2010-09-17 17:16:52,195 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype bb --cfgbase EN483 --cruisename EN483 --instclass wh --instname wh300 --dbname a_en --datatype uhdas --datadir /home/data/EN483/raw/wh300 --cfgpath /home/data/EN483/proc/wh300/config --ens_len 120 --ping_headcorr --hcorr_inst ashpaq2 --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto 2010-09-17 17:16:52,196 DEBUG quick_adcp progdir = /home/currents/programs 2010-09-17 17:16:52,197 DEBUG quick_adcp binos = lnx 2010-09-17 17:16:52,197 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-09-17 17:16:52,197 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-09-17 17:16:52,197 DEBUG quick_setup processing data logged with uhdas: 2010-09-17 17:16:52,197 DEBUG quick_setup datatype is uhdas 2010-09-17 17:16:52,197 DEBUG quick_setup pingtype is bb 2010-09-17 17:16:52,197 DEBUG quick_setup instclass is wh 2010-09-17 17:16:52,197 DEBUG quick_setup no post-processing heading correction will be used 2010-09-17 17:16:52,197 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-09-17 17:16:52,207 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'EN483',... 'cfgpath' , '/home/data/EN483/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-09-17 17:16:52,207 DEBUG quick_setup ------- starting Matlab engine ------- 2010-09-17 17:16:52,207 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-09-17 17:16:52,208 DEBUG call_matlab starting to wait for initial prompt 2010-09-17 17:16:52,762 DEBUG call_matlab received initial prompt 2010-09-17 17:16:52,893 DEBUG quick_adcp cwd is /home/data/EN483/proc/wh300 about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-09-17 17:16:52,894 DEBUG quick_adcp original fix file is a_en.gps 2010-09-17 17:16:52,894 DEBUG quick_adcp smoothed nav file is refsm.sm 2010-09-17 17:16:52,894 DEBUG quick_asect extracting matlab files for wh300, bb pings 2010-09-17 17:16:52,961 DEBUG quick_subs found 21 files using wildcard expansion from "/home/data/EN483/raw/wh300/*.raw" 2010-09-17 17:16:52,961 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/EN483/raw/wh300/en2010_250_68232.raw /home/data/EN483/raw/wh300/en2010_250_72000.raw /home/data/EN483/raw/wh300/en2010_250_79200.raw /home/data/EN483/raw/wh300/en2010_251_21766.raw /home/data/EN483/raw/wh300/en2010_251_28800.raw /home/data/EN483/raw/wh300/en2010_251_36000.raw /home/data/EN483/raw/wh300/en2010_251_43200.raw /home/data/EN483/raw/wh300/en2010_252_47550.raw /home/data/EN483/raw/wh300/en2010_252_50400.raw /home/data/EN483/raw/wh300/en2010_252_57600.raw /home/data/EN483/raw/wh300/en2010_258_05547.raw /home/data/EN483/raw/wh300/en2010_258_07200.raw /home/data/EN483/raw/wh300/en2010_259_00313.raw /home/data/EN483/raw/wh300/en2010_259_07200.raw /home/data/EN483/raw/wh300/en2010_259_14400.raw /home/data/EN483/raw/wh300/en2010_259_21600.raw /home/data/EN483/raw/wh300/en2010_259_28800.raw /home/data/EN483/raw/wh300/en2010_259_36000.raw /home/data/EN483/raw/wh300/en2010_259_43200.raw /home/data/EN483/raw/wh300/en2010_259_54988.raw /home/data/EN483/raw/wh300/en2010_259_57600.raw 2010-09-17 17:16:52,961 DEBUG quick_adcp LASTFILES invoked. using only 21 files from end of filelist 2010-09-17 17:16:52,962 DEBUG quick_adcp using delblks = 1 2010-09-17 17:16:52,962 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/EN483/raw/wh300/en2010_250_68232.raw /home/data/EN483/raw/wh300/en2010_250_72000.raw /home/data/EN483/raw/wh300/en2010_250_79200.raw /home/data/EN483/raw/wh300/en2010_251_21766.raw /home/data/EN483/raw/wh300/en2010_251_28800.raw /home/data/EN483/raw/wh300/en2010_251_36000.raw /home/data/EN483/raw/wh300/en2010_251_43200.raw /home/data/EN483/raw/wh300/en2010_252_47550.raw /home/data/EN483/raw/wh300/en2010_252_50400.raw /home/data/EN483/raw/wh300/en2010_252_57600.raw /home/data/EN483/raw/wh300/en2010_258_05547.raw /home/data/EN483/raw/wh300/en2010_258_07200.raw /home/data/EN483/raw/wh300/en2010_259_00313.raw /home/data/EN483/raw/wh300/en2010_259_07200.raw /home/data/EN483/raw/wh300/en2010_259_14400.raw /home/data/EN483/raw/wh300/en2010_259_21600.raw /home/data/EN483/raw/wh300/en2010_259_28800.raw /home/data/EN483/raw/wh300/en2010_259_36000.raw /home/data/EN483/raw/wh300/en2010_259_43200.raw /home/data/EN483/raw/wh300/en2010_259_54988.raw /home/data/EN483/raw/wh300/en2010_259_57600.raw 2010-09-17 17:16:52,962 DEBUG quick_adcp Fri Sep 17 17:16:52 2010 running quick_adcp.py as follows: --cntfile /home/data/EN483/proc/wh300/wh300_qpy.cnt ----- adcpsect variables ------ afilebase a_en cbasename contour dbname a_en dbpath ../adcpdb deeper_boundaries [40, 60, 80, 100, 120] firstdepth 14 gridnum 80 increment 2 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_en allow_reload True auto True beamangle 20 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase EN483 cfgpath /home/data/EN483/proc/wh300/config cntfile /home/data/EN483/proc/wh300/wh300_qpy.cnt commands None cruisename EN483 data_def vmadcp.def datadir /home/data/EN483/raw/wh300 datafile_glob *.raw datatype uhdas dbname a_en dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 120 ensgyrorbin False expert None filelist ['/home/data/EN483/raw/wh300/en2010_250_68232.raw', '/home/data/EN483/raw/wh300/en2010_250_72000.raw', '/home/data/EN483/raw/wh300/en2010_250_79200.raw', '/home/data/EN483/raw/wh300/en2010_251_21766.raw', '/home/data/EN483/raw/wh300/en2010_251_28800.raw', '/home/data/EN483/raw/wh300/en2010_251_36000.raw', '/home/data/EN483/raw/wh300/en2010_251_43200.raw', '/home/data/EN483/raw/wh300/en2010_252_47550.raw', '/home/data/EN483/raw/wh300/en2010_252_50400.raw', '/home/data/EN483/raw/wh300/en2010_252_57600.raw', '/home/data/EN483/raw/wh300/en2010_258_05547.raw', '/home/data/EN483/raw/wh300/en2010_258_07200.raw', '/home/data/EN483/raw/wh300/en2010_259_00313.raw', '/home/data/EN483/raw/wh300/en2010_259_07200.raw', '/home/data/EN483/raw/wh300/en2010_259_14400.raw', '/home/data/EN483/raw/wh300/en2010_259_21600.raw', '/home/data/EN483/raw/wh300/en2010_259_28800.raw', '/home/data/EN483/raw/wh300/en2010_259_36000.raw', '/home/data/EN483/raw/wh300/en2010_259_43200.raw', '/home/data/EN483/raw/wh300/en2010_259_54988.raw', '/home/data/EN483/raw/wh300/en2010_259_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 14 fixfile a_en.gps hcorr_inst ashpaq2 head_func None help False hidedisplay True howto_lta False howto_ping False instclass wh instname wh300 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'EN483',... 'cfgpath' , '/home/data/EN483/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_en.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False proc_yearbase 2010 procdir wh300 progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/EN483/raw/wh300/en2010_250_68232.raw', '/home/data/EN483/raw/wh300/en2010_250_72000.raw', '/home/data/EN483/raw/wh300/en2010_250_79200.raw', '/home/data/EN483/raw/wh300/en2010_251_21766.raw', '/home/data/EN483/raw/wh300/en2010_251_28800.raw', '/home/data/EN483/raw/wh300/en2010_251_36000.raw', '/home/data/EN483/raw/wh300/en2010_251_43200.raw', '/home/data/EN483/raw/wh300/en2010_252_47550.raw', '/home/data/EN483/raw/wh300/en2010_252_50400.raw', '/home/data/EN483/raw/wh300/en2010_252_57600.raw', '/home/data/EN483/raw/wh300/en2010_258_05547.raw', '/home/data/EN483/raw/wh300/en2010_258_07200.raw', '/home/data/EN483/raw/wh300/en2010_259_00313.raw', '/home/data/EN483/raw/wh300/en2010_259_07200.raw', '/home/data/EN483/raw/wh300/en2010_259_14400.raw', '/home/data/EN483/raw/wh300/en2010_259_21600.raw', '/home/data/EN483/raw/wh300/en2010_259_28800.raw', '/home/data/EN483/raw/wh300/en2010_259_36000.raw', '/home/data/EN483/raw/wh300/en2010_259_43200.raw', '/home/data/EN483/raw/wh300/en2010_259_54988.raw', '/home/data/EN483/raw/wh300/en2010_259_57600.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-09-17 17:16:52,962 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-09-17 17:16:52,963 DEBUG quick_run scanning files for time ranges... 2010-09-17 17:16:52,963 DEBUG quick_setup starting in /home/data/EN483/proc/wh300/scan 2010-09-17 17:16:52,963 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/scan 2010-09-17 17:16:52,963 DEBUG quick_setup running python command "method" 2010-09-17 17:16:52,963 DEBUG call_matlab --> clear all 2010-09-17 17:16:52,966 DEBUG call_matlab <-- >> 2010-09-17 17:16:52,966 DEBUG call_matlab --> close all 2010-09-17 17:16:53,003 DEBUG call_matlab <-- >> 2010-09-17 17:16:53,003 DEBUG call_matlab --> cd /home/data/EN483/proc/wh300/scan 2010-09-17 17:16:53,004 DEBUG call_matlab <-- >> 2010-09-17 17:16:53,004 DEBUG call_matlab --> scan_tmp 2010-09-17 17:16:53,459 DEBUG call_matlab <-- getting config files from "/home/data/EN483/proc/wh300/config" running "EN483_cfg.m" running "EN483_proc.m" writing scan info to a_en.scn >> 2010-09-17 17:16:53,460 DEBUG quick_run writing time range from a_en.scn to a_en.tr 2010-09-17 17:16:53,460 DEBUG quick_run getting scan time range 2010-09-17 17:16:53,460 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,460 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/scan 2010-09-17 17:16:53,460 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,460 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,461 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,462 DEBUG quick_subs start_end_time 2010/09/08 18:57:13 to 2010/09/17 17:15:10 2010-09-17 17:16:53,462 DEBUG quick_subs dd0: 250.789734 dd1: 259.718866 2010-09-17 17:16:53,462 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/EN483/proc/wh300 2010-09-17 17:16:53,462 DEBUG quick_adcp looking for database with adcpdb/a_en*.blk 2010-09-17 17:16:53,463 DEBUG quick_adcp database found: listing blocks 2010-09-17 17:16:53,463 DEBUG quick_subs removing a_endir.blk 2010-09-17 17:16:53,463 DEBUG quick_subs about to run mkblkdir 2010-09-17 17:16:53,463 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-17 17:16:53,463 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-17 17:16:53,469 DEBUG quick_subs database passes. 