2010-08-14 11:56:30,849 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase kn198 --cruisename kn198 --instclass os --instname os75 --dbname a_kn --datatype uhdas --datadir /home/data/kn198/raw/os75 --cfgpath /home/data/kn198/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 --npycalc all --mplplots all 2010-08-14 11:56:30,850 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2010-08-14 11:56:30,854 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-08-14 11:56:30,854 DEBUG quick_adcp progdir = /home/currents/programs 2010-08-14 11:56:30,855 DEBUG quick_adcp binos = lnx 2010-08-14 11:56:30,855 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-08-14 11:56:30,855 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-08-14 11:56:30,855 DEBUG quick_setup numpy calculations to run: refsm 2010-08-14 11:56:30,856 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-08-14 11:56:30,856 DEBUG quick_setup processing data logged with uhdas: 2010-08-14 11:56:30,856 DEBUG quick_setup datatype is uhdas 2010-08-14 11:56:30,857 DEBUG quick_setup pingtype is nb 2010-08-14 11:56:30,857 DEBUG quick_setup instclass is os 2010-08-14 11:56:30,857 DEBUG quick_setup no post-processing heading correction will be used 2010-08-14 11:56:30,857 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-08-14 11:56:30,880 DEBUG quick_setup found (in edit/asetup.m): 2010-08-14 11:56:30,880 DEBUG quick_setup config.beamangle is 30 2010-08-14 11:56:30,880 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'kn198',... 'cfgpath' , '/home/data/kn198/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-08-14 11:56:30,880 DEBUG quick_setup ------- starting Matlab engine ------- 2010-08-14 11:56:30,881 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-08-14 11:56:30,887 DEBUG call_matlab starting to wait for initial prompt 2010-08-14 11:56:32,091 DEBUG call_matlab received initial prompt 2010-08-14 11:56:32,339 DEBUG quick_adcp cwd is /home/data/kn198/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-08-14 11:56:32,339 DEBUG quick_adcp original fix file is a_kn.gps 2010-08-14 11:56:32,340 DEBUG quick_adcp smoothed nav file is a_kn_refsm.asc 2010-08-14 11:56:32,340 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-08-14 11:56:32,362 DEBUG quick_subs found 89 files using wildcard expansion from "/home/data/kn198/raw/os75/*.raw" 2010-08-14 11:56:32,363 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/kn198/raw/os75/kn2010_217_65982.raw /home/data/kn198/raw/os75/kn2010_217_72000.raw /home/data/kn198/raw/os75/kn2010_217_79200.raw /home/data/kn198/raw/os75/kn2010_218_00000.raw /home/data/kn198/raw/os75/kn2010_218_07200.raw /home/data/kn198/raw/os75/kn2010_218_14400.raw /home/data/kn198/raw/os75/kn2010_218_21600.raw /home/data/kn198/raw/os75/kn2010_218_28800.raw /home/data/kn198/raw/os75/kn2010_218_36000.raw /home/data/kn198/raw/os75/kn2010_218_43200.raw /home/data/kn198/raw/os75/kn2010_218_50400.raw /home/data/kn198/raw/os75/kn2010_218_57600.raw /home/data/kn198/raw/os75/kn2010_218_64800.raw /home/data/kn198/raw/os75/kn2010_218_72000.raw /home/data/kn198/raw/os75/kn2010_218_79200.raw /home/data/kn198/raw/os75/kn2010_219_35687.raw /home/data/kn198/raw/os75/kn2010_219_36000.raw /home/data/kn198/raw/os75/kn2010_219_43200.raw /home/data/kn198/raw/os75/kn2010_219_50400.raw /home/data/kn198/raw/os75/kn2010_219_57600.raw /home/data/kn198/raw/os75/kn2010_219_64800.raw /home/data/kn198/raw/os75/kn2010_219_72000.raw /home/data/kn198/raw/os75/kn2010_219_79200.raw /home/data/kn198/raw/os75/kn2010_220_00000.raw /home/data/kn198/raw/os75/kn2010_220_07200.raw /home/data/kn198/raw/os75/kn2010_220_14400.raw /home/data/kn198/raw/os75/kn2010_220_21600.raw /home/data/kn198/raw/os75/kn2010_220_28800.raw /home/data/kn198/raw/os75/kn2010_220_36000.raw /home/data/kn198/raw/os75/kn2010_220_43200.raw /home/data/kn198/raw/os75/kn2010_220_50400.raw /home/data/kn198/raw/os75/kn2010_220_57600.raw /home/data/kn198/raw/os75/kn2010_220_64800.raw /home/data/kn198/raw/os75/kn2010_220_72000.raw /home/data/kn198/raw/os75/kn2010_220_79200.raw /home/data/kn198/raw/os75/kn2010_221_00000.raw /home/data/kn198/raw/os75/kn2010_221_07200.raw /home/data/kn198/raw/os75/kn2010_221_14400.raw /home/data/kn198/raw/os75/kn2010_221_21600.raw /home/data/kn198/raw/os75/kn2010_221_28800.raw /home/data/kn198/raw/os75/kn2010_221_36000.raw /home/data/kn198/raw/os75/kn2010_221_43200.raw /home/data/kn198/raw/os75/kn2010_221_50400.raw /home/data/kn198/raw/os75/kn2010_221_57600.raw /home/data/kn198/raw/os75/kn2010_221_64800.raw /home/data/kn198/raw/os75/kn2010_221_72000.raw /home/data/kn198/raw/os75/kn2010_221_79200.raw /home/data/kn198/raw/os75/kn2010_222_00000.raw /home/data/kn198/raw/os75/kn2010_222_07200.raw /home/data/kn198/raw/os75/kn2010_222_14400.raw /home/data/kn198/raw/os75/kn2010_222_21600.raw /home/data/kn198/raw/os75/kn2010_222_28800.raw /home/data/kn198/raw/os75/kn2010_222_36000.raw /home/data/kn198/raw/os75/kn2010_222_43200.raw /home/data/kn198/raw/os75/kn2010_222_50400.raw /home/data/kn198/raw/os75/kn2010_222_57600.raw /home/data/kn198/raw/os75/kn2010_222_64800.raw /home/data/kn198/raw/os75/kn2010_222_72000.raw /home/data/kn198/raw/os75/kn2010_222_79200.raw /home/data/kn198/raw/os75/kn2010_223_00000.raw /home/data/kn198/raw/os75/kn2010_223_07200.raw /home/data/kn198/raw/os75/kn2010_223_14400.raw /home/data/kn198/raw/os75/kn2010_223_21600.raw /home/data/kn198/raw/os75/kn2010_223_28800.raw /home/data/kn198/raw/os75/kn2010_223_36000.raw /home/data/kn198/raw/os75/kn2010_223_43200.raw /home/data/kn198/raw/os75/kn2010_223_50400.raw /home/data/kn198/raw/os75/kn2010_223_57600.raw /home/data/kn198/raw/os75/kn2010_223_64800.raw /home/data/kn198/raw/os75/kn2010_223_72000.raw /home/data/kn198/raw/os75/kn2010_223_79200.raw /home/data/kn198/raw/os75/kn2010_224_00000.raw /home/data/kn198/raw/os75/kn2010_224_07200.raw /home/data/kn198/raw/os75/kn2010_224_14400.raw /home/data/kn198/raw/os75/kn2010_224_21600.raw /home/data/kn198/raw/os75/kn2010_224_28800.raw /home/data/kn198/raw/os75/kn2010_224_36000.raw /home/data/kn198/raw/os75/kn2010_224_43200.raw /home/data/kn198/raw/os75/kn2010_224_50400.raw /home/data/kn198/raw/os75/kn2010_224_57600.raw /home/data/kn198/raw/os75/kn2010_224_64800.raw /home/data/kn198/raw/os75/kn2010_224_72000.raw /home/data/kn198/raw/os75/kn2010_224_79200.raw /home/data/kn198/raw/os75/kn2010_225_00000.raw /home/data/kn198/raw/os75/kn2010_225_07200.raw /home/data/kn198/raw/os75/kn2010_225_14400.raw /home/data/kn198/raw/os75/kn2010_225_21600.raw /home/data/kn198/raw/os75/kn2010_225_28800.raw /home/data/kn198/raw/os75/kn2010_225_36000.raw 2010-08-14 11:56:32,363 DEBUG quick_adcp LASTFILES invoked. using only 89 files from end of filelist 2010-08-14 11:56:32,364 DEBUG quick_adcp using delblks = 1 2010-08-14 11:56:32,364 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/kn198/raw/os75/kn2010_217_65982.raw /home/data/kn198/raw/os75/kn2010_217_72000.raw /home/data/kn198/raw/os75/kn2010_217_79200.raw /home/data/kn198/raw/os75/kn2010_218_00000.raw /home/data/kn198/raw/os75/kn2010_218_07200.raw /home/data/kn198/raw/os75/kn2010_218_14400.raw /home/data/kn198/raw/os75/kn2010_218_21600.raw /home/data/kn198/raw/os75/kn2010_218_28800.raw /home/data/kn198/raw/os75/kn2010_218_36000.raw /home/data/kn198/raw/os75/kn2010_218_43200.raw /home/data/kn198/raw/os75/kn2010_218_50400.raw /home/data/kn198/raw/os75/kn2010_218_57600.raw /home/data/kn198/raw/os75/kn2010_218_64800.raw /home/data/kn198/raw/os75/kn2010_218_72000.raw /home/data/kn198/raw/os75/kn2010_218_79200.raw /home/data/kn198/raw/os75/kn2010_219_35687.raw /home/data/kn198/raw/os75/kn2010_219_36000.raw /home/data/kn198/raw/os75/kn2010_219_43200.raw /home/data/kn198/raw/os75/kn2010_219_50400.raw /home/data/kn198/raw/os75/kn2010_219_57600.raw /home/data/kn198/raw/os75/kn2010_219_64800.raw /home/data/kn198/raw/os75/kn2010_219_72000.raw /home/data/kn198/raw/os75/kn2010_219_79200.raw /home/data/kn198/raw/os75/kn2010_220_00000.raw /home/data/kn198/raw/os75/kn2010_220_07200.raw /home/data/kn198/raw/os75/kn2010_220_14400.raw /home/data/kn198/raw/os75/kn2010_220_21600.raw /home/data/kn198/raw/os75/kn2010_220_28800.raw /home/data/kn198/raw/os75/kn2010_220_36000.raw /home/data/kn198/raw/os75/kn2010_220_43200.raw /home/data/kn198/raw/os75/kn2010_220_50400.raw /home/data/kn198/raw/os75/kn2010_220_57600.raw /home/data/kn198/raw/os75/kn2010_220_64800.raw /home/data/kn198/raw/os75/kn2010_220_72000.raw /home/data/kn198/raw/os75/kn2010_220_79200.raw /home/data/kn198/raw/os75/kn2010_221_00000.raw /home/data/kn198/raw/os75/kn2010_221_07200.raw /home/data/kn198/raw/os75/kn2010_221_14400.raw /home/data/kn198/raw/os75/kn2010_221_21600.raw /home/data/kn198/raw/os75/kn2010_221_28800.raw /home/data/kn198/raw/os75/kn2010_221_36000.raw /home/data/kn198/raw/os75/kn2010_221_43200.raw /home/data/kn198/raw/os75/kn2010_221_50400.raw /home/data/kn198/raw/os75/kn2010_221_57600.raw /home/data/kn198/raw/os75/kn2010_221_64800.raw /home/data/kn198/raw/os75/kn2010_221_72000.raw /home/data/kn198/raw/os75/kn2010_221_79200.raw /home/data/kn198/raw/os75/kn2010_222_00000.raw /home/data/kn198/raw/os75/kn2010_222_07200.raw /home/data/kn198/raw/os75/kn2010_222_14400.raw /home/data/kn198/raw/os75/kn2010_222_21600.raw /home/data/kn198/raw/os75/kn2010_222_28800.raw /home/data/kn198/raw/os75/kn2010_222_36000.raw /home/data/kn198/raw/os75/kn2010_222_43200.raw /home/data/kn198/raw/os75/kn2010_222_50400.raw /home/data/kn198/raw/os75/kn2010_222_57600.raw /home/data/kn198/raw/os75/kn2010_222_64800.raw /home/data/kn198/raw/os75/kn2010_222_72000.raw /home/data/kn198/raw/os75/kn2010_222_79200.raw /home/data/kn198/raw/os75/kn2010_223_00000.raw /home/data/kn198/raw/os75/kn2010_223_07200.raw /home/data/kn198/raw/os75/kn2010_223_14400.raw /home/data/kn198/raw/os75/kn2010_223_21600.raw /home/data/kn198/raw/os75/kn2010_223_28800.raw /home/data/kn198/raw/os75/kn2010_223_36000.raw /home/data/kn198/raw/os75/kn2010_223_43200.raw /home/data/kn198/raw/os75/kn2010_223_50400.raw /home/data/kn198/raw/os75/kn2010_223_57600.raw /home/data/kn198/raw/os75/kn2010_223_64800.raw /home/data/kn198/raw/os75/kn2010_223_72000.raw /home/data/kn198/raw/os75/kn2010_223_79200.raw /home/data/kn198/raw/os75/kn2010_224_00000.raw /home/data/kn198/raw/os75/kn2010_224_07200.raw /home/data/kn198/raw/os75/kn2010_224_14400.raw /home/data/kn198/raw/os75/kn2010_224_21600.raw /home/data/kn198/raw/os75/kn2010_224_28800.raw /home/data/kn198/raw/os75/kn2010_224_36000.raw /home/data/kn198/raw/os75/kn2010_224_43200.raw /home/data/kn198/raw/os75/kn2010_224_50400.raw /home/data/kn198/raw/os75/kn2010_224_57600.raw /home/data/kn198/raw/os75/kn2010_224_64800.raw /home/data/kn198/raw/os75/kn2010_224_72000.raw /home/data/kn198/raw/os75/kn2010_224_79200.raw /home/data/kn198/raw/os75/kn2010_225_00000.raw /home/data/kn198/raw/os75/kn2010_225_07200.raw /home/data/kn198/raw/os75/kn2010_225_14400.raw /home/data/kn198/raw/os75/kn2010_225_21600.raw /home/data/kn198/raw/os75/kn2010_225_28800.raw /home/data/kn198/raw/os75/kn2010_225_36000.raw 2010-08-14 11:56:32,366 DEBUG quick_adcp Sat Aug 14 11:56:32 2010 running quick_adcp.py as follows: --cntfile /home/data/kn198/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_kn cbasename contour dbname a_kn dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 29 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_kn allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase kn198 cfgpath /home/data/kn198/proc/os75nb/config cntfile /home/data/kn198/proc/os75nb/os75nb_qpy.cnt commands None cruisename kn198 data_def vmadcp.def datadir /home/data/kn198/raw/os75 datafile_glob *.raw datatype uhdas dbname a_kn dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/kn198/raw/os75/kn2010_217_65982.raw', '/home/data/kn198/raw/os75/kn2010_217_72000.raw', '/home/data/kn198/raw/os75/kn2010_217_79200.raw', '/home/data/kn198/raw/os75/kn2010_218_00000.raw', '/home/data/kn198/raw/os75/kn2010_218_07200.raw', '/home/data/kn198/raw/os75/kn2010_218_14400.raw', '/home/data/kn198/raw/os75/kn2010_218_21600.raw', '/home/data/kn198/raw/os75/kn2010_218_28800.raw', '/home/data/kn198/raw/os75/kn2010_218_36000.raw', '/home/data/kn198/raw/os75/kn2010_218_43200.raw', '/home/data/kn198/raw/os75/kn2010_218_50400.raw', '/home/data/kn198/raw/os75/kn2010_218_57600.raw', '/home/data/kn198/raw/os75/kn2010_218_64800.raw', '/home/data/kn198/raw/os75/kn2010_218_72000.raw', '/home/data/kn198/raw/os75/kn2010_218_79200.raw', '/home/data/kn198/raw/os75/kn2010_219_35687.raw', '/home/data/kn198/raw/os75/kn2010_219_36000.raw', '/home/data/kn198/raw/os75/kn2010_219_43200.raw', '/home/data/kn198/raw/os75/kn2010_219_50400.raw', '/home/data/kn198/raw/os75/kn2010_219_57600.raw', '/home/data/kn198/raw/os75/kn2010_219_64800.raw', '/home/data/kn198/raw/os75/kn2010_219_72000.raw', '/home/data/kn198/raw/os75/kn2010_219_79200.raw', '/home/data/kn198/raw/os75/kn2010_220_00000.raw', '/home/data/kn198/raw/os75/kn2010_220_07200.raw', '/home/data/kn198/raw/os75/kn2010_220_14400.raw', '/home/data/kn198/raw/os75/kn2010_220_21600.raw', '/home/data/kn198/raw/os75/kn2010_220_28800.raw', '/home/data/kn198/raw/os75/kn2010_220_36000.raw', '/home/data/kn198/raw/os75/kn2010_220_43200.raw', '/home/data/kn198/raw/os75/kn2010_220_50400.raw', '/home/data/kn198/raw/os75/kn2010_220_57600.raw', '/home/data/kn198/raw/os75/kn2010_220_64800.raw', '/home/data/kn198/raw/os75/kn2010_220_72000.raw', '/home/data/kn198/raw/os75/kn2010_220_79200.raw', '/home/data/kn198/raw/os75/kn2010_221_00000.raw', '/home/data/kn198/raw/os75/kn2010_221_07200.raw', '/home/data/kn198/raw/os75/kn2010_221_14400.raw', '/home/data/kn198/raw/os75/kn2010_221_21600.raw', '/home/data/kn198/raw/os75/kn2010_221_28800.raw', '/home/data/kn198/raw/os75/kn2010_221_36000.raw', '/home/data/kn198/raw/os75/kn2010_221_43200.raw', '/home/data/kn198/raw/os75/kn2010_221_50400.raw', '/home/data/kn198/raw/os75/kn2010_221_57600.raw', '/home/data/kn198/raw/os75/kn2010_221_64800.raw', '/home/data/kn198/raw/os75/kn2010_221_72000.raw', '/home/data/kn198/raw/os75/kn2010_221_79200.raw', '/home/data/kn198/raw/os75/kn2010_222_00000.raw', '/home/data/kn198/raw/os75/kn2010_222_07200.raw', '/home/data/kn198/raw/os75/kn2010_222_14400.raw', '/home/data/kn198/raw/os75/kn2010_222_21600.raw', '/home/data/kn198/raw/os75/kn2010_222_28800.raw', '/home/data/kn198/raw/os75/kn2010_222_36000.raw', '/home/data/kn198/raw/os75/kn2010_222_43200.raw', '/home/data/kn198/raw/os75/kn2010_222_50400.raw', '/home/data/kn198/raw/os75/kn2010_222_57600.raw', '/home/data/kn198/raw/os75/kn2010_222_64800.raw', '/home/data/kn198/raw/os75/kn2010_222_72000.raw', '/home/data/kn198/raw/os75/kn2010_222_79200.raw', '/home/data/kn198/raw/os75/kn2010_223_00000.raw', '/home/data/kn198/raw/os75/kn2010_223_07200.raw', '/home/data/kn198/raw/os75/kn2010_223_14400.raw', '/home/data/kn198/raw/os75/kn2010_223_21600.raw', '/home/data/kn198/raw/os75/kn2010_223_28800.raw', '/home/data/kn198/raw/os75/kn2010_223_36000.raw', '/home/data/kn198/raw/os75/kn2010_223_43200.raw', '/home/data/kn198/raw/os75/kn2010_223_50400.raw', '/home/data/kn198/raw/os75/kn2010_223_57600.raw', '/home/data/kn198/raw/os75/kn2010_223_64800.raw', '/home/data/kn198/raw/os75/kn2010_223_72000.raw', '/home/data/kn198/raw/os75/kn2010_223_79200.raw', '/home/data/kn198/raw/os75/kn2010_224_00000.raw', '/home/data/kn198/raw/os75/kn2010_224_07200.raw', '/home/data/kn198/raw/os75/kn2010_224_14400.raw', '/home/data/kn198/raw/os75/kn2010_224_21600.raw', '/home/data/kn198/raw/os75/kn2010_224_28800.raw', '/home/data/kn198/raw/os75/kn2010_224_36000.raw', '/home/data/kn198/raw/os75/kn2010_224_43200.raw', '/home/data/kn198/raw/os75/kn2010_224_50400.raw', '/home/data/kn198/raw/os75/kn2010_224_57600.raw', '/home/data/kn198/raw/os75/kn2010_224_64800.raw', '/home/data/kn198/raw/os75/kn2010_224_72000.raw', '/home/data/kn198/raw/os75/kn2010_224_79200.raw', '/home/data/kn198/raw/os75/kn2010_225_00000.raw', '/home/data/kn198/raw/os75/kn2010_225_07200.raw', '/home/data/kn198/raw/os75/kn2010_225_14400.raw', '/home/data/kn198/raw/os75/kn2010_225_21600.raw', '/home/data/kn198/raw/os75/kn2010_225_28800.raw', '/home/data/kn198/raw/os75/kn2010_225_36000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 29 fixfile a_kn.