2009-08-05 09:05:24,443 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype nb --cfgbase oc454_2 --cruisename oc454_2 --instclass os --instname os75 --dbname a_oc --datatype uhdas --datadir /home/data/oc454_2/raw/os75 --cfgpath /home/data/oc454_2/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech ## not using topo for editing ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto 2009-08-05 09:05:24,446 DEBUG quick_adcp progdir = /home/currents/programs 2009-08-05 09:05:24,446 DEBUG quick_adcp binos = lnx 2009-08-05 09:05:24,447 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-08-05 09:05:24,447 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-08-05 09:05:24,447 DEBUG quick_setup processing data logged with uhdas: 2009-08-05 09:05:24,447 DEBUG quick_setup datatype is uhdas 2009-08-05 09:05:24,447 DEBUG quick_setup pingtype is nb 2009-08-05 09:05:24,448 DEBUG quick_setup instclass is os 2009-08-05 09:05:24,448 DEBUG quick_setup no post-processing heading correction will be used 2009-08-05 09:05:24,448 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-08-05 09:05:24,468 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'oc454_2',... 'cfgpath' , '/home/data/oc454_2/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-08-05 09:05:24,468 DEBUG quick_setup ------- starting Matlab engine ------- 2009-08-05 09:05:24,468 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-08-05 09:05:24,472 DEBUG call_matlab starting to wait for initial prompt 2009-08-05 09:05:25,610 DEBUG call_matlab received initial prompt 2009-08-05 09:05:25,861 DEBUG quick_adcp cwd is /home/data/oc454_2/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-08-05 09:05:25,861 DEBUG quick_adcp original fix file is a_oc.gps 2009-08-05 09:05:25,862 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-08-05 09:05:25,862 DEBUG quick_asect extracting matlab files for os75, nb pings 2009-08-05 09:05:26,017 DEBUG quick_subs found 101 files using wildcard expansion from "/home/data/oc454_2/raw/os75/*.raw" 2009-08-05 09:05:26,017 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/oc454_2/raw/os75/oc2009_208_11088.raw /home/data/oc454_2/raw/os75/oc2009_208_14400.raw /home/data/oc454_2/raw/os75/oc2009_208_21600.raw /home/data/oc454_2/raw/os75/oc2009_208_28800.raw /home/data/oc454_2/raw/os75/oc2009_208_36000.raw /home/data/oc454_2/raw/os75/oc2009_208_43200.raw /home/data/oc454_2/raw/os75/oc2009_208_50400.raw /home/data/oc454_2/raw/os75/oc2009_208_57600.raw /home/data/oc454_2/raw/os75/oc2009_208_64800.raw /home/data/oc454_2/raw/os75/oc2009_208_72000.raw /home/data/oc454_2/raw/os75/oc2009_208_79200.raw /home/data/oc454_2/raw/os75/oc2009_209_00000.raw /home/data/oc454_2/raw/os75/oc2009_209_07200.raw /home/data/oc454_2/raw/os75/oc2009_209_14400.raw /home/data/oc454_2/raw/os75/oc2009_209_21600.raw /home/data/oc454_2/raw/os75/oc2009_209_28800.raw /home/data/oc454_2/raw/os75/oc2009_209_36000.raw /home/data/oc454_2/raw/os75/oc2009_209_43200.raw /home/data/oc454_2/raw/os75/oc2009_209_50400.raw /home/data/oc454_2/raw/os75/oc2009_209_57600.raw /home/data/oc454_2/raw/os75/oc2009_209_64800.raw /home/data/oc454_2/raw/os75/oc2009_209_72000.raw /home/data/oc454_2/raw/os75/oc2009_209_79200.raw /home/data/oc454_2/raw/os75/oc2009_210_00000.raw /home/data/oc454_2/raw/os75/oc2009_210_07200.raw /home/data/oc454_2/raw/os75/oc2009_210_14400.raw /home/data/oc454_2/raw/os75/oc2009_210_21600.raw /home/data/oc454_2/raw/os75/oc2009_210_28800.raw /home/data/oc454_2/raw/os75/oc2009_210_36000.raw /home/data/oc454_2/raw/os75/oc2009_210_43200.raw /home/data/oc454_2/raw/os75/oc2009_210_50400.raw /home/data/oc454_2/raw/os75/oc2009_210_57600.raw /home/data/oc454_2/raw/os75/oc2009_210_64800.raw /home/data/oc454_2/raw/os75/oc2009_210_72000.raw /home/data/oc454_2/raw/os75/oc2009_210_79200.raw /home/data/oc454_2/raw/os75/oc2009_211_00000.raw /home/data/oc454_2/raw/os75/oc2009_211_07200.raw /home/data/oc454_2/raw/os75/oc2009_211_14400.raw /home/data/oc454_2/raw/os75/oc2009_211_21600.raw /home/data/oc454_2/raw/os75/oc2009_211_28800.raw /home/data/oc454_2/raw/os75/oc2009_211_36000.raw /home/data/oc454_2/raw/os75/oc2009_211_43200.raw /home/data/oc454_2/raw/os75/oc2009_211_50400.raw /home/data/oc454_2/raw/os75/oc2009_211_57600.raw /home/data/oc454_2/raw/os75/oc2009_211_64800.raw /home/data/oc454_2/raw/os75/oc2009_211_72000.raw /home/data/oc454_2/raw/os75/oc2009_211_79200.raw /home/data/oc454_2/raw/os75/oc2009_212_00000.raw /home/data/oc454_2/raw/os75/oc2009_212_07200.raw /home/data/oc454_2/raw/os75/oc2009_212_14400.raw /home/data/oc454_2/raw/os75/oc2009_212_21600.raw /home/data/oc454_2/raw/os75/oc2009_212_28800.raw /home/data/oc454_2/raw/os75/oc2009_212_36000.raw /home/data/oc454_2/raw/os75/oc2009_212_43200.raw /home/data/oc454_2/raw/os75/oc2009_212_50400.raw /home/data/oc454_2/raw/os75/oc2009_212_57600.raw /home/data/oc454_2/raw/os75/oc2009_212_64800.raw /home/data/oc454_2/raw/os75/oc2009_212_72000.raw /home/data/oc454_2/raw/os75/oc2009_212_79200.raw /home/data/oc454_2/raw/os75/oc2009_213_00000.raw /home/data/oc454_2/raw/os75/oc2009_213_07200.raw /home/data/oc454_2/raw/os75/oc2009_213_14400.raw /home/data/oc454_2/raw/os75/oc2009_213_21600.raw /home/data/oc454_2/raw/os75/oc2009_213_28800.raw /home/data/oc454_2/raw/os75/oc2009_213_34521.raw /home/data/oc454_2/raw/os75/oc2009_213_36000.raw /home/data/oc454_2/raw/os75/oc2009_213_43200.raw /home/data/oc454_2/raw/os75/oc2009_213_50400.raw /home/data/oc454_2/raw/os75/oc2009_213_57600.raw /home/data/oc454_2/raw/os75/oc2009_213_64800.raw /home/data/oc454_2/raw/os75/oc2009_213_72000.raw /home/data/oc454_2/raw/os75/oc2009_213_79200.raw /home/data/oc454_2/raw/os75/oc2009_214_00000.raw /home/data/oc454_2/raw/os75/oc2009_214_07200.raw /home/data/oc454_2/raw/os75/oc2009_214_14400.raw /home/data/oc454_2/raw/os75/oc2009_214_21600.raw /home/data/oc454_2/raw/os75/oc2009_214_28800.raw /home/data/oc454_2/raw/os75/oc2009_214_36000.raw /home/data/oc454_2/raw/os75/oc2009_214_43200.raw /home/data/oc454_2/raw/os75/oc2009_214_50400.raw /home/data/oc454_2/raw/os75/oc2009_214_57600.raw /home/data/oc454_2/raw/os75/oc2009_214_64800.raw /home/data/oc454_2/raw/os75/oc2009_214_72000.raw /home/data/oc454_2/raw/os75/oc2009_214_79200.raw /home/data/oc454_2/raw/os75/oc2009_215_00000.raw /home/data/oc454_2/raw/os75/oc2009_215_07200.raw /home/data/oc454_2/raw/os75/oc2009_215_14400.raw /home/data/oc454_2/raw/os75/oc2009_215_21600.raw /home/data/oc454_2/raw/os75/oc2009_215_28800.raw /home/data/oc454_2/raw/os75/oc2009_215_36000.raw /home/data/oc454_2/raw/os75/oc2009_215_43200.raw /home/data/oc454_2/raw/os75/oc2009_215_50400.raw /home/data/oc454_2/raw/os75/oc2009_215_57600.raw /home/data/oc454_2/raw/os75/oc2009_215_64800.raw /home/data/oc454_2/raw/os75/oc2009_215_72000.raw /home/data/oc454_2/raw/os75/oc2009_215_79200.raw /home/data/oc454_2/raw/os75/oc2009_216_00000.raw /home/data/oc454_2/raw/os75/oc2009_216_07200.raw /home/data/oc454_2/raw/os75/oc2009_216_14400.raw /home/data/oc454_2/raw/os75/oc2009_216_21600.raw /home/data/oc454_2/raw/os75/oc2009_216_28800.raw 2009-08-05 09:05:26,018 DEBUG quick_adcp LASTFILES invoked. using only 101 files from end of filelist 2009-08-05 09:05:26,018 DEBUG quick_adcp using delblks = 1 2009-08-05 09:05:26,018 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/oc454_2/raw/os75/oc2009_208_11088.raw /home/data/oc454_2/raw/os75/oc2009_208_14400.raw /home/data/oc454_2/raw/os75/oc2009_208_21600.raw /home/data/oc454_2/raw/os75/oc2009_208_28800.raw /home/data/oc454_2/raw/os75/oc2009_208_36000.raw /home/data/oc454_2/raw/os75/oc2009_208_43200.raw /home/data/oc454_2/raw/os75/oc2009_208_50400.raw /home/data/oc454_2/raw/os75/oc2009_208_57600.raw /home/data/oc454_2/raw/os75/oc2009_208_64800.raw /home/data/oc454_2/raw/os75/oc2009_208_72000.raw /home/data/oc454_2/raw/os75/oc2009_208_79200.raw /home/data/oc454_2/raw/os75/oc2009_209_00000.raw /home/data/oc454_2/raw/os75/oc2009_209_07200.raw /home/data/oc454_2/raw/os75/oc2009_209_14400.raw /home/data/oc454_2/raw/os75/oc2009_209_21600.raw /home/data/oc454_2/raw/os75/oc2009_209_28800.raw /home/data/oc454_2/raw/os75/oc2009_209_36000.raw /home/data/oc454_2/raw/os75/oc2009_209_43200.raw /home/data/oc454_2/raw/os75/oc2009_209_50400.raw /home/data/oc454_2/raw/os75/oc2009_209_57600.raw /home/data/oc454_2/raw/os75/oc2009_209_64800.raw /home/data/oc454_2/raw/os75/oc2009_209_72000.raw /home/data/oc454_2/raw/os75/oc2009_209_79200.raw /home/data/oc454_2/raw/os75/oc2009_210_00000.raw /home/data/oc454_2/raw/os75/oc2009_210_07200.raw /home/data/oc454_2/raw/os75/oc2009_210_14400.raw /home/data/oc454_2/raw/os75/oc2009_210_21600.raw /home/data/oc454_2/raw/os75/oc2009_210_28800.raw /home/data/oc454_2/raw/os75/oc2009_210_36000.raw /home/data/oc454_2/raw/os75/oc2009_210_43200.raw /home/data/oc454_2/raw/os75/oc2009_210_50400.raw /home/data/oc454_2/raw/os75/oc2009_210_57600.raw /home/data/oc454_2/raw/os75/oc2009_210_64800.raw /home/data/oc454_2/raw/os75/oc2009_210_72000.raw /home/data/oc454_2/raw/os75/oc2009_210_79200.raw /home/data/oc454_2/raw/os75/oc2009_211_00000.raw /home/data/oc454_2/raw/os75/oc2009_211_07200.raw /home/data/oc454_2/raw/os75/oc2009_211_14400.raw /home/data/oc454_2/raw/os75/oc2009_211_21600.raw /home/data/oc454_2/raw/os75/oc2009_211_28800.raw /home/data/oc454_2/raw/os75/oc2009_211_36000.raw /home/data/oc454_2/raw/os75/oc2009_211_43200.raw /home/data/oc454_2/raw/os75/oc2009_211_50400.raw /home/data/oc454_2/raw/os75/oc2009_211_57600.raw /home/data/oc454_2/raw/os75/oc2009_211_64800.raw /home/data/oc454_2/raw/os75/oc2009_211_72000.raw /home/data/oc454_2/raw/os75/oc2009_211_79200.raw /home/data/oc454_2/raw/os75/oc2009_212_00000.raw /home/data/oc454_2/raw/os75/oc2009_212_07200.raw /home/data/oc454_2/raw/os75/oc2009_212_14400.raw /home/data/oc454_2/raw/os75/oc2009_212_21600.raw /home/data/oc454_2/raw/os75/oc2009_212_28800.raw /home/data/oc454_2/raw/os75/oc2009_212_36000.raw /home/data/oc454_2/raw/os75/oc2009_212_43200.raw /home/data/oc454_2/raw/os75/oc2009_212_50400.raw /home/data/oc454_2/raw/os75/oc2009_212_57600.raw /home/data/oc454_2/raw/os75/oc2009_212_64800.raw /home/data/oc454_2/raw/os75/oc2009_212_72000.raw /home/data/oc454_2/raw/os75/oc2009_212_79200.raw /home/data/oc454_2/raw/os75/oc2009_213_00000.raw /home/data/oc454_2/raw/os75/oc2009_213_07200.raw /home/data/oc454_2/raw/os75/oc2009_213_14400.raw /home/data/oc454_2/raw/os75/oc2009_213_21600.raw /home/data/oc454_2/raw/os75/oc2009_213_28800.raw /home/data/oc454_2/raw/os75/oc2009_213_34521.raw /home/data/oc454_2/raw/os75/oc2009_213_36000.raw /home/data/oc454_2/raw/os75/oc2009_213_43200.raw /home/data/oc454_2/raw/os75/oc2009_213_50400.raw /home/data/oc454_2/raw/os75/oc2009_213_57600.raw /home/data/oc454_2/raw/os75/oc2009_213_64800.raw /home/data/oc454_2/raw/os75/oc2009_213_72000.raw /home/data/oc454_2/raw/os75/oc2009_213_79200.raw /home/data/oc454_2/raw/os75/oc2009_214_00000.raw /home/data/oc454_2/raw/os75/oc2009_214_07200.raw /home/data/oc454_2/raw/os75/oc2009_214_14400.raw /home/data/oc454_2/raw/os75/oc2009_214_21600.raw /home/data/oc454_2/raw/os75/oc2009_214_28800.raw /home/data/oc454_2/raw/os75/oc2009_214_36000.raw /home/data/oc454_2/raw/os75/oc2009_214_43200.raw /home/data/oc454_2/raw/os75/oc2009_214_50400.raw /home/data/oc454_2/raw/os75/oc2009_214_57600.raw /home/data/oc454_2/raw/os75/oc2009_214_64800.raw /home/data/oc454_2/raw/os75/oc2009_214_72000.raw /home/data/oc454_2/raw/os75/oc2009_214_79200.raw /home/data/oc454_2/raw/os75/oc2009_215_00000.raw /home/data/oc454_2/raw/os75/oc2009_215_07200.raw /home/data/oc454_2/raw/os75/oc2009_215_14400.raw /home/data/oc454_2/raw/os75/oc2009_215_21600.raw /home/data/oc454_2/raw/os75/oc2009_215_28800.raw /home/data/oc454_2/raw/os75/oc2009_215_36000.raw /home/data/oc454_2/raw/os75/oc2009_215_43200.raw /home/data/oc454_2/raw/os75/oc2009_215_50400.raw /home/data/oc454_2/raw/os75/oc2009_215_57600.raw /home/data/oc454_2/raw/os75/oc2009_215_64800.raw /home/data/oc454_2/raw/os75/oc2009_215_72000.raw /home/data/oc454_2/raw/os75/oc2009_215_79200.raw /home/data/oc454_2/raw/os75/oc2009_216_00000.raw /home/data/oc454_2/raw/os75/oc2009_216_07200.raw /home/data/oc454_2/raw/os75/oc2009_216_14400.raw /home/data/oc454_2/raw/os75/oc2009_216_21600.raw /home/data/oc454_2/raw/os75/oc2009_216_28800.raw 2009-08-05 09:05:26,020 DEBUG quick_adcp Wed Aug 5 09:05:26 2009 running quick_adcp.py as follows: --cntfile /home/data/oc454_2/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_oc cbasename contour dbname a_oc dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 20 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_oc allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase oc454_2 cfgpath /home/data/oc454_2/proc/os75nb/config cntfile /home/data/oc454_2/proc/os75nb/os75nb_qpy.cnt commands None cruisename oc454_2 data_def vmadcp.def datadir /home/data/oc454_2/raw/os75 datafile_glob *.raw datatype uhdas dbname a_oc dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/oc454_2/raw/os75/oc2009_208_11088.raw', '/home/data/oc454_2/raw/os75/oc2009_208_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_208_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_208_28800.raw', '/home/data/oc454_2/raw/os75/oc2009_208_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_208_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_208_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_208_57600.raw', '/home/data/oc454_2/raw/os75/oc2009_208_64800.raw', '/home/data/oc454_2/raw/os75/oc2009_208_72000.raw', '/home/data/oc454_2/raw/os75/oc2009_208_79200.raw', '/home/data/oc454_2/raw/os75/oc2009_209_00000.raw', '/home/data/oc454_2/raw/os75/oc2009_209_07200.raw', '/home/data/oc454_2/raw/os75/oc2009_209_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_209_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_209_28800.raw', '/home/data/oc454_2/raw/os75/oc2009_209_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_209_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_209_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_209_57600.raw', 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'/home/data/oc454_2/raw/os75/oc2009_214_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_214_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_214_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_214_57600.raw', '/home/data/oc454_2/raw/os75/oc2009_214_64800.raw', '/home/data/oc454_2/raw/os75/oc2009_214_72000.raw', '/home/data/oc454_2/raw/os75/oc2009_214_79200.raw', '/home/data/oc454_2/raw/os75/oc2009_215_00000.raw', '/home/data/oc454_2/raw/os75/oc2009_215_07200.raw', '/home/data/oc454_2/raw/os75/oc2009_215_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_215_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_215_28800.raw', '/home/data/oc454_2/raw/os75/oc2009_215_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_215_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_215_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_215_57600.raw', '/home/data/oc454_2/raw/os75/oc2009_215_64800.raw', '/home/data/oc454_2/raw/os75/oc2009_215_72000.raw', '/home/data/oc454_2/raw/os75/oc2009_215_79200.raw', '/home/data/oc454_2/raw/os75/oc2009_216_00000.raw', '/home/data/oc454_2/raw/os75/oc2009_216_07200.raw', '/home/data/oc454_2/raw/os75/oc2009_216_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_216_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_216_28800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 20 fixfile a_oc.