2012-01-15 22:25:01,337 DEBUG root about to write control file parameters to --yearbase 2012 --cruisename MGL1202 --configtype python --sonar os75nb --dbname a_mgl --datatype uhdas --cfgpath /home/data/MGL1202/proc/os75nb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 1000 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2012-01-15 22:25:01,338 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb 2012-01-15 22:25:01,339 DEBUG quick_adcp progdir = /home/currents/programs 2012-01-15 22:25:01,339 DEBUG quick_adcp binos = lnx64 2012-01-15 22:25:01,341 DEBUG quick_setup found cruise_info.hcorr (seapath, sea, 0) 2012-01-15 22:25:01,342 INFO quick_adcp importing numpy 2012-01-15 22:25:01,360 INFO quick_adcp importing matplotlib 2012-01-15 22:25:01,431 DEBUG quick_mpl in Q_mpl 2012-01-15 22:25:01,431 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg clearflags ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_guess_xducerxy run_guess_xducerxy_npy run_loaddb run_loadlta_npy run_loadping run_lstconfig run_lsthdg run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd_lta run_pybincmd_uhdas run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanlta_npy run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy run_xducerxy_npy scanping setflags smoothr timegrid timslip ubprint write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2012-01-15 22:25:01,431 INFO quick_adcp cwd is /data/MGL1202/proc/os75nb about to run these steps: - editsetup - scandata - avg_and_load - setflags - getnav - get_headcorr - rotate - adcpsect - refabs - smoothnav - putnav - refplots - find_pflags - apply_edit - navsteps - lst_temp - calib - matfiles - find_pflags 2012-01-15 22:25:01,431 INFO quick_adcp original fix file is a_mgl.gps 2012-01-15 22:25:01,431 INFO quick_adcp smoothed nav file is a_mgl_refsm.asc 2012-01-15 22:25:01,431 DEBUG quick_asect extracting matlab files for os75, nb pings 2012-01-15 22:25:01,436 DEBUG quick_setup data directory: /home/data/MGL1202/raw/os75 2012-01-15 22:25:01,437 INFO quick_setup found 75 files using wildcard expansion relative to scan directory wildcard string was: "/home/data/MGL1202/raw/os75/*.raw" 2012-01-15 22:25:01,438 DEBUG quick_setup found 75 files from original filelist 2012-01-15 22:25:01,438 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MGL1202/raw/os75/mgl2012_008_70460.raw ... 2012-01-15 22:25:01,439 DEBUG quick_adcp Sun Jan 15 22:25:01 2012 running quick_adcp.py as follows: --cntfile /home/data/MGL1202/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_mgl dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 30 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2012 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True badbeam None beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx64 binos lnx64 btrk_step 1 cfgpath /home/data/MGL1202/proc/os75nb/config cntfile /home/data/MGL1202/proc/os75nb/os75nb_qpy.cnt commands None configtype python cruisename MGL1202 data_def vmadcp.def datadir /home/data/MGL1202/raw/os75 datafile_glob *.raw datatype uhdas dbname a_mgl dday_bailout None debug False diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth None editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/MGL1202/raw/os75/mgl2012_008_70460.raw', '/home/data/MGL1202/raw/os75/mgl2012_008_72000.raw', '/home/data/MGL1202/raw/os75/mgl2012_008_79200.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_00000.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_07200.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_14400.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_21600.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_28800.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_36000.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_43200.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_50400.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_57600.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_64800.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_72000.raw', '/home/data/MGL1202/raw/os75/mgl2012_009_79200.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_00000.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_07200.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_14400.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_21600.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_28800.