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'kn198',... 'cfgpath' , '/home/data/kn198/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_kn.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2010 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/kn198/raw/os75/kn2010_217_65982.raw', '/home/data/kn198/raw/os75/kn2010_217_72000.raw', '/home/data/kn198/raw/os75/kn2010_217_79200.raw', '/home/data/kn198/raw/os75/kn2010_218_00000.raw', '/home/data/kn198/raw/os75/kn2010_218_07200.raw', '/home/data/kn198/raw/os75/kn2010_218_14400.raw', '/home/data/kn198/raw/os75/kn2010_218_21600.raw', '/home/data/kn198/raw/os75/kn2010_218_28800.raw', '/home/data/kn198/raw/os75/kn2010_218_36000.raw', '/home/data/kn198/raw/os75/kn2010_218_43200.raw', '/home/data/kn198/raw/os75/kn2010_218_50400.raw', '/home/data/kn198/raw/os75/kn2010_218_57600.raw', '/home/data/kn198/raw/os75/kn2010_218_64800.raw', '/home/data/kn198/raw/os75/kn2010_218_72000.raw', '/home/data/kn198/raw/os75/kn2010_218_79200.raw', '/home/data/kn198/raw/os75/kn2010_219_35687.raw', '/home/data/kn198/raw/os75/kn2010_219_36000.raw', '/home/data/kn198/raw/os75/kn2010_219_43200.raw', '/home/data/kn198/raw/os75/kn2010_219_50400.raw', '/home/data/kn198/raw/os75/kn2010_219_57600.raw', '/home/data/kn198/raw/os75/kn2010_219_64800.raw', '/home/data/kn198/raw/os75/kn2010_219_72000.raw', '/home/data/kn198/raw/os75/kn2010_219_79200.raw', '/home/data/kn198/raw/os75/kn2010_220_00000.raw', '/home/data/kn198/raw/os75/kn2010_220_07200.raw', '/home/data/kn198/raw/os75/kn2010_220_14400.raw', '/home/data/kn198/raw/os75/kn2010_220_21600.raw', '/home/data/kn198/raw/os75/kn2010_220_28800.raw', '/home/data/kn198/raw/os75/kn2010_220_36000.raw', '/home/data/kn198/raw/os75/kn2010_220_43200.raw', '/home/data/kn198/raw/os75/kn2010_220_50400.raw', '/home/data/kn198/raw/os75/kn2010_220_57600.raw', '/home/data/kn198/raw/os75/kn2010_220_64800.raw', '/home/data/kn198/raw/os75/kn2010_220_72000.raw', '/home/data/kn198/raw/os75/kn2010_220_79200.raw', '/home/data/kn198/raw/os75/kn2010_221_00000.raw', '/home/data/kn198/raw/os75/kn2010_221_07200.raw', '/home/data/kn198/raw/os75/kn2010_221_14400.raw', '/home/data/kn198/raw/os75/kn2010_221_21600.raw', '/home/data/kn198/raw/os75/kn2010_221_28800.raw', '/home/data/kn198/raw/os75/kn2010_221_36000.raw', '/home/data/kn198/raw/os75/kn2010_221_43200.raw', '/home/data/kn198/raw/os75/kn2010_221_50400.raw', '/home/data/kn198/raw/os75/kn2010_221_57600.raw', '/home/data/kn198/raw/os75/kn2010_221_64800.raw', '/home/data/kn198/raw/os75/kn2010_221_72000.raw', '/home/data/kn198/raw/os75/kn2010_221_79200.raw', '/home/data/kn198/raw/os75/kn2010_222_00000.raw', '/home/data/kn198/raw/os75/kn2010_222_07200.raw', '/home/data/kn198/raw/os75/kn2010_222_14400.raw', '/home/data/kn198/raw/os75/kn2010_222_21600.raw', '/home/data/kn198/raw/os75/kn2010_222_28800.raw', '/home/data/kn198/raw/os75/kn2010_222_36000.raw', '/home/data/kn198/raw/os75/kn2010_222_43200.raw', '/home/data/kn198/raw/os75/kn2010_222_50400.raw', '/home/data/kn198/raw/os75/kn2010_222_57600.raw', '/home/data/kn198/raw/os75/kn2010_222_64800.raw', '/home/data/kn198/raw/os75/kn2010_222_72000.raw', '/home/data/kn198/raw/os75/kn2010_222_79200.raw', '/home/data/kn198/raw/os75/kn2010_223_00000.raw', '/home/data/kn198/raw/os75/kn2010_223_07200.raw', '/home/data/kn198/raw/os75/kn2010_223_14400.raw', '/home/data/kn198/raw/os75/kn2010_223_21600.raw', '/home/data/kn198/raw/os75/kn2010_223_28800.raw', '/home/data/kn198/raw/os75/kn2010_223_36000.raw', '/home/data/kn198/raw/os75/kn2010_223_43200.raw', '/home/data/kn198/raw/os75/kn2010_223_50400.raw', '/home/data/kn198/raw/os75/kn2010_223_57600.raw', '/home/data/kn198/raw/os75/kn2010_223_64800.raw', '/home/data/kn198/raw/os75/kn2010_223_72000.raw', '/home/data/kn198/raw/os75/kn2010_223_79200.raw', '/home/data/kn198/raw/os75/kn2010_224_00000.raw', '/home/data/kn198/raw/os75/kn2010_224_07200.raw', '/home/data/kn198/raw/os75/kn2010_224_14400.raw', '/home/data/kn198/raw/os75/kn2010_224_21600.raw', '/home/data/kn198/raw/os75/kn2010_224_28800.raw', '/home/data/kn198/raw/os75/kn2010_224_36000.raw', '/home/data/kn198/raw/os75/kn2010_224_43200.raw', '/home/data/kn198/raw/os75/kn2010_224_50400.raw', '/home/data/kn198/raw/os75/kn2010_224_57600.raw', '/home/data/kn198/raw/os75/kn2010_224_64800.raw', '/home/data/kn198/raw/os75/kn2010_224_72000.raw', '/home/data/kn198/raw/os75/kn2010_224_79200.raw', '/home/data/kn198/raw/os75/kn2010_225_00000.raw', '/home/data/kn198/raw/os75/kn2010_225_07200.raw', '/home/data/kn198/raw/os75/kn2010_225_14400.raw', '/home/data/kn198/raw/os75/kn2010_225_21600.raw', '/home/data/kn198/raw/os75/kn2010_225_28800.raw', '/home/data/kn198/raw/os75/kn2010_225_36000.raw'] setup_info False skip_avg True smfile a_kn_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-08-14 11:56:32,366 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-08-14 11:56:32,367 DEBUG quick_run scanning files for time ranges... 2010-08-14 11:56:32,367 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb/scan 2010-08-14 11:56:32,367 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/scan 2010-08-14 11:56:32,367 DEBUG quick_setup running python command "scanraw" 2010-08-14 11:56:32,368 DEBUG call_matlab --> clear all 2010-08-14 11:56:32,373 DEBUG call_matlab <-- >> 2010-08-14 11:56:32,374 DEBUG call_matlab --> close all 2010-08-14 11:56:32,442 DEBUG call_matlab <-- >> 2010-08-14 11:56:32,442 DEBUG call_matlab --> cd /home/data/kn198/proc/os75nb/scan 2010-08-14 11:56:32,445 DEBUG call_matlab <-- >> 2010-08-14 11:56:32,446 DEBUG call_matlab --> scan_tmp 2010-08-14 11:56:33,870 DEBUG call_matlab <-- getting config files from "/home/data/kn198/proc/os75nb/config" running "kn198_cfg.m" running "kn198_proc.m" writing scan info to a_kn.scn >> 2010-08-14 11:56:33,870 DEBUG quick_run writing time range from a_kn.scn to a_kn.tr 2010-08-14 11:56:33,870 DEBUG quick_run getting scan time range 2010-08-14 11:56:33,871 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:33,871 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/scan 2010-08-14 11:56:33,871 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:33,871 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:33,873 DEBUG quick_subs extracting time range 2010-08-14 11:56:33,874 DEBUG quick_subs start_end_time 2010/08/06 18:19:46 to 2010/08/14 11:53:45 2010-08-14 11:56:33,875 DEBUG quick_subs dd0: 217.763727 dd1: 225.495660 2010-08-14 11:56:33,875 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/kn198/proc/os75nb 2010-08-14 11:56:33,875 DEBUG quick_adcp looking for database with adcpdb/a_kn*.blk 2010-08-14 11:56:33,876 DEBUG quick_adcp database found: listing blocks 2010-08-14 11:56:33,877 DEBUG quick_subs removing a_kndir.blk 2010-08-14 11:56:33,877 DEBUG quick_subs about to run mkblkdir 2010-08-14 11:56:33,878 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-08-14 11:56:33,878 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-08-14 11:56:33,913 DEBUG quick_subs database passes. 