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'oc454_2',... 'cfgpath' , '/home/data/oc454_2/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_oc.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2009 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/oc454_2/raw/os75/oc2009_208_11088.raw', '/home/data/oc454_2/raw/os75/oc2009_208_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_208_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_208_28800.raw', '/home/data/oc454_2/raw/os75/oc2009_208_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_208_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_208_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_208_57600.raw', 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'/home/data/oc454_2/raw/os75/oc2009_213_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_213_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_213_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_213_57600.raw', '/home/data/oc454_2/raw/os75/oc2009_213_64800.raw', '/home/data/oc454_2/raw/os75/oc2009_213_72000.raw', '/home/data/oc454_2/raw/os75/oc2009_213_79200.raw', '/home/data/oc454_2/raw/os75/oc2009_214_00000.raw', '/home/data/oc454_2/raw/os75/oc2009_214_07200.raw', '/home/data/oc454_2/raw/os75/oc2009_214_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_214_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_214_28800.raw', '/home/data/oc454_2/raw/os75/oc2009_214_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_214_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_214_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_214_57600.raw', '/home/data/oc454_2/raw/os75/oc2009_214_64800.raw', '/home/data/oc454_2/raw/os75/oc2009_214_72000.raw', '/home/data/oc454_2/raw/os75/oc2009_214_79200.raw', '/home/data/oc454_2/raw/os75/oc2009_215_00000.raw', '/home/data/oc454_2/raw/os75/oc2009_215_07200.raw', '/home/data/oc454_2/raw/os75/oc2009_215_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_215_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_215_28800.raw', '/home/data/oc454_2/raw/os75/oc2009_215_36000.raw', '/home/data/oc454_2/raw/os75/oc2009_215_43200.raw', '/home/data/oc454_2/raw/os75/oc2009_215_50400.raw', '/home/data/oc454_2/raw/os75/oc2009_215_57600.raw', '/home/data/oc454_2/raw/os75/oc2009_215_64800.raw', '/home/data/oc454_2/raw/os75/oc2009_215_72000.raw', '/home/data/oc454_2/raw/os75/oc2009_215_79200.raw', '/home/data/oc454_2/raw/os75/oc2009_216_00000.raw', '/home/data/oc454_2/raw/os75/oc2009_216_07200.raw', '/home/data/oc454_2/raw/os75/oc2009_216_14400.raw', '/home/data/oc454_2/raw/os75/oc2009_216_21600.raw', '/home/data/oc454_2/raw/os75/oc2009_216_28800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit 0 vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-08-05 09:05:26,021 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-08-05 09:05:26,021 DEBUG quick_run scanning files for time ranges... 2009-08-05 09:05:26,021 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb/scan 2009-08-05 09:05:26,022 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/scan 2009-08-05 09:05:26,022 DEBUG quick_setup running python command "method" 2009-08-05 09:05:26,022 DEBUG call_matlab --> clear all 2009-08-05 09:05:26,028 DEBUG call_matlab <-- >> 2009-08-05 09:05:26,028 DEBUG call_matlab --> close all 2009-08-05 09:05:26,097 DEBUG call_matlab <-- >> 2009-08-05 09:05:26,097 DEBUG call_matlab --> cd /home/data/oc454_2/proc/os75nb/scan 2009-08-05 09:05:26,100 DEBUG call_matlab <-- >> 2009-08-05 09:05:26,100 DEBUG call_matlab --> scan_tmp 2009-08-05 09:05:27,082 DEBUG call_matlab <-- getting config files from "/home/data/oc454_2/proc/os75nb/config" running "oc454_2_cfg.m" running "oc454_2_proc.m" writing scan info to a_oc.scn >> 2009-08-05 09:05:27,082 DEBUG quick_run writing time range from a_oc.scn to a_oc.tr 2009-08-05 09:05:27,082 DEBUG quick_run getting scan time range 2009-08-05 09:05:27,083 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,083 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/scan 2009-08-05 09:05:27,083 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,083 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,085 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,086 DEBUG quick_subs start_end_time 2009/07/28 03:04:51 to 2009/08/05 09:02:20 2009-08-05 09:05:27,086 DEBUG quick_subs dd0: 208.128368 dd1: 216.376620 2009-08-05 09:05:27,086 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,087 DEBUG quick_adcp looking for database with adcpdb/a_oc*.blk 2009-08-05 09:05:27,088 DEBUG quick_adcp database found: listing blocks 2009-08-05 09:05:27,088 DEBUG quick_subs removing a_ocdir.blk 2009-08-05 09:05:27,089 DEBUG quick_subs about to run mkblkdir 2009-08-05 09:05:27,089 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-05 09:05:27,089 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-05 09:05:27,100 DEBUG quick_subs database passes. 2009-08-05 09:05:27,101 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2009-08-05 09:05:27,101 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,101 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,102 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,102 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,102 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,103 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/05 08:32:03 2009-08-05 09:05:27,103 DEBUG quick_subs dd0: 208.131875 dd1: 216.355590 2009-08-05 09:05:27,103 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2009-08-05 09:05:27,104 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,104 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,104 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,104 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,105 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,105 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/05 08:32:03 2009-08-05 09:05:27,105 DEBUG quick_subs dd0: 208.131875 dd1: 216.355590 2009-08-05 09:05:27,106 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-08-05 09:05:27,106 DEBUG quick_adcp origdb_time_range is 2009/07/28 03:09:54 to 2009/08/05 08:32:03 2009-08-05 09:05:27,106 DEBUG quick_adcp (208.131875 to 216.355590) 2009-08-05 09:05:27,107 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-08-05 09:05:27,107 DEBUG quick_subs getting current (remaining after deletion) database times 2009-08-05 09:05:27,107 DEBUG quick_subs ['adcpdb/a_oc013.blk', 'adcpdb/a_ocdir.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc004.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc016.blk', 'adcpdb/a_oc003.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_oc008.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_oc014.blk', 'adcpdb/a_oc015.blk', 'adcpdb/a_oc012.blk', 'adcpdb/a_oc017.blk'] 2009-08-05 09:05:27,108 DEBUG quick_subs length is 18 2009-08-05 09:05:27,108 DEBUG quick_subs removing a_ocdir.blk 2009-08-05 09:05:27,108 DEBUG quick_subs about to run mkblkdir 2009-08-05 09:05:27,109 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-05 09:05:27,109 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-05 09:05:27,120 DEBUG quick_subs database passes. 