2010-09-29 12:53:28,407 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype bb --cfgbase kn199_2b --cruisename kn199_2b --instclass wh --instname wh300 --dbname a_kn --datatype uhdas --datadir /home/data/kn199_2b/raw/wh300 --cfgpath /home/data/kn199_2b/proc/wh300/config --ens_len 120 --ping_headcor --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 --npycalc all --mplplots all 2010-09-29 12:53:28,408 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d wh300 --npycalc all --mplplots all 2010-09-29 12:53:28,411 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-09-29 12:53:28,420 DEBUG quick_adcp progdir = /home/currents/programs 2010-09-29 12:53:28,421 DEBUG quick_adcp binos = lnx 2010-09-29 12:53:28,421 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-09-29 12:53:28,421 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-09-29 12:53:28,421 DEBUG quick_setup numpy calculations to run: refsm 2010-09-29 12:53:28,421 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-09-29 12:53:28,422 DEBUG quick_setup processing data logged with uhdas: 2010-09-29 12:53:28,422 DEBUG quick_setup datatype is uhdas 2010-09-29 12:53:28,422 DEBUG quick_setup pingtype is bb 2010-09-29 12:53:28,422 DEBUG quick_setup instclass is wh 2010-09-29 12:53:28,422 DEBUG quick_setup no post-processing heading correction will be used 2010-09-29 12:53:28,423 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-09-29 12:53:28,471 DEBUG quick_setup found (in edit/asetup.m): 2010-09-29 12:53:28,471 DEBUG quick_setup config.beamangle is 20 2010-09-29 12:53:28,472 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'kn199_2b',... 'cfgpath' , '/home/data/kn199_2b/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-09-29 12:53:28,472 DEBUG quick_setup ------- starting Matlab engine ------- 2010-09-29 12:53:28,472 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-09-29 12:53:28,488 DEBUG call_matlab starting to wait for initial prompt 2010-09-29 12:53:29,932 DEBUG call_matlab received initial prompt 2010-09-29 12:53:30,182 DEBUG quick_adcp cwd is /home/data/kn199_2b/proc/wh300 about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-09-29 12:53:30,182 DEBUG quick_adcp original fix file is a_kn.gps 2010-09-29 12:53:30,183 DEBUG quick_adcp smoothed nav file is a_kn_refsm.asc 2010-09-29 12:53:30,183 DEBUG quick_asect extracting matlab files for wh300, bb pings 2010-09-29 12:53:30,200 DEBUG quick_subs found 33 files using wildcard expansion from "/home/data/kn199_2b/raw/wh300/*.raw" 2010-09-29 12:53:30,200 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/kn199_2b/raw/wh300/kn2010_268_84646.raw /home/data/kn199_2b/raw/wh300/kn2010_269_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_66201.raw /home/data/kn199_2b/raw/wh300/kn2010_270_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_271_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_271_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_271_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_43200.raw 2010-09-29 12:53:30,201 DEBUG quick_adcp LASTFILES invoked. using only 33 files from end of filelist 2010-09-29 12:53:30,201 DEBUG quick_adcp using delblks = 1 2010-09-29 12:53:30,201 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/kn199_2b/raw/wh300/kn2010_268_84646.raw /home/data/kn199_2b/raw/wh300/kn2010_269_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_66201.raw /home/data/kn199_2b/raw/wh300/kn2010_270_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_271_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_271_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_271_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_43200.raw 2010-09-29 12:53:30,203 DEBUG quick_adcp Wed Sep 29 12:53:30 2010 running quick_adcp.py as follows: --cntfile /home/data/kn199_2b/proc/wh300/wh300_qpy.cnt ----- adcpsect variables ------ afilebase a_kn cbasename contour dbname a_kn dbpath ../adcpdb deeper_boundaries [40, 60, 80, 100, 120] firstdepth 13 gridnum 80 increment 2 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_kn allow_reload True auto True beamangle 20 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase kn199_2b cfgpath /home/data/kn199_2b/proc/wh300/config cntfile /home/data/kn199_2b/proc/wh300/wh300_qpy.cnt commands None cruisename kn199_2b data_def vmadcp.def datadir /home/data/kn199_2b/raw/wh300 datafile_glob *.raw datatype uhdas dbname a_kn dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 120 ensgyrorbin False expert None filelist ['/home/data/kn199_2b/raw/wh300/kn2010_268_84646.