2011-08-18 20:27:50,567 DEBUG root about to write control file parameters to --yearbase 2011 --cruisename EN497 --configtype python --sonar os75bb --dbname a_en --datatype uhdas --cfgpath /home/data/EN497/proc/os75bb/config --ens_len 300 #--update_gbin ## python gbins: run by "run_lastensq.py" at sea --skip_avg ## see above --max_search_depth 1000 --proc_engine python --incremental --find_pflags --hidedisplay --top_plotbin 1 --auto 2011-08-18 20:27:50,568 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75bb 2011-08-18 20:27:50,568 DEBUG quick_adcp progdir = /home/currents/programs 2011-08-18 20:27:50,569 DEBUG quick_adcp binos = lnx64 2011-08-18 20:27:50,570 DEBUG quick_setup found cruise_info.hcorr (ashpaq2, paq, 0) 2011-08-18 20:27:50,571 INFO quick_adcp importing numpy 2011-08-18 20:27:50,571 INFO quick_adcp importing matplotlib 2011-08-18 20:27:50,572 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ aflagit_setup as_cont as_nav as_vect asetup catnav check_beamangle check_dbinfo check_headcorr check_opts check_uhdascfg ddtime def_qlist del_overlapping fill_thisload_timerange get_asvars get_cmd_timerange get_filelist get_nodb_times get_time_range getmat ldcodas listblocks llgrid loadping lst_btrk lst_conf lst_hdg lst_temp mpltest norotate opts plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp_mpl plotwtcal_mpl putnav refabs refabsbt rotate rotated run_adcpsect run_applyedit run_autoedit_npy run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_loaddb run_loadping run_lstconfig run_lsttemp run_matbincmd run_matfiles run_pingavg_npy run_plotter run_putnav run_py_codaseditsetup run_py_findpflags run_py_pingeditsetup run_pybincmd run_pygbin_npy run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scanbin_npy run_scandata run_scanping_npy run_setflags run_smoothr run_updategbin run_updatepygbin run_xducerxy scanping setflags smoothr timegrid timslip ubprint user_defined_headfunc write_codas_editdefaults write_ping_editdefaults write_timerange_file zapsetup 2011-08-18 20:27:50,572 DEBUG quick_adcp cwd is /home/data/EN497/proc/os75bb about to run these steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2011-08-18 20:27:50,572 DEBUG quick_adcp original fix file is a_en.gps 2011-08-18 20:27:50,572 DEBUG quick_adcp smoothed nav file is a_en_refsm.asc 2011-08-18 20:27:50,572 DEBUG quick_asect extracting matlab files for os75, bb pings 2011-08-18 20:27:50,591 DEBUG quick_subs found 225 files using wildcard expansion from "/home/data/EN497/raw/os75/*.raw" 2011-08-18 20:27:50,591 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/EN497/raw/os75/en2011_211_16030.raw ... 2011-08-18 20:27:50,591 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/EN497/raw/os75/en2011_211_16030.raw ... 2011-08-18 20:27:50,592 DEBUG quick_adcp Thu Aug 18 20:27:50 2011 running quick_adcp.py as follows: --cntfile /home/data/EN497/proc/os75bb/os75bb_qpy.cnt ----- adcpsect variables ------ cbasename contour dbname a_en dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 22 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2011 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ adjust_time 1 auto True beamangle 30 best_loggerdday_name unix_dday best_utcdday_name dday bindir /home/currents/programs/codas3/bin/lnx64 binos lnx64 btrk_step 1 cfgpath /home/data/EN497/proc/os75bb/config cntfile /home/data/EN497/proc/os75bb/os75bb_qpy.cnt commands None configtype python cruisename EN497 data_def vmadcp.def datadir /home/data/EN497/raw/os75 datafile_glob *.raw datatype uhdas dbname a_en dday_bailout None debug False diarystr diary quick_adcp.diary displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/EN497/raw/os75/en2011_211_16030.raw', '/home/data/EN497/raw/os75/en2011_211_21600.raw', '/home/data/EN497/raw/os75/en2011_211_28800.raw', '/home/data/EN497/raw/os75/en2011_211_36000.raw', '/home/data/EN497/raw/os75/en2011_211_43200.raw', '/home/data/EN497/raw/os75/en2011_211_50400.raw', '/home/data/EN497/raw/os75/en2011_211_57600.raw', '/home/data/EN497/raw/os75/en2011_211_64800.raw', '/home/data/EN497/raw/os75/en2011_211_72000.raw', '/home/data/EN497/raw/os75/en2011_211_79200.raw', 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'/home/data/EN497/raw/os75/en2011_228_57600.raw', '/home/data/EN497/raw/os75/en2011_228_64800.raw', '/home/data/EN497/raw/os75/en2011_228_72000.raw', '/home/data/EN497/raw/os75/en2011_228_79200.raw', '/home/data/EN497/raw/os75/en2011_229_00000.raw', '/home/data/EN497/raw/os75/en2011_229_07200.raw', '/home/data/EN497/raw/os75/en2011_229_14400.raw', '/home/data/EN497/raw/os75/en2011_229_21600.raw', '/home/data/EN497/raw/os75/en2011_229_28800.raw', '/home/data/EN497/raw/os75/en2011_229_36000.raw', '/home/data/EN497/raw/os75/en2011_229_43200.raw', '/home/data/EN497/raw/os75/en2011_229_50400.raw', '/home/data/EN497/raw/os75/en2011_229_57600.raw', '/home/data/EN497/raw/os75/en2011_229_64800.raw', '/home/data/EN497/raw/os75/en2011_229_72000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 