2009-08-05 09:05:27,120 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2009-08-05 09:05:27,120 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,121 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,121 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,121 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,122 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,122 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/05 08:32:03 2009-08-05 09:05:27,122 DEBUG quick_subs dd0: 208.131875 dd1: 216.355590 2009-08-05 09:05:27,123 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,123 DEBUG quick_subs reading time range 2009-08-05 09:05:27,123 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/05 08:32:03 2009-08-05 09:05:27,123 DEBUG quick_subs dd0: 208.131875 dd1: 216.355590 2009-08-05 09:05:27,124 INFO quick_subs Wed Aug 5 09:05:27 2009 2009-08-05 09:05:27,124 INFO quick_subs checking database time range by listblk 2009-08-05 09:05:27,124 DEBUG quick_subs removing a_ocdir.blk 2009-08-05 09:05:27,125 DEBUG quick_subs about to run mkblkdir 2009-08-05 09:05:27,125 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-05 09:05:27,125 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-05 09:05:27,136 DEBUG quick_subs database passes. 2009-08-05 09:05:27,136 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2009-08-05 09:05:27,137 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,137 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,137 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,137 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,138 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,138 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/05 08:32:03 2009-08-05 09:05:27,139 DEBUG quick_subs dd0: 208.131875 dd1: 216.355590 2009-08-05 09:05:27,141 INFO quick_subs found line /* 0 n= 146 a_oc001.blk */ 2009/07/28 03:09:54 to 2009/07/28 15:17:04 2009-08-05 09:05:27,141 INFO quick_subs found line /* 1 n= 146 a_oc002.blk */ 2009/07/28 15:22:04 to 2009/07/29 03:29:32 2009-08-05 09:05:27,141 INFO quick_subs found line /* 2 n= 146 a_oc003.blk */ 2009/07/29 03:34:33 to 2009/07/29 15:41:55 2009-08-05 09:05:27,142 INFO quick_subs found line /* 3 n= 146 a_oc004.blk */ 2009/07/29 15:46:56 to 2009/07/30 03:54:06 2009-08-05 09:05:27,142 INFO quick_subs found line /* 4 n= 146 a_oc005.blk */ 2009/07/30 03:59:06 to 2009/07/30 16:06:26 2009-08-05 09:05:27,142 INFO quick_subs found line /* 5 n= 146 a_oc006.blk */ 2009/07/30 16:11:27 to 2009/07/31 04:18:47 2009-08-05 09:05:27,142 INFO quick_subs found line /* 6 n= 146 a_oc007.blk */ 2009/07/31 04:23:48 to 2009/07/31 16:36:24 2009-08-05 09:05:27,143 INFO quick_subs found line /* 7 n= 146 a_oc008.blk */ 2009/07/31 16:41:26 to 2009/08/01 04:49:18 2009-08-05 09:05:27,143 INFO quick_subs found line /* 8 n= 146 a_oc009.blk */ 2009/08/01 04:54:19 to 2009/08/01 17:02:05 2009-08-05 09:05:27,143 INFO quick_subs found line /* 9 n= 146 a_oc010.blk */ 2009/08/01 17:07:06 to 2009/08/02 05:15:01 2009-08-05 09:05:27,143 INFO quick_subs found line /* 10 n= 51 a_oc011.blk */ 2009/08/02 05:20:02 to 2009/08/02 09:31:00 2009-08-05 09:05:27,143 INFO quick_subs found line /* 11 n= 146 a_oc012.blk */ 2009/08/02 09:40:25 to 2009/08/02 21:48:10 2009-08-05 09:05:27,144 INFO quick_subs found line /* 12 n= 146 a_oc013.blk */ 2009/08/02 21:53:11 to 2009/08/03 10:01:09 2009-08-05 09:05:27,144 INFO quick_subs found line /* 13 n= 146 a_oc014.blk */ 2009/08/03 10:06:11 to 2009/08/03 22:13:51 2009-08-05 09:05:27,144 INFO quick_subs found line /* 14 n= 146 a_oc015.blk */ 2009/08/03 22:18:52 to 2009/08/04 10:26:22 2009-08-05 09:05:27,144 INFO quick_subs found line /* 15 n= 146 a_oc016.blk */ 2009/08/04 10:31:23 to 2009/08/04 22:39:59 2009-08-05 09:05:27,145 INFO quick_subs found line /* 16 n= 118 a_oc017.blk */ 2009/08/04 22:45:00 to 2009/08/05 08:32:03 2009-08-05 09:05:27,145 INFO quick_subs scan data start at 208.1283681 2009-08-05 09:05:27,145 INFO quick_subs scan time range: 2009/07/28 03:04:51 to 2009/08/05 09:02:20 2009-08-05 09:05:27,145 INFO quick_subs codasdb ends at 216.3555903 (2009/08/05 08:32:03) 2009-08-05 09:05:27,145 DEBUG quick_subs ... changed dirs, in /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,146 DEBUG quick_subs deleting these files: ['a_oc017.blk'] 2009-08-05 09:05:27,147 DEBUG quick_subs getting current (remaining after deletion) database times 2009-08-05 09:05:27,147 DEBUG quick_subs ['adcpdb/a_oc013.blk', 'adcpdb/a_oc002.blk', 'adcpdb/a_oc006.blk', 'adcpdb/a_oc004.blk', 'adcpdb/a_oc007.blk', 'adcpdb/a_oc009.blk', 'adcpdb/a_oc016.blk', 'adcpdb/a_oc003.blk', 'adcpdb/a_oc005.blk', 'adcpdb/a_oc011.blk', 'adcpdb/a_oc008.blk', 'adcpdb/a_oc001.blk', 'adcpdb/a_oc010.blk', 'adcpdb/a_oc014.blk', 'adcpdb/a_oc015.blk', 'adcpdb/a_oc012.blk'] 2009-08-05 09:05:27,147 DEBUG quick_subs length is 16 2009-08-05 09:05:27,148 DEBUG quick_subs about to run mkblkdir 2009-08-05 09:05:27,148 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-05 09:05:27,148 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-05 09:05:27,159 DEBUG quick_subs database passes. 2009-08-05 09:05:27,159 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2009-08-05 09:05:27,159 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,160 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,160 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,160 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,161 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,161 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/04 22:39:59 2009-08-05 09:05:27,161 DEBUG quick_subs dd0: 208.131875 dd1: 215.944433 2009-08-05 09:05:27,162 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,162 DEBUG quick_subs reading time range 2009-08-05 09:05:27,162 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/04 22:39:59 2009-08-05 09:05:27,162 DEBUG quick_subs dd0: 208.131875 dd1: 215.944433 2009-08-05 09:05:27,163 DEBUG quick_subs codas database currently goes from 2009/07/28 03:09:54 to 2009/08/04 22:39:59 2009-08-05 09:05:27,163 DEBUG quick_subs (208.131875 to 215.944433) 2009-08-05 09:05:27,164 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016 2009-08-05 09:05:27,166 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 2009-08-05 09:05:27,166 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016'] 2009-08-05 09:05:27,166 DEBUG quick_subs checked: unloaded blkstrs: ['017'] 2009-08-05 09:05:27,166 DEBUG quick_subs first unloaded file is load/ens_blk017.cmd 2009-08-05 09:05:27,168 DEBUG quick_subs data goes from 2009/08/04 22:45:00 to 2009/08/05 09:02:20 2009-08-05 09:05:27,168 DEBUG quick_subs (215.947917 to 216.376620) 2009-08-05 09:05:27,168 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/oc454_2/raw/os75/oc2009_208_11088.raw /home/data/oc454_2/raw/os75/oc2009_208_14400.raw /home/data/oc454_2/raw/os75/oc2009_208_21600.raw /home/data/oc454_2/raw/os75/oc2009_208_28800.raw /home/data/oc454_2/raw/os75/oc2009_208_36000.raw /home/data/oc454_2/raw/os75/oc2009_208_43200.raw /home/data/oc454_2/raw/os75/oc2009_208_50400.raw /home/data/oc454_2/raw/os75/oc2009_208_57600.raw /home/data/oc454_2/raw/os75/oc2009_208_64800.raw /home/data/oc454_2/raw/os75/oc2009_208_72000.raw /home/data/oc454_2/raw/os75/oc2009_208_79200.raw /home/data/oc454_2/raw/os75/oc2009_209_00000.raw /home/data/oc454_2/raw/os75/oc2009_209_07200.raw /home/data/oc454_2/raw/os75/oc2009_209_14400.raw /home/data/oc454_2/raw/os75/oc2009_209_21600.raw /home/data/oc454_2/raw/os75/oc2009_209_28800.raw /home/data/oc454_2/raw/os75/oc2009_209_36000.raw /home/data/oc454_2/raw/os75/oc2009_209_43200.raw /home/data/oc454_2/raw/os75/oc2009_209_50400.raw /home/data/oc454_2/raw/os75/oc2009_209_57600.raw /home/data/oc454_2/raw/os75/oc2009_209_64800.raw /home/data/oc454_2/raw/os75/oc2009_209_72000.raw /home/data/oc454_2/raw/os75/oc2009_209_79200.raw /home/data/oc454_2/raw/os75/oc2009_210_00000.raw /home/data/oc454_2/raw/os75/oc2009_210_07200.raw /home/data/oc454_2/raw/os75/oc2009_210_14400.raw /home/data/oc454_2/raw/os75/oc2009_210_21600.raw /home/data/oc454_2/raw/os75/oc2009_210_28800.raw /home/data/oc454_2/raw/os75/oc2009_210_36000.raw /home/data/oc454_2/raw/os75/oc2009_210_43200.raw /home/data/oc454_2/raw/os75/oc2009_210_50400.raw /home/data/oc454_2/raw/os75/oc2009_210_57600.raw /home/data/oc454_2/raw/os75/oc2009_210_64800.raw /home/data/oc454_2/raw/os75/oc2009_210_72000.raw /home/data/oc454_2/raw/os75/oc2009_210_79200.raw /home/data/oc454_2/raw/os75/oc2009_211_00000.raw /home/data/oc454_2/raw/os75/oc2009_211_07200.raw /home/data/oc454_2/raw/os75/oc2009_211_14400.raw /home/data/oc454_2/raw/os75/oc2009_211_21600.raw /home/data/oc454_2/raw/os75/oc2009_211_28800.raw /home/data/oc454_2/raw/os75/oc2009_211_36000.raw /home/data/oc454_2/raw/os75/oc2009_211_43200.raw /home/data/oc454_2/raw/os75/oc2009_211_50400.raw /home/data/oc454_2/raw/os75/oc2009_211_57600.raw /home/data/oc454_2/raw/os75/oc2009_211_64800.raw /home/data/oc454_2/raw/os75/oc2009_211_72000.raw /home/data/oc454_2/raw/os75/oc2009_211_79200.raw /home/data/oc454_2/raw/os75/oc2009_212_00000.raw /home/data/oc454_2/raw/os75/oc2009_212_07200.raw /home/data/oc454_2/raw/os75/oc2009_212_14400.raw /home/data/oc454_2/raw/os75/oc2009_212_21600.raw /home/data/oc454_2/raw/os75/oc2009_212_28800.raw /home/data/oc454_2/raw/os75/oc2009_212_36000.raw /home/data/oc454_2/raw/os75/oc2009_212_43200.raw /home/data/oc454_2/raw/os75/oc2009_212_50400.raw /home/data/oc454_2/raw/os75/oc2009_212_57600.raw /home/data/oc454_2/raw/os75/oc2009_212_64800.raw /home/data/oc454_2/raw/os75/oc2009_212_72000.raw /home/data/oc454_2/raw/os75/oc2009_212_79200.raw /home/data/oc454_2/raw/os75/oc2009_213_00000.raw /home/data/oc454_2/raw/os75/oc2009_213_07200.raw /home/data/oc454_2/raw/os75/oc2009_213_14400.raw /home/data/oc454_2/raw/os75/oc2009_213_21600.raw /home/data/oc454_2/raw/os75/oc2009_213_28800.raw /home/data/oc454_2/raw/os75/oc2009_213_34521.raw /home/data/oc454_2/raw/os75/oc2009_213_36000.raw /home/data/oc454_2/raw/os75/oc2009_213_43200.raw /home/data/oc454_2/raw/os75/oc2009_213_50400.raw /home/data/oc454_2/raw/os75/oc2009_213_57600.raw /home/data/oc454_2/raw/os75/oc2009_213_64800.raw /home/data/oc454_2/raw/os75/oc2009_213_72000.raw /home/data/oc454_2/raw/os75/oc2009_213_79200.raw /home/data/oc454_2/raw/os75/oc2009_214_00000.raw /home/data/oc454_2/raw/os75/oc2009_214_07200.raw /home/data/oc454_2/raw/os75/oc2009_214_14400.raw /home/data/oc454_2/raw/os75/oc2009_214_21600.raw /home/data/oc454_2/raw/os75/oc2009_214_28800.raw /home/data/oc454_2/raw/os75/oc2009_214_36000.raw /home/data/oc454_2/raw/os75/oc2009_214_43200.raw /home/data/oc454_2/raw/os75/oc2009_214_50400.raw /home/data/oc454_2/raw/os75/oc2009_214_57600.raw /home/data/oc454_2/raw/os75/oc2009_214_64800.raw /home/data/oc454_2/raw/os75/oc2009_214_72000.raw /home/data/oc454_2/raw/os75/oc2009_214_79200.raw /home/data/oc454_2/raw/os75/oc2009_215_00000.raw /home/data/oc454_2/raw/os75/oc2009_215_07200.raw /home/data/oc454_2/raw/os75/oc2009_215_14400.raw /home/data/oc454_2/raw/os75/oc2009_215_21600.raw /home/data/oc454_2/raw/os75/oc2009_215_28800.raw /home/data/oc454_2/raw/os75/oc2009_215_36000.raw /home/data/oc454_2/raw/os75/oc2009_215_43200.raw /home/data/oc454_2/raw/os75/oc2009_215_50400.raw /home/data/oc454_2/raw/os75/oc2009_215_57600.raw /home/data/oc454_2/raw/os75/oc2009_215_64800.raw /home/data/oc454_2/raw/os75/oc2009_215_72000.raw /home/data/oc454_2/raw/os75/oc2009_215_79200.raw /home/data/oc454_2/raw/os75/oc2009_216_00000.raw /home/data/oc454_2/raw/os75/oc2009_216_07200.raw /home/data/oc454_2/raw/os75/oc2009_216_14400.raw /home/data/oc454_2/raw/os75/oc2009_216_21600.raw /home/data/oc454_2/raw/os75/oc2009_216_28800.raw 2009-08-05 09:05:27,169 INFO quick_run Wed Aug 5 09:05:27 2009 2009-08-05 09:05:27,169 INFO quick_run about to load uhdas files 2009-08-05 09:05:27,169 INFO quick_run /home/data/oc454_2/raw/os75/oc2009_208_11088.raw /home/data/oc454_2/raw/os75/oc2009_208_14400.raw /home/data/oc454_2/raw/os75/oc2009_208_21600.raw /home/data/oc454_2/raw/os75/oc2009_208_28800.raw /home/data/oc454_2/raw/os75/oc2009_208_36000.raw /home/data/oc454_2/raw/os75/oc2009_208_43200.raw /home/data/oc454_2/raw/os75/oc2009_208_50400.raw /home/data/oc454_2/raw/os75/oc2009_208_57600.raw /home/data/oc454_2/raw/os75/oc2009_208_64800.raw /home/data/oc454_2/raw/os75/oc2009_208_72000.raw /home/data/oc454_2/raw/os75/oc2009_208_79200.raw /home/data/oc454_2/raw/os75/oc2009_209_00000.raw /home/data/oc454_2/raw/os75/oc2009_209_07200.raw /home/data/oc454_2/raw/os75/oc2009_209_14400.raw /home/data/oc454_2/raw/os75/oc2009_209_21600.raw /home/data/oc454_2/raw/os75/oc2009_209_28800.raw /home/data/oc454_2/raw/os75/oc2009_209_36000.raw /home/data/oc454_2/raw/os75/oc2009_209_43200.raw /home/data/oc454_2/raw/os75/oc2009_209_50400.raw /home/data/oc454_2/raw/os75/oc2009_209_57600.raw /home/data/oc454_2/raw/os75/oc2009_209_64800.raw /home/data/oc454_2/raw/os75/oc2009_209_72000.raw /home/data/oc454_2/raw/os75/oc2009_209_79200.raw /home/data/oc454_2/raw/os75/oc2009_210_00000.raw /home/data/oc454_2/raw/os75/oc2009_210_07200.raw /home/data/oc454_2/raw/os75/oc2009_210_14400.raw /home/data/oc454_2/raw/os75/oc2009_210_21600.raw /home/data/oc454_2/raw/os75/oc2009_210_28800.raw /home/data/oc454_2/raw/os75/oc2009_210_36000.raw /home/data/oc454_2/raw/os75/oc2009_210_43200.raw /home/data/oc454_2/raw/os75/oc2009_210_50400.raw /home/data/oc454_2/raw/os75/oc2009_210_57600.raw /home/data/oc454_2/raw/os75/oc2009_210_64800.raw /home/data/oc454_2/raw/os75/oc2009_210_72000.raw /home/data/oc454_2/raw/os75/oc2009_210_79200.raw /home/data/oc454_2/raw/os75/oc2009_211_00000.raw /home/data/oc454_2/raw/os75/oc2009_211_07200.raw /home/data/oc454_2/raw/os75/oc2009_211_14400.raw /home/data/oc454_2/raw/os75/oc2009_211_21600.raw /home/data/oc454_2/raw/os75/oc2009_211_28800.raw /home/data/oc454_2/raw/os75/oc2009_211_36000.raw /home/data/oc454_2/raw/os75/oc2009_211_43200.raw /home/data/oc454_2/raw/os75/oc2009_211_50400.raw /home/data/oc454_2/raw/os75/oc2009_211_57600.raw /home/data/oc454_2/raw/os75/oc2009_211_64800.raw /home/data/oc454_2/raw/os75/oc2009_211_72000.raw /home/data/oc454_2/raw/os75/oc2009_211_79200.raw /home/data/oc454_2/raw/os75/oc2009_212_00000.raw /home/data/oc454_2/raw/os75/oc2009_212_07200.raw /home/data/oc454_2/raw/os75/oc2009_212_14400.raw /home/data/oc454_2/raw/os75/oc2009_212_21600.raw /home/data/oc454_2/raw/os75/oc2009_212_28800.raw /home/data/oc454_2/raw/os75/oc2009_212_36000.raw /home/data/oc454_2/raw/os75/oc2009_212_43200.raw /home/data/oc454_2/raw/os75/oc2009_212_50400.raw /home/data/oc454_2/raw/os75/oc2009_212_57600.raw /home/data/oc454_2/raw/os75/oc2009_212_64800.raw /home/data/oc454_2/raw/os75/oc2009_212_72000.raw /home/data/oc454_2/raw/os75/oc2009_212_79200.raw /home/data/oc454_2/raw/os75/oc2009_213_00000.raw /home/data/oc454_2/raw/os75/oc2009_213_07200.raw /home/data/oc454_2/raw/os75/oc2009_213_14400.raw /home/data/oc454_2/raw/os75/oc2009_213_21600.raw /home/data/oc454_2/raw/os75/oc2009_213_28800.raw /home/data/oc454_2/raw/os75/oc2009_213_34521.raw /home/data/oc454_2/raw/os75/oc2009_213_36000.raw /home/data/oc454_2/raw/os75/oc2009_213_43200.raw /home/data/oc454_2/raw/os75/oc2009_213_50400.raw /home/data/oc454_2/raw/os75/oc2009_213_57600.raw /home/data/oc454_2/raw/os75/oc2009_213_64800.raw /home/data/oc454_2/raw/os75/oc2009_213_72000.raw /home/data/oc454_2/raw/os75/oc2009_213_79200.raw /home/data/oc454_2/raw/os75/oc2009_214_00000.raw /home/data/oc454_2/raw/os75/oc2009_214_07200.raw /home/data/oc454_2/raw/os75/oc2009_214_14400.raw /home/data/oc454_2/raw/os75/oc2009_214_21600.raw /home/data/oc454_2/raw/os75/oc2009_214_28800.raw /home/data/oc454_2/raw/os75/oc2009_214_36000.raw /home/data/oc454_2/raw/os75/oc2009_214_43200.raw /home/data/oc454_2/raw/os75/oc2009_214_50400.raw /home/data/oc454_2/raw/os75/oc2009_214_57600.raw /home/data/oc454_2/raw/os75/oc2009_214_64800.raw /home/data/oc454_2/raw/os75/oc2009_214_72000.raw /home/data/oc454_2/raw/os75/oc2009_214_79200.raw /home/data/oc454_2/raw/os75/oc2009_215_00000.raw /home/data/oc454_2/raw/os75/oc2009_215_07200.raw /home/data/oc454_2/raw/os75/oc2009_215_14400.raw /home/data/oc454_2/raw/os75/oc2009_215_21600.raw /home/data/oc454_2/raw/os75/oc2009_215_28800.raw /home/data/oc454_2/raw/os75/oc2009_215_36000.raw /home/data/oc454_2/raw/os75/oc2009_215_43200.raw /home/data/oc454_2/raw/os75/oc2009_215_50400.raw /home/data/oc454_2/raw/os75/oc2009_215_57600.raw /home/data/oc454_2/raw/os75/oc2009_215_64800.raw /home/data/oc454_2/raw/os75/oc2009_215_72000.raw /home/data/oc454_2/raw/os75/oc2009_215_79200.raw /home/data/oc454_2/raw/os75/oc2009_216_00000.raw /home/data/oc454_2/raw/os75/oc2009_216_07200.raw /home/data/oc454_2/raw/os75/oc2009_216_14400.raw /home/data/oc454_2/raw/os75/oc2009_216_21600.raw /home/data/oc454_2/raw/os75/oc2009_216_28800.raw 2009-08-05 09:05:27,169 DEBUG quick_setup load/ldcodas.tmp exists 2009-08-05 09:05:27,170 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,170 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/load 2009-08-05 09:05:27,170 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,170 DEBUG quick_subs in /home/data/oc454_2/proc/os75nb/load 2009-08-05 09:05:27,171 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016'] 2009-08-05 09:05:27,172 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017'] 2009-08-05 09:05:27,173 DEBUG quick_subs starttime is 2009/08/04 22:45:00 2009-08-05 09:05:27,173 DEBUG quick_subs RESETTING thisload_time_range 2009-08-05 09:05:27,173 DEBUG quick_subs time range of data to be loaded: 2009/08/04 22:45:00 to 2009/08/05 09:02:20 2009-08-05 09:05:27,174 DEBUG quick_subs data startdd 215.947917 data enddd 216.376620 2009-08-05 09:05:27,174 DEBUG quick_subs about to load from these cmd files ['ens_blk017.cmd'] 2009-08-05 09:05:27,174 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_oc DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk017.cmd 2009-08-05 09:05:27,174 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-08-05 09:05:27,221 DEBUG quick_subs removing a_ocdir.blk 2009-08-05 09:05:27,222 DEBUG quick_subs about to run mkblkdir 2009-08-05 09:05:27,222 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-05 09:05:27,222 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-05 09:05:27,233 DEBUG quick_subs database passes. 2009-08-05 09:05:27,233 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2009-08-05 09:05:27,233 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,234 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,234 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,234 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,235 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,235 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/05 09:02:05 2009-08-05 09:05:27,235 DEBUG quick_subs dd0: 208.131875 dd1: 216.376447 2009-08-05 09:05:27,236 DEBUG quick_subs writing time range from a_oc.lst to a_oc.tr 2009-08-05 09:05:27,236 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,236 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,237 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,237 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-05 09:05:27,237 DEBUG quick_subs extracting time range 2009-08-05 09:05:27,238 DEBUG quick_subs start_end_time 2009/07/28 03:09:54 to 2009/08/05 09:02:05 2009-08-05 09:05:27,238 DEBUG quick_subs dd0: 208.131875 dd1: 216.376447 2009-08-05 09:05:27,238 DEBUG quick_adcp loaded_time_range is 2009/07/28 03:09:54 to 2009/08/05 09:02:05 2009-08-05 09:05:27,239 DEBUG quick_adcp (208.131875 to 216.376447) 2009-08-05 09:05:27,239 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,239 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/adcpdb 2009-08-05 09:05:27,239 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,240 DEBUG quick_subs dbname: a_oc output: a_oc.cnh time_ranges: all 2009-08-05 09:05:27,240 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-08-05 09:05:27,264 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-08-05 09:05:27,264 DEBUG quick_run executing commands from /home/data/oc454_2/proc/os75nb/edit 2009-08-05 09:05:27,264 DEBUG quick_run setup.m exists. not replacing 2009-08-05 09:05:27,264 DEBUG quick_run asetup.m exists. not replacing 2009-08-05 09:05:27,265 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-08-05 09:05:27,265 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-08-05 09:05:27,265 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,265 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/edit 2009-08-05 09:05:27,266 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,266 DEBUG quick_subs dbname: ../adcpdb/a_oc pg_min: 50 set_range_bit time_ranges: all 2009-08-05 09:05:27,266 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-08-05 09:05:27,318 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-08-05 09:05:27,318 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,318 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:27,319 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,322 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-08-05 09:05:27,323 DEBUG quick_run hcorr_inst is ashtech 2009-08-05 09:05:27,323 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-08-05 09:05:27,323 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,323 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/rotate 2009-08-05 09:05:27,324 DEBUG quick_setup running python command "method" 2009-08-05 09:05:27,324 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-08-05 09:05:27,324 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-08-05 09:05:27,366 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:27,366 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/rotate 2009-08-05 09:05:27,366 DEBUG quick_setup running python command "method" 2009-08-05 09:05:28,082 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'oc454_2'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'ashtech',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-08-05 09:05:30,329 DEBUG quick_run ------------ step 7: rotate ------------- 2009-08-05 09:05:30,330 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:30,330 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/rotate 2009-08-05 09:05:30,330 DEBUG quick_setup running python command "method" 2009-08-05 09:05:30,372 DEBUG quick_subs last rotated time from log file: 2009/08/05 08:32:20 2009-08-05 09:05:30,372 DEBUG quick_subs time range of currently loaded data: 2009/07/28 03:09:54 to 2009/08/05 09:02:05 2009-08-05 09:05:30,372 DEBUG quick_subs (208.131875 to 216.376447) 2009-08-05 09:05:30,374 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-08-05 09:05:30,374 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:30,374 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/rotate 2009-08-05 09:05:30,375 DEBUG quick_setup running python command "method" 2009-08-05 09:05:30,375 DEBUG quick_subs DB_NAME: ../../adcpdb/a_oc LOG_FILE: rotate.log TIME_RANGE: 2009/08/04 22:45:00 to 2009/08/05 09:02:20 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-08-05 09:05:30,375 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-08-05 09:05:30,383 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-08-05 09:05:30,383 DEBUG quick_setup nav/as_nav.tmp exists 2009-08-05 09:05:30,383 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:30,384 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:30,384 DEBUG quick_setup running python command "method" 2009-08-05 