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_36000.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_43200.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_50400.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_57600.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_64800.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_72000.raw', '/home/data/MGL1202/raw/os75/mgl2012_010_79200.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_00000.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_07200.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_14400.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_21600.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_28800.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_36000.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_43200.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_50400.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_57600.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_64800.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_72000.raw', '/home/data/MGL1202/raw/os75/mgl2012_011_79200.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_00000.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_07200.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_14400.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_21600.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_28800.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_36000.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_43200.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_50400.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_57600.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_64800.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_72000.raw', '/home/data/MGL1202/raw/os75/mgl2012_012_79200.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_00000.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_07200.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_14400.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_21600.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_28800.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_36000.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_43200.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_50400.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_57600.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_64800.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_72000.raw', '/home/data/MGL1202/raw/os75/mgl2012_013_79200.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_00000.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_07200.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_14400.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_21600.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_28800.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_36000.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_43200.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_50400.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_57600.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_64800.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_72000.raw', '/home/data/MGL1202/raw/os75/mgl2012_014_79200.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 30 fixfile a_mgl.gps frequency 75 gbin_style python gbindirbase /home/data/MGL1202/gbin hcorr_inst seapath help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 300 max_search_depth 1000 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 overview False pgmin 50 ping_headcorr False pingtype nb post_headcorr None printformats png proc_engine python proc_yearbase 2012 progdir /home/currents/programs py_gbindirbase /home/data/MGL1202/gbin rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_mgl_refsm.asc sonar os75nb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx None xducer_dy None yearbase 2012 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2012-01-15 22:25:01,439 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,439 INFO quick_adcp step 1: set up editing files 2012-01-15 22:25:01,439 DEBUG quick_run executing commands from /data/MGL1202/proc/os75nb/edit 2012-01-15 22:25:01,439 DEBUG quick_run setup.m exists. not replacing 2012-01-15 22:25:01,439 DEBUG quick_run asetup.m exists. not replacing 