22 fixfile a_en.gps frequency 75 gbin_style python gbindirbase /home/data/EN497/gbin hcorr_inst ashpaq2 help False hidedisplay True incremental True instname os75 jitter 15 max_BLKprofiles 399 max_search_depth 1000 maxrunsecs None min_filter_fraction 0.5 model os nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_en.gps overview False pgmin 50 ping_headcorr False pingtype bb post_headcorr None printformats png proc_engine python proc_yearbase 2011 progdir /home/currents/programs py_gbindirbase /home/data/EN497/gbin quiet False rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 setup_info False skip_avg True smfile a_en_refsm.asc sonar os75bb steps2rerun timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2011 configured to run the following steps: editsetup scandata avg_and_load setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles find_pflags 2011-08-18 20:27:50,593 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2011-08-18 20:27:50,593 DEBUG quick_run executing commands from /home/data/EN497/proc/os75bb/edit 2011-08-18 20:27:50,593 DEBUG quick_run setup.m exists. not replacing 2011-08-18 20:27:50,593 DEBUG quick_run asetup.m exists. not replacing 2011-08-18 20:27:50,593 DEBUG quick_run aflagit_setup.m exists. not replacing 2011-08-18 20:27:50,593 DEBUG quick_adcp about to run numpy scan, requiring python gbins 2011-08-18 20:27:50,593 DEBUG quick_npy Starting: scanping 2011-08-18 20:27:50,908 DEBUG quick_npy Ending: scanping 2011-08-18 20:27:50,909 DEBUG quick_subs start_end_time 2011/07/31 04:27:15 to 2011/07/31 04:52:27 2011-08-18 20:27:50,909 DEBUG quick_subs dd0: 211.185590 dd1: 211.203090 2011-08-18 20:27:50,909 DEBUG quick_adcp in quick_adcp.py: after scan; look for database times in /home/data/EN497/proc/os75bb 2011-08-18 20:27:50,909 DEBUG quick_adcp looking for database with adcpdb/a_en*.blk 2011-08-18 20:27:50,910 DEBUG quick_adcp database found: listing blocks 2011-08-18 20:27:50,910 DEBUG quick_subs removing a_endir.blk 2011-08-18 20:27:50,910 DEBUG quick_subs about to run mkblkdir 2011-08-18 20:27:50,910 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-08-18 20:27:50,911 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2011-08-18 20:27:50,925 DEBUG quick_subs database passes. 2011-08-18 20:27:50,925 DEBUG quick_subs start_end_time 2011/07/31 04:32:12 to 2011/08/18 19:57:14 2011-08-18 20:27:50,925 DEBUG quick_subs dd0: 211.189028 dd1: 229.831412 2011-08-18 20:27:50,926 DEBUG quick_adcp in quick_adcp.py before load, just looked for database times 2011-08-18 20:27:50,926 DEBUG quick_adcp origdb_time_range is 2011/07/31 04:32:12 to 2011/08/18 19:57:14 2011-08-18 20:27:50,926 DEBUG quick_adcp (211.189028 to 229.831412) 2011-08-18 20:27:50,926 DEBUG quick_run file load/ping_editparams.txt exists. not replacing 2011-08-18 20:27:50,926 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:50,926 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/load 2011-08-18 20:27:50,926 DEBUG quick_setup running python command "run_pingavg_npy" 2011-08-18 20:27:50,926 DEBUG quick_npy Starting: pingavg 2011-08-18 20:27:50,928 DEBUG quick_npy singleping editing parameters: 2011-08-18 20:27:50,929 DEBUG quick_npy bigtarget_mab_window : 11 2011-08-18 20:27:50,929 DEBUG quick_npy rl_endbin : 20 2011-08-18 20:27:50,929 DEBUG quick_npy max_search_depth : 1000 2011-08-18 20:27:50,929 DEBUG quick_npy cor_cutoff : 120 2011-08-18 20:27:50,929 DEBUG quick_npy ampfilt : 40 2011-08-18 20:27:50,929 DEBUG quick_npy bigtarget_lgb_margin : 0.500000 2011-08-18 20:27:50,929 DEBUG quick_npy rl_startbin : 2 2011-08-18 20:27:50,929 DEBUG quick_npy ecutoff : 1 2011-08-18 20:27:50,929 DEBUG quick_npy refavg_valcutoff : 1 2011-08-18 20:27:50,929 DEBUG quick_npy weakprof_percent : 30 2011-08-18 20:27:50,929 DEBUG quick_npy bigtarget_ampthresh : 55 2011-08-18 20:27:50,939 INFO pingavg Pingavg.run for time range 229.833343 to 229.852595 2011-08-18 20:27:50,969 DEBUG pingavg Chunk 1 of 1, 229.833343 to 229.852595 2011-08-18 20:27:50,969 DEBUG pingavg Nothing written 2011-08-18 20:27:50,969 DEBUG quick_npy wrote 0 averages 2011-08-18 20:27:50,970 DEBUG quick_npy Ending: pingavg 2011-08-18 20:27:50,970 DEBUG quick_subs in del_overlapping 2011-08-18 20:27:50,970 DEBUG quick_subs lastblock: 2011-08-18 20:27:50,970 DEBUG quick_subs 18 2011-08-18 20:27:50,971 DEBUG quick_subs lastcmd: 2011-08-18 20:27:50,971 DEBUG quick_subs 18 2011-08-18 20:27:50,971 DEBUG quick_subs delblks: 2011-08-18 20:27:50,971 DEBUG quick_subs [18] 2011-08-18 20:27:50,971 DEBUG quick_subs loadblks: 2011-08-18 20:27:50,971 DEBUG quick_subs [18] 2011-08-18 20:27:50,972 DEBUG quick_subs about to run mkblkdir 2011-08-18 20:27:50,972 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-08-18 20:27:50,972 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2011-08-18 20:27:50,986 DEBUG quick_subs database passes. 