc459_02 --cruisename oc459_02 --instclass os --instname os75 --dbname a_oc --datatype uhdas --datadir /home/data/oc459_02/raw/os75 --cfgpath /home/data/oc459_02/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech ## not using topo for editing ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --npycalc all --mplplots all 2010-04-17 10:42:45,051 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2010-04-17 10:42:45,055 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-04-17 10:42:45,055 DEBUG quick_adcp progdir = /home/currents/programs 2010-04-17 10:42:45,055 DEBUG quick_adcp binos = lnx 2010-04-17 10:42:45,056 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-04-17 10:42:45,056 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-04-17 10:42:45,057 DEBUG quick_setup numpy calculations to run: refsm 2010-04-17 10:42:45,057 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-04-17 10:42:45,057 DEBUG quick_setup processing data logged with uhdas: 2010-04-17 10:42:45,057 DEBUG quick_setup datatype is uhdas 2010-04-17 10:42:45,057 DEBUG quick_setup pingtype is nb 2010-04-17 10:42:45,058 DEBUG quick_setup instclass is os 2010-04-17 10:42:45,058 DEBUG quick_setup no post-processing heading correction will be used 2010-04-17 10:42:45,058 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-04-17 10:42:45,078 DEBUG quick_setup found (in edit/asetup.m): 2010-04-17 10:42:45,078 DEBUG quick_setup config.beamangle is 30 2010-04-17 10:42:45,078 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'oc459_02',... 'cfgpath' , '/home/data/oc459_02/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-04-17 10:42:45,079 DEBUG quick_setup ------- starting Matlab engine ------- 2010-04-17 10:42:45,079 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-04-17 10:42:45,084 DEBUG call_matlab starting to wait for initial prompt 2010-04-17 10:42:46,201 DEBUG call_matlab received initial prompt 2010-04-17 10:42:46,445 DEBUG quick_adcp cwd is /home/data/oc459_02/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-04-17 10:42:46,446 DEBUG quick_adcp original fix file is a_oc.gps 2010-04-17 10:42:46,446 DEBUG quick_adcp smoothed nav file is a_oc_refsm.asc 2010-04-17 10:42:46,446 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-04-17 10:42:46,476 DEBUG quick_subs found 132 files using wildcard expansion from "/home/data/oc459_02/raw/os75/*.raw" 2010-04-17 10:42:46,476 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/oc459_02/raw/os75/oc2010_095_47514.raw /home/data/oc459_02/raw/os75/oc2010_095_50400.raw /home/data/oc459_02/raw/os75/oc2010_095_57600.raw /home/data/oc459_02/raw/os75/oc2010_095_64800.raw /home/data/oc459_02/raw/os75/oc2010_095_72000.raw /home/data/oc459_02/raw/os75/oc2010_095_79200.raw /home/data/oc459_02/raw/os75/oc2010_096_00000.raw /home/data/oc459_02/raw/os75/oc2010_096_07200.raw /home/data/oc459_02/raw/os75/oc2010_096_14400.raw /home/data/oc459_02/raw/os75/oc2010_096_21600.raw /home/data/oc459_02/raw/os75/oc2010_096_28800.raw /home/data/oc459_02/raw/os75/oc2010_096_36000.raw /home/data/oc459_02/raw/os75/oc2010_096_43200.raw /home/data/oc459_02/raw/os75/oc2010_096_50400.raw /home/data/oc459_02/raw/os75/oc2010_096_57600.raw /home/data/oc459_02/raw/os75/oc2010_096_64800.raw /home/data/oc459_02/raw/os75/oc2010_096_72000.raw /home/data/oc459_02/raw/os75/oc2010_096_79200.raw /home/data/oc459_02/raw/os75/oc2010_097_00000.raw /home/data/oc459_02/raw/os75/oc2010_097_07200.raw /home/data/oc459_02/raw/os75/oc2010_097_14400.raw /home/data/oc459_02/raw/os75/oc2010_097_21600.raw /home/data/oc459_02/raw/os75/oc2010_097_28800.raw /home/data/oc459_02/raw/os75/oc2010_097_36000.raw /home/data/oc459_02/raw/os75/oc2010_097_43200.raw /home/data/oc459_02/raw/os75/oc2010_097_50400.raw /home/data/oc459_02/raw/os75/oc2010_097_57600.raw /home/data/oc459_02/raw/os75/oc2010_097_64800.raw /home/data/oc459_02/raw/os75/oc2010_097_72000.raw /home/data/oc459_02/raw/os75/oc2010_097_79200.raw /home/data/oc459_02/raw/os75/oc2010_098_00000.raw /home/data/oc459_02/raw/os75/oc2010_098_07200.raw /home/data/oc459_02/raw/os75/oc2010_098_14400.raw /home/data/oc459_02/raw/os75/oc2010_098_21600.raw /home/data/oc459_02/raw/os75/oc2010_098_28800.raw /home/data/oc459_02/raw/os75/oc2010_098_36000.raw /home/data/oc459_02/raw/os75/oc2010_098_43200.raw /home/data/oc459_02/raw/os75/oc2010_098_50400.raw /home/data/oc459_02/raw/os75/oc2010_098_57600.raw /home/data/oc459_02/raw/os75/oc2010_098_64800.raw /home/data/oc459_02/raw/os75/oc2010_098_72000.raw /home/data/oc459_02/raw/os75/oc2010_098_79200.raw /home/data/oc459_02/raw/os75/oc2010_099_00000.raw /home/data/oc459_02/raw/os75/oc2010_099_07200.raw /home/data/oc459_02/raw/os75/oc2010_099_14400.raw /home/data/oc459_02/raw/os75/oc2010_099_21600.raw /home/data/oc459_02/raw/os75/oc2010_099_28800.raw /home/data/oc459_02/raw/os75/oc2010_099_36000.raw /home/data/oc459_02/raw/os75/oc2010_099_43200.raw /home/data/oc459_02/raw/os75/oc2010_099_50400.raw /home/data/oc459_02/raw/os75/oc2010_099_57600.raw /home/data/oc459_02/raw/os75/oc2010_099_64800.raw /home/data/oc459_02/raw/os75/oc2010_099_72000.raw /home/data/oc459_02/raw/os75/oc2010_099_79200.raw /home/data/oc459_02/raw/os75/oc2010_100_00000.raw /home/data/oc459_02/raw/os75/oc2010_100_07200.raw /home/data/oc459_02/raw/os75/oc2010_100_14400.raw /home/data/oc459_02/raw/os75/oc2010_100_21600.raw /home/data/oc459_02/raw/os75/oc2010_100_28800.raw /home/data/oc459_02/raw/os75/oc2010_100_36000.raw /home/data/oc459_02/raw/os75/oc2010_100_43200.raw /home/data/oc459_02/raw/os75/oc2010_100_50400.raw /home/data/oc459_02/raw/os75/oc2010_100_57600.raw /home/data/oc459_02/raw/os75/oc2010_100_64800.raw /home/data/oc459_02/raw/os75/oc2010_100_72000.raw /home/data/oc459_02/raw/os75/oc2010_100_79200.raw /home/data/oc459_02/raw/os75/oc2010_101_00000.raw /home/data/oc459_02/raw/os75/oc2010_101_07200.raw /home/data/oc459_02/raw/os75/oc2010_101_14400.raw /home/data/oc459_02/raw/os75/oc2010_101_21600.raw /home/data/oc459_02/raw/os75/oc2010_101_28800.raw /home/data/oc459_02/raw/os75/oc2010_101_36000.raw /home/data/oc459_02/raw/os75/oc2010_101_43200.raw /home/data/oc459_02/raw/os75/oc2010_101_50400.raw /home/data/oc459_02/raw/os75/oc2010_101_57600.raw /home/data/oc459_02/raw/os75/oc2010_101_64800.raw /home/data/oc459_02/raw/os75/oc2010_101_72000.raw /home/data/oc459_02/raw/os75/oc2010_101_79200.raw /home/data/oc459_02/raw/os75/oc2010_102_00000.raw /home/data/oc459_02/raw/os75/oc2010_102_07200.raw /home/data/oc459_02/raw/os75/oc2010_102_14400.raw /home/data/oc459_02/raw/os75/oc2010_102_21600.raw /home/data/oc459_02/raw/os75/oc2010_102_28800.raw /home/data/oc459_02/raw/os75/oc2010_102_36000.raw /home/data/oc459_02/raw/os75/oc2010_102_43200.raw /home/data/oc459_02/raw/os75/oc2010_102_50400.raw /home/data/oc459_02/raw/os75/oc2010_102_57600.raw /home/data/oc459_02/raw/os75/oc2010_102_64800.raw /home/data/oc459_02/raw/os75/oc2010_102_72000.raw /home/data/oc459_02/raw/os75/oc2010_102_79200.raw /home/data/oc459_02/raw/os75/oc2010_103_00000.raw /home/data/oc459_02/raw/os75/oc2010_103_07200.raw /home/data/oc459_02/raw/os75/oc2010_103_14400.raw /home/data/oc459_02/raw/os75/oc2010_103_21600.raw /home/data/oc459_02/raw/os75/oc2010_103_28800.raw /home/data/oc459_02/raw/os75/oc2010_103_36000.raw /home/data/oc459_02/raw/os75/oc2010_103_43200.raw /home/data/oc459_02/raw/os75/oc2010_103_50400.raw /home/data/oc459_02/raw/os75/oc2010_103_57600.raw /home/data/oc459_02/raw/os75/oc2010_103_64800.raw /home/data/oc459_02/raw/os75/oc2010_103_72000.raw /home/data/oc459_02/raw/os75/oc2010_103_79200.raw /home/data/oc459_02/raw/os75/oc2010_104_00000.raw /home/data/oc459_02/raw/os75/oc2010_104_07200.raw /home/data/oc459_02/raw/os75/oc2010_104_14400.raw /home/data/oc459_02/raw/os75/oc2010_104_21600.raw /home/data/oc459_02/raw/os75/oc2010_104_28800.raw /home/data/oc459_02/raw/os75/oc2010_104_36000.raw /home/data/oc459_02/raw/os75/oc2010_104_43200.raw /home/data/oc459_02/raw/os75/oc2010_104_50400.raw /home/data/oc459_02/raw/os75/oc2010_104_57600.raw /home/data/oc459_02/raw/os75/oc2010_104_64800.raw /home/data/oc459_02/raw/os75/oc2010_104_72000.raw /home/data/oc459_02/raw/os75/oc2010_104_79200.raw /home/data/oc459_02/raw/os75/oc2010_105_00000.raw /home/data/oc459_02/raw/os75/oc2010_105_07200.raw /home/data/oc459_02/raw/os75/oc2010_105_14400.raw /home/data/oc459_02/raw/os75/oc2010_105_21600.raw /home/data/oc459_02/raw/os75/oc2010_105_28800.raw /home/data/oc459_02/raw/os75/oc2010_105_36000.raw /home/data/oc459_02/raw/os75/oc2010_105_43200.raw /home/data/oc459_02/raw/os75/oc2010_105_50400.raw /home/data/oc459_02/raw/os75/oc2010_105_57600.raw /home/data/oc459_02/raw/os75/oc2010_105_64800.raw /home/data/oc459_02/raw/os75/oc2010_105_72000.raw /home/data/oc459_02/raw/os75/oc2010_105_79200.raw /home/data/oc459_02/raw/os75/oc2010_106_00000.raw /home/data/oc459_02/raw/os75/oc2010_106_07200.raw /home/data/oc459_02/raw/os75/oc2010_106_14400.raw /home/data/oc459_02/raw/os75/oc2010_106_21600.raw /home/data/oc459_02/raw/os75/oc2010_106_28800.raw /home/data/oc459_02/raw/os75/oc2010_106_36000.raw 2010-04-17 10:42:46,477 DEBUG quick_adcp LASTFILES invoked. using only 132 files from end of filelist 2010-04-17 10:42:46,477 DEBUG quick_adcp using delblks = 1 2010-04-17 10:42:46,477 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/oc459_02/raw/os75/oc2010_095_47514.raw /home/data/oc459_02/raw/os75/oc2010_095_50400.raw /home/data/oc459_02/raw/os75/oc2010_095_57600.raw /home/data/oc459_02/raw/os75/oc2010_095_64800.raw /home/data/oc459_02/raw/os75/oc2010_095_72000.raw /home/data/oc459_02/raw/os75/oc2010_095_79200.raw /home/data/oc459_02/raw/os75/oc2010_096_00000.raw /home/data/oc459_02/raw/os75/oc2010_096_07200.raw /home/data/oc459_02/raw/os75/oc2010_096_14400.raw /home/data/oc459_02/raw/os75/oc2010_096_21600.raw /home/data/oc459_02/raw/os75/oc2010_096_28800.raw /home/data/oc459_02/raw/os75/oc2010_096_36000.raw /home/data/oc459_02/raw/os75/oc2010_096_43200.raw /home/data/oc459_02/raw/os75/oc2010_096_50400.raw /home/data/oc459_02/raw/os75/oc2010_096_57600.raw /home/data/oc459_02/raw/os75/oc2010_096_64800.raw /home/data/oc459_02/raw/os75/oc2010_096_72000.raw /home/data/oc459_02/raw/os75/oc2010_096_79200.raw /home/data/oc459_02/raw/os75/oc2010_097_00000.raw /home/data/oc459_02/raw/os75/oc2010_097_07200.raw /home/data/oc459_02/raw/os75/oc2010_097_14400.raw /home/data/oc459_02/raw/os75/oc2010_097_21600.raw /home/data/oc459_02/raw/os75/oc2010_097_28800.raw /home/data/oc459_02/raw/os75/oc2010_097_36000.raw /home/data/oc459_02/raw/os75/oc2010_097_43200.raw /home/data/oc459_02/raw/os75/oc2010_097_50400.raw /home/data/oc459_02/raw/os75/oc2010_097_57600.raw /home/data/oc459_02/raw/os75/oc2010_097_64800.raw /home/data/oc459_02/raw/os75/oc2010_097_72000.raw /home/data/oc459_02/raw/os75/oc2010_097_79200.raw /home/data/oc459_02/raw/os75/oc2010_098_00000.raw /home/data/oc459_02/raw/os75/oc2010_098_07200.raw /home/data/oc459_02/raw/os75/oc2010_098_14400.raw /home/data/oc459_02/raw/os75/oc2010_098_21600.raw /home/data/oc459_02/raw/os75/oc2010_098_28800.raw /home/data/oc459_02/raw/os75/oc2010_098_36000.raw /home/data/oc459_02/raw/os75/oc2010_098_43200.raw /home/data/oc459_02/raw/os75/oc2010_098_50400.raw /home/data/oc459_02/raw/os75/oc2010_098_57600.raw /home/data/oc459_02/raw/os75/oc2010_098_64800.raw /home/data/oc459_02/raw/os75/oc2010_098_72000.raw /home/data/oc459_02/raw/os75/oc2010_098_79200.raw /home/data/oc459_02/raw/os75/oc2010_099_00000.raw /home/data/oc459_02/raw/os75/oc2010_099_07200.raw /home/data/oc459_02/raw/os75/oc2010_099_14400.raw /home/data/oc459_02/raw/os75/oc2010_099_21600.raw /home/data/oc459_02/raw/os75/oc2010_099_28800.raw /home/data/oc459_02/raw/os75/oc2010_099_36000.raw /home/data/oc459_02/raw/os75/oc2010_099_43200.raw /home/data/oc459_02/raw/os75/oc2010_099_50400.raw /home/data/oc459_02/raw/os75/oc2010_099_57600.raw /home/data/oc459_02/raw/os75/oc2010_099_64800.raw /home/data/oc459_02/raw/os75/oc2010_099_72000.raw /home/data/oc459_02/raw/os75/oc2010_099_79200.raw /home/data/oc459_02/raw/os75/oc2010_100_00000.raw /home/data/oc459_02/raw/os75/oc2010_100_07200.raw /home/data/oc459_02/raw/os75/oc2010_100_14400.raw /home/data/oc459_02/raw/os75/oc2010_100_21600.raw /home/data/oc459_02/raw/os75/oc2010_100_28800.raw /home/data/oc459_02/raw/os75/oc2010_100_36000.raw /home/data/oc459_02/raw/os75/oc2010_100_43200.raw /home/data/oc459_02/raw/os75/oc2010_100_50400.raw /home/data/oc459_02/raw/os75/oc2010_100_57600.raw /home/data/oc459_02/raw/os75/oc2010_100_64800.raw /home/data/oc459_02/raw/os75/oc2010_100_72000.raw /home/data/oc459_02/raw/os75/oc2010_100_79200.raw /home/data/oc459_02/raw/os75/oc2010_101_00000.raw /home/data/oc459_02/raw/os75/oc2010_101_07200.raw /home/data/oc459_02/raw/os75/oc2010_101_14400.raw /home/data/oc459_02/raw/os75/oc2010_101_21600.raw /home/data/oc459_02/raw/os75/oc2010_101_28800.raw /home/data/oc459_02/raw/os75/oc2010_101_36000.raw /home/data/oc459_02/raw/os75/oc2010_101_43200.raw /home/data/oc459_02/raw/os75/oc2010_101_50400.raw /home/data/oc459_02/raw/os75/oc2010_101_57600.raw /home/data/oc459_02/raw/os75/oc2010_101_64800.raw /home/data/oc459_02/raw/os75/oc2010_101_72000.raw /home/data/oc459_02/raw/os75/oc2010_101_79200.raw /home/data/oc459_02/raw/os75/oc2010_102_00000.raw /home/data/oc459_02/raw/os75/oc2010_102_07200.raw /home/data/oc459_02/raw/os75/oc2010_102_14400.raw /home/data/oc459_02/raw/os75/oc2010_102_21600.raw /home/data/oc459_02/raw/os75/oc2010_102_28800.raw /home/data/oc459_02/raw/os75/oc2010_102_36000.raw /home/data/oc459_02/raw/os75/oc2010_102_43200.raw /home/data/oc459_02/raw/os75/oc2010_102_50400.raw /home/data/oc459_02/raw/os75/oc2010_102_57600.raw /home/data/oc459_02/raw/os75/oc2010_102_64800.raw /home/data/oc459_02/raw/os75/oc2010_102_72000.raw /home/data/oc459_02/raw/os75/oc2010_102_79200.raw /home/data/oc459_02/raw/os75/oc2010_103_00000.raw /home/data/oc459_02/raw/os75/oc2010_103_07200.raw /home/data/oc459_02/raw/os75/oc2010_103_14400.raw /home/data/oc459_02/raw/os75/oc2010_103_21600.raw /home/data/oc459_02/raw/os75/oc2010_103_28800.raw /home/data/oc459_02/raw/os75/oc2010_103_36000.raw /home/data/oc459_02/raw/os75/oc2010_103_43200.raw /home/data/oc459_02/raw/os75/oc2010_103_50400.raw /home/data/oc459_02/raw/os75/oc2010_103_57600.raw /home/data/oc459_02/raw/os75/oc2010_103_64800.raw /home/data/oc459_02/raw/os75/oc2010_103_72000.raw /home/data/oc459_02/raw/os75/oc2010_103_79200.raw /home/data/oc459_02/raw/os75/oc2010_104_00000.raw /home/data/oc459_02/raw/os75/oc2010_104_07200.raw /home/data/oc459_02/raw/os75/oc2010_104_14400.raw /home/data/oc459_02/raw/os75/oc2010_104_21600.raw /home/data/oc459_02/raw/os75/oc2010_104_28800.raw /home/data/oc459_02/raw/os75/oc2010_104_36000.raw /home/data/oc459_02/raw/os75/oc2010_104_43200.raw /home/data/oc459_02/raw/os75/oc2010_104_50400.raw /home/data/oc459_02/raw/os75/oc2010_104_57600.raw /home/data/oc459_02/raw/os75/oc2010_104_64800.raw /home/data/oc459_02/raw/os75/oc2010_104_72000.raw /home/data/oc459_02/raw/os75/oc2010_104_79200.raw /home/data/oc459_02/raw/os75/oc2010_105_00000.raw /home/data/oc459_02/raw/os75/oc2010_105_07200.raw /home/data/oc459_02/raw/os75/oc2010_105_14400.raw /home/data/oc459_02/raw/os75/oc2010_105_21600.raw /home/data/oc459_02/raw/os75/oc2010_105_28800.raw /home/data/oc459_02/raw/os75/oc2010_105_36000.raw /home/data/oc459_02/raw/os75/oc2010_105_43200.raw /home/data/oc459_02/raw/os75/oc2010_105_50400.raw /home/data/oc459_02/raw/os75/oc2010_105_57600.raw /home/data/oc459_02/raw/os75/oc2010_105_64800.raw /home/data/oc459_02/raw/os75/oc2010_105_72000.raw /home/data/oc459_02/raw/os75/oc2010_105_79200.raw /home/data/oc459_02/raw/os75/oc2010_106_00000.raw /home/data/oc459_02/raw/os75/oc2010_106_07200.raw /home/data/oc459_02/raw/os75/oc2010_106_14400.raw /home/data/oc459_02/raw/os75/oc2010_106_21600.raw /home/data/oc459_02/raw/os75/oc2010_106_28800.raw /home/data/oc459_02/raw/os75/oc2010_106_36000.raw 2010-04-17 10:42:46,480 DEBUG quick_adcp Sat Apr 17 10:42:46 2010 running quick_adcp.py as follows: --cntfile /home/data/oc459_02/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_oc cbasename contour dbname a_oc dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 29 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_oc allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase oc459_02 cfgpath /home/data/oc459_02/proc/os75nb/config cntfile /home/data/oc459_02/proc/os75nb/os75nb_qpy.cnt commands None cruisename oc459_02 data_def vmadcp.def datadir /home/data/oc459_02/raw/os75 datafile_glob *.raw datatype uhdas dbname a_oc dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/oc459_02/raw/os75/oc2010_095_47514.raw', '/home/data/oc459_02/raw/os75/oc2010_095_50400.raw', '/home/data/oc459_02/raw/os75/oc2010_095_57600.raw', '/home/data/oc459_02/raw/os75/oc2010_095_64800.raw', '/home/data/oc459_02/raw/os75/oc2010_095_72000.raw', '/home/data/oc459_02/raw/os75/oc2010_095_79200.raw', '/home/data/oc459_02/raw/os75/oc2010_096_00000.raw', '/home/data/oc459_02/raw/os75/oc2010_096_07200.raw', '/home/data/oc459_02/raw/os75/oc2010_096_14400.raw', '/home/data/oc459_02/raw/os75/oc2010_096_21600.raw', '/home/data/oc459_02/raw/os75/oc2010_096_28800.raw', '/home/data/oc459_02/raw/os75/oc2010_096_36000.raw', '/home/data/oc459_02/raw/os75/oc2010_096_43200.raw', '/home/data/oc459_02/raw/os75/oc2010_096_50400.raw', '/home/data/oc459_02/raw/os75/oc2010_096_57600.raw', '/home/data/oc459_02/raw/os75/oc2010_096_64800.raw', 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'/home/data/oc459_02/raw/os75/oc2010_105_72000.raw', '/home/data/oc459_02/raw/os75/oc2010_105_79200.raw', '/home/data/oc459_02/raw/os75/oc2010_106_00000.raw', '/home/data/oc459_02/raw/os75/oc2010_106_07200.raw', '/home/data/oc459_02/raw/os75/oc2010_106_14400.raw', '/home/data/oc459_02/raw/os75/oc2010_106_21600.raw', '/home/data/oc459_02/raw/os75/oc2010_106_28800.raw', '/home/data/oc459_02/raw/os75/oc2010_106_36000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 29 fixfile a_oc.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'oc459_02',... 'cfgpath' , '/home/data/oc459_02/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 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'/home/data/oc459_02/raw/os75/oc2010_105_00000.raw', '/home/data/oc459_02/raw/os75/oc2010_105_07200.raw', '/home/data/oc459_02/raw/os75/oc2010_105_14400.raw', '/home/data/oc459_02/raw/os75/oc2010_105_21600.raw', '/home/data/oc459_02/raw/os75/oc2010_105_28800.raw', '/home/data/oc459_02/raw/os75/oc2010_105_36000.raw', '/home/data/oc459_02/raw/os75/oc2010_105_43200.raw', '/home/data/oc459_02/raw/os75/oc2010_105_50400.raw', '/home/data/oc459_02/raw/os75/oc2010_105_57600.raw', '/home/data/oc459_02/raw/os75/oc2010_105_64800.raw', '/home/data/oc459_02/raw/os75/oc2010_105_72000.raw', '/home/data/oc459_02/raw/os75/oc2010_105_79200.raw', '/home/data/oc459_02/raw/os75/oc2010_106_00000.raw', '/home/data/oc459_02/raw/os75/oc2010_106_07200.raw', '/home/data/oc459_02/raw/os75/oc2010_106_14400.raw', '/home/data/oc459_02/raw/os75/oc2010_106_21600.raw', '/home/data/oc459_02/raw/os75/oc2010_106_28800.raw', '/home/data/oc459_02/raw/os75/oc2010_106_36000.raw'] setup_info False skip_avg True smfile a_oc_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit 0 vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-04-17 10:42:46,480 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-04-17 10:42:46,480 DEBUG quick_run scanning files for time ranges... 2010-04-17 10:42:46,481 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb/scan 2010-04-17 10:42:46,481 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/scan 2010-04-17 10:42:46,481 DEBUG quick_setup running python command "scanraw" 2010-04-17 10:42:46,481 DEBUG call_matlab --> clear all 2010-04-17 10:42:46,487 DEBUG call_matlab <-- >> 2010-04-17 10:42:46,487 DEBUG call_matlab --> close all 2010-04-17 10:42:46,555 DEBUG call_matlab <-- >> 2010-04-17 10:42:46,555 DEBUG call_matlab --> cd /home/data/oc459_02/proc/os75nb/scan 2010-04-17 10:42:46,562 DEBUG call_matlab <-- >> 2010-04-17 10:42:46,563 DEBUG call_matlab --> scan_tmp 2010-04-17 10:42:47,539 DEBUG call_matlab <-- getting config files from "/home/data/oc459_02/proc/os75nb/config" running "oc459_02_cfg.m" running "oc459_02_proc.m" writing scan info to a_oc.scn >> 2010-04-17 10:42:47,540 DEBUG quick_run writing time range from a_oc.scn to a_oc.tr 2010-04-17 10:42:47,540 DEBUG quick_run getting scan time range 2010-04-17 10:42:47,540 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,540 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/scan 2010-04-17 10:42:47,540 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,541 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,542 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,543 DEBUG quick_subs start_end_time 2010/04/06 13:12:08 to 2010/04/17 10:40:08 2010-04-17 10:42:47,546 DEBUG quick_subs dd0: 95.550093 dd1: 106.444537 2010-04-17 10:42:47,546 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,547 DEBUG quick_adcp looking for database with adcpdb/a_oc*.blk 2010-04-17 10:42:47,548 DEBUG quick_adcp database found: listing blocks 2010-04-17 10:42:47,548 DEBUG quick_subs removing a_ocdir.blk 2010-04-17 10:42:47,549 DEBUG quick_subs about to run mkblkdir 2010-04-17 10:42:47,549 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-04-17 10:42:47,549 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-04-17 10:42:47,564 DEBUG quick_subs database passes. 