2010-09-17 17:16:53,469 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-09-17 17:16:53,469 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,469 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,469 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,470 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,470 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,470 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 16:44:51 2010-09-17 17:16:53,470 DEBUG quick_subs dd0: 250.791146 dd1: 259.697812 2010-09-17 17:16:53,470 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-09-17 17:16:53,470 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,470 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,471 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,471 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,471 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,471 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 16:44:51 2010-09-17 17:16:53,471 DEBUG quick_subs dd0: 250.791146 dd1: 259.697812 2010-09-17 17:16:53,471 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-09-17 17:16:53,471 DEBUG quick_adcp origdb_time_range is 2010/09/08 18:59:15 to 2010/09/17 16:44:51 2010-09-17 17:16:53,472 DEBUG quick_adcp (250.791146 to 259.697812) 2010-09-17 17:16:53,472 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-09-17 17:16:53,472 DEBUG quick_subs getting current (remaining after deletion) database times 2010-09-17 17:16:53,472 DEBUG quick_subs ['adcpdb/a_en007.blk', 'adcpdb/a_en008.blk', 'adcpdb/a_en002.blk', 'adcpdb/a_endir.blk', 'adcpdb/a_en005.blk', 'adcpdb/a_en006.blk', 'adcpdb/a_en003.blk', 'adcpdb/a_en009.blk', 'adcpdb/a_en001.blk', 'adcpdb/a_en004.blk'] 2010-09-17 17:16:53,472 DEBUG quick_subs length is 10 2010-09-17 17:16:53,472 DEBUG quick_subs removing a_endir.blk 2010-09-17 17:16:53,472 DEBUG quick_subs about to run mkblkdir 2010-09-17 17:16:53,472 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-17 17:16:53,473 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-17 17:16:53,478 DEBUG quick_subs database passes. 2010-09-17 17:16:53,478 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-09-17 17:16:53,478 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,479 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,479 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,479 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,479 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,479 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 16:44:51 2010-09-17 17:16:53,479 DEBUG quick_subs dd0: 250.791146 dd1: 259.697812 2010-09-17 17:16:53,479 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,480 DEBUG quick_subs reading time range 2010-09-17 17:16:53,480 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 16:44:51 2010-09-17 17:16:53,480 DEBUG quick_subs dd0: 250.791146 dd1: 259.697812 2010-09-17 17:16:53,480 INFO quick_subs Fri Sep 17 17:16:53 2010 2010-09-17 17:16:53,480 INFO quick_subs checking database time range by listblk 2010-09-17 17:16:53,480 DEBUG quick_subs removing a_endir.blk 2010-09-17 17:16:53,480 DEBUG quick_subs about to run mkblkdir 2010-09-17 17:16:53,481 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-17 17:16:53,481 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-17 17:16:53,486 DEBUG quick_subs database passes. 2010-09-17 17:16:53,486 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-09-17 17:16:53,487 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,487 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,487 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,487 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,487 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,487 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 16:44:51 2010-09-17 17:16:53,487 DEBUG quick_subs dd0: 250.791146 dd1: 259.697812 2010-09-17 17:16:53,488 INFO quick_subs found line /* 0 n= 119 a_en001.blk */ 2010/09/08 18:59:15 to 2010/09/08 22:55:56 2010-09-17 17:16:53,489 INFO quick_subs found line /* 1 n= 146 a_en002.blk */ 2010/09/09 06:04:49 to 2010/09/09 10:56:10 2010-09-17 17:16:53,489 INFO quick_subs found line /* 2 n= 71 a_en003.blk */ 2010/09/09 10:58:10 to 2010/09/09 13:18:32 2010-09-17 17:16:53,489 INFO quick_subs found line /* 3 n= 98 a_en004.blk */ 2010/09/10 13:14:32 to 2010/09/10 16:29:03 2010-09-17 17:16:53,489 INFO quick_subs found line /* 4 n= 32 a_en005.blk */ 2010/09/16 01:34:29 to 2010/09/16 02:36:21 2010-09-17 17:16:53,489 INFO quick_subs found line /* 5 n= 146 a_en006.blk */ 2010/09/17 00:07:15 to 2010/09/17 04:57:45 2010-09-17 17:16:53,489 INFO quick_subs found line /* 6 n= 146 a_en007.blk */ 2010/09/17 04:59:46 to 2010/09/17 09:51:06 2010-09-17 17:16:53,489 INFO quick_subs found line /* 7 n= 86 a_en008.blk */ 2010/09/17 09:53:06 to 2010/09/17 12:43:35 2010-09-17 17:16:53,489 INFO quick_subs found line /* 8 n= 44 a_en009.blk */ 2010/09/17 15:18:30 to 2010/09/17 16:44:51 2010-09-17 17:16:53,489 INFO quick_subs scan data start at 250.7897338 2010-09-17 17:16:53,490 INFO quick_subs scan time range: 2010/09/08 18:57:13 to 2010/09/17 17:15:10 2010-09-17 17:16:53,490 INFO quick_subs codasdb ends at 259.6978125 (2010/09/17 16:44:51) 2010-09-17 17:16:53,490 DEBUG quick_subs ... changed dirs, in /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,490 DEBUG quick_subs deleting these files: ['a_en009.blk'] 2010-09-17 17:16:53,490 DEBUG quick_subs getting current (remaining after deletion) database times 2010-09-17 17:16:53,490 DEBUG quick_subs ['adcpdb/a_en007.blk', 'adcpdb/a_en008.blk', 'adcpdb/a_en002.blk', 'adcpdb/a_en005.blk', 'adcpdb/a_en006.blk', 'adcpdb/a_en003.blk', 'adcpdb/a_en001.blk', 'adcpdb/a_en004.blk'] 2010-09-17 17:16:53,491 DEBUG quick_subs length is 8 2010-09-17 17:16:53,491 DEBUG quick_subs about to run mkblkdir 2010-09-17 17:16:53,491 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-17 17:16:53,491 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-17 17:16:53,496 DEBUG quick_subs database passes. 