2010-09-29 12:54:02,298 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype bb --cfgbase kn199_2b --cruisename kn199_2b --instclass os --instname os75 --dbname a_kn --datatype uhdas --datadir /home/data/kn199_2b/raw/os75 --cfgpath /home/data/kn199_2b/proc/os75bb/config --ens_len 300 --ping_headcor --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 --npycalc all --mplplots all 2010-09-29 12:54:02,299 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75bb --npycalc all --mplplots all 2010-09-29 12:54:02,302 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-09-29 12:54:02,303 DEBUG quick_adcp progdir = /home/currents/programs 2010-09-29 12:54:02,303 DEBUG quick_adcp binos = lnx 2010-09-29 12:54:02,303 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-09-29 12:54:02,303 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-09-29 12:54:02,304 DEBUG quick_setup numpy calculations to run: refsm 2010-09-29 12:54:02,304 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-09-29 12:54:02,304 DEBUG quick_setup processing data logged with uhdas: 2010-09-29 12:54:02,304 DEBUG quick_setup datatype is uhdas 2010-09-29 12:54:02,304 DEBUG quick_setup pingtype is bb 2010-09-29 12:54:02,304 DEBUG quick_setup instclass is os 2010-09-29 12:54:02,305 DEBUG quick_setup no post-processing heading correction will be used 2010-09-29 12:54:02,305 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-09-29 12:54:02,325 DEBUG quick_setup found (in edit/asetup.m): 2010-09-29 12:54:02,325 DEBUG quick_setup config.beamangle is 30 2010-09-29 12:54:02,325 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'bb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'kn199_2b',... 'cfgpath' , '/home/data/kn199_2b/proc/os75bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-09-29 12:54:02,325 DEBUG quick_setup ------- starting Matlab engine ------- 2010-09-29 12:54:02,326 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-09-29 12:54:02,332 DEBUG call_matlab starting to wait for initial prompt 2010-09-29 12:54:03,700 DEBUG call_matlab received initial prompt 2010-09-29 12:54:04,074 DEBUG quick_adcp cwd is /home/data/kn199_2b/proc/os75bb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-09-29 12:54:04,075 DEBUG quick_adcp original fix file is a_kn.gps 2010-09-29 12:54:04,075 DEBUG quick_adcp smoothed nav file is a_kn_refsm.asc 2010-09-29 12:54:04,076 DEBUG quick_asect extracting matlab files for os75, bb pings 2010-09-29 12:54:04,085 DEBUG quick_subs found 33 files using wildcard expansion from "/home/data/kn199_2b/raw/os75/*.raw" 2010-09-29 12:54:04,086 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/kn199_2b/raw/os75/kn2010_268_84646.raw /home/data/kn199_2b/raw/os75/kn2010_269_00000.raw /home/data/kn199_2b/raw/os75/kn2010_269_07200.raw /home/data/kn199_2b/raw/os75/kn2010_269_14400.raw /home/data/kn199_2b/raw/os75/kn2010_269_21600.raw /home/data/kn199_2b/raw/os75/kn2010_269_28800.raw /home/data/kn199_2b/raw/os75/kn2010_269_36000.raw /home/data/kn199_2b/raw/os75/kn2010_269_43200.raw /home/data/kn199_2b/raw/os75/kn2010_269_50400.raw /home/data/kn199_2b/raw/os75/kn2010_269_57600.raw /home/data/kn199_2b/raw/os75/kn2010_269_64800.raw /home/data/kn199_2b/raw/os75/kn2010_269_72000.raw /home/data/kn199_2b/raw/os75/kn2010_269_79200.raw /home/data/kn199_2b/raw/os75/kn2010_270_00000.raw /home/data/kn199_2b/raw/os75/kn2010_270_07200.raw /home/data/kn199_2b/raw/os75/kn2010_270_14400.raw /home/data/kn199_2b/raw/os75/kn2010_270_21600.raw /home/data/kn199_2b/raw/os75/kn2010_270_28800.raw /home/data/kn199_2b/raw/os75/kn2010_270_36000.raw /home/data/kn199_2b/raw/os75/kn2010_270_43200.raw /home/data/kn199_2b/raw/os75/kn2010_270_50400.raw /home/data/kn199_2b/raw/os75/kn2010_270_57600.raw /home/data/kn199_2b/raw/os75/kn2010_270_64800.raw /home/data/kn199_2b/raw/os75/kn2010_270_66201.raw /home/data/kn199_2b/raw/os75/kn2010_270_72000.raw /home/data/kn199_2b/raw/os75/kn2010_270_79200.raw /home/data/kn199_2b/raw/os75/kn2010_271_00000.raw /home/data/kn199_2b/raw/os75/kn2010_271_07200.raw /home/data/kn199_2b/raw/os75/kn2010_271_14400.raw /home/data/kn199_2b/raw/os75/kn2010_271_21600.raw /home/data/kn199_2b/raw/os75/kn2010_271_28800.raw /home/data/kn199_2b/raw/os75/kn2010_271_36000.raw /home/data/kn199_2b/raw/os75/kn2010_271_43200.raw 2010-09-29 12:54:04,086 DEBUG quick_adcp LASTFILES invoked. using only 33 files from end of filelist 2010-09-29 12:54:04,086 DEBUG quick_adcp using delblks = 1 2010-09-29 12:54:04,087 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/kn199_2b/raw/os75/kn2010_268_84646.raw /home/data/kn199_2b/raw/os75/kn2010_269_00000.raw /home/data/kn199_2b/raw/os75/kn2010_269_07200.raw /home/data/kn199_2b/raw/os75/kn2010_269_14400.raw /home/data/kn199_2b/raw/os75/kn2010_269_21600.raw /home/data/kn199_2b/raw/os75/kn2010_269_28800.raw /home/data/kn199_2b/raw/os75/kn2010_269_36000.raw /home/data/kn199_2b/raw/os75/kn2010_269_43200.raw /home/data/kn199_2b/raw/os75/kn2010_269_50400.raw /home/data/kn199_2b/raw/os75/kn2010_269_57600.raw /home/data/kn199_2b/raw/os75/kn2010_269_64800.raw /home/data/kn199_2b/raw/os75/kn2010_269_72000.raw /home/data/kn199_2b/raw/os75/kn2010_269_79200.raw /home/data/kn199_2b/raw/os75/kn2010_270_00000.raw /home/data/kn199_2b/raw/os75/kn2010_270_07200.raw /home/data/kn199_2b/raw/os75/kn2010_270_14400.raw /home/data/kn199_2b/raw/os75/kn2010_270_21600.raw /home/data/kn199_2b/raw/os75/kn2010_270_28800.raw /home/data/kn199_2b/raw/os75/kn2010_270_36000.raw /home/data/kn199_2b/raw/os75/kn2010_270_43200.raw /home/data/kn199_2b/raw/os75/kn2010_270_50400.raw /home/data/kn199_2b/raw/os75/kn2010_270_57600.raw /home/data/kn199_2b/raw/os75/kn2010_270_64800.raw /home/data/kn199_2b/raw/os75/kn2010_270_66201.raw /home/data/kn199_2b/raw/os75/kn2010_270_72000.raw /home/data/kn199_2b/raw/os75/kn2010_270_79200.raw /home/data/kn199_2b/raw/os75/kn2010_271_00000.raw /home/data/kn199_2b/raw/os75/kn2010_271_07200.raw /home/data/kn199_2b/raw/os75/kn2010_271_14400.raw /home/data/kn199_2b/raw/os75/kn2010_271_21600.raw /home/data/kn199_2b/raw/os75/kn2010_271_28800.raw /home/data/kn199_2b/raw/os75/kn2010_271_36000.raw /home/data/kn199_2b/raw/os75/kn2010_271_43200.raw 2010-09-29 12:54:04,089 DEBUG quick_adcp Wed Sep 29 12:54:04 2010 running quick_adcp.py as follows: --cntfile /home/data/kn199_2b/proc/os75bb/os75bb_qpy.cnt ----- adcpsect variables ------ afilebase a_kn cbasename contour dbname a_kn dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 21 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_kn allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase kn199_2b cfgpath /home/data/kn199_2b/proc/os75bb/config cntfile /home/data/kn199_2b/proc/os75bb/os75bb_qpy.cnt commands None cruisename kn199_2b data_def vmadcp.def datadir /home/data/kn199_2b/raw/os75 datafile_glob *.raw datatype uhdas dbname a_kn dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/kn199_2b/raw/os75/kn2010_268_84646.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_00000.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_07200.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_14400.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_21600.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_28800.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_36000.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_43200.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_50400.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_57600.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_64800.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_72000.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_79200.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_00000.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_07200.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_14400.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_21600.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_28800.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_36000.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_43200.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_50400.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_57600.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_64800.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_66201.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_72000.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_79200.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_00000.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_07200.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_14400.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_21600.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_28800.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_36000.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_43200.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 21 fixfile a_kn.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'bb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'kn199_2b',... 'cfgpath' , '/home/data/kn199_2b/proc/os75bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_kn.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False printformats png proc_yearbase 2010 procdir os75bb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/kn199_2b/raw/os75/kn2010_268_84646.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_00000.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_07200.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_14400.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_21600.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_28800.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_36000.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_43200.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_50400.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_57600.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_64800.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_72000.raw', '/home/data/kn199_2b/raw/os75/kn2010_269_79200.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_00000.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_07200.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_14400.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_21600.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_28800.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_36000.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_43200.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_50400.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_57600.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_64800.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_66201.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_72000.raw', '/home/data/kn199_2b/raw/os75/kn2010_270_79200.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_00000.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_07200.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_14400.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_21600.