2009-11-03 09:52:18,067 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype nb --cfgbase at1554b --cruisename at1554b --instclass os --instname os75 --dbname a_at --datatype uhdas --datadir /home/data/at1554b/raw/os75 --cfgpath /home/data/at1554b/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst phins --use_topo4edit ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 2 --quiet --auto 2009-11-03 09:52:18,070 DEBUG quick_adcp progdir = /home/currents/programs 2009-11-03 09:52:18,070 DEBUG quick_adcp binos = lnx 2009-11-03 09:52:18,070 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-11-03 09:52:18,070 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-11-03 09:52:18,071 DEBUG quick_setup processing data logged with uhdas: 2009-11-03 09:52:18,071 DEBUG quick_setup datatype is uhdas 2009-11-03 09:52:18,071 DEBUG quick_setup pingtype is nb 2009-11-03 09:52:18,071 DEBUG quick_setup instclass is os 2009-11-03 09:52:18,071 DEBUG quick_setup no post-processing heading correction will be used 2009-11-03 09:52:18,072 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-11-03 09:52:18,072 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'at1554b',... 'cfgpath' , '/home/data/at1554b/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-11-03 09:52:18,073 DEBUG quick_setup ------- starting Matlab engine ------- 2009-11-03 09:52:18,073 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-11-03 09:52:18,076 DEBUG call_matlab starting to wait for initial prompt 2009-11-03 09:52:19,144 DEBUG call_matlab received initial prompt 2009-11-03 09:52:19,388 DEBUG quick_adcp cwd is /home/data/at1554b/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-11-03 09:52:19,388 DEBUG quick_adcp original fix file is a_at.gps 2009-11-03 09:52:19,389 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-11-03 09:52:19,389 DEBUG quick_asect extracting matlab files for os75, nb pings 2009-11-03 09:52:19,643 DEBUG quick_subs found 138 files using wildcard expansion from "/home/data/at1554b/raw/os75/*.raw" 2009-11-03 09:52:19,643 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/at1554b/raw/os75/at2009_294_85935.raw /home/data/at1554b/raw/os75/at2009_295_00000.raw /home/data/at1554b/raw/os75/at2009_295_07200.raw /home/data/at1554b/raw/os75/at2009_295_14400.raw /home/data/at1554b/raw/os75/at2009_295_21600.raw /home/data/at1554b/raw/os75/at2009_295_28800.raw /home/data/at1554b/raw/os75/at2009_295_36000.raw /home/data/at1554b/raw/os75/at2009_295_43200.raw /home/data/at1554b/raw/os75/at2009_295_50400.raw /home/data/at1554b/raw/os75/at2009_295_57600.raw /home/data/at1554b/raw/os75/at2009_295_64800.raw /home/data/at1554b/raw/os75/at2009_295_72000.raw /home/data/at1554b/raw/os75/at2009_295_79200.raw /home/data/at1554b/raw/os75/at2009_296_00000.raw /home/data/at1554b/raw/os75/at2009_296_07200.raw /home/data/at1554b/raw/os75/at2009_296_14400.raw /home/data/at1554b/raw/os75/at2009_296_21600.raw /home/data/at1554b/raw/os75/at2009_296_28800.raw /home/data/at1554b/raw/os75/at2009_296_36000.raw /home/data/at1554b/raw/os75/at2009_296_43200.raw /home/data/at1554b/raw/os75/at2009_296_50400.raw /home/data/at1554b/raw/os75/at2009_296_57600.raw /home/data/at1554b/raw/os75/at2009_296_64800.raw /home/data/at1554b/raw/os75/at2009_296_72000.raw /home/data/at1554b/raw/os75/at2009_296_79200.raw /home/data/at1554b/raw/os75/at2009_297_00000.raw /home/data/at1554b/raw/os75/at2009_297_07200.raw /home/data/at1554b/raw/os75/at2009_297_14400.raw /home/data/at1554b/raw/os75/at2009_297_21600.raw /home/data/at1554b/raw/os75/at2009_297_28800.raw /home/data/at1554b/raw/os75/at2009_297_36000.raw /home/data/at1554b/raw/os75/at2009_297_43200.raw /home/data/at1554b/raw/os75/at2009_297_50400.raw /home/data/at1554b/raw/os75/at2009_297_57600.raw /home/data/at1554b/raw/os75/at2009_297_64800.raw /home/data/at1554b/raw/os75/at2009_297_72000.raw /home/data/at1554b/raw/os75/at2009_297_79200.raw /home/data/at1554b/raw/os75/at2009_298_00000.raw /home/data/at1554b/raw/os75/at2009_298_07200.raw /home/data/at1554b/raw/os75/at2009_298_14400.raw /home/data/at1554b/raw/os75/at2009_298_21600.raw /home/data/at1554b/raw/os75/at2009_298_28800.raw /home/data/at1554b/raw/os75/at2009_298_36000.raw /home/data/at1554b/raw/os75/at2009_298_43200.raw /home/data/at1554b/raw/os75/at2009_298_50400.raw /home/data/at1554b/raw/os75/at2009_298_57600.raw /home/data/at1554b/raw/os75/at2009_298_64800.raw /home/data/at1554b/raw/os75/at2009_298_72000.raw /home/data/at1554b/raw/os75/at2009_298_79200.raw /home/data/at1554b/raw/os75/at2009_299_00000.raw /home/data/at1554b/raw/os75/at2009_299_07200.raw /home/data/at1554b/raw/os75/at2009_299_14400.raw /home/data/at1554b/raw/os75/at2009_299_21600.raw /home/data/at1554b/raw/os75/at2009_299_28800.raw /home/data/at1554b/raw/os75/at2009_299_36000.raw /home/data/at1554b/raw/os75/at2009_299_43200.raw /home/data/at1554b/raw/os75/at2009_299_50400.raw /home/data/at1554b/raw/os75/at2009_299_57600.raw /home/data/at1554b/raw/os75/at2009_299_64800.raw /home/data/at1554b/raw/os75/at2009_299_72000.raw /home/data/at1554b/raw/os75/at2009_299_79200.raw /home/data/at1554b/raw/os75/at2009_300_00000.raw /home/data/at1554b/raw/os75/at2009_300_07200.raw /home/data/at1554b/raw/os75/at2009_300_14400.raw /home/data/at1554b/raw/os75/at2009_300_21600.raw /home/data/at1554b/raw/os75/at2009_300_28800.raw /home/data/at1554b/raw/os75/at2009_300_36000.raw /home/data/at1554b/raw/os75/at2009_300_43200.raw /home/data/at1554b/raw/os75/at2009_300_50400.raw /home/data/at1554b/raw/os75/at2009_300_57600.raw /home/data/at1554b/raw/os75/at2009_300_64800.raw /home/data/at1554b/raw/os75/at2009_300_72000.raw /home/data/at1554b/raw/os75/at2009_300_79200.raw /home/data/at1554b/raw/os75/at2009_301_00000.raw /home/data/at1554b/raw/os75/at2009_301_07200.raw /home/data/at1554b/raw/os75/at2009_301_14400.raw /home/data/at1554b/raw/os75/at2009_301_21600.raw /home/data/at1554b/raw/os75/at2009_301_28800.raw /home/data/at1554b/raw/os75/at2009_301_36000.raw /home/data/at1554b/raw/os75/at2009_301_43200.raw /home/data/at1554b/raw/os75/at2009_301_50400.raw /home/data/at1554b/raw/os75/at2009_301_57600.raw /home/data/at1554b/raw/os75/at2009_301_64800.raw /home/data/at1554b/raw/os75/at2009_301_72000.raw /home/data/at1554b/raw/os75/at2009_301_79200.raw /home/data/at1554b/raw/os75/at2009_302_00000.raw /home/data/at1554b/raw/os75/at2009_302_07200.raw /home/data/at1554b/raw/os75/at2009_302_14400.raw /home/data/at1554b/raw/os75/at2009_302_21600.raw /home/data/at1554b/raw/os75/at2009_302_28800.raw /home/data/at1554b/raw/os75/at2009_302_36000.raw /home/data/at1554b/raw/os75/at2009_302_43200.raw /home/data/at1554b/raw/os75/at2009_302_50400.raw /home/data/at1554b/raw/os75/at2009_302_57600.raw /home/data/at1554b/raw/os75/at2009_302_64800.raw /home/data/at1554b/raw/os75/at2009_302_72000.raw /home/data/at1554b/raw/os75/at2009_302_79200.raw /home/data/at1554b/raw/os75/at2009_303_00000.raw /home/data/at1554b/raw/os75/at2009_303_07200.raw /home/data/at1554b/raw/os75/at2009_303_14400.raw /home/data/at1554b/raw/os75/at2009_303_21600.raw /home/data/at1554b/raw/os75/at2009_303_28800.raw /home/data/at1554b/raw/os75/at2009_303_36000.raw /home/data/at1554b/raw/os75/at2009_303_43200.raw /home/data/at1554b/raw/os75/at2009_303_50400.raw /home/data/at1554b/raw/os75/at2009_303_57600.raw /home/data/at1554b/raw/os75/at2009_303_64800.raw /home/data/at1554b/raw/os75/at2009_303_72000.raw /home/data/at1554b/raw/os75/at2009_303_79200.raw /home/data/at1554b/raw/os75/at2009_304_00000.raw /home/data/at1554b/raw/os75/at2009_304_07200.raw /home/data/at1554b/raw/os75/at2009_304_14400.raw /home/data/at1554b/raw/os75/at2009_304_21600.raw /home/data/at1554b/raw/os75/at2009_304_28800.raw /home/data/at1554b/raw/os75/at2009_304_36000.raw /home/data/at1554b/raw/os75/at2009_304_43200.raw /home/data/at1554b/raw/os75/at2009_304_50400.raw /home/data/at1554b/raw/os75/at2009_304_57600.raw /home/data/at1554b/raw/os75/at2009_304_64800.raw /home/data/at1554b/raw/os75/at2009_304_72000.raw /home/data/at1554b/raw/os75/at2009_304_79200.raw /home/data/at1554b/raw/os75/at2009_305_00000.raw /home/data/at1554b/raw/os75/at2009_305_07200.raw /home/data/at1554b/raw/os75/at2009_305_14400.raw /home/data/at1554b/raw/os75/at2009_305_21600.raw /home/data/at1554b/raw/os75/at2009_305_28800.raw /home/data/at1554b/raw/os75/at2009_305_36000.raw /home/data/at1554b/raw/os75/at2009_305_43200.raw /home/data/at1554b/raw/os75/at2009_305_50400.raw /home/data/at1554b/raw/os75/at2009_305_57600.raw /home/data/at1554b/raw/os75/at2009_305_64800.raw /home/data/at1554b/raw/os75/at2009_305_72000.raw /home/data/at1554b/raw/os75/at2009_305_79200.raw /home/data/at1554b/raw/os75/at2009_306_00000.raw /home/data/at1554b/raw/os75/at2009_306_07200.raw /home/data/at1554b/raw/os75/at2009_306_14400.raw /home/data/at1554b/raw/os75/at2009_306_21600.raw /home/data/at1554b/raw/os75/at2009_306_28800.raw 2009-11-03 09:52:19,644 DEBUG quick_adcp LASTFILES invoked. using only 138 files from end of filelist 2009-11-03 09:52:19,644 DEBUG quick_adcp using delblks = 1 2009-11-03 09:52:19,644 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/at1554b/raw/os75/at2009_294_85935.raw /home/data/at1554b/raw/os75/at2009_295_00000.raw /home/data/at1554b/raw/os75/at2009_295_07200.raw /home/data/at1554b/raw/os75/at2009_295_14400.raw /home/data/at1554b/raw/os75/at2009_295_21600.raw /home/data/at1554b/raw/os75/at2009_295_28800.raw /home/data/at1554b/raw/os75/at2009_295_36000.raw /home/data/at1554b/raw/os75/at2009_295_43200.raw /home/data/at1554b/raw/os75/at2009_295_50400.raw /home/data/at1554b/raw/os75/at2009_295_57600.raw /home/data/at1554b/raw/os75/at2009_295_64800.raw /home/data/at1554b/raw/os75/at2009_295_72000.raw /home/data/at1554b/raw/os75/at2009_295_79200.raw /home/data/at1554b/raw/os75/at2009_296_00000.raw /home/data/at1554b/raw/os75/at2009_296_07200.raw /home/data/at1554b/raw/os75/at2009_296_14400.raw /home/data/at1554b/raw/os75/at2009_296_21600.raw /home/data/at1554b/raw/os75/at2009_296_28800.raw /home/data/at1554b/raw/os75/at2009_296_36000.raw /home/data/at1554b/raw/os75/at2009_296_43200.raw /home/data/at1554b/raw/os75/at2009_296_50400.raw /home/data/at1554b/raw/os75/at2009_296_57600.raw /home/data/at1554b/raw/os75/at2009_296_64800.raw /home/data/at1554b/raw/os75/at2009_296_72000.raw /home/data/at1554b/raw/os75/at2009_296_79200.raw /home/data/at1554b/raw/os75/at2009_297_00000.raw /home/data/at1554b/raw/os75/at2009_297_07200.raw /home/data/at1554b/raw/os75/at2009_297_14400.raw /home/data/at1554b/raw/os75/at2009_297_21600.raw /home/data/at1554b/raw/os75/at2009_297_28800.raw /home/data/at1554b/raw/os75/at2009_297_36000.raw /home/data/at1554b/raw/os75/at2009_297_43200.raw /home/data/at1554b/raw/os75/at2009_297_50400.raw /home/data/at1554b/raw/os75/at2009_297_57600.raw /home/data/at1554b/raw/os75/at2009_297_64800.raw /home/data/at1554b/raw/os75/at2009_297_72000.raw /home/data/at1554b/raw/os75/at2009_297_79200.raw /home/data/at1554b/raw/os75/at2009_298_00000.raw /home/data/at1554b/raw/os75/at2009_298_07200.raw /home/data/at1554b/raw/os75/at2009_298_14400.raw /home/data/at1554b/raw/os75/at2009_298_21600.raw /home/data/at1554b/raw/os75/at2009_298_28800.raw /home/data/at1554b/raw/os75/at2009_298_36000.raw /home/data/at1554b/raw/os75/at2009_298_43200.raw /home/data/at1554b/raw/os75/at2009_298_50400.raw /home/data/at1554b/raw/os75/at2009_298_57600.raw /home/data/at1554b/raw/os75/at2009_298_64800.raw /home/data/at1554b/raw/os75/at2009_298_72000.raw /home/data/at1554b/raw/os75/at2009_298_79200.raw /home/data/at1554b/raw/os75/at2009_299_00000.raw /home/data/at1554b/raw/os75/at2009_299_07200.raw /home/data/at1554b/raw/os75/at2009_299_14400.raw /home/data/at1554b/raw/os75/at2009_299_21600.raw /home/data/at1554b/raw/os75/at2009_299_28800.raw /home/data/at1554b/raw/os75/at2009_299_36000.raw /home/data/at1554b/raw/os75/at2009_299_43200.raw /home/data/at1554b/raw/os75/at2009_299_50400.raw /home/data/at1554b/raw/os75/at2009_299_57600.raw /home/data/at1554b/raw/os75/at2009_299_64800.raw /home/data/at1554b/raw/os75/at2009_299_72000.raw /home/data/at1554b/raw/os75/at2009_299_79200.raw /home/data/at1554b/raw/os75/at2009_300_00000.raw /home/data/at1554b/raw/os75/at2009_300_07200.raw /home/data/at1554b/raw/os75/at2009_300_14400.raw /home/data/at1554b/raw/os75/at2009_300_21600.raw /home/data/at1554b/raw/os75/at2009_300_28800.raw /home/data/at1554b/raw/os75/at2009_300_36000.raw /home/data/at1554b/raw/os75/at2009_300_43200.raw /home/data/at1554b/raw/os75/at2009_300_50400.raw /home/data/at1554b/raw/os75/at2009_300_57600.raw /home/data/at1554b/raw/os75/at2009_300_64800.raw /home/data/at1554b/raw/os75/at2009_300_72000.raw /home/data/at1554b/raw/os75/at2009_300_79200.raw /home/data/at1554b/raw/os75/at2009_301_00000.raw /home/data/at1554b/raw/os75/at2009_301_07200.raw /home/data/at1554b/raw/os75/at2009_301_14400.raw /home/data/at1554b/raw/os75/at2009_301_21600.raw /home/data/at1554b/raw/os75/at2009_301_28800.raw /home/data/at1554b/raw/os75/at2009_301_36000.raw /home/data/at1554b/raw/os75/at2009_301_43200.raw /home/data/at1554b/raw/os75/at2009_301_50400.raw /home/data/at1554b/raw/os75/at2009_301_57600.raw /home/data/at1554b/raw/os75/at2009_301_64800.raw /home/data/at1554b/raw/os75/at2009_301_72000.raw /home/data/at1554b/raw/os75/at2009_301_79200.raw /home/data/at1554b/raw/os75/at2009_302_00000.raw /home/data/at1554b/raw/os75/at2009_302_07200.raw /home/data/at1554b/raw/os75/at2009_302_14400.raw /home/data/at1554b/raw/os75/at2009_302_21600.raw /home/data/at1554b/raw/os75/at2009_302_28800.raw /home/data/at1554b/raw/os75/at2009_302_36000.raw /home/data/at1554b/raw/os75/at2009_302_43200.raw /home/data/at1554b/raw/os75/at2009_302_50400.raw /home/data/at1554b/raw/os75/at2009_302_57600.raw /home/data/at1554b/raw/os75/at2009_302_64800.raw /home/data/at1554b/raw/os75/at2009_302_72000.raw /home/data/at1554b/raw/os75/at2009_302_79200.raw /home/data/at1554b/raw/os75/at2009_303_00000.raw /home/data/at1554b/raw/os75/at2009_303_07200.raw /home/data/at1554b/raw/os75/at2009_303_14400.raw /home/data/at1554b/raw/os75/at2009_303_21600.raw /home/data/at1554b/raw/os75/at2009_303_28800.raw /home/data/at1554b/raw/os75/at2009_303_36000.raw /home/data/at1554b/raw/os75/at2009_303_43200.raw /home/data/at1554b/raw/os75/at2009_303_50400.raw /home/data/at1554b/raw/os75/at2009_303_57600.raw /home/data/at1554b/raw/os75/at2009_303_64800.raw /home/data/at1554b/raw/os75/at2009_303_72000.raw /home/data/at1554b/raw/os75/at2009_303_79200.raw /home/data/at1554b/raw/os75/at2009_304_00000.raw /home/data/at1554b/raw/os75/at2009_304_07200.raw /home/data/at1554b/raw/os75/at2009_304_14400.raw /home/data/at1554b/raw/os75/at2009_304_21600.raw /home/data/at1554b/raw/os75/at2009_304_28800.raw /home/data/at1554b/raw/os75/at2009_304_36000.raw /home/data/at1554b/raw/os75/at2009_304_43200.raw /home/data/at1554b/raw/os75/at2009_304_50400.raw /home/data/at1554b/raw/os75/at2009_304_57600.raw /home/data/at1554b/raw/os75/at2009_304_64800.raw /home/data/at1554b/raw/os75/at2009_304_72000.raw /home/data/at1554b/raw/os75/at2009_304_79200.raw /home/data/at1554b/raw/os75/at2009_305_00000.raw /home/data/at1554b/raw/os75/at2009_305_07200.raw /home/data/at1554b/raw/os75/at2009_305_14400.raw /home/data/at1554b/raw/os75/at2009_305_21600.raw /home/data/at1554b/raw/os75/at2009_305_28800.raw /home/data/at1554b/raw/os75/at2009_305_36000.raw /home/data/at1554b/raw/os75/at2009_305_43200.raw /home/data/at1554b/raw/os75/at2009_305_50400.raw /home/data/at1554b/raw/os75/at2009_305_57600.raw /home/data/at1554b/raw/os75/at2009_305_64800.raw /home/data/at1554b/raw/os75/at2009_305_72000.raw /home/data/at1554b/raw/os75/at2009_305_79200.raw /home/data/at1554b/raw/os75/at2009_306_00000.raw /home/data/at1554b/raw/os75/at2009_306_07200.raw /home/data/at1554b/raw/os75/at2009_306_14400.raw /home/data/at1554b/raw/os75/at2009_306_21600.raw /home/data/at1554b/raw/os75/at2009_306_28800.raw 2009-11-03 09:52:19,647 DEBUG quick_adcp Tue Nov 3 09:52:19 2009 running quick_adcp.py as follows: --cntfile /home/data/at1554b/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_at cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [75, 125, 175, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850] firstdepth 45 gridnum 45 increment 20 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_at allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase at1554b cfgpath /home/data/at1554b/proc/os75nb/config cntfile /home/data/at1554b/proc/os75nb/os75nb_qpy.cnt commands None cruisename at1554b data_def vmadcp.def datadir /home/data/at1554b/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False filelist ['/home/data/at1554b/raw/os75/at2009_294_85935.raw', '/home/data/at1554b/raw/os75/at2009_295_00000.raw', '/home/data/at1554b/raw/os75/at2009_295_07200.raw', '/home/data/at1554b/raw/os75/at2009_295_14400.raw', '/home/data/at1554b/raw/os75/at2009_295_21600.raw', '/home/data/at1554b/raw/os75/at2009_295_28800.raw', '/home/data/at1554b/raw/os75/at2009_295_36000.raw', '/home/data/at1554b/raw/os75/at2009_295_43200.raw', 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'/home/data/at1554b/raw/os75/at2009_305_07200.raw', '/home/data/at1554b/raw/os75/at2009_305_14400.raw', '/home/data/at1554b/raw/os75/at2009_305_21600.raw', '/home/data/at1554b/raw/os75/at2009_305_28800.raw', '/home/data/at1554b/raw/os75/at2009_305_36000.raw', '/home/data/at1554b/raw/os75/at2009_305_43200.raw', '/home/data/at1554b/raw/os75/at2009_305_50400.raw', '/home/data/at1554b/raw/os75/at2009_305_57600.raw', '/home/data/at1554b/raw/os75/at2009_305_64800.raw', '/home/data/at1554b/raw/os75/at2009_305_72000.raw', '/home/data/at1554b/raw/os75/at2009_305_79200.raw', '/home/data/at1554b/raw/os75/at2009_306_00000.raw', '/home/data/at1554b/raw/os75/at2009_306_07200.raw', '/home/data/at1554b/raw/os75/at2009_306_14400.raw', '/home/data/at1554b/raw/os75/at2009_306_21600.raw', '/home/data/at1554b/raw/os75/at2009_306_28800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 45 fixfile a_at.gps hcorr_inst phins head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'at1554b',... 