2010-10-07 21:07:45,021 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase lucid_test10 --cruisename lucid_test10 --instclass os --instname os75 --dbname a_at --datatype uhdas --datadir /home/data/lucid_test10/raw/os75 --cfgpath /home/data/lucid_test10/proc/os75nb/config --ens_len 300 --ping_headcor --hcorr_inst phins --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 2 --quiet --auto --npycalc all --mplplots all 2010-10-07 21:07:45,022 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os75nb --npycalc all --mplplots all 2010-10-07 21:07:45,025 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2010-10-07 21:07:45,026 DEBUG quick_adcp progdir = /home/currents/programs 2010-10-07 21:07:45,026 DEBUG quick_adcp binos = lnx 2010-10-07 21:07:45,027 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-10-07 21:07:45,027 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-10-07 21:07:45,027 DEBUG quick_setup numpy calculations to run: refsm 2010-10-07 21:07:45,027 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2010-10-07 21:07:45,028 DEBUG quick_setup processing data logged with uhdas: 2010-10-07 21:07:45,028 DEBUG quick_setup datatype is uhdas 2010-10-07 21:07:45,028 DEBUG quick_setup pingtype is nb 2010-10-07 21:07:45,028 DEBUG quick_setup instclass is os 2010-10-07 21:07:45,028 DEBUG quick_setup no post-processing heading correction will be used 2010-10-07 21:07:45,029 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-10-07 21:07:45,060 DEBUG quick_setup found (in edit/asetup.m): 2010-10-07 21:07:45,060 DEBUG quick_setup config.beamangle is 30 2010-10-07 21:07:45,060 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'lucid_test10',... 'cfgpath' , '/home/data/lucid_test10/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-10-07 21:07:45,060 DEBUG quick_setup ------- starting Matlab engine ------- 2010-10-07 21:07:45,061 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-10-07 21:07:45,066 DEBUG call_matlab starting to wait for initial prompt 2010-10-07 21:07:46,559 DEBUG call_matlab received initial prompt 2010-10-07 21:07:47,074 DEBUG quick_adcp cwd is /home/data/lucid_test10/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-07 21:07:47,075 DEBUG quick_adcp original fix file is a_at.gps 2010-10-07 21:07:47,075 DEBUG quick_adcp smoothed nav file is a_at_refsm.asc 2010-10-07 21:07:47,075 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-10-07 21:07:47,083 DEBUG quick_subs found 14 files using wildcard expansion from "/home/data/lucid_test10/raw/os75/*.raw" 2010-10-07 21:07:47,083 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/lucid_test10/raw/os75/at2010_278_68861.raw /home/data/lucid_test10/raw/os75/at2010_278_72000.raw /home/data/lucid_test10/raw/os75/at2010_278_79200.raw /home/data/lucid_test10/raw/os75/at2010_279_00000.raw /home/data/lucid_test10/raw/os75/at2010_279_07200.raw /home/data/lucid_test10/raw/os75/at2010_279_14400.raw /home/data/lucid_test10/raw/os75/at2010_279_21600.raw /home/data/lucid_test10/raw/os75/at2010_279_28800.raw /home/data/lucid_test10/raw/os75/at2010_279_36000.raw /home/data/lucid_test10/raw/os75/at2010_279_43200.raw /home/data/lucid_test10/raw/os75/at2010_279_50400.raw /home/data/lucid_test10/raw/os75/at2010_279_57600.raw /home/data/lucid_test10/raw/os75/at2010_279_64800.raw /home/data/lucid_test10/raw/os75/at2010_279_72000.raw 2010-10-07 21:07:47,083 DEBUG quick_adcp LASTFILES invoked. using only 14 files from end of filelist 2010-10-07 21:07:47,084 DEBUG quick_adcp using delblks = 1 2010-10-07 21:07:47,084 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/lucid_test10/raw/os75/at2010_278_68861.raw /home/data/lucid_test10/raw/os75/at2010_278_72000.raw /home/data/lucid_test10/raw/os75/at2010_278_79200.raw /home/data/lucid_test10/raw/os75/at2010_279_00000.raw /home/data/lucid_test10/raw/os75/at2010_279_07200.raw /home/data/lucid_test10/raw/os75/at2010_279_14400.raw /home/data/lucid_test10/raw/os75/at2010_279_21600.raw /home/data/lucid_test10/raw/os75/at2010_279_28800.raw /home/data/lucid_test10/raw/os75/at2010_279_36000.raw /home/data/lucid_test10/raw/os75/at2010_279_43200.raw /home/data/lucid_test10/raw/os75/at2010_279_50400.raw /home/data/lucid_test10/raw/os75/at2010_279_57600.raw /home/data/lucid_test10/raw/os75/at2010_279_64800.raw /home/data/lucid_test10/raw/os75/at2010_279_72000.raw 2010-10-07 21:07:47,085 DEBUG quick_adcp Thu Oct 7 21:07:47 2010 running quick_adcp.py as follows: --cntfile /home/data/lucid_test10/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_at cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525, 