2012-01-15 22:25:01,439 DEBUG quick_run aflagit_setup.m exists. not replacing 2012-01-15 22:25:01,439 DEBUG quick_subs dbname: ../adcpdb/a_mgl pg_min: 50 clear_range /* reset range */ clear_all_bits /* clear flags except pg_min*/ clear_bad_profile /* reset access vars lgb */ time_ranges: all 2012-01-15 22:25:01,440 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,440 INFO quick_adcp step 2: scan files for time range 2012-01-15 22:25:01,440 INFO quick_adcp about to run numpy scan, requiring python gbins 2012-01-15 22:25:01,440 DEBUG quick_npy Starting: scanping 2012-01-15 22:25:01,541 DEBUG quick_npy Ending: scanping 2012-01-15 22:25:01,542 DEBUG quick_subs start_end_time 2012/01/12 18:00:04 to 2012/01/12 11:59:58 2012-01-15 22:25:01,543 DEBUG quick_subs dd0: 11.750046 dd1: 11.499977 2012-01-15 22:25:01,543 INFO quick_adcp in quick_adcp.py: after scan; look for database times in /data/MGL1202/proc/os75nb 2012-01-15 22:25:01,543 INFO quick_adcp looking for database with adcpdb/a_mgl*.blk 2012-01-15 22:25:01,543 INFO quick_adcp database found: listing blocks 2012-01-15 22:25:01,544 DEBUG quick_subs removing a_mgldir.blk 2012-01-15 22:25:01,544 DEBUG quick_subs about to run mkblkdir 2012-01-15 22:25:01,544 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-01-15 22:25:01,544 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-01-15 22:25:01,553 DEBUG quick_subs database passes. 2012-01-15 22:25:01,553 DEBUG quick_subs start_end_time 2012/01/09 19:39:24 to 2012/01/15 22:09:22 2012-01-15 22:25:01,553 DEBUG quick_subs dd0: 8.819028 dd1: 14.923171 2012-01-15 22:25:01,554 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2012-01-15 22:25:01,554 DEBUG quick_adcp origdb_time_range is 2012/01/09 19:39:24 to 2012/01/15 22:09:22 2012-01-15 22:25:01,554 DEBUG quick_adcp (8.819028 to 14.923171) 2012-01-15 22:25:01,554 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,554 INFO quick_adcp step 3: generate averaged data... 2012-01-15 22:25:01,554 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2012-01-15 22:25:01,555 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:01,555 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/load 2012-01-15 22:25:01,555 DEBUG quick_setup running python command "run_pingavg_npy" 2012-01-15 22:25:01,555 DEBUG quick_npy Starting: pingavg 2012-01-15 22:25:01,557 DEBUG quick_npy singleping editing parameters: 2012-01-15 22:25:01,557 DEBUG quick_npy bigtarget_mab_window : 11 2012-01-15 22:25:01,558 DEBUG quick_npy rl_endbin : 20 2012-01-15 22:25:01,558 DEBUG quick_npy max_search_depth : 1000 2012-01-15 22:25:01,558 DEBUG quick_npy cor_cutoff : 120 2012-01-15 22:25:01,558 DEBUG quick_npy ampfilt : 40 2012-01-15 22:25:01,558 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2012-01-15 22:25:01,558 DEBUG quick_npy rl_startbin : 2 2012-01-15 22:25:01,558 DEBUG quick_npy ecutoff : 1 2012-01-15 22:25:01,558 DEBUG quick_npy refavg_valcutoff : 1 2012-01-15 22:25:01,558 DEBUG quick_npy weakprof_percent : 30 2012-01-15 22:25:01,559 DEBUG quick_npy bigtarget_ampthresh : 55 2012-01-15 22:25:01,564 INFO pingavg Pingavg.run for time range 14.916688 to 14.933736 2012-01-15 22:25:01,594 DEBUG pingavg Chunk 1 of 1, 14.916688 to 14.933736 2012-01-15 22:25:01,595 DEBUG pingavg Nothing written 2012-01-15 22:25:01,595 DEBUG quick_npy wrote 0 averages 2012-01-15 22:25:01,595 DEBUG quick_npy Ending: pingavg 2012-01-15 22:25:01,595 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,595 INFO quick_adcp step 4: load averaged data (to database) 2012-01-15 22:25:01,596 DEBUG quick_subs in del_overlapping 2012-01-15 22:25:01,596 DEBUG quick_subs lastblock: 2012-01-15 22:25:01,596 DEBUG quick_subs 6 2012-01-15 22:25:01,596 DEBUG quick_subs lastcmd: 2012-01-15 22:25:01,596 DEBUG quick_subs 6 2012-01-15 22:25:01,596 DEBUG quick_subs delblks: 2012-01-15 22:25:01,597 DEBUG quick_subs [6] 2012-01-15 22:25:01,597 DEBUG quick_subs loadblks: 2012-01-15 22:25:01,597 DEBUG quick_subs [6] 2012-01-15 22:25:01,597 DEBUG quick_subs about to run mkblkdir 2012-01-15 22:25:01,597 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-01-15 22:25:01,598 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-01-15 22:25:01,606 DEBUG quick_subs database passes. 