2010-07-23 17:27:10,395 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase EN480 --cruisename EN480 --instclass os --instname os75 --dbname a_en --datatype uhdas --datadir /home/data/EN480/raw/os75 --cfgpath /home/data/EN480/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashpaq2 --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto 2010-07-23 17:27:10,397 DEBUG quick_adcp progdir = /home/currents/programs 2010-07-23 17:27:10,397 DEBUG quick_adcp binos = lnx 2010-07-23 17:27:10,397 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-07-23 17:27:10,397 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-07-23 17:27:10,397 DEBUG quick_setup processing data logged with uhdas: 2010-07-23 17:27:10,397 DEBUG quick_setup datatype is uhdas 2010-07-23 17:27:10,397 DEBUG quick_setup pingtype is nb 2010-07-23 17:27:10,397 DEBUG quick_setup instclass is os 2010-07-23 17:27:10,397 DEBUG quick_setup no post-processing heading correction will be used 2010-07-23 17:27:10,398 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-07-23 17:27:10,407 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'EN480',... 'cfgpath' , '/home/data/EN480/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-07-23 17:27:10,407 DEBUG quick_setup ------- starting Matlab engine ------- 2010-07-23 17:27:10,407 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-07-23 17:27:10,408 DEBUG call_matlab starting to wait for initial prompt 2010-07-23 17:27:10,916 DEBUG call_matlab received initial prompt 2010-07-23 17:27:11,037 DEBUG quick_adcp cwd is /home/data/EN480/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-07-23 17:27:11,038 DEBUG quick_adcp original fix file is a_en.gps 2010-07-23 17:27:11,038 DEBUG quick_adcp smoothed nav file is refsm.sm 2010-07-23 17:27:11,038 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-07-23 17:27:11,108 DEBUG quick_subs found 118 files using wildcard expansion from "/home/data/EN480/raw/os75/*.raw" 2010-07-23 17:27:11,108 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/EN480/raw/os75/en2010_193_70010.raw /home/data/EN480/raw/os75/en2010_193_72000.raw /home/data/EN480/raw/os75/en2010_193_79200.raw /home/data/EN480/raw/os75/en2010_194_00000.raw /home/data/EN480/raw/os75/en2010_194_07200.raw /home/data/EN480/raw/os75/en2010_194_14400.raw /home/data/EN480/raw/os75/en2010_194_21600.raw /home/data/EN480/raw/os75/en2010_194_28800.raw /home/data/EN480/raw/os75/en2010_194_36000.raw /home/data/EN480/raw/os75/en2010_194_43200.raw /home/data/EN480/raw/os75/en2010_194_50400.raw /home/data/EN480/raw/os75/en2010_194_57600.raw /home/data/EN480/raw/os75/en2010_194_64800.raw /home/data/EN480/raw/os75/en2010_194_72000.raw /home/data/EN480/raw/os75/en2010_194_79200.raw /home/data/EN480/raw/os75/en2010_195_00000.raw /home/data/EN480/raw/os75/en2010_195_07200.raw /home/data/EN480/raw/os75/en2010_195_14400.raw /home/data/EN480/raw/os75/en2010_195_21600.raw /home/data/EN480/raw/os75/en2010_195_28800.raw /home/data/EN480/raw/os75/en2010_195_36000.raw /home/data/EN480/raw/os75/en2010_195_43200.raw /home/data/EN480/raw/os75/en2010_195_50400.raw /home/data/EN480/raw/os75/en2010_195_57600.raw /home/data/EN480/raw/os75/en2010_195_64800.raw /home/data/EN480/raw/os75/en2010_195_72000.raw /home/data/EN480/raw/os75/en2010_195_79200.raw /home/data/EN480/raw/os75/en2010_196_00000.raw /home/data/EN480/raw/os75/en2010_196_07200.raw /home/data/EN480/raw/os75/en2010_196_14400.raw /home/data/EN480/raw/os75/en2010_196_21600.raw /home/data/EN480/raw/os75/en2010_196_28800.raw /home/data/EN480/raw/os75/en2010_196_36000.raw /home/data/EN480/raw/os75/en2010_196_43200.raw /home/data/EN480/raw/os75/en2010_196_50400.raw /home/data/EN480/raw/os75/en2010_196_57600.raw /home/data/EN480/raw/os75/en2010_196_64800.raw /home/data/EN480/raw/os75/en2010_196_72000.raw /home/data/EN480/raw/os75/en2010_196_79200.raw /home/data/EN480/raw/os75/en2010_197_00000.raw /home/data/EN480/raw/os75/en2010_197_07200.raw /home/data/EN480/raw/os75/en2010_197_14400.raw /home/data/EN480/raw/os75/en2010_197_21600.raw /home/data/EN480/raw/os75/en2010_197_28800.raw /home/data/EN480/raw/os75/en2010_197_36000.raw /home/data/EN480/raw/os75/en2010_197_43200.raw /home/data/EN480/raw/os75/en2010_197_50400.raw /home/data/EN480/raw/os75/en2010_197_57600.raw /home/data/EN480/raw/os75/en2010_197_64800.raw /home/data/EN480/raw/os75/en2010_197_72000.raw /home/data/EN480/raw/os75/en2010_197_79200.raw /home/data/EN480/raw/os75/en2010_198_00000.raw /home/data/EN480/raw/os75/en2010_198_07200.raw /home/data/EN480/raw/os75/en2010_198_14400.raw /home/data/EN480/raw/os75/en2010_198_21600.raw /home/data/EN480/raw/os75/en2010_198_28800.raw /home/data/EN480/raw/os75/en2010_198_36000.raw /home/data/EN480/raw/os75/en2010_198_43200.raw /home/data/EN480/raw/os75/en2010_198_50400.raw /home/data/EN480/raw/os75/en2010_198_57600.raw /home/data/EN480/raw/os75/en2010_198_64800.raw /home/data/EN480/raw/os75/en2010_198_72000.raw /home/data/EN480/raw/os75/en2010_198_79200.raw /home/data/EN480/raw/os75/en2010_199_00000.raw /home/data/EN480/raw/os75/en2010_199_07200.raw /home/data/EN480/raw/os75/en2010_199_14400.raw /home/data/EN480/raw/os75/en2010_199_21600.raw /home/data/EN480/raw/os75/en2010_199_28800.raw /home/data/EN480/raw/os75/en2010_199_36000.raw /home/data/EN480/raw/os75/en2010_199_43200.raw /home/data/EN480/raw/os75/en2010_199_50400.raw /home/data/EN480/raw/os75/en2010_199_57600.raw /home/data/EN480/raw/os75/en2010_199_64800.raw /home/data/EN480/raw/os75/en2010_199_72000.raw /home/data/EN480/raw/os75/en2010_199_79200.raw /home/data/EN480/raw/os75/en2010_200_00000.raw /home/data/EN480/raw/os75/en2010_200_07200.raw /home/data/EN480/raw/os75/en2010_200_14400.raw /home/data/EN480/raw/os75/en2010_200_21600.raw /home/data/EN480/raw/os75/en2010_200_28800.raw /home/data/EN480/raw/os75/en2010_200_36000.raw /home/data/EN480/raw/os75/en2010_200_43200.raw /home/data/EN480/raw/os75/en2010_200_50400.raw /home/data/EN480/raw/os75/en2010_200_57600.raw /home/data/EN480/raw/os75/en2010_200_64800.raw /home/data/EN480/raw/os75/en2010_200_72000.raw /home/data/EN480/raw/os75/en2010_200_79200.raw /home/data/EN480/raw/os75/en2010_201_00000.raw /home/data/EN480/raw/os75/en2010_201_07200.raw /home/data/EN480/raw/os75/en2010_201_14400.raw /home/data/EN480/raw/os75/en2010_201_21600.raw /home/data/EN480/raw/os75/en2010_201_28800.raw /home/data/EN480/raw/os75/en2010_201_36000.raw /home/data/EN480/raw/os75/en2010_201_43200.raw /home/data/EN480/raw/os75/en2010_201_50400.raw /home/data/EN480/raw/os75/en2010_201_57600.raw /home/data/EN480/raw/os75/en2010_201_64800.raw /home/data/EN480/raw/os75/en2010_201_72000.raw /home/data/EN480/raw/os75/en2010_201_79200.raw /home/data/EN480/raw/os75/en2010_202_00000.raw /home/data/EN480/raw/os75/en2010_202_07200.raw /home/data/EN480/raw/os75/en2010_202_14400.raw /home/data/EN480/raw/os75/en2010_202_21600.raw /home/data/EN480/raw/os75/en2010_202_28800.raw /home/data/EN480/raw/os75/en2010_202_36000.raw /home/data/EN480/raw/os75/en2010_202_43200.raw /home/data/EN480/raw/os75/en2010_202_50400.raw /home/data/EN480/raw/os75/en2010_202_57600.raw /home/data/EN480/raw/os75/en2010_202_64800.raw /home/data/EN480/raw/os75/en2010_202_72000.raw /home/data/EN480/raw/os75/en2010_202_79200.raw /home/data/EN480/raw/os75/en2010_203_00000.raw /home/data/EN480/raw/os75/en2010_203_07200.raw /home/data/EN480/raw/os75/en2010_203_14400.raw /home/data/EN480/raw/os75/en2010_203_21600.raw /home/data/EN480/raw/os75/en2010_203_28800.raw /home/data/EN480/raw/os75/en2010_203_36000.raw /home/data/EN480/raw/os75/en2010_203_43200.raw 2010-07-23 17:27:11,109 DEBUG quick_adcp LASTFILES invoked. using only 118 files from end of filelist 2010-07-23 17:27:11,109 DEBUG quick_adcp using delblks = 1 