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_28800.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_36000.raw', '/home/data/kn199_2b/raw/os75/kn2010_271_43200.raw'] setup_info False skip_avg True smfile a_kn_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-09-29 12:54:04,089 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-09-29 12:54:04,089 DEBUG quick_run scanning files for time ranges... 2010-09-29 12:54:04,089 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb/scan 2010-09-29 12:54:04,090 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/scan 2010-09-29 12:54:04,090 DEBUG quick_setup running python command "scanraw" 2010-09-29 12:54:04,090 DEBUG call_matlab --> clear all 2010-09-29 12:54:04,103 DEBUG call_matlab <-- >> 2010-09-29 12:54:04,103 DEBUG call_matlab --> close all 2010-09-29 12:54:04,236 DEBUG call_matlab <-- >> 2010-09-29 12:54:04,236 DEBUG call_matlab --> cd /home/data/kn199_2b/proc/os75bb/scan 2010-09-29 12:54:04,239 DEBUG call_matlab <-- >> 2010-09-29 12:54:04,239 DEBUG call_matlab --> scan_tmp 2010-09-29 12:54:05,567 DEBUG call_matlab <-- getting config files from "/home/data/kn199_2b/proc/os75bb/config" running "kn199_2b_cfg.m" running "kn199_2b_proc.m" writing scan info to a_kn.scn >> 2010-09-29 12:54:05,567 DEBUG quick_run writing time range from a_kn.scn to a_kn.tr 2010-09-29 12:54:05,567 DEBUG quick_run getting scan time range 2010-09-29 12:54:05,568 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,568 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/scan 2010-09-29 12:54:05,568 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,568 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,570 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,572 DEBUG quick_subs start_end_time 2010/09/26 23:30:52 to 2010/09/29 12:49:47 2010-09-29 12:54:05,572 DEBUG quick_subs dd0: 268.979769 dd1: 271.534572 2010-09-29 12:54:05,572 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,572 DEBUG quick_adcp looking for database with adcpdb/a_kn*.blk 2010-09-29 12:54:05,574 DEBUG quick_adcp database found: listing blocks 2010-09-29 12:54:05,574 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:54:05,574 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:54:05,575 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:54:05,575 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:54:05,590 DEBUG quick_subs database passes. 2010-09-29 12:54:05,591 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:54:05,591 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,592 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,592 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,592 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,592 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,593 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 12:23:51 2010-09-29 12:54:05,593 DEBUG quick_subs dd0: 268.983264 dd1: 271.516563 2010-09-29 12:54:05,594 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:54:05,594 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,594 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,594 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,594 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,595 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,595 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 12:23:51 2010-09-29 12:54:05,596 DEBUG quick_subs dd0: 268.983264 dd1: 271.516563 2010-09-29 12:54:05,596 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-09-29 12:54:05,596 DEBUG quick_adcp origdb_time_range is 2010/09/26 23:35:54 to 2010/09/29 12:23:51 2010-09-29 12:54:05,596 DEBUG quick_adcp (268.983264 to 271.516563) 2010-09-29 12:54:05,597 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-09-29 12:54:05,597 DEBUG quick_subs getting current (remaining after deletion) database times 2010-09-29 12:54:05,597 DEBUG quick_subs ['adcpdb/a_kn001.blk', 'adcpdb/a_kn004.blk', 'adcpdb/a_kn005.blk', 'adcpdb/a_kn006.blk', 'adcpdb/a_kn003.blk', 'adcpdb/a_kn002.blk', 'adcpdb/a_kndir.blk'] 2010-09-29 12:54:05,598 DEBUG quick_subs length is 7 2010-09-29 12:54:05,598 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:54:05,598 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:54:05,599 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:54:05,599 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:54:05,612 DEBUG quick_subs database passes. 2010-09-29 12:54:05,613 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:54:05,613 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,613 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,614 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,614 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,614 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,615 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 12:23:51 2010-09-29 12:54:05,615 DEBUG quick_subs dd0: 268.983264 dd1: 271.516563 2010-09-29 12:54:05,616 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,616 DEBUG quick_subs reading time range 2010-09-29 12:54:05,616 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 12:23:51 2010-09-29 12:54:05,616 DEBUG quick_subs dd0: 268.983264 dd1: 271.516563 2010-09-29 12:54:05,617 INFO quick_subs Wed Sep 29 12:54:05 2010 2010-09-29 12:54:05,617 INFO quick_subs checking database time range by listblk 2010-09-29 12:54:05,618 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:54:05,618 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:54:05,618 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:54:05,619 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:54:05,632 DEBUG quick_subs database passes. 