2010-09-17 17:16:53,496 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-09-17 17:16:53,496 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,497 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,497 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,497 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,497 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,497 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 12:43:35 2010-09-17 17:16:53,497 DEBUG quick_subs dd0: 250.791146 dd1: 259.530266 2010-09-17 17:16:53,497 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,498 DEBUG quick_subs reading time range 2010-09-17 17:16:53,498 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 12:43:35 2010-09-17 17:16:53,498 DEBUG quick_subs dd0: 250.791146 dd1: 259.530266 2010-09-17 17:16:53,498 DEBUG quick_subs codas database currently goes from 2010/09/08 18:59:15 to 2010/09/17 12:43:35 2010-09-17 17:16:53,498 DEBUG quick_subs (250.791146 to 259.530266) 2010-09-17 17:16:53,498 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008 2010-09-17 17:16:53,499 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 2010-09-17 17:16:53,499 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008'] 2010-09-17 17:16:53,499 DEBUG quick_subs checked: unloaded blkstrs: ['009'] 2010-09-17 17:16:53,499 DEBUG quick_subs first unloaded file is load/ens_blk009.cmd 2010-09-17 17:16:53,500 DEBUG quick_subs data goes from 2010/09/17 15:18:30 to 2010/09/17 17:15:10 2010-09-17 17:16:53,500 DEBUG quick_subs (259.637847 to 259.718866) 2010-09-17 17:16:53,500 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/EN483/raw/wh300/en2010_250_68232.raw /home/data/EN483/raw/wh300/en2010_250_72000.raw /home/data/EN483/raw/wh300/en2010_250_79200.raw /home/data/EN483/raw/wh300/en2010_251_21766.raw /home/data/EN483/raw/wh300/en2010_251_28800.raw /home/data/EN483/raw/wh300/en2010_251_36000.raw /home/data/EN483/raw/wh300/en2010_251_43200.raw /home/data/EN483/raw/wh300/en2010_252_47550.raw /home/data/EN483/raw/wh300/en2010_252_50400.raw /home/data/EN483/raw/wh300/en2010_252_57600.raw /home/data/EN483/raw/wh300/en2010_258_05547.raw /home/data/EN483/raw/wh300/en2010_258_07200.raw /home/data/EN483/raw/wh300/en2010_259_00313.raw /home/data/EN483/raw/wh300/en2010_259_07200.raw /home/data/EN483/raw/wh300/en2010_259_14400.raw /home/data/EN483/raw/wh300/en2010_259_21600.raw /home/data/EN483/raw/wh300/en2010_259_28800.raw /home/data/EN483/raw/wh300/en2010_259_36000.raw /home/data/EN483/raw/wh300/en2010_259_43200.raw /home/data/EN483/raw/wh300/en2010_259_54988.raw /home/data/EN483/raw/wh300/en2010_259_57600.raw 2010-09-17 17:16:53,500 INFO quick_run Fri Sep 17 17:16:53 2010 2010-09-17 17:16:53,500 INFO quick_run about to load uhdas files 2010-09-17 17:16:53,500 INFO quick_run /home/data/EN483/raw/wh300/en2010_250_68232.raw /home/data/EN483/raw/wh300/en2010_250_72000.raw /home/data/EN483/raw/wh300/en2010_250_79200.raw /home/data/EN483/raw/wh300/en2010_251_21766.raw /home/data/EN483/raw/wh300/en2010_251_28800.raw /home/data/EN483/raw/wh300/en2010_251_36000.raw /home/data/EN483/raw/wh300/en2010_251_43200.raw /home/data/EN483/raw/wh300/en2010_252_47550.raw /home/data/EN483/raw/wh300/en2010_252_50400.raw /home/data/EN483/raw/wh300/en2010_252_57600.raw /home/data/EN483/raw/wh300/en2010_258_05547.raw /home/data/EN483/raw/wh300/en2010_258_07200.raw /home/data/EN483/raw/wh300/en2010_259_00313.raw /home/data/EN483/raw/wh300/en2010_259_07200.raw /home/data/EN483/raw/wh300/en2010_259_14400.raw /home/data/EN483/raw/wh300/en2010_259_21600.raw /home/data/EN483/raw/wh300/en2010_259_28800.raw /home/data/EN483/raw/wh300/en2010_259_36000.raw /home/data/EN483/raw/wh300/en2010_259_43200.raw /home/data/EN483/raw/wh300/en2010_259_54988.raw /home/data/EN483/raw/wh300/en2010_259_57600.raw 2010-09-17 17:16:53,500 DEBUG quick_setup load/ldcodas.tmp exists 2010-09-17 17:16:53,500 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,500 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/load 2010-09-17 17:16:53,501 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,501 DEBUG quick_subs in /home/data/EN483/proc/wh300/load 2010-09-17 17:16:53,501 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008'] 2010-09-17 17:16:53,501 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009'] 2010-09-17 17:16:53,501 DEBUG quick_subs starttime is 2010/09/17 15:18:30 2010-09-17 17:16:53,502 DEBUG quick_subs RESETTING thisload_time_range 2010-09-17 17:16:53,502 DEBUG quick_subs time range of data to be loaded: 2010/09/17 15:18:30 to 2010/09/17 17:15:10 2010-09-17 17:16:53,502 DEBUG quick_subs data startdd 259.637847 data enddd 259.718866 2010-09-17 17:16:53,502 DEBUG quick_subs about to load from these cmd files ['ens_blk009.cmd'] 2010-09-17 17:16:53,502 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_en DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk009.cmd 2010-09-17 17:16:53,502 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-09-17 17:16:53,515 DEBUG quick_subs removing a_endir.blk 2010-09-17 17:16:53,516 DEBUG quick_subs about to run mkblkdir 2010-09-17 17:16:53,516 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-09-17 17:16:53,516 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-09-17 17:16:53,521 DEBUG quick_subs database passes. 