2010-07-23 17:27:11,109 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/EN480/raw/os75/en2010_193_70010.raw /home/data/EN480/raw/os75/en2010_193_72000.raw /home/data/EN480/raw/os75/en2010_193_79200.raw /home/data/EN480/raw/os75/en2010_194_00000.raw /home/data/EN480/raw/os75/en2010_194_07200.raw /home/data/EN480/raw/os75/en2010_194_14400.raw /home/data/EN480/raw/os75/en2010_194_21600.raw /home/data/EN480/raw/os75/en2010_194_28800.raw /home/data/EN480/raw/os75/en2010_194_36000.raw /home/data/EN480/raw/os75/en2010_194_43200.raw /home/data/EN480/raw/os75/en2010_194_50400.raw /home/data/EN480/raw/os75/en2010_194_57600.raw /home/data/EN480/raw/os75/en2010_194_64800.raw /home/data/EN480/raw/os75/en2010_194_72000.raw /home/data/EN480/raw/os75/en2010_194_79200.raw /home/data/EN480/raw/os75/en2010_195_00000.raw /home/data/EN480/raw/os75/en2010_195_07200.raw /home/data/EN480/raw/os75/en2010_195_14400.raw /home/data/EN480/raw/os75/en2010_195_21600.raw /home/data/EN480/raw/os75/en2010_195_28800.raw /home/data/EN480/raw/os75/en2010_195_36000.raw /home/data/EN480/raw/os75/en2010_195_43200.raw /home/data/EN480/raw/os75/en2010_195_50400.raw /home/data/EN480/raw/os75/en2010_195_57600.raw /home/data/EN480/raw/os75/en2010_195_64800.raw /home/data/EN480/raw/os75/en2010_195_72000.raw /home/data/EN480/raw/os75/en2010_195_79200.raw /home/data/EN480/raw/os75/en2010_196_00000.raw /home/data/EN480/raw/os75/en2010_196_07200.raw /home/data/EN480/raw/os75/en2010_196_14400.raw /home/data/EN480/raw/os75/en2010_196_21600.raw /home/data/EN480/raw/os75/en2010_196_28800.raw /home/data/EN480/raw/os75/en2010_196_36000.raw /home/data/EN480/raw/os75/en2010_196_43200.raw /home/data/EN480/raw/os75/en2010_196_50400.raw /home/data/EN480/raw/os75/en2010_196_57600.raw /home/data/EN480/raw/os75/en2010_196_64800.raw /home/data/EN480/raw/os75/en2010_196_72000.raw /home/data/EN480/raw/os75/en2010_196_79200.raw /home/data/EN480/raw/os75/en2010_197_00000.raw /home/data/EN480/raw/os75/en2010_197_07200.raw /home/data/EN480/raw/os75/en2010_197_14400.raw /home/data/EN480/raw/os75/en2010_197_21600.raw /home/data/EN480/raw/os75/en2010_197_28800.raw /home/data/EN480/raw/os75/en2010_197_36000.raw /home/data/EN480/raw/os75/en2010_197_43200.raw /home/data/EN480/raw/os75/en2010_197_50400.raw /home/data/EN480/raw/os75/en2010_197_57600.raw /home/data/EN480/raw/os75/en2010_197_64800.raw /home/data/EN480/raw/os75/en2010_197_72000.raw /home/data/EN480/raw/os75/en2010_197_79200.raw /home/data/EN480/raw/os75/en2010_198_00000.raw /home/data/EN480/raw/os75/en2010_198_07200.raw /home/data/EN480/raw/os75/en2010_198_14400.raw /home/data/EN480/raw/os75/en2010_198_21600.raw /home/data/EN480/raw/os75/en2010_198_28800.raw /home/data/EN480/raw/os75/en2010_198_36000.raw /home/data/EN480/raw/os75/en2010_198_43200.raw /home/data/EN480/raw/os75/en2010_198_50400.raw /home/data/EN480/raw/os75/en2010_198_57600.raw /home/data/EN480/raw/os75/en2010_198_64800.raw /home/data/EN480/raw/os75/en2010_198_72000.raw /home/data/EN480/raw/os75/en2010_198_79200.raw /home/data/EN480/raw/os75/en2010_199_00000.raw /home/data/EN480/raw/os75/en2010_199_07200.raw /home/data/EN480/raw/os75/en2010_199_14400.raw /home/data/EN480/raw/os75/en2010_199_21600.raw /home/data/EN480/raw/os75/en2010_199_28800.raw /home/data/EN480/raw/os75/en2010_199_36000.raw /home/data/EN480/raw/os75/en2010_199_43200.raw /home/data/EN480/raw/os75/en2010_199_50400.raw /home/data/EN480/raw/os75/en2010_199_57600.raw /home/data/EN480/raw/os75/en2010_199_64800.raw /home/data/EN480/raw/os75/en2010_199_72000.raw /home/data/EN480/raw/os75/en2010_199_79200.raw /home/data/EN480/raw/os75/en2010_200_00000.raw /home/data/EN480/raw/os75/en2010_200_07200.raw /home/data/EN480/raw/os75/en2010_200_14400.raw /home/data/EN480/raw/os75/en2010_200_21600.raw /home/data/EN480/raw/os75/en2010_200_28800.raw /home/data/EN480/raw/os75/en2010_200_36000.raw /home/data/EN480/raw/os75/en2010_200_43200.raw /home/data/EN480/raw/os75/en2010_200_50400.raw /home/data/EN480/raw/os75/en2010_200_57600.raw /home/data/EN480/raw/os75/en2010_200_64800.raw /home/data/EN480/raw/os75/en2010_200_72000.raw /home/data/EN480/raw/os75/en2010_200_79200.raw /home/data/EN480/raw/os75/en2010_201_00000.raw /home/data/EN480/raw/os75/en2010_201_07200.raw /home/data/EN480/raw/os75/en2010_201_14400.raw /home/data/EN480/raw/os75/en2010_201_21600.raw /home/data/EN480/raw/os75/en2010_201_28800.raw /home/data/EN480/raw/os75/en2010_201_36000.raw /home/data/EN480/raw/os75/en2010_201_43200.raw /home/data/EN480/raw/os75/en2010_201_50400.raw /home/data/EN480/raw/os75/en2010_201_57600.raw /home/data/EN480/raw/os75/en2010_201_64800.raw /home/data/EN480/raw/os75/en2010_201_72000.raw /home/data/EN480/raw/os75/en2010_201_79200.raw /home/data/EN480/raw/os75/en2010_202_00000.raw /home/data/EN480/raw/os75/en2010_202_07200.raw /home/data/EN480/raw/os75/en2010_202_14400.raw /home/data/EN480/raw/os75/en2010_202_21600.raw /home/data/EN480/raw/os75/en2010_202_28800.raw /home/data/EN480/raw/os75/en2010_202_36000.raw /home/data/EN480/raw/os75/en2010_202_43200.raw /home/data/EN480/raw/os75/en2010_202_50400.raw /home/data/EN480/raw/os75/en2010_202_57600.raw /home/data/EN480/raw/os75/en2010_202_64800.raw /home/data/EN480/raw/os75/en2010_202_72000.raw /home/data/EN480/raw/os75/en2010_202_79200.raw /home/data/EN480/raw/os75/en2010_203_00000.raw /home/data/EN480/raw/os75/en2010_203_07200.raw /home/data/EN480/raw/os75/en2010_203_14400.raw /home/data/EN480/raw/os75/en2010_203_21600.raw /home/data/EN480/raw/os75/en2010_203_28800.raw /home/data/EN480/raw/os75/en2010_203_36000.raw /home/data/EN480/raw/os75/en2010_203_43200.raw 2010-07-23 17:27:11,110 DEBUG quick_adcp Fri Jul 23 17:27:11 2010 running quick_adcp.py as follows: --cntfile /home/data/EN480/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_en cbasename contour dbname a_en dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 29 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_en allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase EN480 cfgpath /home/data/EN480/proc/os75nb/config cntfile /home/data/EN480/proc/os75nb/os75nb_qpy.cnt commands None cruisename EN480 data_def vmadcp.def datadir /home/data/EN480/raw/os75 datafile_glob *.raw datatype uhdas dbname a_en dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/EN480/raw/os75/en2010_193_70010.raw', '/home/data/EN480/raw/os75/en2010_193_72000.raw', '/home/data/EN480/raw/os75/en2010_193_79200.raw', '/home/data/EN480/raw/os75/en2010_194_00000.raw', '/home/data/EN480/raw/os75/en2010_194_07200.raw', '/home/data/EN480/raw/os75/en2010_194_14400.raw', '/home/data/EN480/raw/os75/en2010_194_21600.raw', '/home/data/EN480/raw/os75/en2010_194_28800.raw', '/home/data/EN480/raw/os75/en2010_194_36000.raw', '/home/data/EN480/raw/os75/en2010_194_43200.raw', '/home/data/EN480/raw/os75/en2010_194_50400.raw', '/home/data/EN480/raw/os75/en2010_194_57600.raw', '/home/data/EN480/raw/os75/en2010_194_64800.raw', '/home/data/EN480/raw/os75/en2010_194_72000.raw', '/home/data/EN480/raw/os75/en2010_194_79200.raw', '/home/data/EN480/raw/os75/en2010_195_00000.raw', '/home/data/EN480/raw/os75/en2010_195_07200.raw', '/home/data/EN480/raw/os75/en2010_195_14400.raw', 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filter_hwidth 0.0208 find_pflags True firstdepth 29 fixfile a_en.gps hcorr_inst ashpaq2 head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'EN480',... 'cfgpath' , '/home/data/EN480/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_en.