2012-01-15 22:25:01,607 DEBUG quick_subs start_end_time 2012/01/09 19:39:24 to 2012/01/15 00:34:21 2012-01-15 22:25:01,607 DEBUG quick_subs dd0: 8.819028 dd1: 14.023854 2012-01-15 22:25:01,607 DEBUG quick_run [6] 2012-01-15 22:25:01,607 DEBUG quick_run cmdlist 2012-01-15 22:25:01,607 DEBUG quick_run ['./ens_blk006.cmd'] 2012-01-15 22:25:01,611 INFO quick_run Warning: 1 files will be loaded; 6 already exist 2012-01-15 22:25:01,611 INFO quick_run Sun Jan 15 22:25:01 2012 2012-01-15 22:25:01,611 INFO quick_run about to load uhdas files 2012-01-15 22:25:01,611 INFO quick_run /home/data/MGL1202/raw/os75/mgl2012_008_70460.raw /home/data/MGL1202/raw/os75/mgl2012_008_72000.raw /home/data/MGL1202/raw/os75/mgl2012_008_79200.raw /home/data/MGL1202/raw/os75/mgl2012_009_00000.raw /home/data/MGL1202/raw/os75/mgl2012_009_07200.raw ... 2012-01-15 22:25:01,611 DEBUG quick_setup load/ldcodas.tmp exists 2012-01-15 22:25:01,611 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:01,612 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/load 2012-01-15 22:25:01,612 DEBUG quick_setup running python command "ldcodas" 2012-01-15 22:25:01,612 DEBUG quick_subs filling "thisload" timerange 2012-01-15 22:25:01,614 DEBUG quick_subs in ldcodas 2012-01-15 22:25:01,614 DEBUG quick_subs cmdlist: 2012-01-15 22:25:01,614 DEBUG quick_subs ['./ens_blk006.cmd'] 2012-01-15 22:25:01,615 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mgl DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2012 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk006.cmd 2012-01-15 22:25:01,615 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/ldcodas ldcodas.tmp 2012-01-15 22:25:01,657 DEBUG quick_subs removing a_mgldir.blk 2012-01-15 22:25:01,658 DEBUG quick_subs about to run mkblkdir 2012-01-15 22:25:01,658 DEBUG quick_subs database still exists; rerunning mkdirblk 2012-01-15 22:25:01,658 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2012-01-15 22:25:01,667 DEBUG quick_subs database passes. 2012-01-15 22:25:01,667 DEBUG quick_subs start_end_time 2012/01/09 19:39:24 to 2012/01/15 22:24:23 2012-01-15 22:25:01,667 DEBUG quick_subs dd0: 8.819028 dd1: 14.933600 2012-01-15 22:25:01,667 INFO quick_adcp loaded_time_range is 2012/01/09 19:39:24 to 2012/01/15 22:24:23 2012-01-15 22:25:01,668 INFO quick_adcp (8.819028 to 14.933600) 2012-01-15 22:25:01,668 INFO quick_adcp origdb_time_range is 2012/01/09 19:39:24 to 2012/01/15 22:09:22 2012-01-15 22:25:01,668 INFO quick_adcp (8.819028 to 14.923171) 2012-01-15 22:25:01,668 INFO quick_adcp thisload_time_range is 2012/01/15 00:39:23 to 2012/01/15 22:24:23 2012-01-15 22:25:01,668 INFO quick_adcp (14.027350 to 14.027350) 2012-01-15 22:25:01,669 INFO quick_adcp --------------------- 2012-01-15 22:25:01,669 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:01,669 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/adcpdb 2012-01-15 22:25:01,669 DEBUG quick_setup running python command "lst_conf" 2012-01-15 22:25:01,669 DEBUG quick_subs dbname: a_mgl output: a_mgl.cnh time_ranges: all 2012-01-15 22:25:01,669 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_conf lst_conf.tmp 2012-01-15 22:25:01,854 DEBUG quick_setup found (in edit/asetup.m): 2012-01-15 22:25:01,854 DEBUG quick_setup config.beamangle is 30 2012-01-15 22:25:01,854 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,855 INFO quick_adcp step 5: set up files for gautoedit.py 2012-01-15 22:25:01,855 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2012-01-15 22:25:01,855 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,855 INFO quick_adcp step 6: set up files for gautoedit.py 2012-01-15 22:25:01,855 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:01,855 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/edit 2012-01-15 22:25:01,855 DEBUG quick_setup running python command "setflags" 2012-01-15 22:25:01,856 DEBUG quick_subs dbname: ../adcpdb/a_mgl pg_min: 50 set_range_bit time_ranges: all 2012-01-15 22:25:01,856 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2012-01-15 22:25:01,872 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,872 INFO quick_adcp step 7: get navigation 2012-01-15 22:25:01,872 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:01,873 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:01,873 DEBUG quick_setup running python command "catnav" 2012-01-15 22:25:01,874 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2012-01-15 22:25:01,874 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:01,874 