2010-04-17 10:42:47,565 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-04-17 10:42:47,565 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,565 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,565 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,566 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,566 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,567 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 10:09:37 2010-04-17 10:42:47,567 DEBUG quick_subs dd0: 95.553657 dd1: 106.423345 2010-04-17 10:42:47,567 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-04-17 10:42:47,568 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,568 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,568 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,568 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,569 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,570 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 10:09:37 2010-04-17 10:42:47,570 DEBUG quick_subs dd0: 95.553657 dd1: 106.423345 2010-04-17 10:42:47,570 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-04-17 10:42:47,570 DEBUG quick_adcp origdb_time_range is 2010/04/06 13:17:16 to 2010/04/17 10:09:37 2010-04-17 10:42:47,571 DEBUG quick_adcp (95.553657 to 106.423345) 2010-04-17 10:42:47,571 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-04-17 10:42:47,572 DEBUG quick_subs getting current (remaining after deletion) database times 2010-04-17 10:42:47,572 DEBUG quick_subs ['adcpdb/a_oc017.blk', 'adcpdb/a_oc014.blk', 'adcpdb/a_oc015.blk', 'adcpdb/a_oc008.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc019.blk', 'adcpdb/a_oc016.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_oc022.blk', 'adcpdb/a_oc018.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc004.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_ocdir.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc021.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc012.blk', 'adcpdb/a_oc013.blk', 'adcpdb/a_oc020.blk', 'adcpdb/a_oc003.blk'] 2010-04-17 10:42:47,572 DEBUG quick_subs length is 23 2010-04-17 10:42:47,572 DEBUG quick_subs removing a_ocdir.blk 2010-04-17 10:42:47,573 DEBUG quick_subs about to run mkblkdir 2010-04-17 10:42:47,573 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-04-17 10:42:47,574 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-04-17 10:42:47,587 DEBUG quick_subs database passes. 2010-04-17 10:42:47,588 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-04-17 10:42:47,588 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,588 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,589 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,589 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,590 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,590 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 10:09:37 2010-04-17 10:42:47,590 DEBUG quick_subs dd0: 95.553657 dd1: 106.423345 2010-04-17 10:42:47,591 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,591 DEBUG quick_subs reading time range 2010-04-17 10:42:47,591 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 10:09:37 2010-04-17 10:42:47,592 DEBUG quick_subs dd0: 95.553657 dd1: 106.423345 2010-04-17 10:42:47,592 INFO quick_subs Sat Apr 17 10:42:47 2010 2010-04-17 10:42:47,592 INFO quick_subs checking database time range by listblk 2010-04-17 10:42:47,593 DEBUG quick_subs removing a_ocdir.blk 2010-04-17 10:42:47,593 DEBUG quick_subs about to run mkblkdir 2010-04-17 10:42:47,593 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-04-17 10:42:47,594 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-04-17 10:42:47,609 DEBUG quick_subs database passes. 2010-04-17 10:42:47,609 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-04-17 10:42:47,610 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,610 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,610 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,610 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,611 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,612 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 10:09:37 2010-04-17 10:42:47,612 DEBUG quick_subs dd0: 95.553657 dd1: 106.423345 2010-04-17 10:42:47,614 INFO quick_subs found line /* 0 n= 146 a_oc001.blk */ 2010/04/06 13:17:16 to 2010/04/07 01:37:24 2010-04-17 10:42:47,614 INFO quick_subs found line /* 1 n= 146 a_oc002.blk */ 2010/04/07 01:42:27 to 2010/04/07 13:57:06 2010-04-17 10:42:47,615 INFO quick_subs found line /* 2 n= 146 a_oc003.blk */ 2010/04/07 14:02:10 to 2010/04/08 02:21:33 2010-04-17 10:42:47,615 INFO quick_subs found line /* 3 n= 146 a_oc004.blk */ 2010/04/08 02:26:42 to 2010/04/08 14:40:38 2010-04-17 10:42:47,615 INFO quick_subs found line /* 4 n= 146 a_oc005.blk */ 2010/04/08 14:45:42 to 2010/04/09 03:05:05 2010-04-17 10:42:47,615 INFO quick_subs found line /* 5 n= 146 a_oc006.blk */ 2010/04/09 03:10:09 to 2010/04/09 15:24:13 2010-04-17 10:42:47,616 INFO quick_subs found line /* 6 n= 146 a_oc007.blk */ 2010/04/09 15:29:17 to 2010/04/10 03:44:26 2010-04-17 10:42:47,616 INFO quick_subs found line /* 7 n= 146 a_oc008.blk */ 2010/04/10 03:49:30 to 2010/04/10 16:14:00 2010-04-17 10:42:47,616 INFO quick_subs found line /* 8 n= 146 a_oc009.blk */ 2010/04/10 16:19:04 to 2010/04/11 04:33:13 2010-04-17 10:42:47,616 INFO quick_subs found line /* 9 n= 146 a_oc010.blk */ 2010/04/11 04:38:14 to 2010/04/11 16:52:11 2010-04-17 10:42:47,617 INFO quick_subs found line /* 10 n= 146 a_oc011.blk */ 2010/04/11 16:57:16 to 2010/04/12 05:11:22 2010-04-17 10:42:47,617 INFO quick_subs found line /* 11 n= 146 a_oc012.blk */ 2010/04/12 05:16:25 to 2010/04/12 17:36:10 2010-04-17 10:42:47,617 INFO quick_subs found line /* 12 n= 146 a_oc013.blk */ 2010/04/12 17:41:11 to 2010/04/13 05:55:31 2010-04-17 10:42:47,617 INFO quick_subs found line /* 13 n= 146 a_oc014.blk */ 2010/04/13 06:00:41 to 2010/04/13 18:20:51 2010-04-17 10:42:47,618 INFO quick_subs found line /* 14 n= 146 a_oc015.blk */ 2010/04/13 18:25:49 to 2010/04/14 06:40:45 2010-04-17 10:42:47,618 INFO quick_subs found line /* 15 n= 146 a_oc016.blk */ 2010/04/14 06:45:50 to 2010/04/14 19:00:24 2010-04-17 10:42:47,618 INFO quick_subs found line /* 16 n= 146 a_oc017.blk */ 2010/04/14 19:05:32 to 2010/04/15 07:19:04 2010-04-17 10:42:47,618 INFO quick_subs found line /* 17 n= 146 a_oc018.blk */ 2010/04/15 07:24:08 to 2010/04/15 19:38:31 2010-04-17 10:42:47,619 INFO quick_subs found line /* 18 n= 146 a_oc019.blk */ 2010/04/15 19:43:34 to 2010/04/16 07:56:21 2010-04-17 10:42:47,619 INFO quick_subs found line /* 19 n= 146 a_oc020.blk */ 2010/04/16 08:01:23 to 2010/04/16 20:15:33 2010-04-17 10:42:47,619 INFO quick_subs found line /* 20 n= 146 a_oc021.blk */ 2010/04/16 20:20:35 to 2010/04/17 08:33:40 2010-04-17 10:42:47,619 INFO quick_subs found line /* 21 n= 19 a_oc022.blk */ 2010/04/17 08:38:43 to 2010/04/17 10:09:37 2010-04-17 10:42:47,620 INFO quick_subs scan data start at 95.5500926 2010-04-17 10:42:47,620 INFO quick_subs scan time range: 2010/04/06 13:12:08 to 2010/04/17 10:40:08 2010-04-17 10:42:47,620 INFO quick_subs codasdb ends at 106.4233449 (2010/04/17 10:09:37) 2010-04-17 10:42:47,620 DEBUG quick_subs ... changed dirs, in /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,621 DEBUG quick_subs deleting these files: ['a_oc022.blk'] 2010-04-17 10:42:47,622 DEBUG quick_subs getting current (remaining after deletion) database times 2010-04-17 10:42:47,622 DEBUG quick_subs ['adcpdb/a_oc017.blk', 'adcpdb/a_oc014.blk', 'adcpdb/a_oc015.blk', 'adcpdb/a_oc008.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc019.blk', 'adcpdb/a_oc016.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_oc018.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc004.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc021.