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_00000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_07200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_14400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_21600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_28800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_36000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_43200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_50400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_57600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_64800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_72000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_79200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_00000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_07200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_14400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_21600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_28800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_36000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_43200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_50400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_57600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_64800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_66201.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_72000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_79200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_00000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_07200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_14400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_21600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_28800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_36000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_43200.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 13 fixfile a_kn.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass wh instname wh300 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'kn199_2b',... 'cfgpath' , '/home/data/kn199_2b/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_kn.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False printformats png proc_yearbase 2010 procdir wh300 progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/kn199_2b/raw/wh300/kn2010_268_84646.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_00000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_07200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_14400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_21600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_28800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_36000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_43200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_50400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_57600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_64800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_72000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_269_79200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_00000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_07200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_14400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_21600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_28800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_36000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_43200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_50400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_57600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_64800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_66201.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_72000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_270_79200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_00000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_07200.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_14400.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_21600.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_28800.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_36000.raw', '/home/data/kn199_2b/raw/wh300/kn2010_271_43200.raw'] setup_info False skip_avg True smfile a_kn_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-09-29 12:53:30,203 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-09-29 12:53:30,204 DEBUG quick_run scanning files for time ranges... 2010-09-29 12:53:30,204 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300/scan 2010-09-29 12:53:30,204 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/scan 2010-09-29 12:53:30,204 DEBUG quick_setup running python command "scanraw" 2010-09-29 12:53:30,205 DEBUG call_matlab --> clear all 2010-09-29 12:53:30,210 DEBUG call_matlab <-- >> 2010-09-29 12:53:30,211 DEBUG call_matlab --> close all 2010-09-29 12:53:30,280 DEBUG call_matlab <-- >> 2010-09-29 12:53:30,281 DEBUG call_matlab --> cd /home/data/kn199_2b/proc/wh300/scan 2010-09-29 12:53:30,283 DEBUG call_matlab <-- >> 2010-09-29 12:53:30,284 DEBUG call_matlab --> scan_tmp 2010-09-29 12:53:31,290 DEBUG call_matlab <-- getting config files from "/home/data/kn199_2b/proc/wh300/config" running "kn199_2b_cfg.m" running "kn199_2b_proc.m" writing scan info to a_kn.scn >> 2010-09-29 12:53:31,290 DEBUG quick_run writing time range from a_kn.scn to a_kn.tr 2010-09-29 12:53:31,291 DEBUG quick_run getting scan time range 2010-09-29 12:53:31,291 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,291 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/scan 2010-09-29 12:53:31,291 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,292 