2010-09-29 12:54:05,632 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:54:05,633 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,633 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,633 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,634 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,634 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,635 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 12:23:51 2010-09-29 12:54:05,635 DEBUG quick_subs dd0: 268.983264 dd1: 271.516563 2010-09-29 12:54:05,637 INFO quick_subs found line /* 0 n= 146 a_kn001.blk */ 2010/09/26 23:35:54 to 2010/09/27 11:44:59 2010-09-29 12:54:05,638 INFO quick_subs found line /* 1 n= 146 a_kn002.blk */ 2010/09/27 11:50:01 to 2010/09/27 23:58:50 2010-09-29 12:54:05,638 INFO quick_subs found line /* 2 n= 146 a_kn003.blk */ 2010/09/28 00:03:52 to 2010/09/28 12:16:51 2010-09-29 12:54:05,639 INFO quick_subs found line /* 3 n= 73 a_kn004.blk */ 2010/09/28 12:21:51 to 2010/09/28 18:22:10 2010-09-29 12:54:05,639 INFO quick_subs found line /* 4 n= 146 a_kn005.blk */ 2010/09/28 18:28:32 to 2010/09/29 06:42:15 2010-09-29 12:54:05,639 INFO quick_subs found line /* 5 n= 68 a_kn006.blk */ 2010/09/29 06:47:17 to 2010/09/29 12:23:51 2010-09-29 12:54:05,640 INFO quick_subs scan data start at 268.9797685 2010-09-29 12:54:05,640 INFO quick_subs scan time range: 2010/09/26 23:30:52 to 2010/09/29 12:49:47 2010-09-29 12:54:05,640 INFO quick_subs codasdb ends at 271.5165625 (2010/09/29 12:23:51) 2010-09-29 12:54:05,640 DEBUG quick_subs ... changed dirs, in /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,641 DEBUG quick_subs deleting these files: ['a_kn006.blk'] 2010-09-29 12:54:05,642 DEBUG quick_subs getting current (remaining after deletion) database times 2010-09-29 12:54:05,642 DEBUG quick_subs ['adcpdb/a_kn001.blk', 'adcpdb/a_kn004.blk', 'adcpdb/a_kn005.blk', 'adcpdb/a_kn003.blk', 'adcpdb/a_kn002.blk'] 2010-09-29 12:54:05,642 DEBUG quick_subs length is 5 2010-09-29 12:54:05,643 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:54:05,643 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:54:05,643 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:54:05,657 DEBUG quick_subs database passes. 2010-09-29 12:54:05,657 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:54:05,658 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,658 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,658 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,659 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,659 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,660 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 06:42:15 2010-09-29 12:54:05,660 DEBUG quick_subs dd0: 268.983264 dd1: 271.279340 2010-09-29 12:54:05,660 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,661 DEBUG quick_subs reading time range 2010-09-29 12:54:05,661 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 06:42:15 2010-09-29 12:54:05,661 DEBUG quick_subs dd0: 268.983264 dd1: 271.279340 2010-09-29 12:54:05,661 DEBUG quick_subs codas database currently goes from 2010/09/26 23:35:54 to 2010/09/29 06:42:15 2010-09-29 12:54:05,662 DEBUG quick_subs (268.983264 to 271.279340) 2010-09-29 12:54:05,662 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005 2010-09-29 12:54:05,664 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 2010-09-29 12:54:05,664 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005'] 2010-09-29 12:54:05,664 DEBUG quick_subs checked: unloaded blkstrs: ['006'] 2010-09-29 12:54:05,664 DEBUG quick_subs first unloaded file is load/ens_blk006.cmd 2010-09-29 12:54:05,666 DEBUG quick_subs data goes from 2010/09/29 06:47:17 to 2010/09/29 12:49:47 2010-09-29 12:54:05,666 DEBUG quick_subs (271.282836 to 271.534572) 2010-09-29 12:54:05,666 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/kn199_2b/raw/os75/kn2010_268_84646.raw /home/data/kn199_2b/raw/os75/kn2010_269_00000.raw /home/data/kn199_2b/raw/os75/kn2010_269_07200.raw /home/data/kn199_2b/raw/os75/kn2010_269_14400.raw /home/data/kn199_2b/raw/os75/kn2010_269_21600.raw /home/data/kn199_2b/raw/os75/kn2010_269_28800.raw /home/data/kn199_2b/raw/os75/kn2010_269_36000.raw /home/data/kn199_2b/raw/os75/kn2010_269_43200.raw /home/data/kn199_2b/raw/os75/kn2010_269_50400.raw /home/data/kn199_2b/raw/os75/kn2010_269_57600.raw /home/data/kn199_2b/raw/os75/kn2010_269_64800.raw /home/data/kn199_2b/raw/os75/kn2010_269_72000.raw /home/data/kn199_2b/raw/os75/kn2010_269_79200.raw /home/data/kn199_2b/raw/os75/kn2010_270_00000.raw /home/data/kn199_2b/raw/os75/kn2010_270_07200.raw /home/data/kn199_2b/raw/os75/kn2010_270_14400.raw /home/data/kn199_2b/raw/os75/kn2010_270_21600.raw /home/data/kn199_2b/raw/os75/kn2010_270_28800.raw /home/data/kn199_2b/raw/os75/kn2010_270_36000.raw /home/data/kn199_2b/raw/os75/kn2010_270_43200.raw /home/data/kn199_2b/raw/os75/kn2010_270_50400.raw /home/data/kn199_2b/raw/os75/kn2010_270_57600.raw /home/data/kn199_2b/raw/os75/kn2010_270_64800.raw /home/data/kn199_2b/raw/os75/kn2010_270_66201.raw /home/data/kn199_2b/raw/os75/kn2010_270_72000.raw /home/data/kn199_2b/raw/os75/kn2010_270_79200.raw /home/data/kn199_2b/raw/os75/kn2010_271_00000.raw /home/data/kn199_2b/raw/os75/kn2010_271_07200.raw /home/data/kn199_2b/raw/os75/kn2010_271_14400.raw /home/data/kn199_2b/raw/os75/kn2010_271_21600.raw /home/data/kn199_2b/raw/os75/kn2010_271_28800.raw /home/data/kn199_2b/raw/os75/kn2010_271_36000.raw /home/data/kn199_2b/raw/os75/kn2010_271_43200.raw 2010-09-29 12:54:05,666 INFO quick_run Wed Sep 29 12:54:05 2010 2010-09-29 12:54:05,667 INFO quick_run about to load uhdas files 2010-09-29 12:54:05,667 INFO quick_run /home/data/kn199_2b/raw/os75/kn2010_268_84646.raw /home/data/kn199_2b/raw/os75/kn2010_269_00000.raw /home/data/kn199_2b/raw/os75/kn2010_269_07200.raw /home/data/kn199_2b/raw/os75/kn2010_269_14400.raw /home/data/kn199_2b/raw/os75/kn2010_269_21600.raw /home/data/kn199_2b/raw/os75/kn2010_269_28800.raw /home/data/kn199_2b/raw/os75/kn2010_269_36000.raw /home/data/kn199_2b/raw/os75/kn2010_269_43200.raw /home/data/kn199_2b/raw/os75/kn2010_269_50400.raw /home/data/kn199_2b/raw/os75/kn2010_269_57600.raw /home/data/kn199_2b/raw/os75/kn2010_269_64800.raw /home/data/kn199_2b/raw/os75/kn2010_269_72000.raw /home/data/kn199_2b/raw/os75/kn2010_269_79200.raw /home/data/kn199_2b/raw/os75/kn2010_270_00000.raw /home/data/kn199_2b/raw/os75/kn2010_270_07200.raw /home/data/kn199_2b/raw/os75/kn2010_270_14400.raw /home/data/kn199_2b/raw/os75/kn2010_270_21600.raw /home/data/kn199_2b/raw/os75/kn2010_270_28800.raw /home/data/kn199_2b/raw/os75/kn2010_270_36000.raw /home/data/kn199_2b/raw/os75/kn2010_270_43200.raw /home/data/kn199_2b/raw/os75/kn2010_270_50400.raw /home/data/kn199_2b/raw/os75/kn2010_270_57600.raw /home/data/kn199_2b/raw/os75/kn2010_270_64800.raw /home/data/kn199_2b/raw/os75/kn2010_270_66201.raw /home/data/kn199_2b/raw/os75/kn2010_270_72000.raw /home/data/kn199_2b/raw/os75/kn2010_270_79200.raw /home/data/kn199_2b/raw/os75/kn2010_271_00000.raw /home/data/kn199_2b/raw/os75/kn2010_271_07200.raw /home/data/kn199_2b/raw/os75/kn2010_271_14400.raw /home/data/kn199_2b/raw/os75/kn2010_271_21600.raw /home/data/kn199_2b/raw/os75/kn2010_271_28800.raw /home/data/kn199_2b/raw/os75/kn2010_271_36000.raw /home/data/kn199_2b/raw/os75/kn2010_271_43200.raw 2010-09-29 12:54:05,667 DEBUG quick_setup load/ldcodas.tmp exists 2010-09-29 12:54:05,668 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,668 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/load 2010-09-29 12:54:05,668 DEBUG quick_setup running python command "ldcodas" 2010-09-29 12:54:05,668 DEBUG quick_subs in /home/data/kn199_2b/proc/os75bb/load 2010-09-29 12:54:05,669 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005'] 2010-09-29 12:54:05,669 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006'] 2010-09-29 12:54:05,671 DEBUG quick_subs starttime is 2010/09/29 06:47:17 2010-09-29 12:54:05,671 DEBUG quick_subs RESETTING thisload_time_range 2010-09-29 12:54:05,671 DEBUG quick_subs time range of data to be loaded: 2010/09/29 06:47:17 to 2010/09/29 12:49:47 2010-09-29 12:54:05,672 DEBUG quick_subs data startdd 271.282836 data enddd 271.534572 2010-09-29 12:54:05,672 DEBUG quick_subs about to load from these cmd files ['ens_blk006.cmd'] 2010-09-29 12:54:05,672 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_kn DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk006.cmd 2010-09-29 12:54:05,672 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-09-29 12:54:05,712 DEBUG quick_subs removing a_kndir.blk 2010-09-29 12:54:05,713 DEBUG quick_subs about to run mkblkdir 2010-09-29 12:54:05,713 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-29 12:54:05,713 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-29 12:54:05,727 DEBUG quick_subs database passes. 2010-09-29 12:54:05,727 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:54:05,728 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,728 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,728 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,728 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,729 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,729 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 12:49:03 2010-09-29 12:54:05,730 DEBUG quick_subs dd0: 268.983264 dd1: 271.534063 2010-09-29 12:54:05,730 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-09-29 12:54:05,730 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,730 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,731 DEBUG quick_setup running python command "get_time_range" 2010-09-29 12:54:05,731 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-29 12:54:05,731 DEBUG quick_subs extracting time range 2010-09-29 12:54:05,732 DEBUG quick_subs start_end_time 2010/09/26 23:35:54 to 2010/09/29 12:49:03 2010-09-29 12:54:05,732 DEBUG quick_subs dd0: 268.983264 dd1: 271.534063 2010-09-29 12:54:05,732 DEBUG quick_adcp loaded_time_range is 2010/09/26 23:35:54 to 2010/09/29 12:49:03 2010-09-29 12:54:05,733 DEBUG quick_adcp (268.983264 to 271.534063) 2010-09-29 12:54:05,733 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,733 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/adcpdb 2010-09-29 12:54:05,734 DEBUG quick_setup running python command "lst_conf" 2010-09-29 12:54:05,734 DEBUG quick_subs dbname: a_kn output: a_kn.cnh time_ranges: all 2010-09-29 12:54:05,734 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-09-29 12:54:05,748 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-09-29 12:54:05,749 DEBUG quick_run executing commands from /home/data/kn199_2b/proc/os75bb/edit 2010-09-29 12:54:05,749 DEBUG quick_run setup.m exists. not replacing 2010-09-29 12:54:05,749 DEBUG quick_run asetup.m exists. not replacing 2010-09-29 12:54:05,749 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-09-29 