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc012.blk', 'adcpdb/a_oc013.blk', 'adcpdb/a_oc020.blk', 'adcpdb/a_oc003.blk'] 2010-04-17 10:42:47,622 DEBUG quick_subs length is 21 2010-04-17 10:42:47,623 DEBUG quick_subs about to run mkblkdir 2010-04-17 10:42:47,623 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-04-17 10:42:47,623 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-04-17 10:42:47,637 DEBUG quick_subs database passes. 2010-04-17 10:42:47,638 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-04-17 10:42:47,638 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,638 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,638 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,639 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,639 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,640 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 08:33:40 2010-04-17 10:42:47,640 DEBUG quick_subs dd0: 95.553657 dd1: 106.356713 2010-04-17 10:42:47,641 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,641 DEBUG quick_subs reading time range 2010-04-17 10:42:47,641 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 08:33:40 2010-04-17 10:42:47,641 DEBUG quick_subs dd0: 95.553657 dd1: 106.356713 2010-04-17 10:42:47,642 DEBUG quick_subs codas database currently goes from 2010/04/06 13:17:16 to 2010/04/17 08:33:40 2010-04-17 10:42:47,642 DEBUG quick_subs (95.553657 to 106.356713) 2010-04-17 10:42:47,643 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016found existing adcpdb blocks: %s 017found existing adcpdb blocks: %s 018found existing adcpdb blocks: %s 019found existing adcpdb blocks: %s 020found existing adcpdb blocks: %s 021 2010-04-17 10:42:47,644 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 018 019 020 021 022 2010-04-17 10:42:47,645 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021'] 2010-04-17 10:42:47,645 DEBUG quick_subs checked: unloaded blkstrs: ['022'] 2010-04-17 10:42:47,645 DEBUG quick_subs first unloaded file is load/ens_blk022.cmd 2010-04-17 10:42:47,646 DEBUG quick_subs data goes from 2010/04/17 08:38:43 to 2010/04/17 10:40:08 2010-04-17 10:42:47,646 DEBUG quick_subs (106.360220 to 106.444537) 2010-04-17 10:42:47,646 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/oc459_02/raw/os75/oc2010_095_47514.raw /home/data/oc459_02/raw/os75/oc2010_095_50400.raw /home/data/oc459_02/raw/os75/oc2010_095_57600.raw /home/data/oc459_02/raw/os75/oc2010_095_64800.raw /home/data/oc459_02/raw/os75/oc2010_095_72000.raw /home/data/oc459_02/raw/os75/oc2010_095_79200.raw /home/data/oc459_02/raw/os75/oc2010_096_00000.raw /home/data/oc459_02/raw/os75/oc2010_096_07200.raw /home/data/oc459_02/raw/os75/oc2010_096_14400.raw /home/data/oc459_02/raw/os75/oc2010_096_21600.raw /home/data/oc459_02/raw/os75/oc2010_096_28800.raw /home/data/oc459_02/raw/os75/oc2010_096_36000.raw /home/data/oc459_02/raw/os75/oc2010_096_43200.raw /home/data/oc459_02/raw/os75/oc2010_096_50400.raw /home/data/oc459_02/raw/os75/oc2010_096_57600.raw /home/data/oc459_02/raw/os75/oc2010_096_64800.raw /home/data/oc459_02/raw/os75/oc2010_096_72000.raw /home/data/oc459_02/raw/os75/oc2010_096_79200.raw /home/data/oc459_02/raw/os75/oc2010_097_00000.raw /home/data/oc459_02/raw/os75/oc2010_097_07200.raw /home/data/oc459_02/raw/os75/oc2010_097_14400.raw /home/data/oc459_02/raw/os75/oc2010_097_21600.raw /home/data/oc459_02/raw/os75/oc2010_097_28800.raw /home/data/oc459_02/raw/os75/oc2010_097_36000.raw /home/data/oc459_02/raw/os75/oc2010_097_43200.raw /home/data/oc459_02/raw/os75/oc2010_097_50400.raw /home/data/oc459_02/raw/os75/oc2010_097_57600.raw /home/data/oc459_02/raw/os75/oc2010_097_64800.raw /home/data/oc459_02/raw/os75/oc2010_097_72000.raw /home/data/oc459_02/raw/os75/oc2010_097_79200.raw /home/data/oc459_02/raw/os75/oc2010_098_00000.raw /home/data/oc459_02/raw/os75/oc2010_098_07200.raw /home/data/oc459_02/raw/os75/oc2010_098_14400.raw /home/data/oc459_02/raw/os75/oc2010_098_21600.raw /home/data/oc459_02/raw/os75/oc2010_098_28800.raw /home/data/oc459_02/raw/os75/oc2010_098_36000.raw /home/data/oc459_02/raw/os75/oc2010_098_43200.raw /home/data/oc459_02/raw/os75/oc2010_098_50400.raw /home/data/oc459_02/raw/os75/oc2010_098_57600.raw /home/data/oc459_02/raw/os75/oc2010_098_64800.raw /home/data/oc459_02/raw/os75/oc2010_098_72000.raw /home/data/oc459_02/raw/os75/oc2010_098_79200.raw 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/home/data/oc459_02/raw/os75/oc2010_105_57600.raw /home/data/oc459_02/raw/os75/oc2010_105_64800.raw /home/data/oc459_02/raw/os75/oc2010_105_72000.raw /home/data/oc459_02/raw/os75/oc2010_105_79200.raw /home/data/oc459_02/raw/os75/oc2010_106_00000.raw /home/data/oc459_02/raw/os75/oc2010_106_07200.raw /home/data/oc459_02/raw/os75/oc2010_106_14400.raw /home/data/oc459_02/raw/os75/oc2010_106_21600.raw /home/data/oc459_02/raw/os75/oc2010_106_28800.raw /home/data/oc459_02/raw/os75/oc2010_106_36000.raw 2010-04-17 10:42:47,647 INFO quick_run Sat Apr 17 10:42:47 2010 2010-04-17 10:42:47,647 INFO quick_run about to load uhdas files 2010-04-17 10:42:47,647 INFO quick_run /home/data/oc459_02/raw/os75/oc2010_095_47514.raw /home/data/oc459_02/raw/os75/oc2010_095_50400.raw /home/data/oc459_02/raw/os75/oc2010_095_57600.raw /home/data/oc459_02/raw/os75/oc2010_095_64800.raw /home/data/oc459_02/raw/os75/oc2010_095_72000.raw /home/data/oc459_02/raw/os75/oc2010_095_79200.raw /home/data/oc459_02/raw/os75/oc2010_096_00000.raw /home/data/oc459_02/raw/os75/oc2010_096_07200.raw /home/data/oc459_02/raw/os75/oc2010_096_14400.raw /home/data/oc459_02/raw/os75/oc2010_096_21600.raw /home/data/oc459_02/raw/os75/oc2010_096_28800.raw /home/data/oc459_02/raw/os75/oc2010_096_36000.raw /home/data/oc459_02/raw/os75/oc2010_096_43200.raw /home/data/oc459_02/raw/os75/oc2010_096_50400.raw /home/data/oc459_02/raw/os75/oc2010_096_57600.raw /home/data/oc459_02/raw/os75/oc2010_096_64800.raw /home/data/oc459_02/raw/os75/oc2010_096_72000.raw /home/data/oc459_02/raw/os75/oc2010_096_79200.raw /home/data/oc459_02/raw/os75/oc2010_097_00000.raw /home/data/oc459_02/raw/os75/oc2010_097_07200.raw /home/data/oc459_02/raw/os75/oc2010_097_14400.raw /home/data/oc459_02/raw/os75/oc2010_097_21600.raw /home/data/oc459_02/raw/os75/oc2010_097_28800.raw /home/data/oc459_02/raw/os75/oc2010_097_36000.raw /home/data/oc459_02/raw/os75/oc2010_097_43200.raw /home/data/oc459_02/raw/os75/oc2010_097_50400.raw /home/data/oc459_02/raw/os75/oc2010_097_57600.raw /home/data/oc459_02/raw/os75/oc2010_097_64800.raw /home/data/oc459_02/raw/os75/oc2010_097_72000.raw /home/data/oc459_02/raw/os75/oc2010_097_79200.raw /home/data/oc459_02/raw/os75/oc2010_098_00000.raw /home/data/oc459_02/raw/os75/oc2010_098_07200.raw /home/data/oc459_02/raw/os75/oc2010_098_14400.raw /home/data/oc459_02/raw/os75/oc2010_098_21600.raw /home/data/oc459_02/raw/os75/oc2010_098_28800.raw /home/data/oc459_02/raw/os75/oc2010_098_36000.raw /home/data/oc459_02/raw/os75/oc2010_098_43200.raw /home/data/oc459_02/raw/os75/oc2010_098_50400.raw /home/data/oc459_02/raw/os75/oc2010_098_57600.raw /home/data/oc459_02/raw/os75/oc2010_098_64800.raw /home/data/oc459_02/raw/os75/oc2010_098_72000.raw /home/data/oc459_02/raw/os75/oc2010_098_79200.raw /home/data/oc459_02/raw/os75/oc2010_099_00000.raw /home/data/oc459_02/raw/os75/oc2010_099_07200.raw /home/data/oc459_02/raw/os75/oc2010_099_14400.raw /home/data/oc459_02/raw/os75/oc2010_099_21600.raw 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/home/data/oc459_02/raw/os75/oc2010_102_57600.raw /home/data/oc459_02/raw/os75/oc2010_102_64800.raw /home/data/oc459_02/raw/os75/oc2010_102_72000.raw /home/data/oc459_02/raw/os75/oc2010_102_79200.raw /home/data/oc459_02/raw/os75/oc2010_103_00000.raw /home/data/oc459_02/raw/os75/oc2010_103_07200.raw /home/data/oc459_02/raw/os75/oc2010_103_14400.raw /home/data/oc459_02/raw/os75/oc2010_103_21600.raw /home/data/oc459_02/raw/os75/oc2010_103_28800.raw /home/data/oc459_02/raw/os75/oc2010_103_36000.raw /home/data/oc459_02/raw/os75/oc2010_103_43200.raw /home/data/oc459_02/raw/os75/oc2010_103_50400.raw /home/data/oc459_02/raw/os75/oc2010_103_57600.raw /home/data/oc459_02/raw/os75/oc2010_103_64800.raw /home/data/oc459_02/raw/os75/oc2010_103_72000.raw /home/data/oc459_02/raw/os75/oc2010_103_79200.raw /home/data/oc459_02/raw/os75/oc2010_104_00000.raw /home/data/oc459_02/raw/os75/oc2010_104_07200.raw /home/data/oc459_02/raw/os75/oc2010_104_14400.raw /home/data/oc459_02/raw/os75/oc2010_104_21600.raw /home/data/oc459_02/raw/os75/oc2010_104_28800.raw /home/data/oc459_02/raw/os75/oc2010_104_36000.raw /home/data/oc459_02/raw/os75/oc2010_104_43200.raw /home/data/oc459_02/raw/os75/oc2010_104_50400.raw /home/data/oc459_02/raw/os75/oc2010_104_57600.raw /home/data/oc459_02/raw/os75/oc2010_104_64800.raw /home/data/oc459_02/raw/os75/oc2010_104_72000.raw /home/data/oc459_02/raw/os75/oc2010_104_79200.raw /home/data/oc459_02/raw/os75/oc2010_105_00000.raw /home/data/oc459_02/raw/os75/oc2010_105_07200.raw /home/data/oc459_02/raw/os75/oc2010_105_14400.raw /home/data/oc459_02/raw/os75/oc2010_105_21600.raw /home/data/oc459_02/raw/os75/oc2010_105_28800.raw /home/data/oc459_02/raw/os75/oc2010_105_36000.raw /home/data/oc459_02/raw/os75/oc2010_105_43200.raw /home/data/oc459_02/raw/os75/oc2010_105_50400.raw /home/data/oc459_02/raw/os75/oc2010_105_57600.raw /home/data/oc459_02/raw/os75/oc2010_105_64800.raw /home/data/oc459_02/raw/os75/oc2010_105_72000.raw /home/data/oc459_02/raw/os75/oc2010_105_79200.raw /home/data/oc459_02/raw/os75/oc2010_106_00000.raw /home/data/oc459_02/raw/os75/oc2010_106_07200.raw /home/data/oc459_02/raw/os75/oc2010_106_14400.raw /home/data/oc459_02/raw/os75/oc2010_106_21600.raw /home/data/oc459_02/raw/os75/oc2010_106_28800.raw /home/data/oc459_02/raw/os75/oc2010_106_36000.raw 2010-04-17 10:42:47,647 DEBUG quick_setup load/ldcodas.tmp exists 2010-04-17 10:42:47,647 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,648 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/load 2010-04-17 10:42:47,648 DEBUG quick_setup running python command "ldcodas" 2010-04-17 10:42:47,648 DEBUG quick_subs in /home/data/oc459_02/proc/os75nb/load 2010-04-17 10:42:47,649 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021'] 2010-04-17 10:42:47,650 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022'] 2010-04-17 10:42:47,650 DEBUG quick_subs starttime is 2010/04/17 08:38:43 2010-04-17 10:42:47,651 DEBUG quick_subs RESETTING thisload_time_range 2010-04-17 10:42:47,651 DEBUG quick_subs time range of data to be loaded: 2010/04/17 08:38:43 to 2010/04/17 10:40:08 2010-04-17 10:42:47,651 DEBUG quick_subs data startdd 106.360220 data enddd 106.444537 2010-04-17 10:42:47,651 DEBUG quick_subs about to load from these cmd files ['ens_blk022.cmd'] 2010-04-17 10:42:47,651 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_oc DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk022.cmd 2010-04-17 10:42:47,652 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-04-17 10:42:47,667 DEBUG quick_subs removing a_ocdir.blk 2010-04-17 10:42:47,668 DEBUG quick_subs about to run mkblkdir 2010-04-17 10:42:47,668 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-04-17 10:42:47,669 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-04-17 10:42:47,689 DEBUG quick_subs database passes. 2010-04-17 10:42:47,689 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-04-17 10:42:47,690 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,690 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,690 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,690 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,691 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,691 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 10:39:52 2010-04-17 10:42:47,692 DEBUG quick_subs dd0: 95.553657 dd1: 106.444352 2010-04-17 10:42:47,692 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2010-04-17 10:42:47,692 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,693 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,693 DEBUG quick_setup running python command "get_time_range" 2010-04-17 10:42:47,693 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-04-17 10:42:47,694 DEBUG quick_subs extracting time range 2010-04-17 10:42:47,694 DEBUG quick_subs start_end_time 2010/04/06 13:17:16 to 2010/04/17 10:39:52 2010-04-17 10:42:47,694 DEBUG quick_subs dd0: 95.553657 dd1: 106.444352 2010-04-17 10:42:47,695 DEBUG quick_adcp loaded_time_range is 2010/04/06 13:17:16 to 2010/04/17 10:39:52 2010-04-17 10:42:47,695 DEBUG quick_adcp (95.553657 to 106.444352) 2010-04-17 10:42:47,695 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,696 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/adcpdb 2010-04-17 10:42:47,696 DEBUG quick_setup running python command "lst_conf" 2010-04-17 10:42:47,696 DEBUG quick_subs dbname: a_oc output: a_oc.cnh time_ranges: all 2010-04-17 10:42:47,697 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-04-17 10:42:47,725 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-04-17 10:42:47,726 DEBUG quick_run executing commands from /home/data/oc459_02/proc/os75nb/edit 2010-04-17 10:42:47,726 DEBUG quick_run setup.m exists. not replacing 2010-04-17 10:42:47,726 DEBUG quick_run asetup.m exists. not replacing 2010-04-17 10:42:47,727 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-04-17 10:42:47,727 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-04-17 10:42:47,727 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,727 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/edit 2010-04-17 10:42:47,728 DEBUG quick_setup running python command "setflags" 2010-04-17 10:42:47,728 DEBUG quick_subs dbname: ../adcpdb/a_oc pg_min: 50 set_range_bit time_ranges: all 2010-04-17 10:42:47,728 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-04-17 10:42:47,798 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-04-17 10:42:47,799 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,799 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:42:47,799 DEBUG quick_setup running python command "catnav" 2010-04-17 10:42:47,804 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-04-17 10:42:47,804 DEBUG quick_run hcorr_inst is ashtech 2010-04-17 10:42:47,805 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-04-17 10:42:47,805 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:47,805 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/cal/rotate 2010-04-17 10:42:47,805 DEBUG quick_setup running python command "lst_hdg" 2010-04-17 10:42:47,806 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-04-17 10:42:47,806 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-04-17 