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2010 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/EN480/raw/os75/en2010_193_70010.raw', '/home/data/EN480/raw/os75/en2010_193_72000.raw', '/home/data/EN480/raw/os75/en2010_193_79200.raw', '/home/data/EN480/raw/os75/en2010_194_00000.raw', '/home/data/EN480/raw/os75/en2010_194_07200.raw', '/home/data/EN480/raw/os75/en2010_194_14400.raw', '/home/data/EN480/raw/os75/en2010_194_21600.raw', '/home/data/EN480/raw/os75/en2010_194_28800.raw', 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'/home/data/EN480/raw/os75/en2010_201_07200.raw', '/home/data/EN480/raw/os75/en2010_201_14400.raw', '/home/data/EN480/raw/os75/en2010_201_21600.raw', '/home/data/EN480/raw/os75/en2010_201_28800.raw', '/home/data/EN480/raw/os75/en2010_201_36000.raw', '/home/data/EN480/raw/os75/en2010_201_43200.raw', '/home/data/EN480/raw/os75/en2010_201_50400.raw', '/home/data/EN480/raw/os75/en2010_201_57600.raw', '/home/data/EN480/raw/os75/en2010_201_64800.raw', '/home/data/EN480/raw/os75/en2010_201_72000.raw', '/home/data/EN480/raw/os75/en2010_201_79200.raw', '/home/data/EN480/raw/os75/en2010_202_00000.raw', '/home/data/EN480/raw/os75/en2010_202_07200.raw', '/home/data/EN480/raw/os75/en2010_202_14400.raw', '/home/data/EN480/raw/os75/en2010_202_21600.raw', '/home/data/EN480/raw/os75/en2010_202_28800.raw', '/home/data/EN480/raw/os75/en2010_202_36000.raw', '/home/data/EN480/raw/os75/en2010_202_43200.raw', '/home/data/EN480/raw/os75/en2010_202_50400.raw', '/home/data/EN480/raw/os75/en2010_202_57600.raw', '/home/data/EN480/raw/os75/en2010_202_64800.raw', '/home/data/EN480/raw/os75/en2010_202_72000.raw', '/home/data/EN480/raw/os75/en2010_202_79200.raw', '/home/data/EN480/raw/os75/en2010_203_00000.raw', '/home/data/EN480/raw/os75/en2010_203_07200.raw', '/home/data/EN480/raw/os75/en2010_203_14400.raw', '/home/data/EN480/raw/os75/en2010_203_21600.raw', '/home/data/EN480/raw/os75/en2010_203_28800.raw', '/home/data/EN480/raw/os75/en2010_203_36000.raw', '/home/data/EN480/raw/os75/en2010_203_43200.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-07-23 17:27:11,110 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-07-23 17:27:11,110 DEBUG quick_run scanning files for time ranges... 2010-07-23 17:27:11,110 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb/scan 2010-07-23 17:27:11,111 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/scan 2010-07-23 17:27:11,111 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,111 DEBUG call_matlab --> clear all 2010-07-23 17:27:11,114 DEBUG call_matlab <-- >> 2010-07-23 17:27:11,114 DEBUG call_matlab --> close all 2010-07-23 17:27:11,148 DEBUG call_matlab <-- >> 2010-07-23 17:27:11,148 DEBUG call_matlab --> cd /home/data/EN480/proc/os75nb/scan 2010-07-23 17:27:11,149 DEBUG call_matlab <-- >> 2010-07-23 17:27:11,149 DEBUG call_matlab --> scan_tmp 2010-07-23 17:27:11,606 DEBUG call_matlab <-- getting config files from "/home/data/EN480/proc/os75nb/config" running "EN480_cfg.m" running "EN480_proc.m" writing scan info to a_en.scn >> 2010-07-23 17:27:11,607 DEBUG quick_run writing time range from a_en.scn to a_en.tr 2010-07-23 17:27:11,607 DEBUG quick_run getting scan time range 2010-07-23 17:27:11,607 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,607 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/scan 2010-07-23 17:27:11,607 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,607 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,608 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,608 DEBUG quick_subs start_end_time 2010/07/13 19:26:55 to 2010/07/23 12:43:58 2010-07-23 17:27:11,608 DEBUG quick_subs dd0: 193.810359 dd1: 203.530532 2010-07-23 17:27:11,609 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,609 DEBUG quick_adcp looking for database with adcpdb/a_en*.blk 2010-07-23 17:27:11,609 DEBUG quick_adcp database found: listing blocks 2010-07-23 17:27:11,609 DEBUG quick_subs removing a_endir.blk 2010-07-23 17:27:11,610 DEBUG quick_subs about to run mkblkdir 2010-07-23 17:27:11,610 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-07-23 17:27:11,610 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-07-23 17:27:11,616 DEBUG quick_subs database passes. 2010-07-23 17:27:11,616 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-07-23 17:27:11,616 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,616 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,617 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,617 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,617 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,617 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,617 DEBUG quick_subs dd0: 193.813877 dd1: 203.529329 2010-07-23 17:27:11,617 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-07-23 17:27:11,618 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,618 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,618 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,618 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,618 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,618 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,618 DEBUG quick_subs dd0: 193.813877 dd1: 203.529329 2010-07-23 17:27:11,618 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-07-23 17:27:11,619 DEBUG quick_adcp origdb_time_range is 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,619 DEBUG quick_adcp (193.813877 to 203.529329) 2010-07-23 17:27:11,619 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-07-23 17:27:11,619 DEBUG quick_subs getting current (remaining after deletion) database times 2010-07-23 17:27:11,619 DEBUG quick_subs ['adcpdb/a_en007.blk', 'adcpdb/a_en008.blk', 'adcpdb/a_en002.blk', 'adcpdb/a_endir.blk', 'adcpdb/a_en018.blk', 'adcpdb/a_en005.blk', 'adcpdb/a_en017.blk', 'adcpdb/a_en006.blk', 'adcpdb/a_en003.blk', 'adcpdb/a_en009.blk', 'adcpdb/a_en001.blk', 'adcpdb/a_en016.blk', 'adcpdb/a_en019.blk', 'adcpdb/a_en011.blk', 'adcpdb/a_en014.blk', 'adcpdb/a_en004.blk', 'adcpdb/a_en013.blk', 'adcpdb/a_en010.blk', 'adcpdb/a_en012.blk', 'adcpdb/a_en015.blk'] 2010-07-23 17:27:11,619 DEBUG quick_subs length is 20 2010-07-23 17:27:11,619 DEBUG quick_subs removing a_endir.blk 2010-07-23 17:27:11,620 DEBUG quick_subs about to run mkblkdir 2010-07-23 17:27:11,620 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-07-23 17:27:11,620 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-07-23 17:27:11,626 DEBUG quick_subs database passes. 2010-07-23 17:27:11,626 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-07-23 17:27:11,626 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,626 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,626 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,626 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,627 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,627 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,627 DEBUG quick_subs dd0: 193.813877 dd1: 203.529329 2010-07-23 17:27:11,627 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,627 DEBUG quick_subs reading time range 2010-07-23 17:27:11,627 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,627 DEBUG quick_subs dd0: 193.813877 dd1: 203.529329 2010-07-23 17:27:11,628 INFO quick_subs Fri Jul 23 17:27:11 2010 2010-07-23 17:27:11,628 INFO quick_subs checking database time range by listblk 2010-07-23 17:27:11,628 DEBUG quick_subs removing a_endir.blk 2010-07-23 17:27:11,628 DEBUG quick_subs about to run mkblkdir 2010-07-23 17:27:11,628 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-07-23 17:27:11,628 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-07-23 17:27:11,634 DEBUG quick_subs database passes. 