550, 575, 600, 625, 650, 675, 700, 725, 750, 775] firstdepth 44 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_at allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase lucid_test10 cfgpath /home/data/lucid_test10/proc/os75nb/config cntfile /home/data/lucid_test10/proc/os75nb/os75nb_qpy.cnt commands None cruisename lucid_test10 data_def vmadcp.def datadir /home/data/lucid_test10/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/lucid_test10/raw/os75/at2010_278_68861.raw', '/home/data/lucid_test10/raw/os75/at2010_278_72000.raw', '/home/data/lucid_test10/raw/os75/at2010_278_79200.raw', '/home/data/lucid_test10/raw/os75/at2010_279_00000.raw', '/home/data/lucid_test10/raw/os75/at2010_279_07200.raw', '/home/data/lucid_test10/raw/os75/at2010_279_14400.raw', '/home/data/lucid_test10/raw/os75/at2010_279_21600.raw', '/home/data/lucid_test10/raw/os75/at2010_279_28800.raw', '/home/data/lucid_test10/raw/os75/at2010_279_36000.raw', '/home/data/lucid_test10/raw/os75/at2010_279_43200.raw', '/home/data/lucid_test10/raw/os75/at2010_279_50400.raw', '/home/data/lucid_test10/raw/os75/at2010_279_57600.raw', '/home/data/lucid_test10/raw/os75/at2010_279_64800.raw', '/home/data/lucid_test10/raw/os75/at2010_279_72000.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 44 fixfile a_at.gps hcorr_inst phins head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'lucid_test10',... 'cfgpath' , '/home/data/lucid_test10/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_at.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False printformats png proc_yearbase 2010 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/lucid_test10/raw/os75/at2010_278_68861.raw', '/home/data/lucid_test10/raw/os75/at2010_278_72000.raw', '/home/data/lucid_test10/raw/os75/at2010_278_79200.raw', '/home/data/lucid_test10/raw/os75/at2010_279_00000.raw', '/home/data/lucid_test10/raw/os75/at2010_279_07200.raw', '/home/data/lucid_test10/raw/os75/at2010_279_14400.raw', '/home/data/lucid_test10/raw/os75/at2010_279_21600.raw', '/home/data/lucid_test10/raw/os75/at2010_279_28800.raw', '/home/data/lucid_test10/raw/os75/at2010_279_36000.raw', '/home/data/lucid_test10/raw/os75/at2010_279_43200.raw', '/home/data/lucid_test10/raw/os75/at2010_279_50400.raw', '/home/data/lucid_test10/raw/os75/at2010_279_57600.raw', '/home/data/lucid_test10/raw/os75/at2010_279_64800.raw', '/home/data/lucid_test10/raw/os75/at2010_279_72000.raw'] setup_info False skip_avg True smfile a_at_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 2 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-07 21:07:47,086 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-10-07 21:07:47,086 DEBUG quick_run scanning files for time ranges... 2010-10-07 21:07:47,087 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb/scan 2010-10-07 21:07:47,087 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/scan 2010-10-07 21:07:47,087 DEBUG quick_setup running python command "scanraw" 2010-10-07 21:07:47,088 DEBUG call_matlab --> clear all 2010-10-07 21:07:47,097 DEBUG call_matlab <-- >> 2010-10-07 21:07:47,098 DEBUG call_matlab --> close all 2010-10-07 21:07:47,136 DEBUG call_matlab <-- >> 2010-10-07 21:07:47,136 DEBUG call_matlab --> cd /home/data/lucid_test10/proc/os75nb/scan 2010-10-07 21:07:47,140 DEBUG call_matlab <-- >> 2010-10-07 21:07:47,140 DEBUG call_matlab --> scan_tmp 2010-10-07 21:07:48,589 DEBUG call_matlab <-- getting config files from "/home/data/lucid_test10/proc/os75nb/config" running "lucid_test10_cfg.m" running "lucid_test10_proc.m" writing scan info to a_at.scn >> 2010-10-07 21:07:48,590 DEBUG quick_run writing time range from a_at.scn to a_at.tr 2010-10-07 21:07:48,590 DEBUG quick_run getting scan time range 2010-10-07 21:07:48,590 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,591 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/scan 2010-10-07 21:07:48,591 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,591 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,593 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,595 DEBUG quick_subs start_end_time 2010/10/06 19:07:44 to 2010/10/07 21:04:24 2010-10-07 21:07:48,595 DEBUG quick_subs dd0: 278.797037 dd1: 279.878056 2010-10-07 21:07:48,596 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,596 DEBUG quick_adcp looking for database with adcpdb/a_at*.blk 2010-10-07 21:07:48,597 DEBUG quick_adcp database found: listing blocks 2010-10-07 21:07:48,598 DEBUG quick_subs removing a_atdir.blk 2010-10-07 21:07:48,598 DEBUG quick_subs about to run mkblkdir 2010-10-07 21:07:48,598 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-07 21:07:48,599 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-07 21:07:48,615 DEBUG quick_subs database passes. 