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/cal/rotate 2012-01-15 22:25:01,874 DEBUG quick_setup running python command "lst_hdg" 2012-01-15 22:25:01,874 DEBUG quick_subs dbname: ../../adcpdb/a_mgl output: scn.hdg step_size= 1 year_base= 2012 time_ranges: all 2012-01-15 22:25:01,875 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_hdg lst_hdg.tmp 2012-01-15 22:25:01,888 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:01,889 INFO quick_adcp step 8: get heading correction 2012-01-15 22:25:01,889 DEBUG quick_run hcorr_inst is seapath 2012-01-15 22:25:01,889 DEBUG quick_mpl Starting plot: hcorr 2012-01-15 22:25:01,912 DEBUG quick_mplplots found 6.114574 days of data 2012-01-15 22:25:01,913 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2012-01-15 22:25:01,913 DEBUG quick_mplplots printing 2 pages 2012-01-15 22:25:02,655 DEBUG quick_mpl Ending plot: hcorr 2012-01-15 22:25:02,656 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:02,656 INFO quick_adcp step 9: rotate velocities 2012-01-15 22:25:02,656 DEBUG quick_setup cal/rotate/norotate.tmp exists 2012-01-15 22:25:02,656 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:02,656 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/cal/rotate 2012-01-15 22:25:02,656 DEBUG quick_setup running python command "norotate" 2012-01-15 22:25:02,656 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. */ DB_NAME: ../../adcpdb/a_mgl LOG_FILE: rotate.log TIME_RANGE: 2012/01/09 19:39:24 to 2012/01/15 22:24:23 OPTION_LIST: water_and_bottom_track: year_base= 2012 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2012-01-15 22:25:02,657 DEBUG quick_setup about to run echo "writing dummy rotate file" 2012-01-15 22:25:02,660 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:02,660 INFO quick_adcp step 10: nav steps: run adcpsect 2012-01-15 22:25:02,661 DEBUG quick_setup nav/as_nav.tmp exists 2012-01-15 22:25:02,661 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:02,661 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:02,661 DEBUG quick_setup running python command "as_nav" 2012-01-15 22:25:02,661 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl step_size: 1 ndepth: 20 time_ranges: separate year_base= 2012 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/01/09 19:39:24 to 2012/01/15 22:24:23 /* the whole time range */ 2012-01-15 22:25:02,661 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-01-15 22:25:02,686 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:02,686 INFO quick_adcp step 11: nav steps: run refabs 2012-01-15 22:25:02,687 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:02,687 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:02,687 DEBUG quick_setup running python command "refabs" 2012-01-15 22:25:02,687 DEBUG quick_subs fix_file_type: simple reference_file: a_mgl.nav fix_file: a_mgl.gps output: a_mgl.ref year_base= 2012 ensemble_length= 300 gap_tolerance= 10 2012-01-15 22:25:02,687 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2012-01-15 22:25:02,707 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:02,708 INFO quick_adcp step 12: nav steps: run smoothr for plots 2012-01-15 22:25:02,708 DEBUG quick_setup nav/smoothr.tmp exists 2012-01-15 22:25:02,708 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:02,708 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:02,708 DEBUG quick_setup running python command "smoothr" 2012-01-15 22:25:02,708 DEBUG quick_subs reference_file: a_mgl.nav refabs_output: a_mgl.ref output: a_mgl.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-01-15 22:25:02,708 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2012-01-15 22:25:02,792 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:02,793 INFO quick_adcp step 13: nav steps: smooth navigation 2012-01-15 22:25:02,793 INFO quick_adcp about to run numpy refsm 2012-01-15 22:25:02,793 DEBUG quick_npy Starting: refsm 2012-01-15 22:25:02,848 DEBUG nav dtmin = -0.50 dtmax = 4.31 2012-01-15 22:25:02,922 DEBUG quick_npy Ending: refsm 2012-01-15 22:25:02,922 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:02,922 INFO quick_adcp step 14: nav steps: put smoothed nav into codasdb 2012-01-15 22:25:02,923 DEBUG quick_setup nav/putnav.tmp exists 2012-01-15 22:25:02,923 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:02,923 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:02,923 