09:05:30,384 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/28 03:09:54 to 2009/08/05 09:02:05 /* the whole time range */ 2009-08-05 09:05:30,385 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-08-05 09:05:30,456 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-08-05 09:05:30,457 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:30,457 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:30,457 DEBUG quick_setup running python command "method" 2009-08-05 09:05:30,457 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-08-05 09:05:30,458 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-08-05 09:05:30,513 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-08-05 09:05:30,514 DEBUG quick_setup nav/smoothr.tmp exists 2009-08-05 09:05:30,514 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:30,514 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:30,515 DEBUG quick_setup running python command "method" 2009-08-05 09:05:30,515 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-08-05 09:05:30,515 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-08-05 09:05:30,770 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:30,771 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:30,771 DEBUG quick_setup running python command "method" 2009-08-05 09:05:30,771 DEBUG call_matlab --> clear all 2009-08-05 09:05:30,813 DEBUG call_matlab <-- >> 2009-08-05 09:05:30,813 DEBUG call_matlab --> close all 2009-08-05 09:05:30,916 DEBUG call_matlab <-- >> 2009-08-05 09:05:30,917 DEBUG call_matlab --> cd /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:30,920 DEBUG call_matlab <-- >> 2009-08-05 09:05:30,920 DEBUG call_matlab --> refsm 2009-08-05 09:05:32,500 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_oc opened Searching CODAS database ==> ../adcpdb/a_oc for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 2365 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-08-05 09:05:32,501 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-08-05 09:05:32,501 DEBUG quick_setup nav/putnav.tmp exists 2009-08-05 09:05:32,501 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:32,501 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:32,502 DEBUG quick_setup running python command "method" 2009-08-05 09:05:32,502 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-08-05 09:05:32,502 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-08-05 09:05:32,624 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-08-05 09:05:32,624 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:32,625 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:32,625 DEBUG quick_setup running python command "method" 2009-08-05 09:05:32,626 DEBUG quick_subs Created callrtmp.m 2009-08-05 09:05:32,627 DEBUG call_matlab --> clear all 2009-08-05 09:05:32,645 DEBUG call_matlab <-- >> 2009-08-05 09:05:32,646 DEBUG call_matlab --> close all 2009-08-05 09:05:32,773 DEBUG call_matlab <-- >> 2009-08-05 09:05:32,773 DEBUG call_matlab --> cd /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:32,786 DEBUG call_matlab <-- >> 2009-08-05 09:05:32,786 DEBUG call_matlab --> callrtmp_tmp 2009-08-05 09:05:35,125 DEBUG call_matlab <-- cruise = oc454_2 cruise = oc454_2 cruise = oc454_2 cruise = oc454_2 cruise = oc454_2 >> 2009-08-05 09:05:35,172 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-08-05 09:05:35,172 DEBUG quick_run find profile flags ------------ *** ------------- 2009-08-05 09:05:35,172 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:35,172 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/edit 2009-08-05 09:05:35,173 DEBUG quick_setup running python command "method" 2009-08-05 09:05:37,242 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-08-05 09:05:37,242 DEBUG quick_run starting in: /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:37,242 DEBUG quick_run executing commands from: edit 2009-08-05 09:05:37,246 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_oc abottom_tmp.asc 2009-08-05 09:05:37,253 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_oc abadprf_tmp.asc 2009-08-05 09:05:37,259 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_oc abadbin_tmp.asc 2009-08-05 09:05:37,271 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_oc 30 2009-08-05 09:05:37,279 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-08-05 09:05:37,335 DEBUG quick_run changing directories back to /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:37,336 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-08-05 09:05:37,336 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-08-05 09:05:37,336 DEBUG quick_setup nav/as_nav.tmp exists 2009-08-05 09:05:37,336 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:37,337 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:37,337 DEBUG quick_setup running python command "method" 2009-08-05 09:05:37,337 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/28 03:09:54 to 2009/08/05 09:02:05 /* the whole time range */ 2009-08-05 09:05:37,338 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-08-05 09:05:37,411 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-08-05 09:05:37,411 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:37,412 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:37,412 DEBUG quick_setup running python command "method" 2009-08-05 09:05:37,412 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.nav fix_file: a_oc.gps output: a_oc.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-08-05 09:05:37,413 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-08-05 09:05:37,464 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-08-05 09:05:37,464 DEBUG quick_setup nav/smoothr.tmp exists 2009-08-05 09:05:37,464 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:37,465 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:37,465 DEBUG quick_setup running python command "method" 2009-08-05 09:05:37,465 DEBUG quick_subs reference_file: a_oc.nav refabs_output: a_oc.ref output: a_oc.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-08-05 09:05:37,466 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-08-05 09:05:37,788 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:37,789 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:37,789 DEBUG quick_setup running python command "method" 2009-08-05 09:05:37,790 DEBUG call_matlab --> clear all 2009-08-05 09:05:37,823 DEBUG call_matlab <-- >> 2009-08-05 09:05:37,823 DEBUG call_matlab --> close all 2009-08-05 09:05:37,969 DEBUG call_matlab <-- >> 2009-08-05 09:05:37,970 DEBUG call_matlab --> cd /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:37,978 DEBUG call_matlab <-- >> 2009-08-05 09:05:37,978 DEBUG call_matlab --> refsm 2009-08-05 09:05:39,803 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_oc opened Searching CODAS database ==> ../adcpdb/a_oc for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 2365 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-08-05 09:05:40,088 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-08-05 09:05:40,088 DEBUG quick_setup nav/putnav.tmp exists 2009-08-05 09:05:40,088 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:40,089 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:40,089 DEBUG quick_setup running python command "method" 2009-08-05 09:05:40,089 DEBUG quick_subs dbname: ../adcpdb/a_oc position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-08-05 09:05:40,090 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-08-05 09:05:40,496 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-08-05 09:05:40,496 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:40,497 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:40,497 