10:42:47,856 DEBUG quick_mpl Starting plot: hcorr 2010-04-17 10:42:47,960 DEBUG quick_mplplots found 10.890704 days of data 2010-04-17 10:42:47,961 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-04-17 10:42:47,961 DEBUG quick_mplplots printing 3 pages 2010-04-17 10:42:51,380 DEBUG quick_mpl Ending plot: hcorr 2010-04-17 10:42:51,381 DEBUG quick_run ------------ step 7: rotate ------------- 2010-04-17 10:42:51,381 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:51,381 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/cal/rotate 2010-04-17 10:42:51,381 DEBUG quick_setup running python command "rotated" 2010-04-17 10:42:51,433 DEBUG quick_subs last rotated time from log file: 2010/04/17 10:09:53 2010-04-17 10:42:51,433 DEBUG quick_subs time range of currently loaded data: 2010/04/06 13:17:16 to 2010/04/17 10:39:52 2010-04-17 10:42:51,433 DEBUG quick_subs (95.553657 to 106.444352) 2010-04-17 10:42:51,435 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-04-17 10:42:51,435 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:51,435 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/cal/rotate 2010-04-17 10:42:51,435 DEBUG quick_setup running python command "rotate" 2010-04-17 10:42:51,436 DEBUG quick_subs DB_NAME: ../../adcpdb/a_oc LOG_FILE: rotate.log TIME_RANGE: 2010/04/17 08:38:43 to 2010/04/17 10:40:08 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-04-17 10:42:51,436 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-04-17 10:42:51,444 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-04-17 10:42:51,444 DEBUG quick_setup nav/as_nav.tmp exists 2010-04-17 10:42:51,444 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:51,445 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:42:51,445 DEBUG quick_setup running python command "as_nav" 2010-04-17 10:42:51,445 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/04/06 13:17:16 to 2010/04/17 10:39:52 /* the whole time range */ 2010-04-17 10:42:51,446 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-04-17 10:42:51,537 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-04-17 10:42:51,537 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:51,538 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:42:51,538 DEBUG quick_setup running python command "refabs" 2010-04-17 10:42:51,538 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-04-17 10:42:51,539 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-04-17 10:42:51,610 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-04-17 10:42:51,611 DEBUG quick_setup nav/smoothr.tmp exists 2010-04-17 10:42:51,611 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:51,611 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:42:51,612 DEBUG quick_setup running python command "smoothr" 2010-04-17 10:42:51,612 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-04-17 10:42:51,612 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-04-17 10:42:51,945 DEBUG quick_adcp about to run numpy refsm 2010-04-17 10:42:51,946 DEBUG quick_npy Starting: refsm 2010-04-17 10:42:52,170 INFO nav dtmin = -0.50 dtmax = 0.50 2010-04-17 10:42:52,697 DEBUG quick_npy Ending: refsm 2010-04-17 10:42:52,697 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-04-17 10:42:52,697 DEBUG quick_setup nav/putnav.tmp exists 2010-04-17 10:42:52,698 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:42:52,698 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:42:52,698 DEBUG quick_setup running python command "putnav" 2010-04-17 10:42:52,698 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-04-17 10:42:52,699 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-04-17 10:42:52,802 DEBUG quick_adcp plotting navigation 2010-04-17 10:42:52,803 DEBUG quick_mpl Starting plot: nav 2010-04-17 10:42:53,891 DEBUG quick_mpl Ending plot: nav 2010-04-17 10:42:53,892 DEBUG quick_mpl Starting plot: refl 2010-04-17 10:42:54,350 DEBUG quick_mplplots found 10.880100 days of data 2010-04-17 10:42:54,350 DEBUG quick_mplplots start day is 95.000000 2010-04-17 10:42:54,350 DEBUG quick_mplplots figures with 2.000000 days per page 2010-04-17 10:42:54,351 DEBUG quick_mplplots printing 6 pages 2010-04-17 10:42:54,351 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-04-17 10:42:54,351 INFO quick_mplplots startdd is 95.0 2010-04-17 10:42:54,351 INFO quick_mplplots dt is 2.0 2010-04-17 10:43:00,097 DEBUG quick_mpl Ending plot: refl 2010-04-17 10:43:00,097 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-04-17 10:43:00,097 DEBUG quick_run find profile flags ------------ *** ------------- 2010-04-17 10:43:00,098 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:00,098 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/edit 2010-04-17 10:43:00,098 DEBUG quick_setup running python command "aedit" 2010-04-17 10:43:01,607 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-04-17 10:43:01,607 DEBUG quick_run starting in: /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:01,608 DEBUG quick_run executing commands from: edit 2010-04-17 10:43:01,611 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_oc abottom_tmp.asc 2010-04-17 10:43:01,619 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_oc abadprf_tmp.asc 2010-04-17 10:43:01,626 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_oc abadbin_tmp.asc 2010-04-17 10:43:01,650 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_oc 30 2010-04-17 10:43:01,660 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-04-17 10:43:01,724 DEBUG quick_run changing directories back to /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:01,725 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-04-17 10:43:01,725 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-04-17 10:43:01,726 DEBUG quick_setup nav/as_nav.tmp exists 2010-04-17 10:43:01,726 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:01,726 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:43:01,726 DEBUG quick_setup running python command "as_nav" 2010-04-17 10:43:01,727 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/04/06 13:17:16 to 2010/04/17 10:39:52 /* the whole time range */ 2010-04-17 10:43:01,727 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-04-17 10:43:01,820 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-04-17 10:43:01,821 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:01,821 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:43:01,821 DEBUG quick_setup running python command "refabs" 2010-04-17 10:43:01,821 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-04-17 10:43:01,822 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-04-17 10:43:01,892 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-04-17 10:43:01,892 DEBUG quick_setup nav/smoothr.tmp exists 2010-04-17 10:43:01,892 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:01,893 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:43:01,893 DEBUG quick_setup running python command "smoothr" 2010-04-17 10:43:01,893 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-04-17 10:43:01,894 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-04-17 10:43:02,217 DEBUG quick_adcp running refsm 2010-04-17 10:43:02,218 DEBUG quick_npy Starting: refsm 2010-04-17 10:43:02,437 INFO nav dtmin = -0.50 dtmax = 0.50 2010-04-17 