2010-09-17 17:16:53,521 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-09-17 17:16:53,521 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,522 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,522 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,522 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,522 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,522 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 17:14:58 2010-09-17 17:16:53,522 DEBUG quick_subs dd0: 250.791146 dd1: 259.718727 2010-09-17 17:16:53,523 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-09-17 17:16:53,523 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,523 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,523 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,523 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-09-17 17:16:53,523 DEBUG quick_subs extracting time range 2010-09-17 17:16:53,523 DEBUG quick_subs start_end_time 2010/09/08 18:59:15 to 2010/09/17 17:14:58 2010-09-17 17:16:53,523 DEBUG quick_subs dd0: 250.791146 dd1: 259.718727 2010-09-17 17:16:53,524 DEBUG quick_adcp loaded_time_range is 2010/09/08 18:59:15 to 2010/09/17 17:14:58 2010-09-17 17:16:53,524 DEBUG quick_adcp (250.791146 to 259.718727) 2010-09-17 17:16:53,524 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,524 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/adcpdb 2010-09-17 17:16:53,524 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,524 DEBUG quick_subs dbname: a_en output: a_en.cnh time_ranges: all 2010-09-17 17:16:53,524 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-09-17 17:16:53,531 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-09-17 17:16:53,531 DEBUG quick_run executing commands from /home/data/EN483/proc/wh300/edit 2010-09-17 17:16:53,531 DEBUG quick_run setup.m exists. not replacing 2010-09-17 17:16:53,531 DEBUG quick_run asetup.m exists. not replacing 2010-09-17 17:16:53,531 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-09-17 17:16:53,531 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-09-17 17:16:53,531 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,531 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/edit 2010-09-17 17:16:53,532 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,532 DEBUG quick_subs dbname: ../adcpdb/a_en pg_min: 50 set_range_bit time_ranges: all 2010-09-17 17:16:53,532 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-09-17 17:16:53,542 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-09-17 17:16:53,543 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,543 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:53,543 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,544 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-09-17 17:16:53,544 DEBUG quick_run hcorr_inst is ashpaq2 2010-09-17 17:16:53,544 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-09-17 17:16:53,544 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,544 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/rotate 2010-09-17 17:16:53,544 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,545 DEBUG quick_subs dbname: ../../adcpdb/a_en output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-09-17 17:16:53,545 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-09-17 17:16:53,553 DEBUG quick_run no available heading correction function specified 2010-09-17 17:16:53,553 DEBUG quick_run ------------ step 7: rotate ------------- 2010-09-17 17:16:53,553 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,553 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/rotate 2010-09-17 17:16:53,553 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,561 DEBUG quick_subs last rotated time from log file: 2010/09/17 16:45:05 2010-09-17 17:16:53,561 DEBUG quick_subs time range of currently loaded data: 2010/09/08 18:59:15 to 2010/09/17 17:14:58 2010-09-17 17:16:53,561 DEBUG quick_subs (250.791146 to 259.718727) 2010-09-17 17:16:53,561 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-09-17 17:16:53,561 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,561 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/rotate 2010-09-17 17:16:53,562 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,562 DEBUG quick_subs DB_NAME: ../../adcpdb/a_en LOG_FILE: rotate.log TIME_RANGE: 2010/09/17 15:18:30 to 2010/09/17 17:15:10 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-09-17 17:16:53,562 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-09-17 17:16:53,565 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-09-17 17:16:53,566 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-17 17:16:53,566 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,566 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:53,566 