2010-08-14 11:56:33,913 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-08-14 11:56:33,914 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:33,914 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:33,915 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:33,915 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:33,915 DEBUG quick_subs extracting time range 2010-08-14 11:56:33,919 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 11:22:57 2010-08-14 11:56:33,919 DEBUG quick_subs dd0: 217.767292 dd1: 225.474271 2010-08-14 11:56:33,919 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-08-14 11:56:33,920 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:33,921 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:33,921 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:33,921 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:33,922 DEBUG quick_subs extracting time range 2010-08-14 11:56:33,922 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 11:22:57 2010-08-14 11:56:33,923 DEBUG quick_subs dd0: 217.767292 dd1: 225.474271 2010-08-14 11:56:33,923 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-08-14 11:56:33,936 DEBUG quick_adcp origdb_time_range is 2010/08/06 18:24:54 to 2010/08/14 11:22:57 2010-08-14 11:56:33,936 DEBUG quick_adcp (217.767292 to 225.474271) 2010-08-14 11:56:33,937 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-08-14 11:56:33,937 DEBUG quick_subs getting current (remaining after deletion) database times 2010-08-14 11:56:33,938 DEBUG quick_subs ['adcpdb/a_kn003.blk', 'adcpdb/a_kn005.blk', 'adcpdb/a_kn014.blk', 'adcpdb/a_kn001.blk', 'adcpdb/a_kn008.blk', 'adcpdb/a_kn004.blk', 'adcpdb/a_kn013.blk', 'adcpdb/a_kndir.blk', 'adcpdb/a_kn012.blk', 'adcpdb/a_kn011.blk', 'adcpdb/a_kn015.blk', 'adcpdb/a_kn009.blk', 'adcpdb/a_kn010.blk', 'adcpdb/a_kn002.blk', 'adcpdb/a_kn006.blk', 'adcpdb/a_kn007.blk'] 2010-08-14 11:56:33,938 DEBUG quick_subs length is 16 2010-08-14 11:56:33,938 DEBUG quick_subs removing a_kndir.blk 2010-08-14 11:56:33,939 DEBUG quick_subs about to run mkblkdir 2010-08-14 11:56:33,939 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-08-14 11:56:33,939 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-08-14 11:56:33,970 DEBUG quick_subs database passes. 2010-08-14 11:56:33,971 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-08-14 11:56:33,971 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:33,971 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:33,972 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:33,972 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:33,973 DEBUG quick_subs extracting time range 2010-08-14 11:56:33,973 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 11:22:57 2010-08-14 11:56:33,973 DEBUG quick_subs dd0: 217.767292 dd1: 225.474271 2010-08-14 11:56:33,974 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:33,974 DEBUG quick_subs reading time range 2010-08-14 11:56:33,974 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 11:22:57 2010-08-14 11:56:33,975 DEBUG quick_subs dd0: 217.767292 dd1: 225.474271 2010-08-14 11:56:33,975 INFO quick_subs Sat Aug 14 11:56:33 2010 2010-08-14 11:56:33,975 INFO quick_subs checking database time range by listblk 2010-08-14 11:56:33,976 DEBUG quick_subs removing a_kndir.blk 2010-08-14 11:56:33,976 DEBUG quick_subs about to run mkblkdir 2010-08-14 11:56:33,976 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-08-14 11:56:33,977 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-08-14 11:56:33,994 DEBUG quick_subs database passes. 2010-08-14 11:56:33,995 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-08-14 11:56:33,995 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:33,995 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:33,995 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:33,996 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:33,996 DEBUG quick_subs extracting time range 2010-08-14 11:56:33,997 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 11:22:57 2010-08-14 11:56:33,997 DEBUG quick_subs dd0: 217.767292 dd1: 225.474271 2010-08-14 11:56:33,999 INFO quick_subs found line /* 0 n= 146 a_kn001.blk */ 2010/08/06 18:24:54 to 2010/08/07 06:38:28 2010-08-14 11:56:34,000 INFO quick_subs found line /* 1 n= 146 a_kn002.blk */ 2010/08/07 06:43:32 to 2010/08/07 18:57:49 2010-08-14 11:56:34,000 INFO quick_subs found line /* 2 n= 42 a_kn003.blk */ 2010/08/07 19:02:53 to 2010/08/07 22:30:30 2010-08-14 11:56:34,000 INFO quick_subs found line /* 3 n= 146 a_kn004.blk */ 2010/08/08 09:59:51 to 2010/08/08 22:12:39 2010-08-14 11:56:34,001 INFO quick_subs found line /* 4 n= 146 a_kn005.blk */ 2010/08/08 22:17:41 to 2010/08/09 10:28:00 2010-08-14 11:56:34,001 INFO quick_subs found line /* 5 n= 146 a_kn006.blk */ 2010/08/09 10:33:02 to 2010/08/09 22:43:28 2010-08-14 11:56:34,001 INFO quick_subs found line /* 6 n= 146 a_kn007.blk */ 2010/08/09 22:48:30 to 2010/08/10 11:03:45 2010-08-14 11:56:34,001 INFO quick_subs found line /* 7 n= 146 a_kn008.blk */ 2010/08/10 11:08:47 to 2010/08/10 23:19:24 2010-08-14 11:56:34,001 INFO quick_subs found line /* 8 n= 146 a_kn009.blk */ 2010/08/10 23:24:26 to 2010/08/11 11:35:19 2010-08-14 11:56:34,002 INFO quick_subs found line /* 9 n= 146 a_kn010.blk */ 2010/08/11 11:40:21 to 2010/08/11 23:51:01 2010-08-14 11:56:34,002 INFO quick_subs found line /* 10 n= 146 a_kn011.blk */ 2010/08/11 23:56:04 to 2010/08/12 12:05:49 2010-08-14 11:56:34,002 INFO quick_subs found line /* 11 n= 146 a_kn012.blk */ 2010/08/12 12:10:51 to 2010/08/13 00:20:33 2010-08-14 11:56:34,002 INFO quick_subs found line /* 12 n= 146 a_kn013.blk */ 2010/08/13 00:25:35 to 2010/08/13 12:35:51 2010-08-14 11:56:34,003 INFO quick_subs found line /* 13 n= 146 a_kn014.blk */ 2010/08/13 12:40:53 to 2010/08/14 00:50:50 2010-08-14 11:56:34,003 INFO quick_subs found line /* 14 n= 125 a_kn015.blk */ 2010/08/14 00:55:50 to 2010/08/14 11:22:57 2010-08-14 11:56:34,003 INFO quick_subs scan data start at 217.7637269 2010-08-14 11:56:34,003 INFO quick_subs scan time range: 2010/08/06 18:19:46 to 2010/08/14 11:53:45 2010-08-14 11:56:34,004 INFO quick_subs codasdb ends at 225.4742708 (2010/08/14 11:22:57) 2010-08-14 11:56:34,004 DEBUG quick_subs ... changed dirs, in /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:34,005 DEBUG quick_subs deleting these files: ['a_kn015.blk'] 2010-08-14 11:56:34,005 DEBUG quick_subs getting current (remaining after deletion) database times 2010-08-14 11:56:34,006 DEBUG quick_subs ['adcpdb/a_kn003.blk', 'adcpdb/a_kn005.blk', 'adcpdb/a_kn014.blk', 'adcpdb/a_kn001.blk', 'adcpdb/a_kn008.blk', 'adcpdb/a_kn004.blk', 'adcpdb/a_kn013.blk', 'adcpdb/a_kn012.blk', 'adcpdb/a_kn011.blk', 'adcpdb/a_kn009.blk', 'adcpdb/a_kn010.blk', 'adcpdb/a_kn002.blk', 'adcpdb/a_kn006.blk', 'adcpdb/a_kn007.blk'] 2010-08-14 11:56:34,006 DEBUG quick_subs length is 14 2010-08-14 11:56:34,006 DEBUG quick_subs about to run mkblkdir 2010-08-14 11:56:34,007 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-08-14 11:56:34,007 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-08-14 11:56:34,021 DEBUG quick_subs database passes. 