'cfgpath' , '/home/data/at1554b/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_at.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2009 procdir os75nb progdir /home/currents/programs quiet True rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/at1554b/raw/os75/at2009_294_85935.raw', '/home/data/at1554b/raw/os75/at2009_295_00000.raw', '/home/data/at1554b/raw/os75/at2009_295_07200.raw', '/home/data/at1554b/raw/os75/at2009_295_14400.raw', '/home/data/at1554b/raw/os75/at2009_295_21600.raw', '/home/data/at1554b/raw/os75/at2009_295_28800.raw', '/home/data/at1554b/raw/os75/at2009_295_36000.raw', '/home/data/at1554b/raw/os75/at2009_295_43200.raw', 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'/home/data/at1554b/raw/os75/at2009_305_07200.raw', '/home/data/at1554b/raw/os75/at2009_305_14400.raw', '/home/data/at1554b/raw/os75/at2009_305_21600.raw', '/home/data/at1554b/raw/os75/at2009_305_28800.raw', '/home/data/at1554b/raw/os75/at2009_305_36000.raw', '/home/data/at1554b/raw/os75/at2009_305_43200.raw', '/home/data/at1554b/raw/os75/at2009_305_50400.raw', '/home/data/at1554b/raw/os75/at2009_305_57600.raw', '/home/data/at1554b/raw/os75/at2009_305_64800.raw', '/home/data/at1554b/raw/os75/at2009_305_72000.raw', '/home/data/at1554b/raw/os75/at2009_305_79200.raw', '/home/data/at1554b/raw/os75/at2009_306_00000.raw', '/home/data/at1554b/raw/os75/at2009_306_07200.raw', '/home/data/at1554b/raw/os75/at2009_306_14400.raw', '/home/data/at1554b/raw/os75/at2009_306_21600.raw', '/home/data/at1554b/raw/os75/at2009_306_28800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 2 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-11-03 09:52:19,647 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-11-03 09:52:19,647 DEBUG quick_run scanning files for time ranges... 2009-11-03 09:52:19,648 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb/scan 2009-11-03 09:52:19,648 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/scan 2009-11-03 09:52:19,648 DEBUG quick_setup running python command "method" 2009-11-03 09:52:19,648 DEBUG call_matlab --> clear all 2009-11-03 09:52:19,653 DEBUG call_matlab <-- >> 2009-11-03 09:52:19,654 DEBUG call_matlab --> close all 2009-11-03 09:52:19,721 DEBUG call_matlab <-- >> 2009-11-03 09:52:19,721 DEBUG call_matlab --> cd /home/data/at1554b/proc/os75nb/scan 2009-11-03 09:52:19,724 DEBUG call_matlab <-- >> 2009-11-03 09:52:19,724 DEBUG call_matlab --> scan_tmp 2009-11-03 09:52:20,701 DEBUG call_matlab <-- getting config files from "/home/data/at1554b/proc/os75nb/config" running "at1554b_cfg.m" running "at1554b_proc.m" writing scan info to a_at.scn >> 2009-11-03 09:52:20,702 DEBUG quick_run writing time range from a_at.scn to a_at.tr 2009-11-03 09:52:20,702 DEBUG quick_run getting scan time range 2009-11-03 09:52:20,702 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,702 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/scan 2009-11-03 09:52:20,702 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,703 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,704 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,705 DEBUG quick_subs start_end_time 2009/10/22 23:52:18 to 2009/11/03 09:51:40 2009-11-03 09:52:20,706 DEBUG quick_subs dd0: 294.994653 dd1: 306.410880 2009-11-03 09:52:20,706 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,706 DEBUG quick_adcp looking for database with adcpdb/a_at*.blk 2009-11-03 09:52:20,707 DEBUG quick_adcp database found: listing blocks 2009-11-03 09:52:20,708 DEBUG quick_subs removing a_atdir.blk 2009-11-03 09:52:20,708 DEBUG quick_subs about to run mkblkdir 2009-11-03 09:52:20,708 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-11-03 09:52:20,708 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-11-03 09:52:20,720 DEBUG quick_subs database passes. 