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,566 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/08 18:59:15 to 2010/09/17 17:14:58 /* the whole time range */ 2010-09-17 17:16:53,566 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-17 17:16:53,582 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-09-17 17:16:53,583 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,583 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:53,583 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,583 DEBUG quick_subs fix_file_type: simple reference_file: a_en.nav fix_file: a_en.gps output: a_en.ref year_base= 2010 ensemble_length= 120 gap_tolerance= 10 2010-09-17 17:16:53,583 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-09-17 17:16:53,595 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-09-17 17:16:53,595 DEBUG quick_setup nav/smoothr.tmp exists 2010-09-17 17:16:53,596 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,596 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:53,596 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,596 DEBUG quick_subs reference_file: a_en.nav refabs_output: a_en.ref output: a_en.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-09-17 17:16:53,596 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-09-17 17:16:53,656 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:53,656 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:53,656 DEBUG quick_setup running python command "method" 2010-09-17 17:16:53,656 DEBUG call_matlab --> clear all 2010-09-17 17:16:53,663 DEBUG call_matlab <-- >> 2010-09-17 17:16:53,664 DEBUG call_matlab --> close all 2010-09-17 17:16:53,697 DEBUG call_matlab <-- >> 2010-09-17 17:16:53,697 DEBUG call_matlab --> cd /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:53,699 DEBUG call_matlab <-- >> 2010-09-17 17:16:53,699 DEBUG call_matlab --> refsm 2010-09-17 17:16:54,026 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_en opened Searching CODAS database ==> ../adcpdb/a_en for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 903 profiles, 20 bins INFO: database closed loading getmat output >> 2010-09-17 17:16:54,026 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-09-17 17:16:54,026 DEBUG quick_setup nav/putnav.tmp exists 2010-09-17 17:16:54,026 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:54,026 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:54,027 DEBUG quick_setup running python command "method" 2010-09-17 17:16:54,027 DEBUG quick_subs dbname: ../adcpdb/a_en position_file: refsm.sm year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-09-17 17:16:54,027 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-09-17 17:16:54,045 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2010-09-17 17:16:54,045 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:54,045 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:54,046 DEBUG quick_setup running python command "method" 2010-09-17 17:16:54,046 DEBUG quick_subs Created callrtmp.m 2010-09-17 17:16:54,046 DEBUG call_matlab --> clear all 2010-09-17 17:16:54,050 DEBUG call_matlab <-- >> 2010-09-17 17:16:54,051 DEBUG call_matlab --> close all 2010-09-17 17:16:54,085 DEBUG call_matlab <-- >> 2010-09-17 17:16:54,085 DEBUG call_matlab --> cd /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:54,086 DEBUG call_matlab <-- >> 2010-09-17 17:16:54,086 DEBUG call_matlab --> callrtmp_tmp 2010-09-17 17:16:54,919 DEBUG call_matlab <-- cruise = EN483 cruise = EN483 No data available. cruise = EN483 cruise = EN483 No data available. >> 2010-09-17 17:16:54,920 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-09-17 17:16:54,920 DEBUG quick_run find profile flags ------------ *** ------------- 2010-09-17 17:16:54,920 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:54,920 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/edit 2010-09-17 17:16:54,920 DEBUG quick_setup running python command "method" 2010-09-17 17:16:55,701 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-09-17 17:16:55,701 DEBUG quick_run starting in: /home/data/EN483/proc/wh300 2010-09-17 17:16:55,701 DEBUG quick_run executing commands from: edit 2010-09-17 17:16:55,703 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_en abottom_tmp.asc 2010-09-17 17:16:55,706 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_en abadprf_tmp.asc 2010-09-17 17:16:55,709 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_en abadbin_tmp.asc 2010-09-17 17:16:55,713 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_en 20 2010-09-17 17:16:55,716 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-09-17 17:16:55,726 DEBUG quick_run changing directories back to /home/data/EN483/proc/wh300 2010-09-17 17:16:55,726 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-09-17 17:16:55,727 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-09-17 17:16:55,727 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-17 17:16:55,727 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:55,727 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:55,727 DEBUG quick_setup running python command "method" 2010-09-17 17:16:55,727 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/08 