2011-08-18 20:27:50,986 DEBUG quick_subs start_end_time 2011/07/31 04:32:12 to 2011/08/17 21:27:12 2011-08-18 20:27:50,986 DEBUG quick_subs dd0: 211.189028 dd1: 228.893889 2011-08-18 20:27:50,987 DEBUG quick_run [18] 2011-08-18 20:27:50,987 DEBUG quick_run cmdlist 2011-08-18 20:27:50,987 DEBUG quick_run ['./ens_blk018.cmd'] 2011-08-18 20:27:50,990 INFO quick_run Warning: 1 files will be loaded; 18 already exist 2011-08-18 20:27:50,990 INFO quick_run Thu Aug 18 20:27:50 2011 2011-08-18 20:27:50,990 INFO quick_run about to load uhdas files 2011-08-18 20:27:50,991 INFO quick_run /home/data/EN497/raw/os75/en2011_211_16030.raw /home/data/EN497/raw/os75/en2011_211_21600.raw /home/data/EN497/raw/os75/en2011_211_28800.raw /home/data/EN497/raw/os75/en2011_211_36000.raw /home/data/EN497/raw/os75/en2011_211_43200.raw /home/data/EN497/raw/os75/en2011_211_50400.raw /home/data/EN497/raw/os75/en2011_211_57600.raw /home/data/EN497/raw/os75/en2011_211_64800.raw /home/data/EN497/raw/os75/en2011_211_72000.raw /home/data/EN497/raw/os75/en2011_211_79200.raw /home/data/EN497/raw/os75/en2011_212_00000.raw /home/data/EN497/raw/os75/en2011_212_07200.raw /home/data/EN497/raw/os75/en2011_212_14400.raw /home/data/EN497/raw/os75/en2011_212_21600.raw /home/data/EN497/raw/os75/en2011_212_28800.raw /home/data/EN497/raw/os75/en2011_212_36000.raw /home/data/EN497/raw/os75/en2011_212_43200.raw /home/data/EN497/raw/os75/en2011_212_50400.raw /home/data/EN497/raw/os75/en2011_212_57600.raw /home/data/EN497/raw/os75/en2011_212_64800.raw /home/data/EN497/raw/os75/en2011_212_72000.raw /home/data/EN497/raw/os75/en2011_212_79200.raw /home/data/EN497/raw/os75/en2011_213_00000.raw /home/data/EN497/raw/os75/en2011_213_07200.raw /home/data/EN497/raw/os75/en2011_213_14400.raw /home/data/EN497/raw/os75/en2011_213_21600.raw /home/data/EN497/raw/os75/en2011_213_28800.raw /home/data/EN497/raw/os75/en2011_213_36000.raw /home/data/EN497/raw/os75/en2011_213_43200.raw /home/data/EN497/raw/os75/en2011_213_50400.raw /home/data/EN497/raw/os75/en2011_213_57600.raw /home/data/EN497/raw/os75/en2011_213_64800.raw /home/data/EN497/raw/os75/en2011_213_72000.raw /home/data/EN497/raw/os75/en2011_213_79200.raw /home/data/EN497/raw/os75/en2011_214_00000.raw /home/data/EN497/raw/os75/en2011_214_07200.raw /home/data/EN497/raw/os75/en2011_214_14400.raw /home/data/EN497/raw/os75/en2011_214_21600.raw /home/data/EN497/raw/os75/en2011_214_28800.raw /home/data/EN497/raw/os75/en2011_214_36000.raw /home/data/EN497/raw/os75/en2011_214_43200.raw /home/data/EN497/raw/os75/en2011_214_50400.raw /home/data/EN497/raw/os75/en2011_214_57600.raw /home/data/EN497/raw/os75/en2011_214_64800.raw /home/data/EN497/raw/os75/en2011_214_72000.raw /home/data/EN497/raw/os75/en2011_214_79200.raw /home/data/EN497/raw/os75/en2011_215_00000.raw 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/home/data/EN497/raw/os75/en2011_216_72000.raw /home/data/EN497/raw/os75/en2011_216_79200.raw /home/data/EN497/raw/os75/en2011_217_00000.raw /home/data/EN497/raw/os75/en2011_217_07200.raw /home/data/EN497/raw/os75/en2011_217_14400.raw /home/data/EN497/raw/os75/en2011_217_21600.raw /home/data/EN497/raw/os75/en2011_217_28800.raw /home/data/EN497/raw/os75/en2011_217_36000.raw /home/data/EN497/raw/os75/en2011_217_43200.raw /home/data/EN497/raw/os75/en2011_217_50400.raw /home/data/EN497/raw/os75/en2011_217_57600.raw /home/data/EN497/raw/os75/en2011_217_64800.raw /home/data/EN497/raw/os75/en2011_217_72000.raw /home/data/EN497/raw/os75/en2011_217_79200.raw /home/data/EN497/raw/os75/en2011_218_00000.raw /home/data/EN497/raw/os75/en2011_218_07200.raw /home/data/EN497/raw/os75/en2011_218_14400.raw /home/data/EN497/raw/os75/en2011_218_21600.raw /home/data/EN497/raw/os75/en2011_218_28800.raw /home/data/EN497/raw/os75/en2011_218_36000.raw /home/data/EN497/raw/os75/en2011_218_43200.raw /home/data/EN497/raw/os75/en2011_218_50400.raw /home/data/EN497/raw/os75/en2011_218_57600.raw /home/data/EN497/raw/os75/en2011_218_64800.raw /home/data/EN497/raw/os75/en2011_218_72000.raw /home/data/EN497/raw/os75/en2011_218_79200.raw /home/data/EN497/raw/os75/en2011_219_00000.raw /home/data/EN497/raw/os75/en2011_219_07200.raw /home/data/EN497/raw/os75/en2011_219_14400.raw /home/data/EN497/raw/os75/en2011_219_21600.raw /home/data/EN497/raw/os75/en2011_219_28800.raw /home/data/EN497/raw/os75/en2011_219_36000.raw /home/data/EN497/raw/os75/en2011_219_43200.raw /home/data/EN497/raw/os75/en2011_219_50400.raw /home/data/EN497/raw/os75/en2011_219_57600.raw /home/data/EN497/raw/os75/en2011_219_64800.raw /home/data/EN497/raw/os75/en2011_219_72000.raw /home/data/EN497/raw/os75/en2011_219_79200.raw /home/data/EN497/raw/os75/en2011_220_00000.raw /home/data/EN497/raw/os75/en2011_220_07200.raw /home/data/EN497/raw/os75/en2011_220_14400.raw /home/data/EN497/raw/os75/en2011_220_21600.raw /home/data/EN497/raw/os75/en2011_220_28800.raw /home/data/EN497/raw/os75/en2011_220_36000.raw /home/data/EN497/raw/os75/en2011_220_43200.raw /home/data/EN497/raw/os75/en2011_220_50400.raw /home/data/EN497/raw/os75/en2011_220_57600.raw /home/data/EN497/raw/os75/en2011_220_64800.raw /home/data/EN497/raw/os75/en2011_220_72000.raw /home/data/EN497/raw/os75/en2011_220_79200.raw /home/data/EN497/raw/os75/en2011_221_00000.raw /home/data/EN497/raw/os75/en2011_221_07200.raw /home/data/EN497/raw/os75/en2011_221_14400.raw /home/data/EN497/raw/os75/en2011_221_21600.raw /home/data/EN497/raw/os75/en2011_221_28800.raw /home/data/EN497/raw/os75/en2011_221_36000.raw /home/data/EN497/raw/os75/en2011_221_43200.raw /home/data/EN497/raw/os75/en2011_221_50400.raw /home/data/EN497/raw/os75/en2011_221_57600.raw /home/data/EN497/raw/os75/en2011_221_64800.raw /home/data/EN497/raw/os75/en2011_221_72000.raw /home/data/EN497/raw/os75/en2011_221_79200.raw /home/data/EN497/raw/os75/en2011_222_00000.raw /home/data/EN497/raw/os75/en2011_222_07200.raw /home/data/EN497/raw/os75/en2011_222_14400.raw /home/data/EN497/raw/os75/en2011_222_21600.raw /home/data/EN497/raw/os75/en2011_222_28800.raw /home/data/EN497/raw/os75/en2011_222_36000.raw /home/data/EN497/raw/os75/en2011_222_43200.raw /home/data/EN497/raw/os75/en2011_222_50400.raw /home/data/EN497/raw/os75/en2011_222_57600.raw /home/data/EN497/raw/os75/en2011_222_64800.raw /home/data/EN497/raw/os75/en2011_222_72000.raw /home/data/EN497/raw/os75/en2011_222_79200.raw /home/data/EN497/raw/os75/en2011_223_00000.raw /home/data/EN497/raw/os75/en2011_223_07200.raw /home/data/EN497/raw/os75/en2011_223_14400.raw /home/data/EN497/raw/os75/en2011_223_21600.raw /home/data/EN497/raw/os75/en2011_223_28800.raw /home/data/EN497/raw/os75/en2011_223_36000.raw /home/data/EN497/raw/os75/en2011_223_43200.raw /home/data/EN497/raw/os75/en2011_223_50400.raw /home/data/EN497/raw/os75/en2011_223_57600.raw /home/data/EN497/raw/os75/en2011_223_64800.raw /home/data/EN497/raw/os75/en2011_223_72000.raw /home/data/EN497/raw/os75/en2011_223_79200.raw /home/data/EN497/raw/os75/en2011_224_00000.raw /home/data/EN497/raw/os75/en2011_224_07200.raw /home/data/EN497/raw/os75/en2011_224_14400.raw /home/data/EN497/raw/os75/en2011_224_21600.raw /home/data/EN497/raw/os75/en2011_224_28800.raw /home/data/EN497/raw/os75/en2011_224_36000.raw /home/data/EN497/raw/os75/en2011_224_43200.raw /home/data/EN497/raw/os75/en2011_224_50400.raw /home/data/EN497/raw/os75/en2011_224_57600.raw /home/data/EN497/raw/os75/en2011_224_64800.raw /home/data/EN497/raw/os75/en2011_224_72000.raw /home/data/EN497/raw/os75/en2011_224_79200.raw /home/data/EN497/raw/os75/en2011_225_00000.raw /home/data/EN497/raw/os75/en2011_225_07200.raw /home/data/EN497/raw/os75/en2011_225_14400.raw /home/data/EN497/raw/os75/en2011_225_21600.raw /home/data/EN497/raw/os75/en2011_225_28800.raw /home/data/EN497/raw/os75/en2011_225_36000.raw /home/data/EN497/raw/os75/en2011_225_43200.raw /home/data/EN497/raw/os75/en2011_225_50400.raw /home/data/EN497/raw/os75/en2011_225_57600.raw /home/data/EN497/raw/os75/en2011_225_64800.raw /home/data/EN497/raw/os75/en2011_225_72000.raw /home/data/EN497/raw/os75/en2011_225_79200.raw /home/data/EN497/raw/os75/en2011_226_00000.raw /home/data/EN497/raw/os75/en2011_226_07200.raw /home/data/EN497/raw/os75/en2011_226_14400.raw /home/data/EN497/raw/os75/en2011_226_21600.raw /home/data/EN497/raw/os75/en2011_226_28800.raw /home/data/EN497/raw/os75/en2011_226_36000.raw /home/data/EN497/raw/os75/en2011_226_43200.raw /home/data/EN497/raw/os75/en2011_226_50400.raw /home/data/EN497/raw/os75/en2011_226_57600.raw /home/data/EN497/raw/os75/en2011_226_64800.raw /home/data/EN497/raw/os75/en2011_226_72000.raw /home/data/EN497/raw/os75/en2011_226_79200.raw /home/data/EN497/raw/os75/en2011_227_00000.raw /home/data/EN497/raw/os75/en2011_227_07200.raw /home/data/EN497/raw/os75/en2011_227_14400.raw /home/data/EN497/raw/os75/en2011_227_21600.raw /home/data/EN497/raw/os75/en2011_227_28800.raw /home/data/EN497/raw/os75/en2011_227_36000.raw /home/data/EN497/raw/os75/en2011_227_43200.raw /home/data/EN497/raw/os75/en2011_227_50400.raw /home/data/EN497/raw/os75/en2011_227_57600.raw /home/data/EN497/raw/os75/en2011_227_64800.raw /home/data/EN497/raw/os75/en2011_227_72000.raw /home/data/EN497/raw/os75/en2011_227_79200.raw /home/data/EN497/raw/os75/en2011_228_00000.raw /home/data/EN497/raw/os75/en2011_228_07200.raw /home/data/EN497/raw/os75/en2011_228_14400.raw /home/data/EN497/raw/os75/en2011_228_21600.raw /home/data/EN497/raw/os75/en2011_228_28800.raw /home/data/EN497/raw/os75/en2011_228_36000.raw /home/data/EN497/raw/os75/en2011_228_43200.raw /home/data/EN497/raw/os75/en2011_228_50400.raw /home/data/EN497/raw/os75/en2011_228_57600.raw /home/data/EN497/raw/os75/en2011_228_64800.raw /home/data/EN497/raw/os75/en2011_228_72000.raw /home/data/EN497/raw/os75/en2011_228_79200.raw /home/data/EN497/raw/os75/en2011_229_00000.raw /home/data/EN497/raw/os75/en2011_229_07200.raw /home/data/EN497/raw/os75/en2011_229_14400.raw /home/data/EN497/raw/os75/en2011_229_21600.raw /home/data/EN497/raw/os75/en2011_229_28800.raw /home/data/EN497/raw/os75/en2011_229_36000.raw /home/data/EN497/raw/os75/en2011_229_43200.raw /home/data/EN497/raw/os75/en2011_229_50400.raw /home/data/EN497/raw/os75/en2011_229_57600.raw /home/data/EN497/raw/os75/en2011_229_64800.raw /home/data/EN497/raw/os75/en2011_229_72000.raw 2011-08-18 20:27:50,991 DEBUG quick_setup load/ldcodas.tmp exists 2011-08-18 20:27:50,991 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:50,991 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/load 2011-08-18 20:27:50,991 DEBUG quick_setup running python command "ldcodas" 2011-08-18 20:27:50,991 DEBUG quick_subs filling "thisload" timerange 2011-08-18 20:27:50,993 DEBUG quick_subs in ldcodas 2011-08-18 20:27:50,993 DEBUG quick_subs cmdlist: 2011-08-18 20:27:50,993 DEBUG quick_subs ['./ens_blk018.cmd'] 2011-08-18 20:27:50,994 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_en DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2011 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk018.cmd 2011-08-18 20:27:50,994 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/ldcodas ldcodas.tmp 2011-08-18 20:27:51,042 DEBUG quick_subs removing a_endir.blk 2011-08-18 20:27:51,043 DEBUG quick_subs about to run mkblkdir 2011-08-18 20:27:51,043 DEBUG quick_subs database still exists; rerunning mkdirblk 2011-08-18 20:27:51,043 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx64/mkblkdir mkblkdir.tmp 2011-08-18 20:27:51,057 DEBUG quick_subs database passes. 2011-08-18 20:27:51,058 DEBUG quick_subs start_end_time 2011/07/31 04:32:12 to 2011/08/18 20:27:14 2011-08-18 20:27:51,058 DEBUG quick_subs dd0: 211.189028 dd1: 229.852245 2011-08-18 20:27:51,058 INFO quick_adcp --------------------- 2011-08-18 20:27:51,058 INFO quick_adcp loaded_time_range is 2011/07/31 04:32:12 to 2011/08/18 20:27:14 2011-08-18 20:27:51,058 INFO quick_adcp (211.189028 to 229.852245) 2011-08-18 20:27:51,058 INFO quick_adcp origdb_time_range is 2011/07/31 04:32:12 to 2011/08/18 19:57:14 2011-08-18 20:27:51,059 INFO quick_adcp (211.189028 to 229.831412) 2011-08-18 20:27:51,059 INFO quick_adcp thisload_time_range is 2011/08/17 21:32:12 to 2011/08/18 20:27:14 2011-08-18 20:27:51,059 INFO quick_adcp (228.897361 to 228.897361) 2011-08-18 20:27:51,059 INFO quick_adcp --------------------- 2011-08-18 20:27:51,059 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:51,059 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/adcpdb 2011-08-18 20:27:51,059 DEBUG quick_setup running python command "lst_conf" 2011-08-18 20:27:51,059 DEBUG quick_subs dbname: a_en output: a_en.cnh time_ranges: all 2011-08-18 20:27:51,060 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_conf lst_conf.tmp 2011-08-18 20:27:51,533 DEBUG quick_setup found (in edit/asetup.m): 2011-08-18 20:27:51,533 DEBUG quick_setup config.beamangle is 30 2011-08-18 20:27:51,533 DEBUG quick_run file edit/codas_editparams.txt exists. not replacing 2011-08-18 20:27:51,533 DEBUG quick_run ------------ step 4: run setflags ------------- 2011-08-18 20:27:51,533 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:51,533 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/edit 2011-08-18 20:27:51,534 DEBUG quick_setup running python command "setflags" 2011-08-18 20:27:51,534 DEBUG quick_subs dbname: ../adcpdb/a_en pg_min: 50 set_range_bit time_ranges: all 2011-08-18 20:27:51,534 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2011-08-18 20:27:51,591 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2011-08-18 20:27:51,591 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:51,591 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:51,592 DEBUG quick_setup running python command "catnav" 2011-08-18 20:27:51,594 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2011-08-18 20:27:51,595 DEBUG quick_run hcorr_inst is ashpaq2 2011-08-18 20:27:51,595 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2011-08-18 20:27:51,595 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:51,595 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/cal/rotate 2011-08-18 20:27:51,595 DEBUG quick_setup running python command "lst_hdg" 2011-08-18 20:27:51,595 DEBUG quick_subs dbname: ../../adcpdb/a_en output: scn.hdg step_size= 1 year_base= 2011 time_ranges: all 2011-08-18 20:27:51,595 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_hdg lst_hdg.tmp 2011-08-18 20:27:51,635 DEBUG quick_mpl Starting plot: hcorr 2011-08-18 20:27:51,697 DEBUG quick_mplplots found 18.663216 days of data 2011-08-18 20:27:51,697 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2011-08-18 20:27:51,697 DEBUG quick_mplplots printing 5 pages 2011-08-18 20:27:52,408 DEBUG quick_mpl Ending plot: hcorr 2011-08-18 20:27:52,409 DEBUG quick_run ------------ step 7: rotate ------------- 2011-08-18 20:27:52,409 DEBUG quick_setup cal/rotate/norotate.tmp exists 2011-08-18 20:27:52,409 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:52,409 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/cal/rotate 2011-08-18 20:27:52,409 DEBUG quick_setup running python command "norotate" 2011-08-18 20:27:52,409 DEBUG quick_subs /* No rotation was done using the "rotate" command, but */ /* it