2009-11-03 09:52:20,721 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-11-03 09:52:20,721 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,721 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,721 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,722 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,722 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,723 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 09:21:20 2009-11-03 09:52:20,723 DEBUG quick_subs dd0: 294.998160 dd1: 306.389815 2009-11-03 09:52:20,723 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-11-03 09:52:20,724 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,724 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,724 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,724 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,725 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,725 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 09:21:20 2009-11-03 09:52:20,725 DEBUG quick_subs dd0: 294.998160 dd1: 306.389815 2009-11-03 09:52:20,726 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-11-03 09:52:20,726 DEBUG quick_adcp origdb_time_range is 2009/10/22 23:57:21 to 2009/11/03 09:21:20 2009-11-03 09:52:20,726 DEBUG quick_adcp (294.998160 to 306.389815) 2009-11-03 09:52:20,727 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-11-03 09:52:20,727 DEBUG quick_subs getting current (remaining after deletion) database times 2009-11-03 09:52:20,727 DEBUG quick_subs ['adcpdb/a_at021.blk', 'adcpdb/a_at011.blk', 'adcpdb/a_at007.blk', 'adcpdb/a_at004.blk', 'adcpdb/a_atdir.blk', 'adcpdb/a_at023.blk', 'adcpdb/a_at018.blk', 'adcpdb/a_at008.blk', 'adcpdb/a_at014.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at022.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at010.blk', 'adcpdb/a_at019.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at005.blk', 'adcpdb/a_at012.blk', 'adcpdb/a_at013.blk', 'adcpdb/a_at020.blk', 'adcpdb/a_at006.blk', 'adcpdb/a_at016.blk', 'adcpdb/a_at017.blk', 'adcpdb/a_at015.blk', 'adcpdb/a_at009.blk'] 2009-11-03 09:52:20,728 DEBUG quick_subs length is 24 2009-11-03 09:52:20,728 DEBUG quick_subs removing a_atdir.blk 2009-11-03 09:52:20,729 DEBUG quick_subs about to run mkblkdir 2009-11-03 09:52:20,729 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-11-03 09:52:20,729 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-11-03 09:52:20,740 DEBUG quick_subs database passes. 2009-11-03 09:52:20,741 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-11-03 09:52:20,741 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,741 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,742 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,742 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,742 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,743 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 09:21:20 2009-11-03 09:52:20,743 DEBUG quick_subs dd0: 294.998160 dd1: 306.389815 2009-11-03 09:52:20,743 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,744 