DEBUG quick_setup running python command "putnav" 2012-01-15 22:25:02,923 DEBUG quick_subs dbname: ../adcpdb/a_mgl position_file: a_mgl_refsm.asc year_base= 2012 tolerance= 5 navigation_sources: gps end 2012-01-15 22:25:02,923 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2012-01-15 22:25:02,951 INFO quick_adcp plotting navigation 2012-01-15 22:25:02,951 DEBUG quick_mpl Starting plot: nav 2012-01-15 22:25:03,301 DEBUG quick_mpl Ending plot: nav 2012-01-15 22:25:03,302 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:03,302 INFO quick_adcp step 15: nav steps: make reflayer plots 2012-01-15 22:25:03,302 DEBUG quick_mpl Starting plot: refl 2012-01-15 22:25:03,353 DEBUG quick_mplplots found 6.111081 days of data 2012-01-15 22:25:03,354 DEBUG quick_mplplots start day is 8.000000 2012-01-15 22:25:03,354 DEBUG quick_mplplots figures with 2.000000 days per page 2012-01-15 22:25:03,354 DEBUG quick_mplplots printing 4 pages 2012-01-15 22:25:03,354 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-01-15 22:25:04,049 DEBUG quick_mpl Ending plot: refl 2012-01-15 22:25:04,049 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:04,049 INFO quick_adcp step 16: find profile flags 2012-01-15 22:25:04,049 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:04,049 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/edit 2012-01-15 22:25:04,049 DEBUG quick_setup running python command "run_autoedit_npy" 2012-01-15 22:25:04,049 DEBUG quick_npy Starting: autoedit 2012-01-15 22:25:04,123 DEBUG pingedit wrote 2 bad bins to abadbin_tmp.asc 2012-01-15 22:25:04,145 DEBUG pingedit wrote 1 bad profiles to abadprf_tmp.asc 2012-01-15 22:25:04,146 DEBUG quick_npy Ending: autoedit 2012-01-15 22:25:04,146 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:04,146 INFO quick_adcp step 17: apply editing 2012-01-15 22:25:04,146 DEBUG quick_run starting in: /data/MGL1202/proc/os75nb 2012-01-15 22:25:04,146 DEBUG quick_run executing commands from: edit 2012-01-15 22:25:04,148 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/dbupdate ../adcpdb/a_mgl abadprf_tmp.asc 2012-01-15 22:25:04,152 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/badbin ../adcpdb/a_mgl abadbin_tmp.asc 2012-01-15 22:25:04,158 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/set_lgb ../adcpdb/a_mgl 30 2012-01-15 22:25:04,164 DEBUG quick_subs dbname: ../adcpdb/a_mgl pg_min: 50 set_range_bit time_ranges: all 2012-01-15 22:25:04,164 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2012-01-15 22:25:04,183 DEBUG quick_run changing directories back to /data/MGL1202/proc/os75nb 2012-01-15 22:25:04,183 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:04,183 INFO quick_adcp step 18: run nav steps 2012-01-15 22:25:04,184 DEBUG quick_setup nav/as_nav.tmp exists 2012-01-15 22:25:04,184 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:04,184 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:04,184 DEBUG quick_setup running python command "as_nav" 2012-01-15 22:25:04,184 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl step_size: 1 ndepth: 20 time_ranges: separate year_base= 2012 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/01/09 19:39:24 to 2012/01/15 22:24:23 /* the whole time range */ 2012-01-15 22:25:04,184 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-01-15 22:25:04,207 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:04,208 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:04,208 DEBUG quick_setup running python command "refabs" 2012-01-15 22:25:04,208 DEBUG quick_subs fix_file_type: simple reference_file: a_mgl.nav fix_file: a_mgl.gps output: a_mgl.ref year_base= 2012 ensemble_length= 300 gap_tolerance= 10 2012-01-15 22:25:04,208 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2012-01-15 22:25:04,232 DEBUG quick_setup nav/smoothr.tmp exists 2012-01-15 22:25:04,232 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:04,232 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:04,232 DEBUG quick_setup running python command "smoothr" 2012-01-15 22:25:04,232 DEBUG quick_subs reference_file: a_mgl.nav refabs_output: a_mgl.ref output: a_mgl.