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,293 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,295 DEBUG quick_subs start_end_time 2010/09/26 23:30:46 to 2010/09/29 12:53:13 2010-09-29 12:53:31,295 DEBUG quick_subs dd0: 268.979699 dd1: 271.536956 2010-09-29 12:53:31,295 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,295 DEBUG quick_adcp looking for database with adcpdb/a_kn*.blk 2010-09-29 12:53:31,296 DEBUG quick_adcp database found: listing blocks 2010-09-29 12:53:31,297 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:53:31,298 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:53:31,298 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:53:31,298 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:53:31,320 DEBUG quick_subs database passes. 2010-09-29 12:53:31,321 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:53:31,321 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,321 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,322 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,322 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,322 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,323 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 12:22:48 2010-09-29 12:53:31,323 DEBUG quick_subs dd0: 268.981123 dd1: 271.515833 2010-09-29 12:53:31,323 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:53:31,324 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,324 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,324 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,324 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,325 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,325 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 12:22:48 2010-09-29 12:53:31,326 DEBUG quick_subs dd0: 268.981123 dd1: 271.515833 2010-09-29 12:53:31,326 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-09-29 12:53:31,326 DEBUG quick_adcp origdb_time_range is 2010/09/26 23:32:49 to 2010/09/29 12:22:48 2010-09-29 12:53:31,326 DEBUG quick_adcp (268.981123 to 271.515833) 2010-09-29 12:53:31,327 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-09-29 12:53:31,327 DEBUG quick_subs getting current (remaining after deletion) database times 2010-09-29 12:53:31,328 DEBUG quick_subs ['adcpdb/a_kn001.blk', 'adcpdb/a_kn004.blk', 'adcpdb/a_kn010.blk', 'adcpdb/a_kn005.blk', 'adcpdb/a_kn006.blk', 'adcpdb/a_kn011.blk', 'adcpdb/a_kn003.blk', 'adcpdb/a_kn007.blk', 'adcpdb/a_kn008.blk', 'adcpdb/a_kn009.blk', 'adcpdb/a_kn013.blk', 'adcpdb/a_kn002.blk', 'adcpdb/a_kndir.blk', 'adcpdb/a_kn012.blk'] 2010-09-29 12:53:31,328 DEBUG quick_subs length is 14 2010-09-29 12:53:31,328 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:53:31,328 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:53:31,329 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:53:31,329 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:53:31,342 DEBUG quick_subs database passes. 2010-09-29 12:53:31,343 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:53:31,343 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,343 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,343 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,344 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,344 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,345 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 12:22:48 2010-09-29 12:53:31,345 DEBUG quick_subs dd0: 268.981123 dd1: 271.515833 2010-09-29 12:53:31,345 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,346 DEBUG quick_subs reading time range 2010-09-29 12:53:31,346 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 12:22:48 2010-09-29 12:53:31,346 DEBUG quick_subs dd0: 268.981123 dd1: 271.515833 2010-09-29 12:53:31,347 INFO quick_subs Wed Sep 29 12:53:31 2010 2010-09-29 12:53:31,347 INFO quick_subs checking database time range by listblk 2010-09-29 12:53:31,348 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:53:31,348 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:53:31,349 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:53:31,349 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:53:31,362 DEBUG quick_subs database passes. 2010-09-29 12:53:31,363 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:53:31,363 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,363 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,364 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,364 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,365 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,365 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 12:22:48 2010-09-29 12:53:31,365 DEBUG quick_subs dd0: 268.981123 dd1: 271.515833 2010-09-29 12:53:31,368 INFO quick_subs found line /* 0 n= 146 a_kn001.blk */ 2010/09/26 23:32:49 to 2010/09/27 04:23:38 2010-09-29 12:53:31,368 INFO quick_subs found line /* 1 n= 146 a_kn002.blk */ 2010/09/27 04:25:38 to 2010/09/27 09:16:18 2010-09-29 12:53:31,368 INFO quick_subs found line /* 2 n= 146 a_kn003.blk */ 2010/09/27 09:18:18 to 2010/09/27 14:10:19 2010-09-29 12:53:31,369 INFO quick_subs found line /* 3 n= 146 a_kn004.blk */ 