12:54:05,750 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-09-29 12:54:05,750 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,750 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/edit 2010-09-29 12:54:05,750 DEBUG quick_setup running python command "setflags" 2010-09-29 12:54:05,751 DEBUG quick_subs dbname: ../adcpdb/a_kn pg_min: 50 set_range_bit time_ranges: all 2010-09-29 12:54:05,751 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-09-29 12:54:05,776 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-09-29 12:54:05,776 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,776 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:05,777 DEBUG quick_setup running python command "catnav" 2010-09-29 12:54:05,779 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-09-29 12:54:05,779 DEBUG quick_run hcorr_inst is posmv 2010-09-29 12:54:05,780 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-09-29 12:54:05,780 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:05,780 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/cal/rotate 2010-09-29 12:54:05,780 DEBUG quick_setup running python command "lst_hdg" 2010-09-29 12:54:05,781 DEBUG quick_subs dbname: ../../adcpdb/a_kn output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-09-29 12:54:05,781 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-09-29 12:54:05,799 DEBUG quick_mpl Starting plot: hcorr 2010-09-29 12:54:05,828 DEBUG quick_mplplots found 2.550804 days of data 2010-09-29 12:54:05,828 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-09-29 12:54:05,828 DEBUG quick_mplplots printing 1 pages 2010-09-29 12:54:06,772 DEBUG quick_mpl Ending plot: hcorr 2010-09-29 12:54:06,773 DEBUG quick_run ------------ step 7: rotate ------------- 2010-09-29 12:54:06,773 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:06,773 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/cal/rotate 2010-09-29 12:54:06,773 DEBUG quick_setup running python command "rotated" 2010-09-29 12:54:06,785 DEBUG quick_subs last rotated time from log file: 2010/09/29 12:23:57 2010-09-29 12:54:06,786 DEBUG quick_subs time range of currently loaded data: 2010/09/26 23:35:54 to 2010/09/29 12:49:03 2010-09-29 12:54:06,786 DEBUG quick_subs (268.983264 to 271.534063) 2010-09-29 12:54:06,787 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-09-29 12:54:06,787 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:06,787 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/cal/rotate 2010-09-29 12:54:06,788 DEBUG quick_setup running python command "rotate" 2010-09-29 12:54:06,788 DEBUG quick_subs DB_NAME: ../../adcpdb/a_kn LOG_FILE: rotate.log TIME_RANGE: 2010/09/29 06:47:17 to 2010/09/29 12:49:47 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-09-29 12:54:06,788 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-09-29 12:54:06,797 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-09-29 12:54:06,798 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-29 12:54:06,798 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:06,798 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:06,799 DEBUG quick_setup running python command "as_nav" 2010-09-29 12:54:06,799 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/26 23:35:54 to 2010/09/29 12:49:03 /* the whole time range */ 2010-09-29 12:54:06,799 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-29 12:54:06,829 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-09-29 12:54:06,830 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:06,830 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:06,830 DEBUG quick_setup running python command "refabs" 2010-09-29 12:54:06,831 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.nav fix_file: a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-09-29 12:54:06,831 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-09-29 12:54:06,855 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-09-29 12:54:06,856 DEBUG quick_setup nav/smoothr.tmp exists 2010-09-29 12:54:06,856 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:06,856 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:06,857 DEBUG quick_setup running python command "smoothr" 2010-09-29 12:54:06,857 DEBUG quick_subs reference_file: a_kn.nav refabs_output: a_kn.ref output: a_kn.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-09-29 12:54:06,857 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-09-29 12:54:06,940 DEBUG quick_adcp about to run numpy refsm 2010-09-29 12:54:06,941 DEBUG quick_npy Starting: refsm 2010-09-29 12:54:07,024 INFO nav dtmin = -0.50 dtmax = 0.50 2010-09-29 12:54:07,227 DEBUG quick_npy Ending: refsm 2010-09-29 12:54:07,227 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-09-29 12:54:07,227 DEBUG quick_setup nav/putnav.tmp exists 2010-09-29 12:54:07,228 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:07,228 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:07,228 DEBUG quick_setup running python command "putnav" 2010-09-29 12:54:07,228 DEBUG quick_subs dbname: ../adcpdb/a_kn position_file: a_kn_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-09-29 12:54:07,229 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-09-29 12:54:07,260 DEBUG quick_adcp plotting navigation 2010-09-29 12:54:07,260 DEBUG quick_mpl Starting plot: nav 2010-09-29 12:54:08,067 DEBUG quick_mpl Ending plot: nav 2010-09-29 12:54:08,068 DEBUG quick_mpl Starting plot: refl 2010-09-29 12:54:08,129 DEBUG quick_mplplots found 2.543826 days of data 2010-09-29 