2010-07-23 17:27:11,635 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-07-23 17:27:11,635 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,635 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,635 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,635 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,635 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,635 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,636 DEBUG quick_subs dd0: 193.813877 dd1: 203.529329 2010-07-23 17:27:11,637 INFO quick_subs found line /* 0 n= 146 a_en001.blk */ 2010/07/13 19:31:59 to 2010/07/14 07:45:13 2010-07-23 17:27:11,637 INFO quick_subs found line /* 1 n= 146 a_en002.blk */ 2010/07/14 07:50:17 to 2010/07/14 20:08:23 2010-07-23 17:27:11,637 INFO quick_subs found line /* 2 n= 146 a_en003.blk */ 2010/07/14 20:13:27 to 2010/07/15 08:27:15 2010-07-23 17:27:11,637 INFO quick_subs found line /* 3 n= 146 a_en004.blk */ 2010/07/15 08:32:15 to 2010/07/15 20:39:36 2010-07-23 17:27:11,637 INFO quick_subs found line /* 4 n= 146 a_en005.blk */ 2010/07/15 20:44:36 to 2010/07/16 08:58:03 2010-07-23 17:27:11,637 INFO quick_subs found line /* 5 n= 146 a_en006.blk */ 2010/07/16 09:03:07 to 2010/07/16 21:16:06 2010-07-23 17:27:11,637 INFO quick_subs found line /* 6 n= 146 a_en007.blk */ 2010/07/16 21:21:09 to 2010/07/17 09:35:09 2010-07-23 17:27:11,637 INFO quick_subs found line /* 7 n= 146 a_en008.blk */ 2010/07/17 09:40:09 to 2010/07/17 21:48:35 2010-07-23 17:27:11,637 INFO quick_subs found line /* 8 n= 146 a_en009.blk */ 2010/07/17 21:53:39 to 2010/07/18 10:05:03 2010-07-23 17:27:11,638 INFO quick_subs found line /* 9 n= 146 a_en010.blk */ 2010/07/18 10:10:03 to 2010/07/18 22:15:50 2010-07-23 17:27:11,638 INFO quick_subs found line /* 10 n= 146 a_en011.blk */ 2010/07/18 22:20:50 to 2010/07/19 10:31:31 2010-07-23 17:27:11,638 INFO quick_subs found line /* 11 n= 146 a_en012.blk */ 2010/07/19 10:36:35 to 2010/07/19 22:48:05 2010-07-23 17:27:11,638 INFO quick_subs found line /* 12 n= 146 a_en013.blk */ 2010/07/19 22:53:05 to 2010/07/20 11:04:32 2010-07-23 17:27:11,638 INFO quick_subs found line /* 13 n= 146 a_en014.blk */ 2010/07/20 11:09:36 to 2010/07/20 23:21:48 2010-07-23 17:27:11,638 INFO quick_subs found line /* 14 n= 146 a_en015.blk */ 2010/07/20 23:26:48 to 2010/07/21 11:39:22 2010-07-23 17:27:11,638 INFO quick_subs found line /* 15 n= 146 a_en016.blk */ 2010/07/21 11:44:25 to 2010/07/21 23:57:11 2010-07-23 17:27:11,638 INFO quick_subs found line /* 16 n= 146 a_en017.blk */ 2010/07/22 00:02:14 to 2010/07/22 12:16:16 2010-07-23 17:27:11,638 INFO quick_subs found line /* 17 n= 146 a_en018.blk */ 2010/07/22 12:21:19 to 2010/07/23 00:35:29 2010-07-23 17:27:11,639 INFO quick_subs found line /* 18 n= 144 a_en019.blk */ 2010/07/23 00:40:33 to 2010/07/23 12:42:14 2010-07-23 17:27:11,639 INFO quick_subs scan data start at 193.8103588 2010-07-23 17:27:11,639 INFO quick_subs scan time range: 2010/07/13 19:26:55 to 2010/07/23 12:43:58 2010-07-23 17:27:11,639 INFO quick_subs codasdb ends at 203.5293287 (2010/07/23 12:42:14) 2010-07-23 17:27:11,639 DEBUG quick_subs ... changed dirs, in /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,639 DEBUG quick_subs deleting these files: ['a_en019.blk'] 2010-07-23 17:27:11,640 DEBUG quick_subs getting current (remaining after deletion) database times 2010-07-23 17:27:11,640 DEBUG quick_subs ['adcpdb/a_en007.blk', 'adcpdb/a_en008.blk', 'adcpdb/a_en002.blk', 'adcpdb/a_en018.blk', 'adcpdb/a_en005.blk', 'adcpdb/a_en017.blk', 'adcpdb/a_en006.blk', 'adcpdb/a_en003.blk', 'adcpdb/a_en009.blk', 'adcpdb/a_en001.blk', 'adcpdb/a_en016.blk', 'adcpdb/a_en011.blk', 'adcpdb/a_en014.blk', 'adcpdb/a_en004.blk', 'adcpdb/a_en013.blk', 'adcpdb/a_en010.blk', 'adcpdb/a_en012.blk', 'adcpdb/a_en015.blk'] 2010-07-23 17:27:11,640 DEBUG quick_subs length is 18 2010-07-23 17:27:11,640 DEBUG quick_subs about to run mkblkdir 2010-07-23 17:27:11,640 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-07-23 17:27:11,640 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-07-23 17:27:11,646 DEBUG quick_subs database passes. 2010-07-23 17:27:11,646 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-07-23 17:27:11,646 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,647 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,647 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,647 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,647 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,647 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 00:35:29 2010-07-23 17:27:11,647 DEBUG quick_subs dd0: 193.813877 dd1: 203.024641 2010-07-23 17:27:11,647 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,648 DEBUG quick_subs reading time range 2010-07-23 17:27:11,648 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 00:35:29 2010-07-23 17:27:11,648 DEBUG quick_subs dd0: 193.813877 dd1: 203.024641 2010-07-23 17:27:11,648 DEBUG quick_subs codas database currently goes from 2010/07/13 19:31:59 to 2010/07/23 00:35:29 2010-07-23 17:27:11,648 DEBUG quick_subs (193.813877 to 203.024641) 2010-07-23 17:27:11,648 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016found existing adcpdb blocks: %s 017found existing adcpdb blocks: %s 018 2010-07-23 17:27:11,649 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 018 019 2010-07-23 17:27:11,649 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018'] 2010-07-23 17:27:11,649 DEBUG quick_subs checked: unloaded blkstrs: ['019'] 2010-07-23 17:27:11,649 DEBUG quick_subs first unloaded file is load/ens_blk019.cmd 2010-07-23 17:27:11,650 DEBUG quick_subs data goes from 2010/07/23 00:40:33 to 2010/07/23 12:43:58 2010-07-23 17:27:11,650 DEBUG quick_subs (203.028160 to 203.530532) 2010-07-23 17:27:11,650 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/EN480/raw/os75/en2010_193_70010.raw /home/data/EN480/raw/os75/en2010_193_72000.raw /home/data/EN480/raw/os75/en2010_193_79200.raw /home/data/EN480/raw/os75/en2010_194_00000.raw /home/data/EN480/raw/os75/en2010_194_07200.raw /home/data/EN480/raw/os75/en2010_194_14400.raw /home/data/EN480/raw/os75/en2010_194_21600.raw /home/data/EN480/raw/os75/en2010_194_28800.raw /home/data/EN480/raw/os75/en2010_194_36000.raw /home/data/EN480/raw/os75/en2010_194_43200.raw /home/data/EN480/raw/os75/en2010_194_50400.raw /home/data/EN480/raw/os75/en2010_194_57600.raw /home/data/EN480/raw/os75/en2010_194_64800.raw /home/data/EN480/raw/os75/en2010_194_72000.raw /home/data/EN480/raw/os75/en2010_194_79200.raw /home/data/EN480/raw/os75/en2010_195_00000.raw /home/data/EN480/raw/os75/en2010_195_07200.raw /home/data/EN480/raw/os75/en2010_195_14400.raw /home/data/EN480/raw/os75/en2010_195_21600.raw /home/data/EN480/raw/os75/en2010_195_28800.raw /home/data/EN480/raw/os75/en2010_195_36000.raw /home/data/EN480/raw/os75/en2010_195_43200.raw /home/data/EN480/raw/os75/en2010_195_50400.raw /home/data/EN480/raw/os75/en2010_195_57600.raw /home/data/EN480/raw/os75/en2010_195_64800.raw /home/data/EN480/raw/os75/en2010_195_72000.raw /home/data/EN480/raw/os75/en2010_195_79200.raw /home/data/EN480/raw/os75/en2010_196_00000.raw /home/data/EN480/raw/os75/en2010_196_07200.raw /home/data/EN480/raw/os75/en2010_196_14400.raw /home/data/EN480/raw/os75/en2010_196_21600.raw /home/data/EN480/raw/os75/en2010_196_28800.raw /home/data/EN480/raw/os75/en2010_196_36000.raw /home/data/EN480/raw/os75/en2010_196_43200.raw /home/data/EN480/raw/os75/en2010_196_50400.raw /home/data/EN480/raw/os75/en2010_196_57600.raw /home/data/EN480/raw/os75/en2010_196_64800.raw /home/data/EN480/raw/os75/en2010_196_72000.raw /home/data/EN480/raw/os75/en2010_196_79200.raw /home/data/EN480/raw/os75/en2010_197_00000.raw /home/data/EN480/raw/os75/en2010_197_07200.raw /home/data/EN480/raw/os75/en2010_197_14400.raw /home/data/EN480/raw/os75/en2010_197_21600.raw /home/data/EN480/raw/os75/en2010_197_28800.raw /home/data/EN480/raw/os75/en2010_197_36000.raw /home/data/EN480/raw/os75/en2010_197_43200.raw /home/data/EN480/raw/os75/en2010_197_50400.raw /home/data/EN480/raw/os75/en2010_197_57600.raw /home/data/EN480/raw/os75/en2010_197_64800.raw /home/data/EN480/raw/os75/en2010_197_72000.raw /home/data/EN480/raw/os75/en2010_197_79200.raw /home/data/EN480/raw/os75/en2010_198_00000.raw /home/data/EN480/raw/os75/en2010_198_07200.raw /home/data/EN480/raw/os75/en2010_198_14400.raw /home/data/EN480/raw/os75/en2010_198_21600.raw /home/data/EN480/raw/os75/en2010_198_28800.raw /home/data/EN480/raw/os75/en2010_198_36000.raw /home/data/EN480/raw/os75/en2010_198_43200.raw /home/data/EN480/raw/os75/en2010_198_50400.raw /home/data/EN480/raw/os75/en2010_198_57600.raw /home/data/EN480/raw/os75/en2010_198_64800.raw /home/data/EN480/raw/os75/en2010_198_72000.raw /home/data/EN480/raw/os75/en2010_198_79200.raw /home/data/EN480/raw/os75/en2010_199_00000.raw /home/data/EN480/raw/os75/en2010_199_07200.raw /home/data/EN480/raw/os75/en2010_199_14400.raw /home/data/EN480/raw/os75/en2010_199_21600.raw /home/data/EN480/raw/os75/en2010_199_28800.raw /home/data/EN480/raw/os75/en2010_199_36000.raw /home/data/EN480/raw/os75/en2010_199_43200.raw /home/data/EN480/raw/os75/en2010_199_50400.raw /home/data/EN480/raw/os75/en2010_199_57600.raw /home/data/EN480/raw/os75/en2010_199_64800.raw /home/data/EN480/raw/os75/en2010_199_72000.raw /home/data/EN480/raw/os75/en2010_199_79200.raw /home/data/EN480/raw/os75/en2010_200_00000.raw /home/data/EN480/raw/os75/en2010_200_07200.raw /home/data/EN480/raw/os75/en2010_200_14400.raw /home/data/EN480/raw/os75/en2010_200_21600.raw /home/data/EN480/raw/os75/en2010_200_28800.raw /home/data/EN480/raw/os75/en2010_200_36000.raw /home/data/EN480/raw/os75/en2010_200_43200.raw /home/data/EN480/raw/os75/en2010_200_50400.raw /home/data/EN480/raw/os75/en2010_200_57600.raw /home/data/EN480/raw/os75/en2010_200_64800.raw /home/data/EN480/raw/os75/en2010_200_72000.raw /home/data/EN480/raw/os75/en2010_200_79200.raw /home/data/EN480/raw/os75/en2010_201_00000.raw /home/data/EN480/raw/os75/en2010_201_07200.raw /home/data/EN480/raw/os75/en2010_201_14400.raw /home/data/EN480/raw/os75/en2010_201_21600.raw /home/data/EN480/raw/os75/en2010_201_28800.raw /home/data/EN480/raw/os75/en2010_201_36000.raw /home/data/EN480/raw/os75/en2010_201_43200.raw /home/data/EN480/raw/os75/en2010_201_50400.raw /home/data/EN480/raw/os75/en2010_201_57600.raw /home/data/EN480/raw/os75/en2010_201_64800.raw /home/data/EN480/raw/os75/en2010_201_72000.raw /home/data/EN480/raw/os75/en2010_201_79200.raw /home/data/EN480/raw/os75/en2010_202_00000.raw /home/data/EN480/raw/os75/en2010_202_07200.raw /home/data/EN480/raw/os75/en2010_202_14400.raw /home/data/EN480/raw/os75/en2010_202_21600.raw /home/data/EN480/raw/os75/en2010_202_28800.raw /home/data/EN480/raw/os75/en2010_202_36000.raw /home/data/EN480/raw/os75/en2010_202_43200.raw /home/data/EN480/raw/os75/en2010_202_50400.raw /home/data/EN480/raw/os75/en2010_202_57600.raw /home/data/EN480/raw/os75/en2010_202_64800.raw /home/data/EN480/raw/os75/en2010_202_72000.raw /home/data/EN480/raw/os75/en2010_202_79200.raw /home/data/EN480/raw/os75/en2010_203_00000.raw /home/data/EN480/raw/os75/en2010_203_07200.raw /home/data/EN480/raw/os75/en2010_203_14400.raw /home/data/EN480/raw/os75/en2010_203_21600.raw /home/data/EN480/raw/os75/en2010_203_28800.raw /home/data/EN480/raw/os75/en2010_203_36000.raw /home/data/EN480/raw/os75/en2010_203_43200.raw 2010-07-23 17:27:11,650 INFO quick_run Fri Jul 23 17:27:11 2010 2010-07-23 17:27:11,651 INFO quick_run about to load uhdas files 2010-07-23 17:27:11,651 INFO quick_run /home/data/EN480/raw/os75/en2010_193_70010.raw /home/data/EN480/raw/os75/en2010_193_72000.raw /home/data/EN480/raw/os75/en2010_193_79200.raw /home/data/EN480/raw/os75/en2010_194_00000.raw /home/data/EN480/raw/os75/en2010_194_07200.raw /home/data/EN480/raw/os75/en2010_194_14400.raw /home/data/EN480/raw/os75/en2010_194_21600.raw /home/data/EN480/raw/os75/en2010_194_28800.raw /home/data/EN480/raw/os75/en2010_194_36000.raw /home/data/EN480/raw/os75/en2010_194_43200.raw /home/data/EN480/raw/os75/en2010_194_50400.raw /home/data/EN480/raw/os75/en2010_194_57600.raw /home/data/EN480/raw/os75/en2010_194_64800.raw /home/data/EN480/raw/os75/en2010_194_72000.raw /home/data/EN480/raw/os75/en2010_194_79200.raw /home/data/EN480/raw/os75/en2010_195_00000.raw /home/data/EN480/raw/os75/en2010_195_07200.raw /home/data/EN480/raw/os75/en2010_195_14400.raw /home/data/EN480/raw/os75/en2010_195_21600.raw /home/data/EN480/raw/os75/en2010_195_28800.raw /home/data/EN480/raw/os75/en2010_195_36000.raw /home/data/EN480/raw/os75/en2010_195_43200.raw /home/data/EN480/raw/os75/en2010_195_50400.raw /home/data/EN480/raw/os75/en2010_195_57600.raw /home/data/EN480/raw/os75/en2010_195_64800.raw /home/data/EN480/raw/os75/en2010_195_72000.raw /home/data/EN480/raw/os75/en2010_195_79200.raw /home/data/EN480/raw/os75/en2010_196_00000.raw /home/data/EN480/raw/os75/en2010_196_07200.raw /home/data/EN480/raw/os75/en2010_196_14400.raw /home/data/EN480/raw/os75/en2010_196_21600.raw /home/data/EN480/raw/os75/en2010_196_28800.raw /home/data/EN480/raw/os75/en2010_196_36000.raw /home/data/EN480/raw/os75/en2010_196_43200.raw /home/data/EN480/raw/os75/en2010_196_50400.raw /home/data/EN480/raw/os75/en2010_196_57600.raw /home/data/EN480/raw/os75/en2010_196_64800.raw /home/data/EN480/raw/os75/en2010_196_72000.raw /home/data/EN480/raw/os75/en2010_196_79200.raw /home/data/EN480/raw/os75/en2010_197_00000.raw /home/data/EN480/raw/os75/en2010_197_07200.raw /home/data/EN480/raw/os75/en2010_197_14400.raw /home/data/EN480/raw/os75/en2010_197_21600.raw /home/data/EN480/raw/os75/en2010_197_28800.raw /home/data/EN480/raw/os75/en2010_197_36000.raw /home/data/EN480/raw/os75/en2010_197_43200.raw /home/data/EN480/raw/os75/en2010_197_50400.raw /home/data/EN480/raw/os75/en2010_197_57600.raw /home/data/EN480/raw/os75/en2010_197_64800.raw /home/data/EN480/raw/os75/en2010_197_72000.raw /home/data/EN480/raw/os75/en2010_197_79200.raw /home/data/EN480/raw/os75/en2010_198_00000.raw /home/data/EN480/raw/os75/en2010_198_07200.raw /home/data/EN480/raw/os75/en2010_198_14400.raw /home/data/EN480/raw/os75/en2010_198_21600.raw /home/data/EN480/raw/os75/en2010_198_28800.raw /home/data/EN480/raw/os75/en2010_198_36000.raw /home/data/EN480/raw/os75/en2010_198_43200.raw /home/data/EN480/raw/os75/en2010_198_50400.raw /home/data/EN480/raw/os75/en2010_198_57600.raw /home/data/EN480/raw/os75/en2010_198_64800.raw /home/data/EN480/raw/os75/en2010_198_72000.raw /home/data/EN480/raw/os75/en2010_198_79200.raw /home/data/EN480/raw/os75/en2010_199_00000.raw /home/data/EN480/raw/os75/en2010_199_07200.raw /home/data/EN480/raw/os75/en2010_199_14400.raw /home/data/EN480/raw/os75/en2010_199_21600.raw /home/data/EN480/raw/os75/en2010_199_28800.raw /home/data/EN480/raw/os75/en2010_199_36000.raw /home/data/EN480/raw/os75/en2010_199_43200.raw /home/data/EN480/raw/os75/en2010_199_50400.raw /home/data/EN480/raw/os75/en2010_199_57600.raw /home/data/EN480/raw/os75/en2010_199_64800.raw /home/data/EN480/raw/os75/en2010_199_72000.raw /home/data/EN480/raw/os75/en2010_199_79200.raw /home/data/EN480/raw/os75/en2010_200_00000.raw /home/data/EN480/raw/os75/en2010_200_07200.raw /home/data/EN480/raw/os75/en2010_200_14400.raw /home/data/EN480/raw/os75/en2010_200_21600.raw /home/data/EN480/raw/os75/en2010_200_28800.raw /home/data/EN480/raw/os75/en2010_200_36000.raw /home/data/EN480/raw/os75/en2010_200_43200.raw /home/data/EN480/raw/os75/en2010_200_50400.raw /home/data/EN480/raw/os75/en2010_200_57600.raw /home/data/EN480/raw/os75/en2010_200_64800.raw /home/data/EN480/raw/os75/en2010_200_72000.raw /home/data/EN480/raw/os75/en2010_200_79200.raw /home/data/EN480/raw/os75/en2010_201_00000.raw /home/data/EN480/raw/os75/en2010_201_07200.raw /home/data/EN480/raw/os75/en2010_201_14400.raw /home/data/EN480/raw/os75/en2010_201_21600.raw /home/data/EN480/raw/os75/en2010_201_28800.raw /home/data/EN480/raw/os75/en2010_201_36000.raw /home/data/EN480/raw/os75/en2010_201_43200.raw /home/data/EN480/raw/os75/en2010_201_50400.raw /home/data/EN480/raw/os75/en2010_201_57600.raw /home/data/EN480/raw/os75/en2010_201_64800.raw /home/data/EN480/raw/os75/en2010_201_72000.raw /home/data/EN480/raw/os75/en2010_201_79200.raw /home/data/EN480/raw/os75/en2010_202_00000.raw /home/data/EN480/raw/os75/en2010_202_07200.raw /home/data/EN480/raw/os75/en2010_202_14400.raw /home/data/EN480/raw/os75/en2010_202_21600.raw /home/data/EN480/raw/os75/en2010_202_28800.raw /home/data/EN480/raw/os75/en2010_202_36000.raw /home/data/EN480/raw/os75/en2010_202_43200.raw /home/data/EN480/raw/os75/en2010_202_50400.raw /home/data/EN480/raw/os75/en2010_202_57600.raw /home/data/EN480/raw/os75/en2010_202_64800.raw /home/data/EN480/raw/os75/en2010_202_72000.raw /home/data/EN480/raw/os75/en2010_202_79200.raw /home/data/EN480/raw/os75/en2010_203_00000.raw /home/data/EN480/raw/os75/en2010_203_07200.raw /home/data/EN480/raw/os75/en2010_203_14400.raw /home/data/EN480/raw/os75/en2010_203_21600.raw /home/data/EN480/raw/os75/en2010_203_28800.raw /home/data/EN480/raw/os75/en2010_203_36000.raw /home/data/EN480/raw/os75/en2010_203_43200.raw 2010-07-23 17:27:11,651 DEBUG quick_setup load/ldcodas.tmp exists 2010-07-23 17:27:11,651 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,651 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/load 2010-07-23 17:27:11,651 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,651 DEBUG quick_subs in /home/data/EN480/proc/os75nb/load 2010-07-23 17:27:11,651 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018'] 2010-07-23 17:27:11,652 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019'] 2010-07-23 17:27:11,652 DEBUG quick_subs starttime is 2010/07/23 00:40:33 2010-07-23 17:27:11,653 DEBUG quick_subs RESETTING thisload_time_range 2010-07-23 17:27:11,653 DEBUG quick_subs time range of data to be loaded: 2010/07/23 00:40:33 to 2010/07/23 12:43:58 2010-07-23 17:27:11,653 DEBUG quick_subs data startdd 203.028160 data enddd 203.530532 2010-07-23 17:27:11,653 DEBUG quick_subs about to load from these cmd files ['ens_blk019.cmd'] 2010-07-23 17:27:11,653 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_en DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk019.cmd 2010-07-23 17:27:11,653 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-07-23 17:27:11,681 DEBUG quick_subs removing a_endir.blk 2010-07-23 17:27:11,682 DEBUG quick_subs about to run mkblkdir 2010-07-23 17:27:11,682 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-07-23 17:27:11,682 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-07-23 17:27:11,688 DEBUG quick_subs database passes. 2010-07-23 17:27:11,688 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-07-23 17:27:11,688 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,688 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,688 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,689 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,689 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,689 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,689 DEBUG quick_subs dd0: 193.813877 dd1: 203.529329 2010-07-23 17:27:11,689 DEBUG quick_subs writing time range from a_en.lst to a_en.tr 2010-07-23 17:27:11,689 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,689 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,690 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,690 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-07-23 17:27:11,690 DEBUG quick_subs extracting time range 2010-07-23 17:27:11,690 DEBUG quick_subs start_end_time 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,690 DEBUG quick_subs dd0: 193.813877 dd1: 203.529329 2010-07-23 17:27:11,690 DEBUG quick_adcp loaded_time_range is 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,691 DEBUG quick_adcp (193.813877 to 203.529329) 2010-07-23 17:27:11,691 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,691 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/adcpdb 2010-07-23 17:27:11,691 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,691 DEBUG quick_subs dbname: a_en output: a_en.cnh time_ranges: all 2010-07-23 17:27:11,691 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-07-23 17:27:11,705 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-07-23 17:27:11,705 DEBUG quick_run executing commands from /home/data/EN480/proc/os75nb/edit 2010-07-23 17:27:11,705 DEBUG quick_run setup.m exists. not replacing 2010-07-23 17:27:11,705 DEBUG quick_run asetup.m exists. not replacing 2010-07-23 17:27:11,705 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-07-23 17:27:11,705 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-07-23 17:27:11,706 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,706 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/edit 2010-07-23 17:27:11,706 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,706 DEBUG quick_subs dbname: ../adcpdb/a_en pg_min: 50 set_range_bit time_ranges: all 2010-07-23 17:27:11,706 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-07-23 17:27:11,735 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-07-23 17:27:11,736 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,736 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:11,736 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,738 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-07-23 17:27:11,738 DEBUG quick_run hcorr_inst is ashpaq2 2010-07-23 17:27:11,738 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-07-23 17:27:11,738 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,738 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/rotate 2010-07-23 17:27:11,738 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,738 DEBUG quick_subs dbname: ../../adcpdb/a_en output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-07-23 17:27:11,739 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-07-23 17:27:11,759 DEBUG quick_run no available heading correction function specified 2010-07-23 17:27:11,759 DEBUG quick_run ------------ step 7: rotate ------------- 2010-07-23 17:27:11,759 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,759 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/rotate 2010-07-23 17:27:11,759 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,778 DEBUG quick_subs last rotated time from log file: 2010/07/23 12:43:58 2010-07-23 17:27:11,778 DEBUG quick_subs time range of currently loaded data: 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,779 DEBUG quick_subs (193.813877 to 203.529329) 2010-07-23 17:27:11,779 DEBUG quick_subs overriding last rotated time with last time in database, 2010/07/13 19:31:59 to 2010/07/23 12:42:14 2010-07-23 17:27:11,779 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-07-23 17:27:11,779 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,779 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/rotate 2010-07-23 17:27:11,780 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,780 DEBUG quick_subs DB_NAME: ../../adcpdb/a_en LOG_FILE: rotate.log TIME_RANGE: 2010/07/23 00:40:33 to 2010/07/23 12:43:58 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-07-23 17:27:11,780 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-07-23 17:27:11,784 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-07-23 17:27:11,784 DEBUG quick_setup nav/as_nav.tmp exists 2010-07-23 17:27:11,784 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,785 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:11,785 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,785 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/07/13 19:31:59 to 2010/07/23 12:42:14 /* the whole time range */ 2010-07-23 17:27:11,785 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-07-23 17:27:11,826 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-07-23 17:27:11,826 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,826 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:11,826 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,826 DEBUG quick_subs fix_file_type: simple reference_file: a_en.nav fix_file: a_en.gps output: a_en.