2011-10-21 18:31:57,650 DEBUG quick_adcp progdir = /home/currents/programs 2011-10-21 18:31:57,650 DEBUG quick_adcp binos = lnx64 2011-10-21 18:31:57,653 INFO quick_adcp importing numpy 2011-10-21 18:31:57,654 INFO quick_adcp importing matplotlib 2011-10-21 18:31:57,654 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_filelist get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_loaddb run_loadping run_lstconfig run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy scanping setflags smoothr timegrid timslip ubprint user_defined_headfunc write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2011-10-21 18:31:57,654 DEBUG quick_adcp cwd is /data/MGL1113/proc/os75nb about to run these steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2011-10-21 18:31:57,655 DEBUG quick_adcp original fix file is a_mgl.gps 2011-10-21 18:31:57,655 DEBUG quick_adcp smoothed nav file is a_mgl_refsm.asc 2011-10-21 18:31:57,665 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MGL1113/raw/os75/mgl2011_284_64896.raw ... 2011-10-21 18:31:57,665 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MGL1113/raw/os75/mgl2011_284_64896.raw ... 2011-10-21 18:31:57,666 DEBUG quick_adcp Fri Oct 21 18:31:57 2011 running quick_adcp.py as follows: --cntfile /home/data/MGL1113/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_mgl dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 30 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx64 binos lnx64 btrk_step 1 cfgpath /home/data/MGL1113/proc/os75nb/config cntfile /home/data/MGL1113/proc/os75nb/os75nb_qpy.cnt commands None configtype python cruisename MGL1113 data_def vmadcp.def datadir /home/data/MGL1113/raw/os75 datafile_glob *.raw datatype uhdas dbname a_mgl dday_bailout None debug False diarystr diary quick_adcp.diary displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/MGL1113/raw/os75/mgl2011_284_64896.raw', '/home/data/MGL1113/raw/os75/mgl2011_284_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_284_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_285_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_286_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_287_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_288_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_289_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_290_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_291_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_64800.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_72000.raw', '/home/data/MGL1113/raw/os75/mgl2011_292_79200.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_00000.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_07200.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_14400.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_21600.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_28800.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_36000.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_43200.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_50400.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_57600.raw', '/home/data/MGL1113/raw/os75/mgl2011_293_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 30 fixfile a_mgl.gps frequency 75 gbin_style python gbindirbase /home/data/MGL1113/gbin hcorr_inst seapath help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 399 max_search_depth 1500 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_mgl.gps overview False pgmin 50 ping_headcorr False pingtype nb post_headcorr None printformats png proc_engine python proc_yearbase 2011 progdir /home/currents/programs py_gbindirbase /home/data/MGL1113/gbin quiet False rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_mgl_refsm.asc sonar os75nb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2011 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2011-10-21 18:31:57,667 DEBUG quick_adcp about to run numpy scan, requiring python gbins 2011-10-21 18:31:57,811 DEBUG quick_adcp in quick_adcp.py: after scan; look for database times in /data/MGL1113/proc/os75nb 2011-10-21 18:31:57,811 DEBUG quick_adcp looking for database with adcpdb/a_mgl*.blk 2011-10-21 18:31:57,812 DEBUG quick_adcp database found: listing blocks 2011-10-21 18:31:57,823 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2011-10-21 18:31:57,823 DEBUG quick_adcp origdb_time_range is 2011/10/12 18:06:42 to 2011/10/21 18:01:40 2011-10-21 18:31:57,823 DEBUG quick_adcp (284.754653 to 293.751157) 2011-10-21 18:31:57,929 INFO quick_adcp --------------------- 2011-10-21 18:31:57,929 INFO quick_adcp loaded_time_range is 2011/10/12 18:06:42 to 2011/10/21 18:31:39 2011-10-21 18:31:57,929 INFO quick_adcp (284.754653 to 293.771979) 2011-10-21 18:31:57,929 INFO quick_adcp origdb_time_range is 2011/10/12 18:06:42 to 2011/10/21 18:01:40 2011-10-21 18:31:57,930 INFO quick_adcp (284.754653 to 293.751157) 2011-10-21 18:31:57,930 INFO quick_adcp thisload_time_range is 2011/10/21 02:06:38 to 2011/10/21 18:31:39 2011-10-21 18:31:57,930 INFO quick_adcp (293.087940 to 293.087940) 2011-10-21 18:31:57,930 INFO quick_adcp --------------------- 2011-10-21 18:31:59,045 DEBUG quick_adcp about to run numpy refsm 2011-10-21 18:31:59,256 DEBUG quick_adcp plotting navigation 2011-10-21 18:32:00,489 DEBUG quick_adcp step 15: rerun nav steps, redo reflayer plots 2011-10-21 18:32:01,193 DEBUG quick_adcp running refsm