is useful have the skeleton of a rotate.tmp file */ /* to edit, should the need arise. That is the purpose */ /* of this file. DB_NAME: ../../adcpdb/a_en LOG_FILE: rotate.log TIME_RANGE: 2011/07/31 04:32:12 to 2011/08/18 20:27:14 OPTION_LIST: water_and_bottom_track: year_base= 2011 /* time_angle_file: time_angle.ang */ amplitude= 1.0 angle_0= 0.0 end end 2011-08-18 20:27:52,410 DEBUG quick_setup about to run echo "writing dummy rotate file" 2011-08-18 20:27:52,416 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-08-18 20:27:52,416 DEBUG quick_setup nav/as_nav.tmp exists 2011-08-18 20:27:52,416 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:52,417 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:52,417 DEBUG quick_setup running python command "as_nav" 2011-08-18 20:27:52,417 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/07/31 04:32:12 to 2011/08/18 20:27:14 /* the whole time range */ 2011-08-18 20:27:52,417 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2011-08-18 20:27:52,493 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-08-18 20:27:52,493 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:52,493 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:52,493 DEBUG quick_setup running python command "refabs" 2011-08-18 20:27:52,494 DEBUG quick_subs fix_file_type: simple reference_file: a_en.nav fix_file: a_en.gps output: a_en.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-08-18 20:27:52,494 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2011-08-18 20:27:52,546 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-08-18 20:27:52,546 DEBUG quick_setup nav/smoothr.tmp exists 2011-08-18 20:27:52,546 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:52,546 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:52,546 DEBUG quick_setup running python command "smoothr" 2011-08-18 20:27:52,547 DEBUG quick_subs reference_file: a_en.nav refabs_output: a_en.ref output: a_en.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-08-18 20:27:52,547 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2011-08-18 20:27:52,802 DEBUG quick_adcp about to run numpy refsm 2011-08-18 20:27:52,802 DEBUG quick_npy Starting: refsm 2011-08-18 20:27:53,019 INFO nav dtmin = -0.50 dtmax = 0.50 2011-08-18 20:27:53,280 DEBUG quick_npy Ending: refsm 2011-08-18 20:27:53,280 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-08-18 20:27:53,281 DEBUG quick_setup nav/putnav.tmp exists 2011-08-18 20:27:53,281 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:53,281 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:53,281 DEBUG quick_setup running python command "putnav" 2011-08-18 20:27:53,281 DEBUG quick_subs dbname: ../adcpdb/a_en position_file: a_en_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-08-18 20:27:53,281 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2011-08-18 20:27:54,802 DEBUG quick_adcp plotting navigation 2011-08-18 20:27:54,802 DEBUG quick_mpl Starting plot: nav 2011-08-18 20:27:55,183 DEBUG quick_mpl Ending plot: nav 2011-08-18 20:27:55,183 DEBUG quick_mpl Starting plot: refl 2011-08-18 20:27:55,330 DEBUG quick_mplplots found 18.656258 days of data 2011-08-18 20:27:55,330 DEBUG quick_mplplots start day is 211.000000 2011-08-18 20:27:55,330 DEBUG quick_mplplots figures with 2.000000 days per page 2011-08-18 20:27:55,330 DEBUG quick_mplplots printing 10 pages 2011-08-18 20:27:55,331 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-08-18 20:27:55,331 INFO quick_mplplots startdd is 211.0 2011-08-18 20:27:55,331 INFO quick_mplplots dt is 2.0 2011-08-18 20:27:56,016 DEBUG quick_mpl Ending plot: refl 2011-08-18 20:27:56,017 DEBUG quick_run ------------ step 13: automatically find profile flags using python ------------- 2011-08-18 20:27:56,017 DEBUG quick_run find profile flags ------------ *** ------------- 2011-08-18 20:27:56,017 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:56,017 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/edit 2011-08-18 20:27:56,017 DEBUG quick_setup running python command "run_autoedit_npy" 2011-08-18 20:27:56,017 DEBUG quick_npy Starting: autoedit 2011-08-18 20:27:56,283 DEBUG quick_npy Ending: autoedit 2011-08-18 20:27:56,283 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2011-08-18 20:27:56,283 DEBUG quick_run starting in: /home/data/EN497/proc/os75bb 2011-08-18 20:27:56,283 DEBUG quick_run executing commands from: edit 2011-08-18 20:27:56,284 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/badbin ../adcpdb/a_en abadbin_tmp.asc 2011-08-18 20:27:56,295 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/set_lgb ../adcpdb/a_en 30 2011-08-18 20:27:56,303 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx64/setflags setflags.tmp 2011-08-18 20:27:56,358 DEBUG quick_run changing directories back to /home/data/EN497/proc/os75bb 2011-08-18 20:27:56,358 DEBUG quick_adcp step 15: rerun nav steps, redo reflayer plots 2011-08-18 20:27:56,358 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2011-08-18 