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-07-23 17:27:11,827 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-07-23 17:27:11,857 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-07-23 17:27:11,857 DEBUG quick_setup nav/smoothr.tmp exists 2010-07-23 17:27:11,857 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:11,858 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:11,858 DEBUG quick_setup running python command "method" 2010-07-23 17:27:11,858 DEBUG quick_subs reference_file: a_en.nav refabs_output: a_en.ref output: a_en.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-07-23 17:27:11,858 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-07-23 17:27:12,017 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:12,017 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:12,017 DEBUG quick_setup running python command "method" 2010-07-23 17:27:12,018 DEBUG call_matlab --> clear all 2010-07-23 17:27:12,024 DEBUG call_matlab <-- >> 2010-07-23 17:27:12,025 DEBUG call_matlab --> close all 2010-07-23 17:27:12,057 DEBUG call_matlab <-- >> 2010-07-23 17:27:12,058 DEBUG call_matlab --> cd /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:12,059 DEBUG call_matlab <-- >> 2010-07-23 17:27:12,059 DEBUG call_matlab --> refsm 2010-07-23 17:27:12,766 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_en opened Searching CODAS database ==> ../adcpdb/a_en for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 2772 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2010-07-23 17:27:12,767 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-07-23 17:27:12,767 DEBUG quick_setup nav/putnav.tmp exists 2010-07-23 17:27:12,767 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:12,767 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:12,767 DEBUG quick_setup running python command "method" 2010-07-23 17:27:12,767 DEBUG quick_subs dbname: ../adcpdb/a_en position_file: refsm.sm year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-07-23 17:27:12,767 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-07-23 17:27:12,816 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2010-07-23 17:27:12,816 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:12,816 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:12,816 DEBUG quick_setup running python command "method" 2010-07-23 17:27:12,817 DEBUG quick_subs Created callrtmp.m 2010-07-23 17:27:12,817 DEBUG call_matlab --> clear all 2010-07-23 17:27:12,821 DEBUG call_matlab <-- >> 2010-07-23 17:27:12,821 DEBUG call_matlab --> close all 2010-07-23 17:27:12,854 DEBUG call_matlab <-- >> 2010-07-23 17:27:12,854 DEBUG call_matlab --> cd /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:12,856 DEBUG call_matlab <-- >> 2010-07-23 17:27:12,856 DEBUG call_matlab --> callrtmp_tmp 2010-07-23 17:27:13,849 DEBUG call_matlab <-- cruise = EN480 cruise = EN480 cruise = EN480 cruise = EN480 cruise = EN480 cruise = EN480 >> 2010-07-23 17:27:13,849 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-07-23 17:27:13,849 DEBUG quick_run find profile flags ------------ *** ------------- 2010-07-23 17:27:13,849 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:13,849 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/edit 2010-07-23 17:27:13,849 DEBUG quick_setup running python command "method" 2010-07-23 17:27:14,692 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-07-23 17:27:14,692 DEBUG quick_run starting in: /home/data/EN480/proc/os75nb 2010-07-23 17:27:14,692 DEBUG quick_run executing commands from: edit 2010-07-23 17:27:14,694 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_en abottom_tmp.asc 2010-07-23 17:27:14,697 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_en abadprf_tmp.asc 2010-07-23 17:27:14,699 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_en abadbin_tmp.asc 2010-07-23 17:27:14,706 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_en 30 2010-07-23 17:27:14,710 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-07-23 17:27:14,739 DEBUG quick_run changing directories back to /home/data/EN480/proc/os75nb 2010-07-23 17:27:14,739 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-07-23 17:27:14,739 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-07-23 17:27:14,739 DEBUG quick_setup nav/as_nav.tmp exists 2010-07-23 17:27:14,739 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:14,739 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:14,739 DEBUG quick_setup running python command "method" 2010-07-23 17:27:14,740 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/07/13 19:31:59 to 2010/07/23 12:42:14 /* the whole time range */ 2010-07-23 17:27:14,740 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-07-23 17:27:14,781 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-07-23 17:27:14,781 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:14,781 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:14,781 DEBUG quick_setup running python command "method" 2010-07-23 17:27:14,781 DEBUG quick_subs fix_file_type: simple reference_file: a_en.nav fix_file: a_en.gps output: a_en.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-07-23 17:27:14,781 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-07-23 17:27:14,812 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-07-23 17:27:14,812 DEBUG quick_setup nav/smoothr.tmp exists 2010-07-23 17:27:14,812 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:14,812 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:14,812 DEBUG quick_setup running python command "method" 2010-07-23 17:27:14,812 DEBUG quick_subs reference_file: a_en.nav refabs_output: a_en.ref output: a_en.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-07-23 17:27:14,813 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-07-23 17:27:14,971 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:14,972 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:14,972 DEBUG quick_setup running python command "method" 2010-07-23 17:27:14,972 DEBUG call_matlab --> clear all 2010-07-23 17:27:14,980 DEBUG call_matlab <-- >> 2010-07-23 17:27:14,981 DEBUG call_matlab --> close all 2010-07-23 17:27:15,015 DEBUG call_matlab <-- >> 2010-07-23 17:27:15,015 DEBUG call_matlab --> cd /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:15,016 DEBUG call_matlab <-- >> 2010-07-23 17:27:15,017 DEBUG call_matlab --> refsm 2010-07-23 17:27:15,704 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_en opened Searching CODAS database ==> ../adcpdb/a_en for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 2772 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2010-07-23 17:27:15,704 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-07-23 17:27:15,704 DEBUG quick_setup nav/putnav.tmp exists 2010-07-23 17:27:15,704 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:15,705 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:15,705 DEBUG quick_setup running python command "method" 2010-07-23 17:27:15,705 DEBUG quick_subs dbname: ../adcpdb/a_en position_file: refsm.sm year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-07-23 17:27:15,705 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-07-23 