2010-10-07 21:07:48,616 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2010-10-07 21:07:48,616 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,616 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,617 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,617 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,617 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,618 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 20:34:05 2010-10-07 21:07:48,618 DEBUG quick_subs dd0: 278.800544 dd1: 279.857002 2010-10-07 21:07:48,619 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2010-10-07 21:07:48,619 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,619 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,619 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,620 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,620 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,621 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 20:34:05 2010-10-07 21:07:48,621 DEBUG quick_subs dd0: 278.800544 dd1: 279.857002 2010-10-07 21:07:48,621 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-10-07 21:07:48,622 DEBUG quick_adcp origdb_time_range is 2010/10/06 19:12:47 to 2010/10/07 20:34:05 2010-10-07 21:07:48,622 DEBUG quick_adcp (278.800544 to 279.857002) 2010-10-07 21:07:48,622 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-10-07 21:07:48,623 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-07 21:07:48,623 DEBUG quick_subs ['adcpdb/a_at003.blk', 'adcpdb/a_atdir.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at002.blk'] 2010-10-07 21:07:48,624 DEBUG quick_subs length is 4 2010-10-07 21:07:48,624 DEBUG quick_subs removing a_atdir.blk 2010-10-07 21:07:48,624 DEBUG quick_subs about to run mkblkdir 2010-10-07 21:07:48,625 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-07 21:07:48,625 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-07 21:07:48,640 DEBUG quick_subs database passes. 2010-10-07 21:07:48,640 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2010-10-07 21:07:48,641 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,641 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,641 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,641 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,642 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,643 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 20:34:05 2010-10-07 21:07:48,643 DEBUG quick_subs dd0: 278.800544 dd1: 279.857002 2010-10-07 21:07:48,643 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,643 DEBUG quick_subs reading time range 2010-10-07 21:07:48,644 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 20:34:05 2010-10-07 21:07:48,644 DEBUG quick_subs dd0: 278.800544 dd1: 279.857002 2010-10-07 21:07:48,645 INFO quick_subs Thu Oct 7 21:07:48 2010 2010-10-07 21:07:48,645 INFO quick_subs checking database time range by listblk 2010-10-07 21:07:48,645 DEBUG quick_subs removing a_atdir.blk 2010-10-07 21:07:48,646 DEBUG quick_subs about to run mkblkdir 2010-10-07 21:07:48,646 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-07 21:07:48,646 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-07 21:07:48,661 DEBUG quick_subs database passes. 2010-10-07 21:07:48,662 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2010-10-07 21:07:48,662 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,663 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,663 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,663 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,663 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,664 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 20:34:05 2010-10-07 21:07:48,664 DEBUG quick_subs dd0: 278.800544 dd1: 279.857002 2010-10-07 21:07:48,667 INFO quick_subs found line /* 0 n= 146 a_at001.blk */ 2010/10/06 19:12:47 to 2010/10/07 07:18:22 2010-10-07 21:07:48,667 INFO quick_subs found line /* 1 n= 146 a_at002.blk */ 2010/10/07 07:23:22 to 2010/10/07 19:34:00 2010-10-07 21:07:48,668 INFO quick_subs found line /* 2 n= 12 a_at003.blk */ 2010/10/07 19:39:00 to 2010/10/07 20:34:05 2010-10-07 21:07:48,668 INFO quick_subs scan data start at 278.7970370 2010-10-07 21:07:48,668 INFO quick_subs scan time range: 2010/10/06 19:07:44 to 2010/10/07 21:04:24 2010-10-07 21:07:48,669 INFO quick_subs codasdb ends at 279.8570023 (2010/10/07 20:34:05) 2010-10-07 21:07:48,669 DEBUG quick_subs ... changed dirs, in /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,670 DEBUG quick_subs deleting these files: ['a_at003.blk'] 2010-10-07 21:07:48,670 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-07 21:07:48,670 DEBUG quick_subs ['adcpdb/a_at001.blk', 'adcpdb/a_at002.blk'] 2010-10-07 21:07:48,671 DEBUG quick_subs length is 2 2010-10-07 21:07:48,671 DEBUG quick_subs about to run mkblkdir 2010-10-07 21:07:48,671 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-07 21:07:48,672 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-07 21:07:48,687 DEBUG quick_subs database passes. 