20:27:56,358 DEBUG quick_setup nav/as_nav.tmp exists 2011-08-18 20:27:56,358 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:56,358 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:56,359 DEBUG quick_setup running python command "as_nav" 2011-08-18 20:27:56,359 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/07/31 04:32:12 to 2011/08/18 20:27:14 /* the whole time range */ 2011-08-18 20:27:56,359 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2011-08-18 20:27:56,435 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2011-08-18 20:27:56,435 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:56,435 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:56,435 DEBUG quick_setup running python command "refabs" 2011-08-18 20:27:56,435 DEBUG quick_subs fix_file_type: simple reference_file: a_en.nav fix_file: a_en.gps output: a_en.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 10 2011-08-18 20:27:56,436 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabs refabs.tmp 2011-08-18 20:27:56,489 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2011-08-18 20:27:56,489 DEBUG quick_setup nav/smoothr.tmp exists 2011-08-18 20:27:56,490 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:56,490 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:56,490 DEBUG quick_setup running python command "smoothr" 2011-08-18 20:27:56,490 DEBUG quick_subs reference_file: a_en.nav refabs_output: a_en.ref output: a_en.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2011-08-18 20:27:56,490 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/smoothr smoothr.tmp 2011-08-18 20:27:56,748 DEBUG quick_adcp running refsm 2011-08-18 20:27:56,748 DEBUG quick_npy Starting: refsm 2011-08-18 20:27:56,953 INFO nav dtmin = -0.50 dtmax = 0.50 2011-08-18 20:27:57,158 DEBUG quick_npy Ending: refsm 2011-08-18 20:27:57,158 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2011-08-18 20:27:57,158 DEBUG quick_setup nav/putnav.tmp exists 2011-08-18 20:27:57,158 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:57,158 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:57,158 DEBUG quick_setup running python command "putnav" 2011-08-18 20:27:57,158 DEBUG quick_subs dbname: ../adcpdb/a_en position_file: a_en_refsm.asc year_base= 2011 tolerance= 5 navigation_sources: gps end 2011-08-18 20:27:57,159 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/putnav putnav.tmp 2011-08-18 20:27:57,241 DEBUG quick_mpl Starting plot: nav 2011-08-18 20:27:57,631 DEBUG quick_mpl Ending plot: nav 2011-08-18 20:27:57,632 DEBUG quick_mpl Starting plot: refl 2011-08-18 20:27:57,778 DEBUG quick_mplplots found 18.656258 days of data 2011-08-18 20:27:57,778 DEBUG quick_mplplots start day is 211.000000 2011-08-18 20:27:57,779 DEBUG quick_mplplots figures with 2.000000 days per page 2011-08-18 20:27:57,779 DEBUG quick_mplplots printing 10 pages 2011-08-18 20:27:57,779 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2011-08-18 20:27:57,779 INFO quick_mplplots startdd is 211.0 2011-08-18 20:27:57,779 INFO quick_mplplots dt is 2.0 2011-08-18 20:27:58,477 DEBUG quick_mpl Ending plot: refl 2011-08-18 20:27:58,493 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2011-08-18 20:27:58,493 DEBUG quick_setup edit/lst_temp.tmp exists 2011-08-18 20:27:58,494 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:58,494 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/edit 2011-08-18 20:27:58,494 DEBUG quick_setup running python command "lst_temp" 2011-08-18 20:27:58,494 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en.tem step_size= 1 year_base= 2011 time_ranges: all 2011-08-18 20:27:58,494 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_temp lst_temp.tmp 2011-08-18 20:27:58,545 DEBUG quick_mpl Starting plot: temp 2011-08-18 20:27:58,596 DEBUG quick_mplplots plotting 5376 points 2011-08-18 20:27:58,895 DEBUG quick_mpl Ending plot: temp 2011-08-18 20:27:58,896 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2011-08-18 20:27:58,896 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2011-08-18 20:27:58,896 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:58,896 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/cal/botmtrk 2011-08-18 20:27:58,896 DEBUG quick_setup running python command "lst_btrk" 2011-08-18 20:27:58,896 DEBUG quick_subs dbname: ../../adcpdb/a_en output: a_en.btm step_size= 1 year_base= 2011 time_ranges: 2011/07/31 04:32:12 to 2011/08/18 20:27:14 /* whole time range */ 2011-08-18 20:27:58,896 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/lst_btrk lst_btrk.tmp 2011-08-18 20:27:58,917 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2011-08-18 20:27:58,918 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:58,918 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/cal/botmtrk 2011-08-18 20:27:58,918 DEBUG quick_setup running python command "refabsbt" 2011-08-18 20:27:58,918 DEBUG quick_subs fix_file_type: simple reference_file: a_en.btm fix_file: ../../nav/a_en.gps output: a_en.ref year_base= 2011 ensemble_length= 300 gap_tolerance= 60 2011-08-18 20:27:58,918 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/refabsbt refabsbt.tmp 2011-08-18 20:27:58,926 DEBUG quick_mpl Starting plot: btcal 2011-08-18 20:27:58,927 DEBUG quick_mplplots No data in a_en.btm 2011-08-18 20:27:58,927 DEBUG quick_mplplots Returning from Btplot with no output 2011-08-18 20:27:58,927 DEBUG quick_mpl Ending plot: btcal 2011-08-18 20:27:58,927 DEBUG quick_setup nav/as_nav.tmp exists 2011-08-18 20:27:58,927 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:58,927 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/nav 2011-08-18 20:27:58,927 DEBUG quick_setup running python command "as_nav" 2011-08-18 20:27:58,928 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2011 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2011/07/31 04:32:12 to 2011/08/18 20:27:14 /* the whole time range */ 2011-08-18 20:27:58,968 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_nav.tmp 2011-08-18 20:27:59,234 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2011-08-18 20:27:59,234 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:27:59,235 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/cal/watertrk 2011-08-18 20:27:59,235 DEBUG quick_setup running python command "timslip" 2011-08-18 20:27:59,235 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_en.gps reference_file: ../../nav/a_en.nav output_file: a_en_7.cal year_base= 2011 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2011-08-18 20:27:59,235 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timslip timslip.tmp 2011-08-18 20:27:59,259 DEBUG quick_mpl Starting plot: wtcal 2011-08-18 20:27:59,262 DEBUG quick_mplplots Found 59 calibration points 2011-08-18 20:28:00,029 DEBUG quick_mpl Ending plot: wtcal 2011-08-18 20:28:00,030 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2011-08-18 20:28:00,030 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:28:00,030 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/vector 2011-08-18 20:28:00,030 DEBUG quick_setup running python command "timegrid" 2011-08-18 20:28:00,030 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_en.tmp 2011-08-18 20:28:00,039 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:28:00,039 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/vector 2011-08-18 20:28:00,039 DEBUG quick_setup running python command "as_vect" 2011-08-18 20:28:00,039 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_vect.tmp 2011-08-18 20:28:00,136 DEBUG quick_asect done making vector matfiles 2011-08-18 20:28:00,137 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:28:00,137 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/contour 2011-08-18 20:28:00,137 DEBUG quick_setup running python command "timegrid" 2011-08-18 20:28:00,137 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/timegrid a_en.tmp 2011-08-18 20:28:00,149 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:28:00,149 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/contour 2011-08-18 20:28:00,149 DEBUG quick_setup running python command "as_cont" 2011-08-18 20:28:00,149 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx64/adcpsect as_cont.tmp 2011-08-18 20:28:00,295 DEBUG quick_setup starting in /home/data/EN497/proc/os75bb 2011-08-18 20:28:00,295 DEBUG quick_setup executing commands from /home/data/EN497/proc/os75bb/contour 2011-08-18 20:28:00,295 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_en 2011-08-18 20:28:00,780 DEBUG quick_asect done running getmat with "allbins" 2011-08-18 20:28:00,800 INFO root copying NOFIG to /home/adcp/www/figures/os75bb_hcorr_plot.png 2011-08-18 20:28:00,800 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75bb_hcorr_plot_thumb.png 2011-08-18 20:28:00,800 DEBUG root matfile is contour/contour_uv.mat 2011-08-18 20:28:00,809 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75bb_cont_uv.mat 2011-08-18 20:28:00,809 DEBUG root matfile is vector/vector_uv.mat 2011-08-18 20:28:00,810 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75bb_vect_uv.mat 2011-08-18 20:28:00,810 DEBUG root matfile is contour/contour_xy.mat 2011-08-18 20:28:00,811 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75bb_cont_xy.mat 2011-08-18 20:28:00,811 DEBUG root matfile is vector/vector_xy.mat 2011-08-18 20:28:00,811 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75bb_vect_xy.mat 2011-08-18 20:28:00,811 DEBUG root about to copy file edit/a_en.tem to /home/adcp/www/data/os75bb_temp.asc 2011-08-18 20:28:00,812 INFO root copying edit/a_en.tem to /home/adcp/www/data/os75bb_temp.asc 2011-08-18 20:28:01,834 DEBUG root about to copy netcdf file /home/data/EN497/proc/os75bb/contour/os75bb.nc to /home/adcp/www/data/os75bb.nc 2011-08-18 20:28:01,859 INFO root copying edit/a_en.tem to /home/adcp/www/data/os75bb.nc 2011-08-18 20:28:01,898 INFO root generating pingstats for os75bb 2011-08-18 20:28:01,898 INFO root Ending quick_adcp.py