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2012-01-15 22:25:04,233 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2012-01-15 22:25:04,315 DEBUG quick_npy Starting: refsm 2012-01-15 22:25:04,372 DEBUG nav dtmin = -0.50 dtmax = 4.31 2012-01-15 22:25:04,445 DEBUG quick_npy Ending: refsm 2012-01-15 22:25:04,445 DEBUG quick_setup nav/putnav.tmp exists 2012-01-15 22:25:04,446 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:04,446 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:04,446 DEBUG quick_setup running python command "putnav" 2012-01-15 22:25:04,446 DEBUG quick_subs dbname: ../adcpdb/a_mgl position_file: a_mgl_refsm.asc year_base= 2012 tolerance= 5 navigation_sources: gps end 2012-01-15 22:25:04,446 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2012-01-15 22:25:04,473 DEBUG quick_mpl Starting plot: nav 2012-01-15 22:25:04,823 DEBUG quick_mpl Ending plot: nav 2012-01-15 22:25:04,823 DEBUG quick_mpl Starting plot: refl 2012-01-15 22:25:04,875 DEBUG quick_mplplots found 6.111081 days of data 2012-01-15 22:25:04,876 DEBUG quick_mplplots start day is 8.000000 2012-01-15 22:25:04,876 DEBUG quick_mplplots figures with 2.000000 days per page 2012-01-15 22:25:04,876 DEBUG quick_mplplots printing 4 pages 2012-01-15 22:25:04,876 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2012-01-15 22:25:05,579 DEBUG quick_mpl Ending plot: refl 2012-01-15 22:25:05,579 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:05,579 INFO quick_adcp step 19: plot temperature 2012-01-15 22:25:05,579 DEBUG quick_setup edit/lst_temp.tmp exists 2012-01-15 22:25:05,579 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:05,579 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/edit 2012-01-15 22:25:05,580 DEBUG quick_setup running python command "lst_temp" 2012-01-15 22:25:05,580 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl.tem step_size= 1 year_base= 2012 time_ranges: all 2012-01-15 22:25:05,580 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_temp lst_temp.tmp 2012-01-15 22:25:05,596 DEBUG quick_mpl Starting plot: temp 2012-01-15 22:25:05,621 DEBUG quick_mplplots plotting 1762 points 2012-01-15 22:25:05,893 DEBUG quick_mpl Ending plot: temp 2012-01-15 22:25:05,893 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:05,894 INFO quick_adcp step 20: run calibration steps 2012-01-15 22:25:05,894 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2012-01-15 22:25:05,894 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:05,894 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/cal/botmtrk 2012-01-15 22:25:05,894 DEBUG quick_setup running python command "lst_btrk" 2012-01-15 22:25:05,894 DEBUG quick_subs dbname: ../../adcpdb/a_mgl output: a_mgl.btm step_size= 1 year_base= 2012 time_ranges: 2012/01/09 19:39:24 to 2012/01/15 22:24:23 /* whole time range */ 2012-01-15 22:25:05,894 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_btrk lst_btrk.tmp 2012-01-15 22:25:05,903 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2012-01-15 22:25:05,903 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:05,903 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/cal/botmtrk 2012-01-15 22:25:05,903 DEBUG quick_setup running python command "refabsbt" 2012-01-15 22:25:05,903 DEBUG quick_subs fix_file_type: simple reference_file: a_mgl.btm fix_file: ../../nav/a_mgl.gps output: a_mgl.ref year_base= 2012 ensemble_length= 300 gap_tolerance= 60 2012-01-15 22:25:05,903 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabsbt refabsbt.tmp 2012-01-15 22:25:05,909 DEBUG quick_mpl Starting plot: btcal 2012-01-15 22:25:05,909 DEBUG quick_mplplots No data in a_mgl.btm 2012-01-15 22:25:05,910 DEBUG quick_mplplots Returning from Btplot with no output 2012-01-15 22:25:05,910 DEBUG quick_mpl Ending plot: btcal 2012-01-15 22:25:05,910 DEBUG quick_setup nav/as_nav.tmp exists 2012-01-15 22:25:05,910 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:05,910 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/nav 2012-01-15 22:25:05,910 DEBUG quick_setup running python command "as_nav" 2012-01-15 22:25:05,910 DEBUG quick_subs dbname: ../adcpdb/a_mgl output: a_mgl step_size: 1 ndepth: 20 time_ranges: separate year_base= 2012 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2012/01/09 19:39:24 to 2012/01/15 22:24:23 /* the whole time range */ 2012-01-15 22:25:05,911 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2012-01-15 22:25:05,937 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2012-01-15 22:25:05,937 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:05,937 