2010/09/27 14:12:20 to 2010/09/27 19:04:01 2010-09-29 12:53:31,369 INFO quick_subs found line /* 4 n= 146 a_kn005.blk */ 2010/09/27 19:06:02 to 2010/09/27 23:57:28 2010-09-29 12:53:31,369 INFO quick_subs found line /* 5 n= 146 a_kn006.blk */ 2010/09/27 23:59:29 to 2010/09/28 04:49:58 2010-09-29 12:53:31,369 INFO quick_subs found line /* 6 n= 146 a_kn007.blk */ 2010/09/28 04:51:58 to 2010/09/28 09:42:59 2010-09-29 12:53:31,370 INFO quick_subs found line /* 7 n= 146 a_kn008.blk */ 2010/09/28 09:44:59 to 2010/09/28 14:36:48 2010-09-29 12:53:31,370 INFO quick_subs found line /* 8 n= 112 a_kn009.blk */ 2010/09/28 14:38:49 to 2010/09/28 18:22:06 2010-09-29 12:53:31,370 INFO quick_subs found line /* 9 n= 146 a_kn010.blk */ 2010/09/28 18:25:21 to 2010/09/28 23:16:17 2010-09-29 12:53:31,370 INFO quick_subs found line /* 10 n= 146 a_kn011.blk */ 2010/09/28 23:18:17 to 2010/09/29 04:08:46 2010-09-29 12:53:31,371 INFO quick_subs found line /* 11 n= 146 a_kn012.blk */ 2010/09/29 04:10:47 to 2010/09/29 09:01:55 2010-09-29 12:53:31,371 INFO quick_subs found line /* 12 n= 100 a_kn013.blk */ 2010/09/29 09:03:56 to 2010/09/29 12:22:48 2010-09-29 12:53:31,371 INFO quick_subs scan data start at 268.9796991 2010-09-29 12:53:31,371 INFO quick_subs scan time range: 2010/09/26 23:30:46 to 2010/09/29 12:53:13 2010-09-29 12:53:31,372 INFO quick_subs codasdb ends at 271.5158333 (2010/09/29 12:22:48) 2010-09-29 12:53:31,372 DEBUG quick_subs ... changed dirs, in /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,373 DEBUG quick_subs deleting these files: ['a_kn013.blk'] 2010-09-29 12:53:31,373 DEBUG quick_subs getting current (remaining after deletion) database times 2010-09-29 12:53:31,374 DEBUG quick_subs ['adcpdb/a_kn001.blk', 'adcpdb/a_kn004.blk', 'adcpdb/a_kn010.blk', 'adcpdb/a_kn005.blk', 'adcpdb/a_kn006.blk', 'adcpdb/a_kn011.blk', 'adcpdb/a_kn003.blk', 'adcpdb/a_kn007.blk', 'adcpdb/a_kn008.blk', 'adcpdb/a_kn009.blk', 'adcpdb/a_kn002.blk', 'adcpdb/a_kn012.blk'] 2010-09-29 12:53:31,374 DEBUG quick_subs length is 12 2010-09-29 12:53:31,374 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:53:31,375 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:53:31,375 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:53:31,390 DEBUG quick_subs database passes. 2010-09-29 12:53:31,391 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:53:31,391 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,391 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,392 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,392 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,392 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,393 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 09:01:55 2010-09-29 12:53:31,393 DEBUG quick_subs dd0: 268.981123 dd1: 271.376331 2010-09-29 12:53:31,394 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,394 DEBUG quick_subs reading time range 2010-09-29 12:53:31,394 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 09:01:55 2010-09-29 12:53:31,394 DEBUG quick_subs dd0: 268.981123 dd1: 271.376331 2010-09-29 12:53:31,395 DEBUG quick_subs codas database currently goes from 2010/09/26 23:32:49 to 2010/09/29 09:01:55 2010-09-29 12:53:31,395 DEBUG quick_subs (268.981123 to 271.376331) 2010-09-29 12:53:31,396 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012 2010-09-29 12:53:31,397 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 2010-09-29 12:53:31,397 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012'] 2010-09-29 12:53:31,398 DEBUG quick_subs checked: unloaded blkstrs: ['013'] 2010-09-29 12:53:31,398 DEBUG quick_subs first unloaded file is load/ens_blk013.cmd 2010-09-29 12:53:31,399 DEBUG quick_subs data goes from 2010/09/29 09:03:56 to 2010/09/29 12:53:13 2010-09-29 12:53:31,400 DEBUG quick_subs (271.377731 to 271.536956) 2010-09-29 12:53:31,400 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/kn199_2b/raw/wh300/kn2010_268_84646.raw /home/data/kn199_2b/raw/wh300/kn2010_269_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_66201.raw /home/data/kn199_2b/raw/wh300/kn2010_270_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_271_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_271_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_271_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_43200.raw 2010-09-29 12:53:31,400 INFO quick_run Wed Sep 29 12:53:31 2010 2010-09-29 12:53:31,400 INFO quick_run about to load uhdas files 2010-09-29 12:53:31,400 INFO quick_run /home/data/kn199_2b/raw/wh300/kn2010_268_84646.raw /home/data/kn199_2b/raw/wh300/kn2010_269_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_269_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_269_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_269_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_269_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_269_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_43200.raw /home/data/kn199_2b/raw/wh300/kn2010_270_50400.raw /home/data/kn199_2b/raw/wh300/kn2010_270_57600.raw /home/data/kn199_2b/raw/wh300/kn2010_270_64800.raw /home/data/kn199_2b/raw/wh300/kn2010_270_66201.raw /home/data/kn199_2b/raw/wh300/kn2010_270_72000.raw /home/data/kn199_2b/raw/wh300/kn2010_270_79200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_00000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_07200.raw /home/data/kn199_2b/raw/wh300/kn2010_271_14400.raw /home/data/kn199_2b/raw/wh300/kn2010_271_21600.raw /home/data/kn199_2b/raw/wh300/kn2010_271_28800.raw /home/data/kn199_2b/raw/wh300/kn2010_271_36000.raw /home/data/kn199_2b/raw/wh300/kn2010_271_43200.raw 2010-09-29 12:53:31,401 DEBUG quick_setup load/ldcodas.tmp exists 2010-09-29 12:53:31,401 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,401 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/load 2010-09-29 12:53:31,401 DEBUG quick_setup running python command "ldcodas" 2010-09-29 12:53:31,402 DEBUG quick_subs in /home/data/kn199_2b/proc/wh300/load 2010-09-29 12:53:31,402 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012'] 2010-09-29 12:53:31,403 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013'] 2010-09-29 12:53:31,404 DEBUG quick_subs starttime is 2010/09/29 09:03:56 2010-09-29 12:53:31,404 DEBUG quick_subs RESETTING thisload_time_range 2010-09-29 12:53:31,405 DEBUG quick_subs time range of data to be loaded: 2010/09/29 09:03:56 to 2010/09/29 12:53:13 2010-09-29 12:53:31,405 DEBUG quick_subs data startdd 271.377731 data enddd 271.536956 2010-09-29 12:53:31,405 DEBUG quick_subs about to load from these cmd files ['ens_blk013.cmd'] 2010-09-29 12:53:31,405 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_kn DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk013.cmd 2010-09-29 12:53:31,406 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-09-29 12:53:31,454 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:53:31,455 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:53:31,455 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:53:31,456 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:53:31,469 DEBUG quick_subs database passes. 2010-09-29 12:53:31,470 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:53:31,470 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,470 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,471 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,471 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,471 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,472 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 12:52:54 2010-09-29 12:53:31,472 DEBUG quick_subs dd0: 268.981123 dd1: 271.536736 2010-09-29 12:53:31,473 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:53:31,473 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,473 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,473 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:53:31,473 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:53:31,474 DEBUG quick_subs extracting time range 2010-09-29 12:53:31,475 DEBUG quick_subs start_end_time 2010/09/26 23:32:49 to 2010/09/29 12:52:54 2010-09-29 12:53:31,475 DEBUG quick_subs dd0: 268.981123 dd1: 271.536736 2010-09-29 12:53:31,475 DEBUG quick_adcp loaded_time_range is 2010/09/26 23:32:49 to 2010/09/29 12:52:54 2010-09-29 12:53:31,476 DEBUG quick_adcp (268.981123 to 271.536736) 2010-09-29 12:53:31,476 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,476 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/adcpdb 2010-09-29 12:53:31,476 DEBUG quick_setup running python command "lst_conf" 2010-09-29 12:53:31,477 DEBUG quick_subs dbname: a_kn output: a_kn.cnh time_ranges: all 2010-09-29 12:53:31,477 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-09-29 12:53:31,497 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-09-29 12:53:31,498 DEBUG quick_run executing commands from /home/data/kn199_2b/proc/wh300/edit 2010-09-29 12:53:31,498 DEBUG quick_run setup.m exists. not replacing 2010-09-29 12:53:31,498 DEBUG quick_run asetup.m exists. not replacing 2010-09-29 12:53:31,499 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-09-29 12:53:31,499 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-09-29 12:53:31,499 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,499 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/edit 2010-09-29 12:53:31,500 DEBUG quick_setup running python command "setflags" 2010-09-29 12:53:31,500 DEBUG quick_subs dbname: ../adcpdb/a_kn pg_min: 50 set_range_bit time_ranges: all 2010-09-29 12:53:31,500 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-09-29 12:53:31,537 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-09-29 12:53:31,537 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,537 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:31,538 DEBUG quick_setup running python command "catnav" 2010-09-29 12:53:31,541 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-09-29 12:53:31,541 DEBUG quick_run hcorr_inst is posmv 2010-09-29 12:53:31,542 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-09-29 12:53:31,542 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:31,542 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/cal/rotate 2010-09-29 12:53:31,542 DEBUG quick_setup running python command "lst_hdg" 2010-09-29 12:53:31,543 