DEBUG quick_setup running python command "method" 2009-08-05 09:05:40,498 DEBUG quick_subs Created callrtmp.m 2009-08-05 09:05:40,498 DEBUG call_matlab --> clear all 2009-08-05 09:05:40,509 DEBUG call_matlab <-- >> 2009-08-05 09:05:40,509 DEBUG call_matlab --> close all 2009-08-05 09:05:40,585 DEBUG call_matlab <-- >> 2009-08-05 09:05:40,586 DEBUG call_matlab --> cd /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:40,589 DEBUG call_matlab <-- >> 2009-08-05 09:05:40,589 DEBUG call_matlab --> callrtmp_tmp 2009-08-05 09:05:42,629 DEBUG call_matlab <-- cruise = oc454_2 cruise = oc454_2 cruise = oc454_2 cruise = oc454_2 cruise = oc454_2 >> 2009-08-05 09:05:42,629 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-08-05 09:05:42,630 DEBUG quick_setup edit/lst_temp.tmp exists 2009-08-05 09:05:42,630 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:42,630 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/edit 2009-08-05 09:05:42,630 DEBUG quick_setup running python command "method" 2009-08-05 09:05:42,631 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc.tem step_size= 1 year_base= 2009 time_ranges: all 2009-08-05 09:05:42,631 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-08-05 09:05:42,676 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:42,677 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/edit 2009-08-05 09:05:42,677 DEBUG quick_setup running python command "method" 2009-08-05 09:05:44,193 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-08-05 09:05:44,929 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-08-05 09:05:44,930 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:44,930 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/botmtrk 2009-08-05 09:05:44,930 DEBUG quick_setup running python command "method" 2009-08-05 09:05:44,930 DEBUG quick_subs dbname: ../../adcpdb/a_oc output: a_oc.btm step_size= 1 year_base= 2009 time_ranges: 2009/07/28 03:09:54 to 2009/08/05 09:02:05 /* whole time range */ 2009-08-05 09:05:44,931 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-08-05 09:05:44,956 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-08-05 09:05:44,956 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:44,957 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/botmtrk 2009-08-05 09:05:44,957 DEBUG quick_setup running python command "method" 2009-08-05 09:05:44,957 DEBUG quick_subs fix_file_type: simple reference_file: a_oc.btm fix_file: ../../nav/a_oc.gps output: a_oc.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-08-05 09:05:44,958 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-08-05 09:05:44,964 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:44,964 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/botmtrk 2009-08-05 09:05:44,965 DEBUG quick_setup running python command "method" 2009-08-05 09:05:44,965 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_oc.ref','a_oc.btm',... 'ADCP oc454_2 step size 1 ', 1); 2009-08-05 09:05:45,165 DEBUG quick_setup nav/as_nav.tmp exists 2009-08-05 09:05:45,166 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:45,166 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/nav 2009-08-05 09:05:45,166 DEBUG quick_setup running python command "method" 2009-08-05 09:05:45,167 DEBUG quick_subs dbname: ../adcpdb/a_oc output: a_oc step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/28 03:09:54 to 2009/08/05 09:02:05 /* the whole time range */ 2009-08-05 09:05:45,167 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-08-05 09:05:45,240 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-08-05 09:05:45,240 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:45,240 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/watertrk 2009-08-05 09:05:45,241 DEBUG quick_setup running python command "method" 2009-08-05 09:05:45,241 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_oc.gps reference_file: ../../nav/a_oc.nav output_file: a_oc_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-08-05 09:05:45,241 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-08-05 09:05:45,265 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:45,265 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/cal/watertrk 2009-08-05 09:05:45,265 DEBUG quick_setup running python command "method" 2009-08-05 09:05:45,266 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_oc_7.cal', 'ADCP oc454_2 7ens') 2009-08-05 09:05:45,266 DEBUG call_matlab --> clear all 2009-08-05 09:05:45,273 DEBUG call_matlab <-- >> 2009-08-05 09:05:45,273 DEBUG call_matlab --> close all 2009-08-05 09:05:45,345 DEBUG call_matlab <-- >> 2009-08-05 09:05:45,346 DEBUG call_matlab --> cd /home/data/oc454_2/proc/os75nb/cal/watertrk 2009-08-05 09:05:45,349 DEBUG call_matlab <-- >> 2009-08-05 09:05:45,349 DEBUG call_matlab --> calladcpcal_tmp 2009-08-05 09:05:46,866 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [22x11 double] igood: [15x1 double] >> 2009-08-05 09:05:46,866 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-08-05 09:05:46,867 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:46,867 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/vector 2009-08-05 09:05:46,867 DEBUG quick_setup running python command "method" 2009-08-05 09:05:46,867 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2009-08-05 09:05:46,875 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:46,876 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/vector 2009-08-05 09:05:46,876 DEBUG quick_setup running python command "method" 2009-08-05 09:05:46,876 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-08-05 09:05:46,993 DEBUG quick_asect done making vector matfiles 2009-08-05 09:05:46,994 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:46,994 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/contour 2009-08-05 09:05:46,994 DEBUG quick_setup running python command "method" 2009-08-05 09:05:46,995 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_oc.tmp 2009-08-05 09:05:47,004 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:47,005 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/contour 2009-08-05 09:05:47,005 DEBUG quick_setup running python command "method" 2009-08-05 09:05:47,006 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-08-05 09:05:47,164 DEBUG quick_setup starting in /home/data/oc454_2/proc/os75nb 2009-08-05 09:05:47,164 DEBUG quick_setup executing commands from /home/data/oc454_2/proc/os75nb/contour 2009-08-05 09:05:47,164 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_oc 2009-08-05 09:05:47,570 DEBUG quick_asect done running getmat with "allbins" 2009-08-05 09:05:47,571 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2009-08-05 09:05:47,572 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2009-08-05 09:05:47,572 DEBUG root matfile is contour/contour_uv.mat 2009-08-05 09:05:47,577 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2009-08-05 09:05:47,578 DEBUG root matfile is vector/vector_uv.mat 2009-08-05 09:05:47,579 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2009-08-05 09:05:47,579 DEBUG root matfile is contour/contour_xy.mat 2009-08-05 09:05:47,580 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2009-08-05 09:05:47,580 DEBUG root matfile is vector/vector_xy.mat 2009-08-05 09:05:47,580 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2009-08-05 09:05:47,581 DEBUG root about to copy file edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2009-08-05 09:05:47,582 INFO root copying edit/a_oc.tem to /home/adcp/www/data/os75nb_temp.asc 2009-08-05 09:05:47,582 INFO root Ending quick_adcp.py 2009-08-05 09:05:47,708 DEBUG quick_setup killed matlab engine