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/cal/watertrk 2012-01-15 22:25:05,937 DEBUG quick_setup running python command "timslip" 2012-01-15 22:25:05,938 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mgl.gps reference_file: ../../nav/a_mgl.nav output_file: a_mgl_7.cal year_base= 2012 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2012-01-15 22:25:05,938 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timslip timslip.tmp 2012-01-15 22:25:05,945 DEBUG quick_mpl Starting plot: wtcal 2012-01-15 22:25:05,946 DEBUG quick_mplplots Found 0 calibration points 2012-01-15 22:25:05,947 DEBUG quick_mplplots Only 0 valid points found; quitting 2012-01-15 22:25:05,947 DEBUG quick_mpl Ending plot: wtcal 2012-01-15 22:25:05,947 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:05,947 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/cal/watertrk 2012-01-15 22:25:05,947 DEBUG quick_setup running python command "run_guess_xducerxy_npy" 2012-01-15 22:25:05,947 DEBUG quick_npy Starting: guess_xducerxy 2012-01-15 22:25:06,015 DEBUG quick_npy Ending: guess_xducerxy 2012-01-15 22:25:06,015 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:06,015 INFO quick_adcp step 21: extract matlab "allbins" 2012-01-15 22:25:06,015 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2012-01-15 22:25:06,015 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:06,015 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/vector 2012-01-15 22:25:06,015 DEBUG quick_setup running python command "timegrid" 2012-01-15 22:25:06,016 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_mgl.tmp 2012-01-15 22:25:06,021 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:06,021 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/vector 2012-01-15 22:25:06,022 DEBUG quick_setup running python command "as_vect" 2012-01-15 22:25:06,022 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_vect.tmp 2012-01-15 22:25:06,063 DEBUG quick_asect done making vector matfiles 2012-01-15 22:25:06,063 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:06,063 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/contour 2012-01-15 22:25:06,064 DEBUG quick_setup running python command "timegrid" 2012-01-15 22:25:06,064 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_mgl.tmp 2012-01-15 22:25:06,070 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:06,070 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/contour 2012-01-15 22:25:06,070 DEBUG quick_setup running python command "as_cont" 2012-01-15 22:25:06,070 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_cont.tmp 2012-01-15 22:25:06,132 DEBUG quick_setup starting in /data/MGL1202/proc/os75nb 2012-01-15 22:25:06,132 DEBUG quick_setup executing commands from /data/MGL1202/proc/os75nb/contour 2012-01-15 22:25:06,133 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_mgl 2012-01-15 22:25:06,244 DEBUG quick_asect done running getmat with "allbins" 2012-01-15 22:25:06,244 INFO quick_adcp --------------------------------------------- 2012-01-15 22:25:06,244 INFO quick_adcp step 22: write "cruise_info.txt" 2012-01-15 22:25:06,260 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2012-01-15 22:25:06,260 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2012-01-15 22:25:06,260 DEBUG root matfile is contour/contour_uv.mat 2012-01-15 22:25:06,262 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2012-01-15 22:25:06,263 DEBUG root matfile is vector/vector_uv.mat 2012-01-15 22:25:06,263 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2012-01-15 22:25:06,263 DEBUG root matfile is contour/contour_xy.mat 2012-01-15 22:25:06,263 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2012-01-15 22:25:06,263 DEBUG root matfile is vector/vector_xy.mat 2012-01-15 22:25:06,264 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2012-01-15 22:25:06,264 DEBUG root about to copy file edit/a_mgl.tem to /home/adcp/www/data/os75nb_temp.asc 2012-01-15 22:25:06,264 INFO root copying edit/a_mgl.tem to /home/adcp/www/data/os75nb_temp.asc 2012-01-15 22:25:06,457 DEBUG root about to copy netcdf file /home/data/MGL1202/proc/os75nb/contour/os75nb.nc to /home/adcp/www/data/os75nb.nc 2012-01-15 22:25:06,462 INFO root copying edit/a_mgl.tem to /home/adcp/www/data/os75nb.nc 2012-01-15 22:25:06,478 INFO root generating pingstats for os75nb 2012-01-15 22:25:06,478 INFO root Ending quick_adcp.py