DEBUG quick_subs dbname: ../../adcpdb/a_kn output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-09-29 12:53:31,543 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-09-29 12:53:31,573 DEBUG quick_mpl Starting plot: hcorr 2010-09-29 12:53:31,639 DEBUG quick_mplplots found 2.555618 days of data 2010-09-29 12:53:31,640 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-09-29 12:53:31,640 DEBUG quick_mplplots printing 1 pages 2010-09-29 12:53:32,725 DEBUG quick_mpl Ending plot: hcorr 2010-09-29 12:53:32,725 DEBUG quick_run ------------ step 7: rotate ------------- 2010-09-29 12:53:32,725 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:32,726 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/cal/rotate 2010-09-29 12:53:32,726 DEBUG quick_setup running python command "rotated" 2010-09-29 12:53:32,738 DEBUG quick_subs last rotated time from log file: 2010/09/29 12:23:06 2010-09-29 12:53:32,739 DEBUG quick_subs time range of currently loaded data: 2010/09/26 23:32:49 to 2010/09/29 12:52:54 2010-09-29 12:53:32,739 DEBUG quick_subs (268.981123 to 271.536736) 2010-09-29 12:53:32,740 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-09-29 12:53:32,740 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:32,740 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/cal/rotate 2010-09-29 12:53:32,741 DEBUG quick_setup running python command "rotate" 2010-09-29 12:53:32,741 DEBUG quick_subs DB_NAME: ../../adcpdb/a_kn LOG_FILE: rotate.log TIME_RANGE: 2010/09/29 09:03:56 to 2010/09/29 12:53:13 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-09-29 12:53:32,741 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-09-29 12:53:32,753 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-09-29 12:53:32,753 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-29 12:53:32,753 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:32,754 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:32,754 DEBUG quick_setup running python command "as_nav" 2010-09-29 12:53:32,754 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/26 23:32:49 to 2010/09/29 12:52:54 /* the whole time range */ 2010-09-29 12:53:32,755 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-29 12:53:32,811 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-09-29 12:53:32,812 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:32,812 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:32,812 DEBUG quick_setup running python command "refabs" 2010-09-29 12:53:32,812 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.nav fix_file: a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 120 gap_tolerance= 10 2010-09-29 12:53:32,813 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-09-29 12:53:32,860 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-09-29 12:53:32,860 DEBUG quick_setup nav/smoothr.tmp exists 2010-09-29 12:53:32,860 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:32,861 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:32,861 DEBUG quick_setup running python command "smoothr" 2010-09-29 12:53:32,861 DEBUG quick_subs reference_file: a_kn.nav refabs_output: a_kn.ref output: a_kn.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-09-29 12:53:32,862 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-09-29 12:53:33,082 DEBUG quick_adcp about to run numpy refsm 2010-09-29 12:53:33,083 DEBUG quick_npy Starting: refsm 2010-09-29 12:53:33,277 INFO nav dtmin = -0.50 dtmax = 0.50 2010-09-29 12:53:33,978 DEBUG quick_npy Ending: refsm 2010-09-29 12:53:33,980 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-09-29 12:53:33,981 DEBUG quick_setup nav/putnav.tmp exists 2010-09-29 12:53:33,982 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:33,983 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:33,983 DEBUG quick_setup running python command "putnav" 2010-09-29 12:53:33,983 DEBUG quick_subs dbname: ../adcpdb/a_kn position_file: a_kn_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-09-29 12:53:33,985 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-09-29 12:53:34,108 DEBUG quick_adcp plotting navigation 2010-09-29 12:53:34,109 DEBUG quick_mpl Starting plot: nav 2010-09-29 12:53:34,999 DEBUG quick_mpl Ending plot: nav 2010-09-29 12:53:35,000 DEBUG quick_mpl Starting plot: refl 2010-09-29 12:53:35,150 DEBUG quick_mplplots found 2.552832 days of data 2010-09-29 12:53:35,150 DEBUG quick_mplplots start day is 268.000000 2010-09-29 12:53:35,150 DEBUG quick_mplplots figures with 2.000000 days per page 2010-09-29 12:53:35,150 DEBUG quick_mplplots printing 2 pages 2010-09-29 12:53:35,151 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-09-29 12:53:35,151 INFO quick_mplplots startdd is 268.0 2010-09-29 12:53:35,151 INFO quick_mplplots dt is 2.0 2010-09-29 12:53:36,949 DEBUG quick_mpl Ending plot: refl 2010-09-29 12:53:36,950 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-09-29 12:53:36,950 DEBUG quick_run find profile flags ------------ *** ------------- 2010-09-29 12:53:36,950 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:36,951 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/edit 2010-09-29 12:53:36,951 