2010-08-14 11:56:34,022 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-08-14 11:56:34,022 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,022 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:34,023 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:34,023 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:34,023 DEBUG quick_subs extracting time range 2010-08-14 11:56:34,025 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 00:50:50 2010-08-14 11:56:34,025 DEBUG quick_subs dd0: 217.767292 dd1: 225.035301 2010-08-14 11:56:34,025 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:34,026 DEBUG quick_subs reading time range 2010-08-14 11:56:34,026 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 00:50:50 2010-08-14 11:56:34,026 DEBUG quick_subs dd0: 217.767292 dd1: 225.035301 2010-08-14 11:56:34,027 DEBUG quick_subs codas database currently goes from 2010/08/06 18:24:54 to 2010/08/14 00:50:50 2010-08-14 11:56:34,027 DEBUG quick_subs (217.767292 to 225.035301) 2010-08-14 11:56:34,027 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014 2010-08-14 11:56:34,029 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 2010-08-14 11:56:34,029 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014'] 2010-08-14 11:56:34,029 DEBUG quick_subs checked: unloaded blkstrs: ['015'] 2010-08-14 11:56:34,029 DEBUG quick_subs first unloaded file is load/ens_blk015.cmd 2010-08-14 11:56:34,031 DEBUG quick_subs data goes from 2010/08/14 00:55:50 to 2010/08/14 11:53:45 2010-08-14 11:56:34,031 DEBUG quick_subs (225.038773 to 225.495660) 2010-08-14 11:56:34,032 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/kn198/raw/os75/kn2010_217_65982.raw /home/data/kn198/raw/os75/kn2010_217_72000.raw /home/data/kn198/raw/os75/kn2010_217_79200.raw /home/data/kn198/raw/os75/kn2010_218_00000.raw /home/data/kn198/raw/os75/kn2010_218_07200.raw /home/data/kn198/raw/os75/kn2010_218_14400.raw /home/data/kn198/raw/os75/kn2010_218_21600.raw /home/data/kn198/raw/os75/kn2010_218_28800.raw /home/data/kn198/raw/os75/kn2010_218_36000.raw /home/data/kn198/raw/os75/kn2010_218_43200.raw /home/data/kn198/raw/os75/kn2010_218_50400.raw /home/data/kn198/raw/os75/kn2010_218_57600.raw /home/data/kn198/raw/os75/kn2010_218_64800.raw /home/data/kn198/raw/os75/kn2010_218_72000.raw /home/data/kn198/raw/os75/kn2010_218_79200.raw /home/data/kn198/raw/os75/kn2010_219_35687.raw /home/data/kn198/raw/os75/kn2010_219_36000.raw /home/data/kn198/raw/os75/kn2010_219_43200.raw /home/data/kn198/raw/os75/kn2010_219_50400.raw /home/data/kn198/raw/os75/kn2010_219_57600.raw /home/data/kn198/raw/os75/kn2010_219_64800.raw /home/data/kn198/raw/os75/kn2010_219_72000.raw /home/data/kn198/raw/os75/kn2010_219_79200.raw /home/data/kn198/raw/os75/kn2010_220_00000.raw /home/data/kn198/raw/os75/kn2010_220_07200.raw /home/data/kn198/raw/os75/kn2010_220_14400.raw /home/data/kn198/raw/os75/kn2010_220_21600.raw /home/data/kn198/raw/os75/kn2010_220_28800.raw /home/data/kn198/raw/os75/kn2010_220_36000.raw /home/data/kn198/raw/os75/kn2010_220_43200.raw /home/data/kn198/raw/os75/kn2010_220_50400.raw /home/data/kn198/raw/os75/kn2010_220_57600.raw /home/data/kn198/raw/os75/kn2010_220_64800.raw /home/data/kn198/raw/os75/kn2010_220_72000.raw /home/data/kn198/raw/os75/kn2010_220_79200.raw /home/data/kn198/raw/os75/kn2010_221_00000.raw /home/data/kn198/raw/os75/kn2010_221_07200.raw /home/data/kn198/raw/os75/kn2010_221_14400.raw /home/data/kn198/raw/os75/kn2010_221_21600.raw /home/data/kn198/raw/os75/kn2010_221_28800.raw /home/data/kn198/raw/os75/kn2010_221_36000.raw /home/data/kn198/raw/os75/kn2010_221_43200.raw /home/data/kn198/raw/os75/kn2010_221_50400.raw /home/data/kn198/raw/os75/kn2010_221_57600.raw /home/data/kn198/raw/os75/kn2010_221_64800.raw /home/data/kn198/raw/os75/kn2010_221_72000.raw /home/data/kn198/raw/os75/kn2010_221_79200.raw /home/data/kn198/raw/os75/kn2010_222_00000.raw /home/data/kn198/raw/os75/kn2010_222_07200.raw /home/data/kn198/raw/os75/kn2010_222_14400.raw /home/data/kn198/raw/os75/kn2010_222_21600.raw /home/data/kn198/raw/os75/kn2010_222_28800.raw /home/data/kn198/raw/os75/kn2010_222_36000.raw /home/data/kn198/raw/os75/kn2010_222_43200.raw /home/data/kn198/raw/os75/kn2010_222_50400.raw /home/data/kn198/raw/os75/kn2010_222_57600.raw /home/data/kn198/raw/os75/kn2010_222_64800.raw /home/data/kn198/raw/os75/kn2010_222_72000.raw /home/data/kn198/raw/os75/kn2010_222_79200.raw /home/data/kn198/raw/os75/kn2010_223_00000.raw /home/data/kn198/raw/os75/kn2010_223_07200.raw /home/data/kn198/raw/os75/kn2010_223_14400.raw /home/data/kn198/raw/os75/kn2010_223_21600.raw /home/data/kn198/raw/os75/kn2010_223_28800.raw /home/data/kn198/raw/os75/kn2010_223_36000.raw /home/data/kn198/raw/os75/kn2010_223_43200.raw /home/data/kn198/raw/os75/kn2010_223_50400.raw /home/data/kn198/raw/os75/kn2010_223_57600.raw /home/data/kn198/raw/os75/kn2010_223_64800.raw /home/data/kn198/raw/os75/kn2010_223_72000.raw /home/data/kn198/raw/os75/kn2010_223_79200.raw /home/data/kn198/raw/os75/kn2010_224_00000.raw /home/data/kn198/raw/os75/kn2010_224_07200.raw /home/data/kn198/raw/os75/kn2010_224_14400.raw /home/data/kn198/raw/os75/kn2010_224_21600.raw /home/data/kn198/raw/os75/kn2010_224_28800.raw /home/data/kn198/raw/os75/kn2010_224_36000.raw /home/data/kn198/raw/os75/kn2010_224_43200.raw /home/data/kn198/raw/os75/kn2010_224_50400.raw /home/data/kn198/raw/os75/kn2010_224_57600.raw /home/data/kn198/raw/os75/kn2010_224_64800.raw /home/data/kn198/raw/os75/kn2010_224_72000.raw /home/data/kn198/raw/os75/kn2010_224_79200.raw /home/data/kn198/raw/os75/kn2010_225_00000.raw /home/data/kn198/raw/os75/kn2010_225_07200.raw /home/data/kn198/raw/os75/kn2010_225_14400.raw /home/data/kn198/raw/os75/kn2010_225_21600.raw /home/data/kn198/raw/os75/kn2010_225_28800.raw /home/data/kn198/raw/os75/kn2010_225_36000.raw 2010-08-14 11:56:34,032 INFO quick_run Sat Aug 14 11:56:34 2010 2010-08-14 11:56:34,032 INFO quick_run about to load uhdas files 2010-08-14 11:56:34,032 INFO quick_run /home/data/kn198/raw/os75/kn2010_217_65982.raw /home/data/kn198/raw/os75/kn2010_217_72000.raw /home/data/kn198/raw/os75/kn2010_217_79200.raw /home/data/kn198/raw/os75/kn2010_218_00000.raw /home/data/kn198/raw/os75/kn2010_218_07200.raw /home/data/kn198/raw/os75/kn2010_218_14400.raw /home/data/kn198/raw/os75/kn2010_218_21600.raw /home/data/kn198/raw/os75/kn2010_218_28800.raw /home/data/kn198/raw/os75/kn2010_218_36000.raw /home/data/kn198/raw/os75/kn2010_218_43200.raw /home/data/kn198/raw/os75/kn2010_218_50400.raw /home/data/kn198/raw/os75/kn2010_218_57600.raw /home/data/kn198/raw/os75/kn2010_218_64800.raw /home/data/kn198/raw/os75/kn2010_218_72000.raw /home/data/kn198/raw/os75/kn2010_218_79200.raw /home/data/kn198/raw/os75/kn2010_219_35687.raw /home/data/kn198/raw/os75/kn2010_219_36000.raw /home/data/kn198/raw/os75/kn2010_219_43200.raw /home/data/kn198/raw/os75/kn2010_219_50400.raw /home/data/kn198/raw/os75/kn2010_219_57600.raw /home/data/kn198/raw/os75/kn2010_219_64800.raw /home/data/kn198/raw/os75/kn2010_219_72000.raw /home/data/kn198/raw/os75/kn2010_219_79200.raw /home/data/kn198/raw/os75/kn2010_220_00000.raw /home/data/kn198/raw/os75/kn2010_220_07200.raw /home/data/kn198/raw/os75/kn2010_220_14400.raw /home/data/kn198/raw/os75/kn2010_220_21600.raw /home/data/kn198/raw/os75/kn2010_220_28800.raw /home/data/kn198/raw/os75/kn2010_220_36000.raw /home/data/kn198/raw/os75/kn2010_220_43200.raw /home/data/kn198/raw/os75/kn2010_220_50400.raw /home/data/kn198/raw/os75/kn2010_220_57600.raw /home/data/kn198/raw/os75/kn2010_220_64800.raw /home/data/kn198/raw/os75/kn2010_220_72000.raw /home/data/kn198/raw/os75/kn2010_220_79200.raw /home/data/kn198/raw/os75/kn2010_221_00000.raw /home/data/kn198/raw/os75/kn2010_221_07200.raw /home/data/kn198/raw/os75/kn2010_221_14400.raw /home/data/kn198/raw/os75/kn2010_221_21600.raw /home/data/kn198/raw/os75/kn2010_221_28800.raw /home/data/kn198/raw/os75/kn2010_221_36000.raw /home/data/kn198/raw/os75/kn2010_221_43200.raw /home/data/kn198/raw/os75/kn2010_221_50400.raw /home/data/kn198/raw/os75/kn2010_221_57600.raw /home/data/kn198/raw/os75/kn2010_221_64800.raw /home/data/kn198/raw/os75/kn2010_221_72000.raw /home/data/kn198/raw/os75/kn2010_221_79200.raw /home/data/kn198/raw/os75/kn2010_222_00000.raw /home/data/kn198/raw/os75/kn2010_222_07200.raw /home/data/kn198/raw/os75/kn2010_222_14400.raw /home/data/kn198/raw/os75/kn2010_222_21600.raw /home/data/kn198/raw/os75/kn2010_222_28800.raw /home/data/kn198/raw/os75/kn2010_222_36000.raw /home/data/kn198/raw/os75/kn2010_222_43200.raw /home/data/kn198/raw/os75/kn2010_222_50400.raw /home/data/kn198/raw/os75/kn2010_222_57600.raw /home/data/kn198/raw/os75/kn2010_222_64800.raw /home/data/kn198/raw/os75/kn2010_222_72000.raw /home/data/kn198/raw/os75/kn2010_222_79200.raw /home/data/kn198/raw/os75/kn2010_223_00000.raw /home/data/kn198/raw/os75/kn2010_223_07200.raw /home/data/kn198/raw/os75/kn2010_223_14400.raw /home/data/kn198/raw/os75/kn2010_223_21600.raw /home/data/kn198/raw/os75/kn2010_223_28800.raw /home/data/kn198/raw/os75/kn2010_223_36000.raw /home/data/kn198/raw/os75/kn2010_223_43200.raw /home/data/kn198/raw/os75/kn2010_223_50400.raw /home/data/kn198/raw/os75/kn2010_223_57600.raw /home/data/kn198/raw/os75/kn2010_223_64800.raw /home/data/kn198/raw/os75/kn2010_223_72000.raw /home/data/kn198/raw/os75/kn2010_223_79200.raw /home/data/kn198/raw/os75/kn2010_224_00000.raw /home/data/kn198/raw/os75/kn2010_224_07200.raw /home/data/kn198/raw/os75/kn2010_224_14400.raw /home/data/kn198/raw/os75/kn2010_224_21600.raw /home/data/kn198/raw/os75/kn2010_224_28800.raw /home/data/kn198/raw/os75/kn2010_224_36000.raw /home/data/kn198/raw/os75/kn2010_224_43200.raw /home/data/kn198/raw/os75/kn2010_224_50400.raw /home/data/kn198/raw/os75/kn2010_224_57600.raw /home/data/kn198/raw/os75/kn2010_224_64800.raw /home/data/kn198/raw/os75/kn2010_224_72000.raw /home/data/kn198/raw/os75/kn2010_224_79200.raw /home/data/kn198/raw/os75/kn2010_225_00000.raw /home/data/kn198/raw/os75/kn2010_225_07200.raw /home/data/kn198/raw/os75/kn2010_225_14400.raw /home/data/kn198/raw/os75/kn2010_225_21600.raw /home/data/kn198/raw/os75/kn2010_225_28800.raw /home/data/kn198/raw/os75/kn2010_225_36000.raw 2010-08-14 11:56:34,033 DEBUG quick_setup load/ldcodas.tmp exists 2010-08-14 11:56:34,033 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,033 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/load 2010-08-14 11:56:34,033 DEBUG quick_setup running python command "ldcodas" 2010-08-14 11:56:34,034 DEBUG quick_subs in /home/data/kn198/proc/os75nb/load 2010-08-14 11:56:34,034 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014'] 2010-08-14 11:56:34,035 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015'] 2010-08-14 11:56:34,036 DEBUG quick_subs starttime is 2010/08/14 00:55:50 2010-08-14 11:56:34,037 DEBUG quick_subs RESETTING thisload_time_range 2010-08-14 11:56:34,037 DEBUG quick_subs time range of data to be loaded: 2010/08/14 00:55:50 to 2010/08/14 11:53:45 2010-08-14 11:56:34,037 DEBUG quick_subs data startdd 225.038773 data enddd 225.495660 2010-08-14 11:56:34,037 DEBUG quick_subs about to load from these cmd files ['ens_blk015.cmd'] 2010-08-14 11:56:34,038 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_kn DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk015.cmd 2010-08-14 11:56:34,038 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-08-14 11:56:34,085 DEBUG quick_subs removing a_kndir.blk 2010-08-14 11:56:34,085 DEBUG quick_subs about to run mkblkdir 2010-08-14 11:56:34,086 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-08-14 11:56:34,086 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-08-14 11:56:34,126 DEBUG quick_subs database passes. 2010-08-14 11:56:34,126 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-08-14 11:56:34,127 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,127 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:34,127 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:34,127 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:34,128 DEBUG quick_subs extracting time range 2010-08-14 11:56:34,129 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 11:53:18 2010-08-14 11:56:34,129 DEBUG quick_subs dd0: 217.767292 dd1: 225.495347 2010-08-14 11:56:34,129 DEBUG quick_subs writing time range from a_kn.lst to a_kn.tr 2010-08-14 11:56:34,130 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,130 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:34,130 DEBUG quick_setup running python command "get_time_range" 2010-08-14 11:56:34,130 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-08-14 11:56:34,131 DEBUG quick_subs extracting time range 2010-08-14 11:56:34,131 DEBUG quick_subs start_end_time 2010/08/06 18:24:54 to 2010/08/14 11:53:18 2010-08-14 11:56:34,131 DEBUG quick_subs dd0: 217.767292 dd1: 225.495347 2010-08-14 11:56:34,132 DEBUG quick_adcp loaded_time_range is 2010/08/06 18:24:54 to 2010/08/14 11:53:18 2010-08-14 11:56:34,140 DEBUG quick_adcp (217.767292 to 225.495347) 2010-08-14 11:56:34,141 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,141 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/adcpdb 2010-08-14 11:56:34,141 DEBUG quick_setup running python command "lst_conf" 2010-08-14 11:56:34,141 DEBUG quick_subs dbname: a_kn output: a_kn.cnh time_ranges: all 2010-08-14 11:56:34,142 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-08-14 11:56:34,182 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-08-14 11:56:34,183 DEBUG quick_run executing commands from /home/data/kn198/proc/os75nb/edit 2010-08-14 11:56:34,183 DEBUG quick_run setup.m exists. not replacing 2010-08-14 11:56:34,183 DEBUG quick_run asetup.m exists. not replacing 2010-08-14 11:56:34,183 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-08-14 11:56:34,184 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-08-14 11:56:34,184 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,184 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/edit 2010-08-14 11:56:34,184 DEBUG quick_setup running python command "setflags" 2010-08-14 11:56:34,184 DEBUG quick_subs dbname: ../adcpdb/a_kn pg_min: 50 set_range_bit time_ranges: all 2010-08-14 11:56:34,185 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-08-14 11:56:34,248 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-08-14 11:56:34,248 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,248 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:34,249 DEBUG quick_setup running python command "catnav" 2010-08-14 11:56:34,252 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-08-14 11:56:34,252 DEBUG quick_run hcorr_inst is posmv 2010-08-14 11:56:34,252 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-08-14 11:56:34,253 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:34,253 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/cal/rotate 2010-08-14 11:56:34,253 DEBUG quick_setup running python command "lst_hdg" 2010-08-14 11:56:34,253 DEBUG quick_subs dbname: ../../adcpdb/a_kn output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-08-14 11:56:34,254 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-08-14 