2010-10-07 21:07:48,687 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2010-10-07 21:07:48,688 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,688 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,688 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,688 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,689 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,689 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 19:34:00 2010-10-07 21:07:48,690 DEBUG quick_subs dd0: 278.800544 dd1: 279.815278 2010-10-07 21:07:48,690 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,690 DEBUG quick_subs reading time range 2010-10-07 21:07:48,691 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 19:34:00 2010-10-07 21:07:48,691 DEBUG quick_subs dd0: 278.800544 dd1: 279.815278 2010-10-07 21:07:48,691 DEBUG quick_subs codas database currently goes from 2010/10/06 19:12:47 to 2010/10/07 19:34:00 2010-10-07 21:07:48,692 DEBUG quick_subs (278.800544 to 279.815278) 2010-10-07 21:07:48,692 DEBUG quick_subs 001found existing adcpdb blocks: %s 002 2010-10-07 21:07:48,694 DEBUG quick_subs found existing ens_blk files: 001 002 003 2010-10-07 21:07:48,694 DEBUG quick_subs checked: loaded blkstrs: ['001', '002'] 2010-10-07 21:07:48,694 DEBUG quick_subs checked: unloaded blkstrs: ['003'] 2010-10-07 21:07:48,694 DEBUG quick_subs first unloaded file is load/ens_blk003.cmd 2010-10-07 21:07:48,695 DEBUG quick_subs data goes from 2010/10/07 19:39:00 to 2010/10/07 21:04:24 2010-10-07 21:07:48,695 DEBUG quick_subs (279.818750 to 279.878056) 2010-10-07 21:07:48,696 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/lucid_test10/raw/os75/at2010_278_68861.raw /home/data/lucid_test10/raw/os75/at2010_278_72000.raw /home/data/lucid_test10/raw/os75/at2010_278_79200.raw /home/data/lucid_test10/raw/os75/at2010_279_00000.raw /home/data/lucid_test10/raw/os75/at2010_279_07200.raw /home/data/lucid_test10/raw/os75/at2010_279_14400.raw /home/data/lucid_test10/raw/os75/at2010_279_21600.raw /home/data/lucid_test10/raw/os75/at2010_279_28800.raw /home/data/lucid_test10/raw/os75/at2010_279_36000.raw /home/data/lucid_test10/raw/os75/at2010_279_43200.raw /home/data/lucid_test10/raw/os75/at2010_279_50400.raw /home/data/lucid_test10/raw/os75/at2010_279_57600.raw /home/data/lucid_test10/raw/os75/at2010_279_64800.raw /home/data/lucid_test10/raw/os75/at2010_279_72000.raw 2010-10-07 21:07:48,696 INFO quick_run Thu Oct 7 21:07:48 2010 2010-10-07 21:07:48,696 INFO quick_run about to load uhdas files 2010-10-07 21:07:48,696 INFO quick_run /home/data/lucid_test10/raw/os75/at2010_278_68861.raw /home/data/lucid_test10/raw/os75/at2010_278_72000.raw /home/data/lucid_test10/raw/os75/at2010_278_79200.raw /home/data/lucid_test10/raw/os75/at2010_279_00000.raw /home/data/lucid_test10/raw/os75/at2010_279_07200.raw /home/data/lucid_test10/raw/os75/at2010_279_14400.raw /home/data/lucid_test10/raw/os75/at2010_279_21600.raw /home/data/lucid_test10/raw/os75/at2010_279_28800.raw /home/data/lucid_test10/raw/os75/at2010_279_36000.raw /home/data/lucid_test10/raw/os75/at2010_279_43200.raw /home/data/lucid_test10/raw/os75/at2010_279_50400.raw /home/data/lucid_test10/raw/os75/at2010_279_57600.raw /home/data/lucid_test10/raw/os75/at2010_279_64800.raw /home/data/lucid_test10/raw/os75/at2010_279_72000.raw 2010-10-07 21:07:48,697 DEBUG quick_setup load/ldcodas.tmp exists 2010-10-07 21:07:48,697 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,697 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/load 2010-10-07 21:07:48,697 DEBUG quick_setup running python command "ldcodas" 2010-10-07 21:07:48,698 DEBUG quick_subs in /home/data/lucid_test10/proc/os75nb/load 2010-10-07 21:07:48,698 DEBUG quick_subs found block strings: ['001', '002'] 2010-10-07 21:07:48,699 DEBUG quick_subs found cmd blk strings: ['001', '002', '003'] 2010-10-07 21:07:48,699 DEBUG quick_subs starttime is 2010/10/07 19:39:00 2010-10-07 21:07:48,700 DEBUG quick_subs RESETTING thisload_time_range 