DEBUG quick_setup running python command "aedit" 2010-09-29 12:53:39,685 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-09-29 12:53:39,686 DEBUG quick_run starting in: /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:39,686 DEBUG quick_run executing commands from: edit 2010-09-29 12:53:39,690 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_kn abottom_tmp.asc 2010-09-29 12:53:39,700 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_kn abadprf_tmp.asc 2010-09-29 12:53:39,709 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_kn abadbin_tmp.asc 2010-09-29 12:53:39,720 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_kn 20 2010-09-29 12:53:39,731 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-09-29 12:53:39,767 DEBUG quick_run changing directories back to /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:39,768 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-09-29 12:53:39,768 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-09-29 12:53:39,768 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-29 12:53:39,769 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:39,769 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:39,769 DEBUG quick_setup running python command "as_nav" 2010-09-29 12:53:39,770 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/26 23:32:49 to 2010/09/29 12:52:54 /* the whole time range */ 2010-09-29 12:53:39,770 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-29 12:53:39,827 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-09-29 12:53:39,828 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:39,828 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:39,828 DEBUG quick_setup running python command "refabs" 2010-09-29 12:53:39,829 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.nav fix_file: a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 120 gap_tolerance= 10 2010-09-29 12:53:39,829 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-09-29 12:53:39,879 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-09-29 12:53:39,880 DEBUG quick_setup nav/smoothr.tmp exists 2010-09-29 12:53:39,880 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:39,880 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:39,881 DEBUG quick_setup running python command "smoothr" 2010-09-29 12:53:39,881 DEBUG quick_subs reference_file: a_kn.nav refabs_output: a_kn.ref output: a_kn.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-09-29 12:53:39,881 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-09-29 12:53:40,102 DEBUG quick_adcp running refsm 2010-09-29 12:53:40,103 DEBUG quick_npy Starting: refsm 2010-09-29 12:53:40,222 INFO nav dtmin = -0.50 dtmax = 0.50 2010-09-29 12:53:40,510 DEBUG quick_npy Ending: refsm 2010-09-29 12:53:40,510 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-09-29 12:53:40,510 DEBUG quick_setup nav/putnav.tmp exists 2010-09-29 12:53:40,510 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:40,511 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:40,511 DEBUG quick_setup running python command "putnav" 2010-09-29 12:53:40,511 DEBUG quick_subs dbname: ../adcpdb/a_kn position_file: a_kn_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-09-29 12:53:40,512 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-09-29 12:53:40,575 DEBUG quick_mpl Starting plot: nav 2010-09-29 12:53:41,481 DEBUG quick_mpl Ending plot: nav 2010-09-29 12:53:41,499 DEBUG quick_mpl Starting plot: refl 2010-09-29 12:53:41,652 DEBUG quick_mplplots found 2.552832 days of data 2010-09-29 12:53:41,653 DEBUG quick_mplplots start day is 268.000000 2010-09-29 12:53:41,653 DEBUG quick_mplplots figures with 2.000000 days per page 2010-09-29 12:53:41,653 DEBUG quick_mplplots printing 2 pages 2010-09-29 12:53:41,653 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-09-29 12:53:41,654 INFO quick_mplplots startdd is 268.0 2010-09-29 12:53:41,654 INFO quick_mplplots dt is 2.0 2010-09-29 12:53:44,573 DEBUG quick_mpl Ending plot: refl 2010-09-29 12:53:44,573 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-09-29 12:53:44,573 DEBUG quick_setup edit/lst_temp.tmp exists 2010-09-29 12:53:44,574 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:44,574 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/edit 2010-09-29 12:53:44,574 DEBUG quick_setup running python command "lst_temp" 2010-09-29 12:53:44,575 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn.tem step_size= 1 year_base= 2010 time_ranges: all 2010-09-29 12:53:44,575 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-09-29 12:53:44,653 DEBUG quick_mpl Starting plot: temp 2010-09-29 12:53:44,731 DEBUG quick_mplplots plotting 1833 points 2010-09-29 12:53:45,353 DEBUG quick_mpl Ending plot: temp 2010-09-29 12:53:45,354 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-09-29 12:53:45,354 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-09-29 12:53:45,355 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:45,355 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/cal/botmtrk 2010-09-29 12:53:45,355 DEBUG quick_setup running python command "lst_btrk" 2010-09-29 12:53:45,356 DEBUG