18:59:15 to 2010/09/17 17:14:58 /* the whole time range */ 2010-09-17 17:16:55,727 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-17 17:16:55,744 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-09-17 17:16:55,744 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:55,744 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:55,744 DEBUG quick_setup running python command "method" 2010-09-17 17:16:55,744 DEBUG quick_subs fix_file_type: simple reference_file: a_en.nav fix_file: a_en.gps output: a_en.ref year_base= 2010 ensemble_length= 120 gap_tolerance= 10 2010-09-17 17:16:55,744 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-09-17 17:16:55,756 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-09-17 17:16:55,757 DEBUG quick_setup nav/smoothr.tmp exists 2010-09-17 17:16:55,757 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:55,757 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:55,757 DEBUG quick_setup running python command "method" 2010-09-17 17:16:55,757 DEBUG quick_subs reference_file: a_en.nav refabs_output: a_en.ref output: a_en.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-09-17 17:16:55,757 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-09-17 17:16:55,817 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:55,817 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:55,817 DEBUG quick_setup running python command "method" 2010-09-17 17:16:55,818 DEBUG call_matlab --> clear all 2010-09-17 17:16:55,826 DEBUG call_matlab <-- >> 2010-09-17 17:16:55,826 DEBUG call_matlab --> close all 2010-09-17 17:16:55,864 DEBUG call_matlab <-- >> 2010-09-17 17:16:55,864 DEBUG call_matlab --> cd /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:55,866 DEBUG call_matlab <-- >> 2010-09-17 17:16:55,866 DEBUG call_matlab --> refsm 2010-09-17 17:16:56,180 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_en opened Searching CODAS database ==> ../adcpdb/a_en for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 903 profiles, 20 bins INFO: database closed loading getmat output >> 2010-09-17 17:16:56,180 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-09-17 17:16:56,180 DEBUG quick_setup nav/putnav.tmp exists 2010-09-17 17:16:56,180 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:56,180 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:56,180 DEBUG quick_setup running python command "method" 2010-09-17 17:16:56,180 DEBUG quick_subs dbname: ../adcpdb/a_en position_file: refsm.sm year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-09-17 17:16:56,181 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-09-17 17:16:56,199 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2010-09-17 17:16:56,199 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:56,199 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:56,199 DEBUG quick_setup running python command "method" 2010-09-17 17:16:56,200 DEBUG quick_subs Created callrtmp.m 2010-09-17 17:16:56,200 DEBUG call_matlab --> clear all 2010-09-17 17:16:56,205 DEBUG call_matlab <-- >> 2010-09-17 17:16:56,205 DEBUG call_matlab --> close all 2010-09-17 17:16:56,241 DEBUG call_matlab <-- >> 2010-09-17 17:16:56,241 DEBUG call_matlab --> cd /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:56,242 DEBUG call_matlab <-- >> 2010-09-17 17:16:56,242 DEBUG call_matlab --> callrtmp_tmp 2010-09-17 17:16:57,046 DEBUG call_matlab <-- cruise = EN483 cruise = EN483 No data available. cruise = EN483 cruise = EN483 No data available. >> 2010-09-17 17:16:57,046 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-09-17 17:16:57,046 DEBUG quick_setup edit/lst_temp.tmp exists 2010-09-17 17:16:57,047 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,047 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/edit 2010-09-17 17:16:57,047 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,047 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en.tem step_size= 1 year_base= 2010 time_ranges: all 2010-09-17 17:16:57,047 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-09-17 17:16:57,056 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,057 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/edit 2010-09-17 17:16:57,057 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,576 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-09-17 17:16:57,577 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-09-17 17:16:57,577 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,577 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/botmtrk 2010-09-17 17:16:57,577 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,577 DEBUG quick_subs dbname: ../../adcpdb/a_en output: a_en.btm step_size= 1 year_base= 2010 time_ranges: 2010/09/08 18:59:15 to 2010/09/17 17:14:58 /* whole time range */ 2010-09-17 17:16:57,577 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-09-17 17:16:57,583 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-09-17 17:16:57,583 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,583 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/botmtrk 2010-09-17 17:16:57,583 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,583 DEBUG quick_subs fix_file_type: simple reference_file: a_en.btm fix_file: ../../nav/a_en.gps output: a_en.ref year_base= 2010 ensemble_length= 120 gap_tolerance= 60 2010-09-17 17:16:57,583 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-09-17 17:16:57,586 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,587 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/botmtrk 2010-09-17 17:16:57,587 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,587 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_en.ref','a_en.btm',... 