2010-10-07 21:07:48,700 DEBUG quick_subs time range of data to be loaded: 2010/10/07 19:39:00 to 2010/10/07 21:04:24 2010-10-07 21:07:48,700 DEBUG quick_subs data startdd 279.818750 data enddd 279.878056 2010-10-07 21:07:48,700 DEBUG quick_subs about to load from these cmd files ['ens_blk003.cmd'] 2010-10-07 21:07:48,701 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk003.cmd 2010-10-07 21:07:48,701 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-10-07 21:07:48,718 DEBUG quick_subs removing a_atdir.blk 2010-10-07 21:07:48,719 DEBUG quick_subs about to run mkblkdir 2010-10-07 21:07:48,719 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-07 21:07:48,719 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-07 21:07:48,734 DEBUG quick_subs database passes. 2010-10-07 21:07:48,734 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2010-10-07 21:07:48,735 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,735 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,735 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,736 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,736 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,737 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 21:04:06 2010-10-07 21:07:48,737 DEBUG quick_subs dd0: 278.800544 dd1: 279.877847 2010-10-07 21:07:48,737 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2010-10-07 21:07:48,738 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,738 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,738 DEBUG quick_setup running python command "get_time_range" 2010-10-07 21:07:48,738 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-07 21:07:48,739 DEBUG quick_subs extracting time range 2010-10-07 21:07:48,739 DEBUG quick_subs start_end_time 2010/10/06 19:12:47 to 2010/10/07 21:04:06 2010-10-07 21:07:48,740 DEBUG quick_subs dd0: 278.800544 dd1: 279.877847 2010-10-07 21:07:48,740 DEBUG quick_adcp loaded_time_range is 2010/10/06 19:12:47 to 2010/10/07 21:04:06 2010-10-07 21:07:48,740 DEBUG quick_adcp (278.800544 to 279.877847) 2010-10-07 21:07:48,741 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,741 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/adcpdb 2010-10-07 21:07:48,741 DEBUG quick_setup running python command "lst_conf" 2010-10-07 21:07:48,742 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2010-10-07 21:07:48,742 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-10-07 21:07:48,753 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-10-07 21:07:48,754 DEBUG quick_run executing commands from /home/data/lucid_test10/proc/os75nb/edit 2010-10-07 21:07:48,754 DEBUG quick_run setup.m exists. not replacing 2010-10-07 21:07:48,754 DEBUG quick_run asetup.m exists. not replacing 2010-10-07 21:07:48,754 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-10-07 21:07:48,755 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-10-07 21:07:48,755 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,755 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/edit 2010-10-07 21:07:48,756 DEBUG quick_setup running python command "setflags" 2010-10-07 21:07:48,756 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2010-10-07 21:07:48,756 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-07 21:07:48,797 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-10-07 21:07:48,798 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,798 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:48,798 DEBUG quick_setup running python command "catnav" 2010-10-07 21:07:48,800 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-10-07 21:07:48,801 DEBUG quick_run hcorr_inst is phins 2010-10-07 21:07:48,801 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-10-07 21:07:48,801 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,801 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/cal/rotate 2010-10-07 21:07:48,802 DEBUG quick_setup running python command "lst_hdg" 2010-10-07 21:07:48,802 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-10-07 21:07:48,802 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-10-07 21:07:48,829 DEBUG quick_run no available heading correction function specified 2010-10-07 21:07:48,830 DEBUG quick_run ------------ step 7: rotate ------------- 2010-10-07 21:07:48,830 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,830 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/cal/rotate 2010-10-07 21:07:48,831 DEBUG quick_setup running python command "rotated" 2010-10-07 21:07:48,840 DEBUG quick_subs last rotated time from log file: 2010/10/07 20:34:21 2010-10-07 