quick_subs dbname: ../../adcpdb/a_kn output: a_kn.btm step_size= 1 year_base= 2010 time_ranges: 2010/09/26 23:32:49 to 2010/09/29 12:52:54 /* whole time range */ 2010-09-29 12:53:45,356 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-09-29 12:53:45,372 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-09-29 12:53:45,372 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:45,373 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/cal/botmtrk 2010-09-29 12:53:45,373 DEBUG quick_setup running python command "refabsbt" 2010-09-29 12:53:45,373 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.btm fix_file: ../../nav/a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 120 gap_tolerance= 60 2010-09-29 12:53:45,374 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-09-29 12:53:45,382 DEBUG quick_mpl Starting plot: btcal 2010-09-29 12:53:45,383 DEBUG quick_mplplots No data in a_kn.btm 2010-09-29 12:53:45,383 DEBUG quick_mplplots Returning from Btplot with no output 2010-09-29 12:53:45,384 DEBUG quick_mpl Ending plot: btcal 2010-09-29 12:53:45,384 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-29 12:53:45,384 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:45,384 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/nav 2010-09-29 12:53:45,385 DEBUG quick_setup running python command "as_nav" 2010-09-29 12:53:45,385 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/26 23:32:49 to 2010/09/29 12:52:54 /* the whole time range */ 2010-09-29 12:53:45,385 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-29 12:53:45,442 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-09-29 12:53:45,443 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:45,443 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/cal/watertrk 2010-09-29 12:53:45,444 DEBUG quick_setup running python command "timslip" 2010-09-29 12:53:45,444 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_kn.gps reference_file: ../../nav/a_kn.nav output_file: a_kn_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-09-29 12:53:45,444 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-09-29 12:53:45,471 DEBUG quick_mpl Starting plot: wtcal 2010-09-29 12:53:45,476 DEBUG quick_mplplots Found 43 calibration points 2010-09-29 12:53:47,498 DEBUG quick_mpl Ending plot: wtcal 2010-09-29 12:53:47,498 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-09-29 12:53:47,498 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:47,499 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/vector 2010-09-29 12:53:47,499 DEBUG quick_setup running python command "timegrid" 2010-09-29 12:53:47,499 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_kn.tmp 2010-09-29 12:53:47,508 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:47,508 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/vector 2010-09-29 12:53:47,508 DEBUG quick_setup running python command "as_vect" 2010-09-29 12:53:47,509 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-09-29 12:53:47,560 DEBUG quick_asect done making vector matfiles 2010-09-29 12:53:47,560 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:47,561 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/contour 2010-09-29 12:53:47,561 DEBUG quick_setup running python command "timegrid" 2010-09-29 12:53:47,561 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_kn.tmp 2010-09-29 12:53:47,571 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:47,571 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/contour 2010-09-29 12:53:47,572 DEBUG quick_setup running python command "as_cont" 2010-09-29 12:53:47,572 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-09-29 12:53:47,662 DEBUG quick_setup starting in /home/data/kn199_2b/proc/wh300 2010-09-29 12:53:47,663 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/wh300/contour 2010-09-29 12:53:47,663 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_kn 2010-09-29 12:53:47,912 DEBUG quick_asect done running getmat with "allbins" 2010-09-29 12:53:48,034 INFO root copying NOFIG to /home/adcp/www/figures/wh300_hcorr_plot.png 2010-09-29 12:53:48,035 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/wh300_hcorr_plot_thumb.png 2010-09-29 12:53:48,036 DEBUG root matfile is contour/contour_uv.mat 2010-09-29 12:53:48,041 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/wh300_cont_uv.mat 2010-09-29 12:53:48,041 DEBUG root matfile is vector/vector_uv.mat 2010-09-29 12:53:48,042 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/wh300_vect_uv.mat 2010-09-29 12:53:48,042 DEBUG root matfile is contour/contour_xy.mat 2010-09-29 12:53:48,045 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/wh300_cont_xy.mat 2010-09-29 12:53:48,045 DEBUG root matfile is vector/vector_xy.mat 2010-09-29 12:53:48,047 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/wh300_vect_xy.mat 2010-09-29 12:53:48,048 DEBUG root about to copy file edit/a_kn.tem to /home/adcp/www/data/wh300_temp.asc 2010-09-29 12:53:48,049 INFO root copying edit/a_kn.tem to /home/adcp/www/data/wh300_temp.asc 2010-09-29 12:53:48,050 INFO root Ending quick_adcp.py 2010-09-29 12:53:48,127 DEBUG quick_setup killed matlab engine