'ADCP EN483 step size 1 ', 1); 2010-09-17 17:16:57,698 DEBUG quick_setup nav/as_nav.tmp exists 2010-09-17 17:16:57,698 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,698 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/nav 2010-09-17 17:16:57,698 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,699 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/09/08 18:59:15 to 2010/09/17 17:14:58 /* the whole time range */ 2010-09-17 17:16:57,837 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-09-17 17:16:57,862 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-09-17 17:16:57,862 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,862 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/watertrk 2010-09-17 17:16:57,863 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,863 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_en.gps reference_file: ../../nav/a_en.nav output_file: a_en_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-09-17 17:16:57,863 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-09-17 17:16:57,870 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:57,870 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/cal/watertrk 2010-09-17 17:16:57,870 DEBUG quick_setup running python command "method" 2010-09-17 17:16:57,870 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_en_7.cal', 'ADCP EN483 7ens') 2010-09-17 17:16:57,871 DEBUG call_matlab --> clear all 2010-09-17 17:16:57,874 DEBUG call_matlab <-- >> 2010-09-17 17:16:57,874 DEBUG call_matlab --> close all 2010-09-17 17:16:57,910 DEBUG call_matlab <-- >> 2010-09-17 17:16:57,910 DEBUG call_matlab --> cd /home/data/EN483/proc/wh300/cal/watertrk 2010-09-17 17:16:57,911 DEBUG call_matlab <-- >> 2010-09-17 17:16:57,912 DEBUG call_matlab --> calladcpcal_tmp 2010-09-17 17:16:58,596 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [5x11 double] igood: [4x1 double] >> 2010-09-17 17:16:58,596 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-09-17 17:16:58,596 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:58,596 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/vector 2010-09-17 17:16:58,596 DEBUG quick_setup running python command "method" 2010-09-17 17:16:58,596 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_en.tmp 2010-09-17 17:16:58,600 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:58,600 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/vector 2010-09-17 17:16:58,600 DEBUG quick_setup running python command "method" 2010-09-17 17:16:58,600 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-09-17 17:16:58,617 DEBUG quick_asect done making vector matfiles 2010-09-17 17:16:58,617 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:58,617 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/contour 2010-09-17 17:16:58,617 DEBUG quick_setup running python command "method" 2010-09-17 17:16:58,618 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_en.tmp 2010-09-17 17:16:58,622 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:58,623 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/contour 2010-09-17 17:16:58,623 DEBUG quick_setup running python command "method" 2010-09-17 17:16:58,623 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-09-17 17:16:58,657 DEBUG quick_setup starting in /home/data/EN483/proc/wh300 2010-09-17 17:16:58,657 DEBUG quick_setup executing commands from /home/data/EN483/proc/wh300/contour 2010-09-17 17:16:58,657 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_en 2010-09-17 17:16:58,702 DEBUG quick_asect done running getmat with "allbins" 2010-09-17 17:16:58,703 INFO root copying NOFIG to /home/adcp/www/figures/wh300_hcorr_plot.png 2010-09-17 17:16:58,703 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/wh300_hcorr_plot_thumb.png 2010-09-17 17:16:58,703 DEBUG root matfile is contour/contour_uv.mat 2010-09-17 17:16:58,707 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/wh300_cont_uv.mat 2010-09-17 17:16:58,707 DEBUG root matfile is vector/vector_uv.mat 2010-09-17 17:16:58,707 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/wh300_vect_uv.mat 2010-09-17 17:16:58,707 DEBUG root matfile is contour/contour_xy.mat 2010-09-17 17:16:58,707 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/wh300_cont_xy.mat 2010-09-17 17:16:58,707 DEBUG root matfile is vector/vector_xy.mat 2010-09-17 17:16:58,708 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/wh300_vect_xy.mat 2010-09-17 17:16:58,708 DEBUG root about to copy file edit/a_en.tem to /home/adcp/www/data/wh300_temp.asc 2010-09-17 17:16:58,708 INFO root copying edit/a_en.tem to /home/adcp/www/data/wh300_temp.asc 2010-09-17 17:16:58,708 INFO root Ending quick_adcp.py 2010-09-17 17:16:58,765 DEBUG quick_setup killed matlab engine