12:54:08,129 DEBUG quick_mplplots start day is 268.000000 2010-09-29 12:54:08,130 DEBUG quick_mplplots figures with 2.000000 days per page 2010-09-29 12:54:08,130 DEBUG quick_mplplots printing 2 pages 2010-09-29 12:54:08,130 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-09-29 12:54:08,130 INFO quick_mplplots startdd is 268.0 2010-09-29 12:54:08,130 INFO quick_mplplots dt is 2.0 2010-09-29 12:54:10,717 DEBUG quick_mpl Ending plot: refl 2010-09-29 12:54:10,718 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-09-29 12:54:10,718 DEBUG quick_run find profile flags ------------ *** ------------- 2010-09-29 12:54:10,718 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:10,718 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/edit 2010-09-29 12:54:10,719 DEBUG quick_setup running python command "aedit" 2010-09-29 12:54:12,636 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-09-29 12:54:12,636 DEBUG quick_run starting in: /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:12,636 DEBUG quick_run executing commands from: edit 2010-09-29 12:54:12,640 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_kn abottom_tmp.asc 2010-09-29 12:54:12,651 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_kn abadprf_tmp.asc 2010-09-29 12:54:12,660 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_kn abadbin_tmp.asc 2010-09-29 12:54:12,672 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_kn 30 2010-09-29 12:54:12,682 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-09-29 12:54:12,706 DEBUG quick_run changing directories back to /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:12,706 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-09-29 12:54:12,707 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-09-29 12:54:12,707 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-29 12:54:12,708 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:12,708 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:12,708 DEBUG quick_setup running python command "as_nav" 2010-09-29 12:54:12,708 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/26 23:35:54 to 2010/09/29 12:49:03 /* the whole time range */ 2010-09-29 12:54:12,709 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-29 12:54:12,739 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-09-29 12:54:12,739 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:12,740 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:12,740 DEBUG quick_setup running python command "refabs" 2010-09-29 12:54:12,740 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.nav fix_file: a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-09-29 12:54:12,741 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-09-29 12:54:12,766 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-09-29 12:54:12,766 DEBUG quick_setup nav/smoothr.tmp exists 2010-09-29 12:54:12,767 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:12,767 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:12,767 DEBUG quick_setup running python command "smoothr" 2010-09-29 12:54:12,768 DEBUG quick_subs reference_file: a_kn.nav refabs_output: a_kn.ref output: a_kn.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-09-29 12:54:12,768 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-09-29 12:54:12,860 DEBUG quick_adcp running refsm 2010-09-29 12:54:12,861 DEBUG quick_npy Starting: refsm 2010-09-29 12:54:12,944 INFO nav dtmin = -0.50 dtmax = 0.50 2010-09-29 12:54:13,076 DEBUG quick_npy Ending: refsm 2010-09-29 12:54:13,077 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-09-29 12:54:13,077 DEBUG quick_setup nav/putnav.tmp exists 2010-09-29 12:54:13,077 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:13,077 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:13,078 DEBUG quick_setup running python command "putnav" 2010-09-29 12:54:13,078 DEBUG quick_subs dbname: ../adcpdb/a_kn position_file: a_kn_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-09-29 12:54:13,078 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-09-29 12:54:13,108 DEBUG quick_mpl Starting plot: nav 2010-09-29 12:54:14,166 DEBUG quick_mpl Ending plot: nav 2010-09-29 12:54:14,167 DEBUG quick_mpl Starting plot: refl 2010-09-29 12:54:14,311 DEBUG quick_mplplots found 2.543826 days of data 2010-09-29 12:54:14,311 DEBUG quick_mplplots start day is 268.000000 2010-09-29 12:54:14,311 DEBUG quick_mplplots figures with 2.000000 days per page 2010-09-29 12:54:14,314 DEBUG quick_mplplots printing 2 pages 2010-09-29 12:54:14,314 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-09-29 12:54:14,315 INFO quick_mplplots startdd is 268.0 2010-09-29 12:54:14,315 INFO quick_mplplots dt is 2.0 2010-09-29 12:54:16,450 DEBUG quick_mpl Ending plot: refl 2010-09-29 12:54:16,451 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-09-29 12:54:16,451 DEBUG quick_setup edit/lst_temp.tmp exists 2010-09-29 12:54:16,452 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:16,452 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/edit 2010-09-29 12:54:16,452 DEBUG quick_setup running python command "lst_temp" 2010-09-29 12:54:16,452 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn.tem step_size= 1 year_base= 2010 time_ranges: all 2010-09-29 12:54:16,453 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-09-29 12:54:16,473 DEBUG quick_mpl Starting plot: temp 2010-09-29 12:54:16,494 DEBUG quick_mplplots plotting 730 points 2010-09-29 12:54:17,097 DEBUG quick_mpl Ending plot: temp 2010-09-29 12:54:17,098 