21:07:48,843 DEBUG quick_subs time range of currently loaded data: 2010/10/06 19:12:47 to 2010/10/07 21:04:06 2010-10-07 21:07:48,843 DEBUG quick_subs (278.800544 to 279.877847) 2010-10-07 21:07:48,843 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-10-07 21:07:48,844 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,844 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/cal/rotate 2010-10-07 21:07:48,844 DEBUG quick_setup running python command "rotate" 2010-10-07 21:07:48,845 DEBUG quick_subs DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2010/10/07 19:39:00 to 2010/10/07 21:04:24 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-10-07 21:07:48,845 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-10-07 21:07:48,876 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-07 21:07:48,876 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-07 21:07:48,877 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,877 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:48,877 DEBUG quick_setup running python command "as_nav" 2010-10-07 21:07:48,877 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/06 19:12:47 to 2010/10/07 21:04:06 /* the whole time range */ 2010-10-07 21:07:48,878 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-07 21:07:48,921 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-07 21:07:48,921 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,922 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:48,922 DEBUG quick_setup running python command "refabs" 2010-10-07 21:07:48,922 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-07 21:07:48,923 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-07 21:07:48,955 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-07 21:07:48,956 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-07 21:07:48,956 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:48,957 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:48,957 DEBUG quick_setup running python command "smoothr" 2010-10-07 21:07:48,957 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-07 21:07:48,958 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-07 21:07:49,074 DEBUG quick_adcp about to run numpy refsm 2010-10-07 21:07:49,075 DEBUG quick_npy Starting: refsm 2010-10-07 21:07:49,165 INFO nav dtmin = -0.50 dtmax = 0.50 2010-10-07 21:07:49,332 DEBUG quick_npy Ending: refsm 2010-10-07 21:07:49,332 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-07 21:07:49,332 DEBUG quick_setup nav/putnav.tmp exists 2010-10-07 21:07:49,333 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:49,333 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:49,333 DEBUG quick_setup running python command "putnav" 2010-10-07 21:07:49,334 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-07 21:07:49,334 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-07 21:07:49,355 DEBUG quick_adcp plotting navigation 2010-10-07 21:07:49,355 DEBUG quick_mpl Starting plot: nav 2010-10-07 21:07:50,128 DEBUG quick_mpl Ending plot: nav 2010-10-07 21:07:50,128 DEBUG quick_mpl Starting plot: refl 2010-10-07 21:07:50,160 DEBUG quick_mplplots found 1.073827 days of data 2010-10-07 21:07:50,160 DEBUG quick_mplplots start day is 278.000000 2010-10-07 21:07:50,160 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-07 21:07:50,161 DEBUG quick_mplplots printing 1 pages 2010-10-07 21:07:50,161 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-07 21:07:50,161 INFO quick_mplplots startdd is 278.0 2010-10-07 21:07:50,161 INFO quick_mplplots dt is 2.0 2010-10-07 21:07:51,075 DEBUG quick_mpl Ending plot: refl 2010-10-07 21:07:51,076 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-10-07 21:07:51,076 DEBUG quick_run find profile flags ------------ *** ------------- 2010-10-07 21:07:51,077 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:51,077 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/edit 2010-10-07 21:07:51,077 DEBUG quick_setup running python command "aedit" 2010-10-07 21:07:53,434 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-10-07 21:07:53,438 DEBUG quick_run starting in: /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:53,438 DEBUG quick_run executing commands from: edit 2010-10-07 21:07:53,444 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_at abadbin_tmp.asc 2010-10-07 21:07:53,455 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_at 30 2010-10-07 21:07:53,466 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-07 21:07:53,483 DEBUG quick_run changing directories back to /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:53,484 