11:56:34,322 DEBUG quick_mpl Starting plot: hcorr 2010-08-14 11:56:34,465 DEBUG quick_mplplots found 7.728054 days of data 2010-08-14 11:56:34,465 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2010-08-14 11:56:34,468 DEBUG quick_mplplots printing 3 pages 2010-08-14 11:56:37,575 DEBUG quick_mpl Ending plot: hcorr 2010-08-14 11:56:37,575 DEBUG quick_run ------------ step 7: rotate ------------- 2010-08-14 11:56:37,575 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:37,575 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/cal/rotate 2010-08-14 11:56:37,576 DEBUG quick_setup running python command "rotated" 2010-08-14 11:56:37,612 DEBUG quick_subs last rotated time from log file: 2010/08/14 11:23:24 2010-08-14 11:56:37,612 DEBUG quick_subs time range of currently loaded data: 2010/08/06 18:24:54 to 2010/08/14 11:53:18 2010-08-14 11:56:37,613 DEBUG quick_subs (217.767292 to 225.495347) 2010-08-14 11:56:37,614 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-08-14 11:56:37,614 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:37,614 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/cal/rotate 2010-08-14 11:56:37,615 DEBUG quick_setup running python command "rotate" 2010-08-14 11:56:37,615 DEBUG quick_subs DB_NAME: ../../adcpdb/a_kn LOG_FILE: rotate.log TIME_RANGE: 2010/08/14 00:55:50 to 2010/08/14 11:53:45 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-08-14 11:56:37,616 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-08-14 11:56:37,627 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-08-14 11:56:37,627 DEBUG quick_setup nav/as_nav.tmp exists 2010-08-14 11:56:37,627 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:37,628 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:37,628 DEBUG quick_setup running python command "as_nav" 2010-08-14 11:56:37,628 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/08/06 18:24:54 to 2010/08/14 11:53:18 /* the whole time range */ 2010-08-14 11:56:37,629 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-08-14 11:56:37,698 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-08-14 11:56:37,699 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:37,699 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:37,699 DEBUG quick_setup running python command "refabs" 2010-08-14 11:56:37,700 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.nav fix_file: a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-08-14 11:56:37,700 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-08-14 11:56:37,750 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-08-14 11:56:37,750 DEBUG quick_setup nav/smoothr.tmp exists 2010-08-14 11:56:37,751 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:37,751 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:37,751 DEBUG quick_setup running python command "smoothr" 2010-08-14 11:56:37,751 DEBUG quick_subs reference_file: a_kn.nav refabs_output: a_kn.ref output: a_kn.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-08-14 11:56:37,752 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-08-14 11:56:37,975 DEBUG quick_adcp about to run numpy refsm 2010-08-14 11:56:38,618 DEBUG quick_npy Starting: refsm 2010-08-14 11:56:38,967 INFO nav dtmin = -0.50 dtmax = 0.50 2010-08-14 11:56:39,698 DEBUG quick_npy Ending: refsm 2010-08-14 11:56:39,700 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-08-14 11:56:39,702 DEBUG quick_setup nav/putnav.tmp exists 2010-08-14 11:56:39,702 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:39,703 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:39,703 DEBUG quick_setup running python command "putnav" 2010-08-14 11:56:39,703 DEBUG quick_subs dbname: ../adcpdb/a_kn position_file: a_kn_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-08-14 11:56:39,703 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-08-14 11:56:39,869 DEBUG quick_adcp plotting navigation 2010-08-14 11:56:39,870 DEBUG quick_mpl Starting plot: nav 2010-08-14 11:56:40,915 DEBUG quick_mpl Ending plot: nav 2010-08-14 11:56:40,915 DEBUG quick_mpl Starting plot: refl 2010-08-14 11:56:41,075 DEBUG quick_mplplots found 7.724538 days of data 2010-08-14 11:56:41,076 DEBUG quick_mplplots start day is 217.000000 2010-08-14 11:56:41,076 DEBUG quick_mplplots figures with 2.000000 days per page 2010-08-14 11:56:41,076 DEBUG quick_mplplots printing 5 pages 2010-08-14 11:56:41,076 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-08-14 11:56:41,077 INFO quick_mplplots startdd is 217.0 2010-08-14 11:56:41,077 INFO quick_mplplots dt is 2.0 2010-08-14 11:56:46,305 DEBUG quick_mpl Ending plot: refl 2010-08-14 11:56:46,306 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-08-14 11:56:46,306 DEBUG quick_run find profile flags ------------ *** ------------- 2010-08-14 11:56:46,307 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:46,307 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/edit 2010-08-14 11:56:46,307 DEBUG quick_setup running python command "aedit" 2010-08-14 11:56:48,263 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-08-14 11:56:48,264 DEBUG quick_run starting in: /home/data/kn198/proc/os75nb 2010-08-14 11:56:48,264 DEBUG quick_run executing commands from: edit 2010-08-14 11:56:48,268 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_kn abottom_tmp.asc 2010-08-14 11:56:48,276 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_kn abadprf_tmp.asc 2010-08-14 11:56:48,288 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_kn abadbin_tmp.asc 2010-08-14 11:56:48,303 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_kn 30 2010-08-14 11:56:48,314 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-08-14 11:56:48,362 DEBUG quick_run changing directories back to /home/data/kn198/proc/os75nb 2010-08-14 11:56:48,363 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-08-14 11:56:48,363 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-08-14 11:56:48,363 DEBUG quick_setup nav/as_nav.tmp exists 2010-08-14 11:56:48,364 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:48,364 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:48,364 DEBUG quick_setup running python command "as_nav" 2010-08-14 11:56:48,365 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/08/06 18:24:54 to 2010/08/14 11:53:18 /* the whole time range */ 2010-08-14 11:56:48,365 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-08-14 11:56:48,431 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-08-14 11:56:48,432 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:48,432 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:48,432 DEBUG quick_setup running python command "refabs" 2010-08-14 11:56:48,432 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.nav fix_file: a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-08-14 11:56:48,433 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-08-14 11:56:48,484 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-08-14 11:56:48,484 DEBUG quick_setup nav/smoothr.tmp exists 2010-08-14 11:56:48,484 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:48,485 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:48,485 DEBUG quick_setup running python command "smoothr" 2010-08-14 11:56:48,485 DEBUG quick_subs reference_file: a_kn.nav refabs_output: a_kn.ref output: a_kn.