/******************************************************************************

  FILE:  smoothr.cnt

         This control file is used with the smoothr program
         to interpolate and smooth the absolute reference layer velocities
         (derived from the refabs program) to the profile times.
         It uses a Blackman window function of width T:
         w(t) = 0.42 - 0.5 * cos(2 * pi *t / T) + 0.08 * cos(4 * pi * t / T).
         It also calculates profile positions from the smoothed velocities.

INPUT:   1) text file of absolute ref layer velocities averaged over 
            fix intervals, with gap information (output of refabs)
         2) text file of time and ship velocity relative to reference 
            layer for each profile (output of adcpsect, navigation 
            option: the same .nav file that was used as input to
            refabs)

OUTPUT:  1) text file of absolute ref layer velocity (u & v), absolute 
            ship velocity, and positions interpolated and smoothed 
            to the profile times
         2) binary file (.bin) with same information as text file 
            for use with Matlab plotting routine 'callrefp.m'
         3) a log file (.log) with lots of information about the
            fixes and the navigation calculation


-------------------------------------------------------------------------------
  CONTROL FILE STRUCTURE:

  reference_file:    < input file of relative ref. layer velocities (.nav) >
  refabs_output:     < input file of raw absolute ref. layer vel. from refabs >
  output:            < text output filename >
  filter_hwidth=     < half-width of filter in decimal days >
  min_filter_fraction=  < how much of filter mass must have data: 0 to 1 >
  max_gap_ratio=     < parameter limiting gap acceptance; suggest 0.05 >
  max_gap_distance=  < distance uncertainty threshold for position calc. (m) >
  max_gap_time=      < gap time threshold for starting a segment (seconds) >
  ensemble_time=     < no. of seconds in ensemble >
  max_speed=         < max. speed of ship in question (m/s) >
  min_speed=         < expected short-term speed variability on or off station >
  iterations=        < no. of times to optimize the positions: 3-5 for accuracy >
  fix_to_dr_limit=   < threshold for printing fix times and deviations (deg) >
-----------------------------------------------------------------------------*/

  reference_file:       ademo.nav
  refabs_output:        ademo.ref
  output:               ademo.sm
  filter_hwidth=        0.0208333     /* half an hour */
  min_filter_fraction=  0.5
  max_gap_ratio=        0.05
  max_gap_distance=     50            /* meters */
  max_gap_time=         30            /* seconds */
  ensemble_time=        300           /* 5-minute ensemble */
  max_speed=            5.0
  min_speed=            1.0
  iterations=           5
  fix_to_dr_limit=      0.00050

/*****************************************************************************/