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-10-07 21:07:53,484 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-07 21:07:53,484 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-07 21:07:53,485 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:53,485 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:53,485 DEBUG quick_setup running python command "as_nav" 2010-10-07 21:07:53,486 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/06 19:12:47 to 2010/10/07 21:04:06 /* the whole time range */ 2010-10-07 21:07:53,486 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-07 21:07:53,508 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-07 21:07:53,509 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:53,509 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:53,509 DEBUG quick_setup running python command "refabs" 2010-10-07 21:07:53,510 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-07 21:07:53,510 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-07 21:07:53,527 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-07 21:07:53,527 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-07 21:07:53,527 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:53,528 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:53,528 DEBUG quick_setup running python command "smoothr" 2010-10-07 21:07:53,528 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-07 21:07:53,529 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-07 21:07:53,581 DEBUG quick_adcp running refsm 2010-10-07 21:07:53,581 DEBUG quick_npy Starting: refsm 2010-10-07 21:07:53,625 INFO nav dtmin = -0.50 dtmax = 0.50 2010-10-07 21:07:53,696 DEBUG quick_npy Ending: refsm 2010-10-07 21:07:53,697 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-07 21:07:53,697 DEBUG quick_setup nav/putnav.tmp exists 2010-10-07 21:07:53,697 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:53,697 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:53,698 DEBUG quick_setup running python command "putnav" 2010-10-07 21:07:53,698 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: a_at_refsm.asc year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-07 21:07:53,698 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-07 21:07:53,720 DEBUG quick_mpl Starting plot: nav 2010-10-07 21:07:54,733 DEBUG quick_mpl Ending plot: nav 2010-10-07 21:07:54,734 DEBUG quick_mpl Starting plot: refl 2010-10-07 21:07:54,765 DEBUG quick_mplplots found 1.073827 days of data 2010-10-07 21:07:54,765 DEBUG quick_mplplots start day is 278.000000 2010-10-07 21:07:54,766 DEBUG quick_mplplots figures with 2.000000 days per page 2010-10-07 21:07:54,766 DEBUG quick_mplplots printing 1 pages 2010-10-07 21:07:54,766 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2010-10-07 21:07:54,766 INFO quick_mplplots startdd is 278.0 2010-10-07 21:07:54,767 INFO quick_mplplots dt is 2.0 2010-10-07 21:07:55,666 DEBUG quick_mpl Ending plot: refl 2010-10-07 21:07:55,667 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-10-07 21:07:55,667 DEBUG quick_setup edit/lst_temp.tmp exists 2010-10-07 21:07:55,667 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:55,667 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/edit 2010-10-07 21:07:55,668 DEBUG quick_setup running python command "lst_temp" 2010-10-07 21:07:55,668 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at.tem step_size= 1 year_base= 2010 time_ranges: all 2010-10-07 21:07:55,668 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-10-07 21:07:55,684 DEBUG quick_mpl Starting plot: temp 2010-10-07 21:07:55,697 DEBUG quick_mplplots plotting 310 points 2010-10-07 21:07:56,295 DEBUG quick_mpl Ending plot: temp 2010-10-07 21:07:56,295 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-10-07 21:07:56,296 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-10-07 21:07:56,296 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,296 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/cal/botmtrk 2010-10-07 21:07:56,297 DEBUG quick_setup running python command "lst_btrk" 2010-10-07 21:07:56,297 DEBUG quick_subs dbname: ../../adcpdb/a_at output: a_at.btm step_size= 1 year_base= 2010 time_ranges: 2010/10/06 19:12:47 to 2010/10/07 21:04:06 /* whole time range */ 2010-10-07 21:07:56,297 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-10-07 21:07:56,309 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-10-07 21:07:56,309 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,310 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/cal/botmtrk 2010-10-07 21:07:56,310 DEBUG quick_setup running python command "refabsbt" 2010-10-07 21:07:56,310 DEBUG quick_subs fix_file_type: simple reference_file: a_at.btm fix_file: ../../nav/a_at.gps output: a_at.