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-08-14 11:56:48,486 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-08-14 11:56:48,720 DEBUG quick_adcp running refsm 2010-08-14 11:56:48,721 DEBUG quick_npy Starting: refsm 2010-08-14 11:56:48,974 INFO nav dtmin = -0.50 dtmax = 0.50 2010-08-14 11:56:49,567 DEBUG quick_npy Ending: refsm 2010-08-14 11:56:49,567 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-08-14 11:56:49,567 DEBUG quick_setup nav/putnav.tmp exists 2010-08-14 11:56:49,568 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:49,568 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:49,568 DEBUG quick_setup running python command "putnav" 2010-08-14 11:56:49,568 DEBUG quick_subs dbname: ../adcpdb/a_kn position_file: a_kn_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-08-14 11:56:49,569 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-08-14 11:56:49,671 DEBUG quick_mpl Starting plot: nav 2010-08-14 11:56:50,942 DEBUG quick_mpl Ending plot: nav 2010-08-14 11:56:50,942 DEBUG quick_mpl Starting plot: refl 2010-08-14 11:56:51,101 DEBUG quick_mplplots found 7.724538 days of data 2010-08-14 11:56:51,101 DEBUG quick_mplplots start day is 217.000000 2010-08-14 11:56:51,101 DEBUG quick_mplplots figures with 2.000000 days per page 2010-08-14 11:56:51,101 DEBUG quick_mplplots printing 5 pages 2010-08-14 11:56:51,102 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-08-14 11:56:51,102 INFO quick_mplplots startdd is 217.0 2010-08-14 11:56:51,102 INFO quick_mplplots dt is 2.0 2010-08-14 11:56:56,372 DEBUG quick_mpl Ending plot: refl 2010-08-14 11:56:56,373 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-08-14 11:56:56,373 DEBUG quick_setup edit/lst_temp.tmp exists 2010-08-14 11:56:56,373 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:56,373 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/edit 2010-08-14 11:56:56,374 DEBUG quick_setup running python command "lst_temp" 2010-08-14 11:56:56,374 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn.tem step_size= 1 year_base= 2010 time_ranges: all 2010-08-14 11:56:56,374 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-08-14 11:56:56,416 DEBUG quick_mpl Starting plot: temp 2010-08-14 11:56:56,474 DEBUG quick_mplplots plotting 2071 points 2010-08-14 11:56:57,140 DEBUG quick_mpl Ending plot: temp 2010-08-14 11:56:57,141 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-08-14 11:56:57,141 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-08-14 11:56:57,142 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:57,142 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/cal/botmtrk 2010-08-14 11:56:57,142 DEBUG quick_setup running python command "lst_btrk" 2010-08-14 11:56:57,142 DEBUG quick_subs dbname: ../../adcpdb/a_kn output: a_kn.btm step_size= 1 year_base= 2010 time_ranges: 2010/08/06 18:24:54 to 2010/08/14 11:53:18 /* whole time range */ 2010-08-14 11:56:57,143 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-08-14 11:56:57,162 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-08-14 11:56:57,163 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:57,163 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/cal/botmtrk 2010-08-14 11:56:57,163 DEBUG quick_setup running python command "refabsbt" 2010-08-14 11:56:57,163 DEBUG quick_subs fix_file_type: simple reference_file: a_kn.btm fix_file: ../../nav/a_kn.gps output: a_kn.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-08-14 11:56:57,164 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-08-14 11:56:57,171 DEBUG quick_mpl Starting plot: btcal 2010-08-14 11:56:57,173 DEBUG quick_mplplots No data in a_kn.btm 2010-08-14 11:56:57,173 DEBUG quick_mplplots Returning from Btplot with no output 2010-08-14 11:56:57,173 DEBUG quick_mpl Ending plot: btcal 2010-08-14 11:56:57,174 DEBUG quick_setup nav/as_nav.tmp exists 2010-08-14 11:56:57,174 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:57,174 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/nav 2010-08-14 11:56:57,174 DEBUG quick_setup running python command "as_nav" 2010-08-14 11:56:57,175 DEBUG quick_subs dbname: ../adcpdb/a_kn output: a_kn step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/08/06 18:24:54 to 2010/08/14 11:53:18 /* the whole time range */ 2010-08-14 11:56:57,175 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-08-14 11:56:57,240 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-08-14 11:56:57,241 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:57,241 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/cal/watertrk 2010-08-14 11:56:57,242 DEBUG quick_setup running python command "timslip" 2010-08-14 11:56:57,242 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_kn.gps reference_file: ../../nav/a_kn.nav output_file: a_kn_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-08-14 11:56:57,242 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-08-14 11:56:57,271 DEBUG quick_mpl Starting plot: wtcal 2010-08-14 11:56:57,277 DEBUG quick_mplplots Found 58 calibration points 2010-08-14 11:56:59,812 DEBUG quick_mpl Ending plot: wtcal 2010-08-14 11:56:59,813 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-08-14 11:56:59,813 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:59,814 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/vector 2010-08-14 11:56:59,814 DEBUG quick_setup running python command "timegrid" 2010-08-14 11:56:59,814 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_kn.tmp 2010-08-14 11:56:59,824 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:59,824 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/vector 2010-08-14 11:56:59,825 DEBUG quick_setup running python command "as_vect" 2010-08-14 11:56:59,825 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-08-14 11:56:59,995 DEBUG quick_asect done making vector matfiles 2010-08-14 11:56:59,995 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:56:59,996 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/contour 2010-08-14 11:56:59,996 DEBUG quick_setup running python command "timegrid" 2010-08-14 11:56:59,996 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_kn.tmp 2010-08-14 11:57:00,040 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:57:00,041 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/contour 2010-08-14 11:57:00,041 DEBUG quick_setup running python command "as_cont" 2010-08-14 11:57:00,042 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-08-14 11:57:00,322 DEBUG quick_setup starting in /home/data/kn198/proc/os75nb 2010-08-14 11:57:00,323 DEBUG quick_setup executing commands from /home/data/kn198/proc/os75nb/contour 2010-08-14 11:57:00,323 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_kn 2010-08-14 11:57:00,792 DEBUG quick_asect done running getmat with "allbins" 2010-08-14 11:57:00,864 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-08-14 11:57:00,865 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-08-14 11:57:00,865 DEBUG root matfile is contour/contour_uv.mat 2010-08-14 11:57:00,870 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-08-14 11:57:00,871 DEBUG root matfile is vector/vector_uv.mat 2010-08-14 11:57:00,872 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-08-14 11:57:00,872 DEBUG root matfile is contour/contour_xy.mat 2010-08-14 11:57:00,873 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-08-14 11:57:00,873 DEBUG root matfile is vector/vector_xy.mat 2010-08-14 11:57:00,874 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-08-14 11:57:00,874 DEBUG root about to copy file edit/a_kn.tem to /home/adcp/www/data/os75nb_temp.asc 2010-08-14 11:57:00,875 INFO root copying edit/a_kn.tem to /home/adcp/www/data/os75nb_temp.asc 2010-08-14 11:57:00,875 INFO root Ending quick_adcp.py 2010-08-14 11:57:00,948 DEBUG quick_setup killed matlab engine