17:27:15,754 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2010-07-23 17:27:15,754 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:15,754 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:15,754 DEBUG quick_setup running python command "method" 2010-07-23 17:27:15,755 DEBUG quick_subs Created callrtmp.m 2010-07-23 17:27:15,755 DEBUG call_matlab --> clear all 2010-07-23 17:27:15,760 DEBUG call_matlab <-- >> 2010-07-23 17:27:15,761 DEBUG call_matlab --> close all 2010-07-23 17:27:15,794 DEBUG call_matlab <-- >> 2010-07-23 17:27:15,795 DEBUG call_matlab --> cd /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:15,796 DEBUG call_matlab <-- >> 2010-07-23 17:27:15,796 DEBUG call_matlab --> callrtmp_tmp 2010-07-23 17:27:17,282 DEBUG call_matlab <-- cruise = EN480 cruise = EN480 cruise = EN480 cruise = EN480 cruise = EN480 cruise = EN480 >> 2010-07-23 17:27:17,282 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-07-23 17:27:17,282 DEBUG quick_setup edit/lst_temp.tmp exists 2010-07-23 17:27:17,282 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,282 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/edit 2010-07-23 17:27:17,283 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,283 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en.tem step_size= 1 year_base= 2010 time_ranges: all 2010-07-23 17:27:17,283 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-07-23 17:27:17,306 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,306 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/edit 2010-07-23 17:27:17,307 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,812 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-07-23 17:27:17,812 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-07-23 17:27:17,812 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,812 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/botmtrk 2010-07-23 17:27:17,812 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,812 DEBUG quick_subs dbname: ../../adcpdb/a_en output: a_en.btm step_size= 1 year_base= 2010 time_ranges: 2010/07/13 19:31:59 to 2010/07/23 12:42:14 /* whole time range */ 2010-07-23 17:27:17,813 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-07-23 17:27:17,823 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-07-23 17:27:17,823 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,823 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/botmtrk 2010-07-23 17:27:17,823 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,823 DEBUG quick_subs fix_file_type: simple reference_file: a_en.btm fix_file: ../../nav/a_en.gps output: a_en.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-07-23 17:27:17,823 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-07-23 17:27:17,826 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,826 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/botmtrk 2010-07-23 17:27:17,826 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,826 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_en.ref','a_en.btm',... 'ADCP EN480 step size 1 ', 1); 2010-07-23 17:27:17,924 DEBUG quick_setup nav/as_nav.tmp exists 2010-07-23 17:27:17,924 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,924 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/nav 2010-07-23 17:27:17,924 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,924 DEBUG quick_subs dbname: ../adcpdb/a_en output: a_en step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/07/13 19:31:59 to 2010/07/23 12:42:14 /* the whole time range */ 2010-07-23 17:27:17,925 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-07-23 17:27:17,965 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-07-23 17:27:17,965 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,966 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/watertrk 2010-07-23 17:27:17,966 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,966 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_en.gps reference_file: ../../nav/a_en.nav output_file: a_en_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-07-23 17:27:17,966 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-07-23 17:27:17,978 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:17,978 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/cal/watertrk 2010-07-23 17:27:17,978 DEBUG quick_setup running python command "method" 2010-07-23 17:27:17,978 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_en_7.cal', 'ADCP EN480 7ens') 2010-07-23 17:27:17,979 DEBUG call_matlab --> clear all 2010-07-23 17:27:17,982 DEBUG call_matlab <-- >> 2010-07-23 17:27:17,982 DEBUG call_matlab --> close all 2010-07-23 17:27:18,017 DEBUG call_matlab <-- >> 2010-07-23 17:27:18,017 DEBUG call_matlab --> cd /home/data/EN480/proc/os75nb/cal/watertrk 2010-07-23 17:27:18,021 DEBUG call_matlab <-- >> 2010-07-23 17:27:18,021 DEBUG call_matlab --> calladcpcal_tmp 2010-07-23 17:27:18,680 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [14x11 double] igood: [13x1 double] >> 2010-07-23 17:27:18,680 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-07-23 17:27:18,680 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:18,680 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/vector 2010-07-23 17:27:18,680 DEBUG quick_setup running python command "method" 2010-07-23 17:27:18,681 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_en.tmp 2010-07-23 17:27:18,684 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:18,684 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/vector 2010-07-23 17:27:18,684 DEBUG quick_setup running python command "method" 2010-07-23 17:27:18,684 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-07-23 17:27:18,749 DEBUG quick_asect done making vector matfiles 2010-07-23 17:27:18,749 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:18,749 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/contour 2010-07-23 17:27:18,750 DEBUG quick_setup running python command "method" 2010-07-23 17:27:18,750 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_en.tmp 2010-07-23 17:27:18,755 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:18,755 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/contour 2010-07-23 17:27:18,755 DEBUG quick_setup running python command "method" 2010-07-23 17:27:18,755 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-07-23 17:27:18,849 DEBUG quick_setup starting in /home/data/EN480/proc/os75nb 2010-07-23 17:27:18,849 DEBUG quick_setup executing commands from /home/data/EN480/proc/os75nb/contour 2010-07-23 17:27:18,849 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_en 2010-07-23 17:27:19,047 DEBUG quick_asect done running getmat with "allbins" 2010-07-23 17:27:19,047 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-07-23 17:27:19,047 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-07-23 17:27:19,047 DEBUG root matfile is contour/contour_uv.mat 2010-07-23 17:27:19,051 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-07-23 17:27:19,051 DEBUG root matfile is vector/vector_uv.mat 2010-07-23 17:27:19,052 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-07-23 17:27:19,052 DEBUG root matfile is contour/contour_xy.mat 2010-07-23 17:27:19,052 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-07-23 17:27:19,052 DEBUG root matfile is vector/vector_xy.mat 2010-07-23 17:27:19,053 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-07-23 17:27:19,053 DEBUG root about to copy file edit/a_en.tem to /home/adcp/www/data/os75nb_temp.asc 2010-07-23 17:27:19,053 INFO root copying edit/a_en.tem to /home/adcp/www/data/os75nb_temp.asc 2010-07-23 17:27:19,054 INFO root Ending quick_adcp.py 2010-07-23 17:27:19,106 DEBUG quick_setup killed matlab engine