10:43:02,892 DEBUG quick_npy Ending: refsm 2010-04-17 10:43:02,893 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-04-17 10:43:02,893 DEBUG quick_setup nav/putnav.tmp exists 2010-04-17 10:43:02,893 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:02,893 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:43:02,894 DEBUG quick_setup running python command "putnav" 2010-04-17 10:43:02,894 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: a_oc_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-04-17 10:43:02,894 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-04-17 10:43:02,991 DEBUG quick_mpl Starting plot: nav 2010-04-17 10:43:04,103 DEBUG quick_mpl Ending plot: nav 2010-04-17 10:43:04,104 DEBUG quick_mpl Starting plot: refl 2010-04-17 10:43:04,545 DEBUG quick_mplplots found 10.880100 days of data 2010-04-17 10:43:04,545 DEBUG quick_mplplots start day is 95.000000 2010-04-17 10:43:04,546 DEBUG quick_mplplots figures with 2.000000 days per page 2010-04-17 10:43:04,546 DEBUG quick_mplplots printing 6 pages 2010-04-17 10:43:04,546 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-04-17 10:43:04,546 INFO quick_mplplots startdd is 95.0 2010-04-17 10:43:04,555 INFO quick_mplplots dt is 2.0 2010-04-17 10:43:10,329 DEBUG quick_mpl Ending plot: refl 2010-04-17 10:43:10,329 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-04-17 10:43:10,329 DEBUG quick_setup edit/lst_temp.tmp exists 2010-04-17 10:43:10,330 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:10,330 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/edit 2010-04-17 10:43:10,330 DEBUG quick_setup running python command "lst_temp" 2010-04-17 10:43:10,330 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc.tem step_size= 1 year_base= 2010 time_ranges: all 2010-04-17 10:43:10,331 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-04-17 10:43:10,387 DEBUG quick_mpl Starting plot: temp 2010-04-17 10:43:10,470 DEBUG quick_mplplots plotting 3091 points 2010-04-17 10:43:11,141 DEBUG quick_mpl Ending plot: temp 2010-04-17 10:43:11,142 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-04-17 10:43:11,142 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-04-17 10:43:11,143 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:11,143 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/cal/botmtrk 2010-04-17 10:43:11,143 DEBUG quick_setup running python command "lst_btrk" 2010-04-17 10:43:11,143 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: a_oc.btm step_size= 1 year_base= 2010 time_ranges: 2010/04/06 13:17:16 to 2010/04/17 10:39:52 /* whole time range */ 2010-04-17 10:43:11,144 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-04-17 10:43:11,170 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-04-17 10:43:11,171 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:11,171 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/cal/botmtrk 2010-04-17 10:43:11,171 DEBUG quick_setup running python command "refabsbt" 2010-04-17 10:43:11,172 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.btm fix_file: ../../nav/a_oc.gps output: a_oc.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-04-17 10:43:11,172 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-04-17 10:43:11,229 DEBUG quick_mpl Starting plot: btcal 2010-04-17 10:43:12,593 DEBUG quick_mpl Ending plot: btcal 2010-04-17 10:43:12,593 DEBUG quick_setup nav/as_nav.tmp exists 2010-04-17 10:43:12,594 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:12,594 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/nav 2010-04-17 10:43:12,594 DEBUG quick_setup running python command "as_nav" 2010-04-17 10:43:12,594 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/04/06 13:17:16 to 2010/04/17 10:39:52 /* the whole time range */ 2010-04-17 10:43:12,595 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-04-17 10:43:12,693 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-04-17 10:43:12,693 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:12,693 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/cal/watertrk 2010-04-17 10:43:12,694 DEBUG quick_setup running python command "timslip" 2010-04-17 10:43:12,694 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_oc.gps reference_file: ../../nav/a_oc.nav output_file: a_oc_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-04-17 10:43:12,694 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-04-17 10:43:12,731 DEBUG quick_mpl Starting plot: wtcal 2010-04-17 10:43:12,739 DEBUG quick_mplplots Found 96 calibration points 2010-04-17 10:43:15,337 DEBUG quick_mpl Ending plot: wtcal 2010-04-17 10:43:15,337 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-04-17 10:43:15,338 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:15,338 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/vector 2010-04-17 10:43:15,338 DEBUG quick_setup running python command "timegrid" 2010-04-17 10:43:15,339 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-04-17 10:43:15,347 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:15,347 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/vector 2010-04-17 10:43:15,347 DEBUG quick_setup running python command "as_vect" 2010-04-17 10:43:15,348 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-04-17 10:43:15,468 DEBUG quick_asect done making vector matfiles 2010-04-17 10:43:15,469 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:15,469 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/contour 2010-04-17 10:43:15,469 DEBUG quick_setup running python command "timegrid" 2010-04-17 10:43:15,470 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2010-04-17 10:43:15,482 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:15,482 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/contour 2010-04-17 10:43:15,483 DEBUG quick_setup running python command "as_cont" 2010-04-17 10:43:15,483 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-04-17 10:43:15,668 DEBUG quick_setup starting in /home/data/oc459_02/proc/os75nb 2010-04-17 10:43:15,668 DEBUG quick_setup executing commands from /home/data/oc459_02/proc/os75nb/contour 2010-04-17 10:43:15,668 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_oc 2010-04-17 10:43:16,055 DEBUG quick_asect done running getmat with "allbins" 2010-04-17 10:43:16,117 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-04-17 10:43:16,118 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-04-17 10:43:16,118 DEBUG root matfile is contour/contour_uv.mat 2010-04-17 10:43:16,124 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-04-17 10:43:16,124 DEBUG root matfile is vector/vector_uv.mat 2010-04-17 10:43:16,125 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-04-17 10:43:16,126 DEBUG root matfile is contour/contour_xy.mat 2010-04-17 10:43:16,126 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-04-17 10:43:16,126 DEBUG root matfile is vector/vector_xy.mat 2010-04-17 10:43:16,127 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-04-17 10:43:16,127 DEBUG root about to copy file edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2010-04-17 10:43:16,128 INFO root copying edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2010-04-17 10:43:16,128 INFO root Ending quick_adcp.py 2010-04-17 10:43:16,204 DEBUG quick_setup killed matlab engine