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-10-07 21:07:56,311 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-10-07 21:07:56,320 DEBUG quick_mpl Starting plot: btcal 2010-10-07 21:07:56,322 DEBUG quick_mplplots No data in a_at.btm 2010-10-07 21:07:56,322 DEBUG quick_mplplots Returning from Btplot with no output 2010-10-07 21:07:56,322 DEBUG quick_mpl Ending plot: btcal 2010-10-07 21:07:56,323 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-07 21:07:56,323 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,323 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/nav 2010-10-07 21:07:56,323 DEBUG quick_setup running python command "as_nav" 2010-10-07 21:07:56,324 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/06 19:12:47 to 2010/10/07 21:04:06 /* the whole time range */ 2010-10-07 21:07:56,324 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-07 21:07:56,346 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-10-07 21:07:56,346 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,346 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/cal/watertrk 2010-10-07 21:07:56,347 DEBUG quick_setup running python command "timslip" 2010-10-07 21:07:56,347 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_at.gps reference_file: ../../nav/a_at.nav output_file: a_at_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-10-07 21:07:56,347 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-10-07 21:07:56,358 DEBUG quick_mpl Starting plot: wtcal 2010-10-07 21:07:56,360 DEBUG quick_mplplots Found 0 calibration points 2010-10-07 21:07:56,361 DEBUG quick_mplplots Only 0 valid points found; quitting 2010-10-07 21:07:56,361 DEBUG quick_mpl Ending plot: wtcal 2010-10-07 21:07:56,362 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-10-07 21:07:56,362 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,362 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/vector 2010-10-07 21:07:56,363 DEBUG quick_setup running python command "timegrid" 2010-10-07 21:07:56,363 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2010-10-07 21:07:56,372 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,373 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/vector 2010-10-07 21:07:56,373 DEBUG quick_setup running python command "as_vect" 2010-10-07 21:07:56,374 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-10-07 21:07:56,398 DEBUG quick_asect done making vector matfiles 2010-10-07 21:07:56,399 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,399 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/contour 2010-10-07 21:07:56,399 DEBUG quick_setup running python command "timegrid" 2010-10-07 21:07:56,400 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2010-10-07 21:07:56,409 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,410 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/contour 2010-10-07 21:07:56,410 DEBUG quick_setup running python command "as_cont" 2010-10-07 21:07:56,411 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-10-07 21:07:56,442 DEBUG quick_setup starting in /home/data/lucid_test10/proc/os75nb 2010-10-07 21:07:56,443 DEBUG quick_setup executing commands from /home/data/lucid_test10/proc/os75nb/contour 2010-10-07 21:07:56,443 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_at 2010-10-07 21:07:56,506 DEBUG quick_asect done running getmat with "allbins" 2010-10-07 21:07:56,562 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-10-07 21:07:56,563 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-10-07 21:07:56,563 DEBUG root matfile is contour/contour_uv.mat 2010-10-07 21:07:56,565 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-10-07 21:07:56,565 DEBUG root matfile is vector/vector_uv.mat 2010-10-07 21:07:56,566 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-10-07 21:07:56,566 DEBUG root matfile is contour/contour_xy.mat 2010-10-07 21:07:56,567 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-10-07 21:07:56,567 DEBUG root matfile is vector/vector_xy.mat 2010-10-07 21:07:56,568 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-10-07 21:07:56,568 DEBUG root about to copy file edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-07 21:07:56,569 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-07 21:07:56,569 INFO root Ending quick_adcp.py 2010-10-07 21:07:56,673 DEBUG quick_setup killed matlab engine