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-09-29 12:54:17,098 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-09-29 12:54:17,098 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:17,099 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/cal/botmtrk 2010-09-29 12:54:17,099 DEBUG quick_setup running python command "lst_btrk" 2010-09-29 12:54:17,099 DEBUG quick_subs dbname: ../../adcpdb/a_kn output: a_kn.btm step_size= 1 year_base= 2010 time_ranges: 2010/09/26 23:35:54 to 2010/09/29 12:49:03 /* whole time range */ 2010-09-29 12:54:17,099 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-09-29 12:54:17,112 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-09-29 12:54:17,112 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:17,112 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/cal/botmtrk 2010-09-29 12:54:17,113 DEBUG quick_setup running python command "refabsbt" 2010-09-29 12:54:17,113 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.btm fix_file: ../../nav/a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-09-29 12:54:17,113 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-09-29 12:54:17,121 DEBUG quick_mpl Starting plot: btcal 2010-09-29 12:54:17,122 DEBUG quick_mplplots No data in a_kn.btm 2010-09-29 12:54:17,123 DEBUG quick_mplplots Returning from Btplot with no output 2010-09-29 12:54:17,123 DEBUG quick_mpl Ending plot: btcal 2010-09-29 12:54:17,123 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-29 12:54:17,124 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:17,124 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/nav 2010-09-29 12:54:17,124 DEBUG quick_setup running python command "as_nav" 2010-09-29 12:54:17,125 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/26 23:35:54 to 2010/09/29 12:49:03 /* the whole time range */ 2010-09-29 12:54:17,125 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-29 12:54:17,156 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-09-29 12:54:17,157 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:17,157 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/cal/watertrk 2010-09-29 12:54:17,158 DEBUG quick_setup running python command "timslip" 2010-09-29 12:54:17,158 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_kn.gps reference_file: ../../nav/a_kn.nav output_file: a_kn_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-09-29 12:54:17,158 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-09-29 12:54:17,175 DEBUG quick_mpl Starting plot: wtcal 2010-09-29 12:54:17,180 DEBUG quick_mplplots Found 41 calibration points 2010-09-29 12:54:19,488 DEBUG quick_mpl Ending plot: wtcal 2010-09-29 12:54:19,489 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-09-29 12:54:19,489 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:19,491 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/vector 2010-09-29 12:54:19,492 DEBUG quick_setup running python command "timegrid" 2010-09-29 12:54:19,492 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_kn.tmp 2010-09-29 12:54:19,510 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:19,511 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/vector 2010-09-29 12:54:19,511 DEBUG quick_setup running python command "as_vect" 2010-09-29 12:54:19,513 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-09-29 12:54:19,608 DEBUG quick_asect done making vector matfiles 2010-09-29 12:54:19,609 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:19,609 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/contour 2010-09-29 12:54:19,610 DEBUG quick_setup running python command "timegrid" 2010-09-29 12:54:19,610 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_kn.tmp 2010-09-29 12:54:19,627 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:19,630 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/contour 2010-09-29 12:54:19,630 DEBUG quick_setup running python command "as_cont" 2010-09-29 12:54:19,634 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-09-29 12:54:19,739 DEBUG quick_setup starting in /home/data/kn199_2b/proc/os75bb 2010-09-29 12:54:19,739 DEBUG quick_setup executing commands from /home/data/kn199_2b/proc/os75bb/contour 2010-09-29 12:54:19,740 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_kn 2010-09-29 12:54:19,885 DEBUG quick_asect done running getmat with "allbins" 2010-09-29 12:54:19,952 INFO root copying NOFIG to /home/adcp/www/figures/os75bb_hcorr_plot.png 2010-09-29 12:54:19,953 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75bb_hcorr_plot_thumb.png 2010-09-29 12:54:19,953 DEBUG root matfile is contour/contour_uv.mat 2010-09-29 12:54:19,956 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75bb_cont_uv.mat 2010-09-29 12:54:19,956 DEBUG root matfile is vector/vector_uv.mat 2010-09-29 12:54:19,957 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75bb_vect_uv.mat 2010-09-29 12:54:19,957 DEBUG root matfile is contour/contour_xy.mat 2010-09-29 12:54:19,958 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75bb_cont_xy.mat 2010-09-29 12:54:19,958 DEBUG root matfile is vector/vector_xy.mat 2010-09-29 12:54:19,986 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75bb_vect_xy.mat 2010-09-29 12:54:19,987 DEBUG root about to copy file edit/a_kn.tem to /home/adcp/www/data/os75bb_temp.asc 2010-09-29 12:54:19,988 INFO root copying edit/a_kn.tem to /home/adcp/www/data/os75bb_temp.asc 2010-09-29 12:54:19,988 INFO root Ending quick_adcp.py 2010-09-29 12:54:20,067 DEBUG quick_setup killed matlab engine