DEBUG quick_subs reading time range 2009-11-03 09:52:20,744 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 09:21:20 2009-11-03 09:52:20,744 DEBUG quick_subs dd0: 294.998160 dd1: 306.389815 2009-11-03 09:52:20,745 INFO quick_subs Tue Nov 3 09:52:20 2009 2009-11-03 09:52:20,745 INFO quick_subs checking database time range by listblk 2009-11-03 09:52:20,745 DEBUG quick_subs removing a_atdir.blk 2009-11-03 09:52:20,746 DEBUG quick_subs about to run mkblkdir 2009-11-03 09:52:20,746 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-11-03 09:52:20,746 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-11-03 09:52:20,757 DEBUG quick_subs database passes. 2009-11-03 09:52:20,758 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-11-03 09:52:20,758 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,758 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,759 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,759 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,760 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,760 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 09:21:20 2009-11-03 09:52:20,760 DEBUG quick_subs dd0: 294.998160 dd1: 306.389815 2009-11-03 09:52:20,762 INFO quick_subs found line /* 0 n= 146 a_at001.blk */ 2009/10/22 23:57:21 to 2009/10/23 12:03:51 2009-11-03 09:52:20,763 INFO quick_subs found line /* 1 n= 146 a_at002.blk */ 2009/10/23 12:08:51 to 2009/10/24 00:15:48 2009-11-03 09:52:20,763 INFO quick_subs found line /* 2 n= 146 a_at003.blk */ 2009/10/24 00:20:49 to 2009/10/24 12:27:31 2009-11-03 09:52:20,763 INFO quick_subs found line /* 3 n= 146 a_at004.blk */ 2009/10/24 12:32:31 to 2009/10/25 00:39:30 2009-11-03 09:52:20,763 INFO quick_subs found line /* 4 n= 146 a_at005.blk */ 2009/10/25 00:44:30 to 2009/10/25 12:51:13 2009-11-03 09:52:20,764 INFO quick_subs found line /* 5 n= 146 a_at006.blk */ 2009/10/25 12:56:14 to 2009/10/26 01:03:13 2009-11-03 09:52:20,764 INFO quick_subs found line /* 6 n= 146 a_at007.blk */ 2009/10/26 01:08:13 to 2009/10/26 13:14:58 2009-11-03 09:52:20,765 INFO quick_subs found line /* 7 n= 146 a_at008.blk */ 2009/10/26 13:19:59 to 2009/10/27 01:27:03 2009-11-03 09:52:20,765 INFO quick_subs found line /* 8 n= 146 a_at009.blk */ 2009/10/27 01:32:04 to 2009/10/27 13:38:41 2009-11-03 09:52:20,765 INFO quick_subs found line /* 9 n= 146 a_at010.blk */ 2009/10/27 13:43:41 to 2009/10/28 01:50:43 2009-11-03 09:52:20,765 INFO quick_subs found line /* 10 n= 146 a_at011.blk */ 2009/10/28 01:55:43 to 2009/10/28 14:02:19 2009-11-03 09:52:20,766 INFO quick_subs found line /* 11 n= 146 a_at012.blk */ 2009/10/28 14:07:20 to 2009/10/29 02:14:14 2009-11-03 09:52:20,766 INFO quick_subs found line /* 12 n= 146 a_at013.blk */ 2009/10/29 02:19:15 to 2009/10/29 14:26:06 2009-11-03 09:52:20,766 INFO quick_subs found line /* 13 n= 146 a_at014.blk */ 2009/10/29 14:31:06 to 2009/10/30 02:38:08 2009-11-03 09:52:20,766 INFO quick_subs found line /* 14 n= 146 a_at015.blk */ 2009/10/30 02:43:09 to 2009/10/30 14:50:09 2009-11-03 09:52:20,767 INFO quick_subs found line /* 15 n= 146 a_at016.blk */ 2009/10/30 14:55:10 to 2009/10/31 03:03:02 2009-11-03 09:52:20,767 INFO quick_subs found line /* 16 n= 146 a_at017.blk */ 2009/10/31 03:08:03 to 2009/10/31 15:14:56 2009-11-03 09:52:20,767 INFO quick_subs found line /* 17 n= 146 a_at018.blk */ 2009/10/31 15:19:57 to 2009/11/01 03:27:09 2009-11-03 09:52:20,767 INFO quick_subs found line /* 18 n= 146 a_at019.blk */ 2009/11/01 03:32:10 to 2009/11/01 15:39:20 2009-11-03 09:52:20,768 INFO quick_subs found line /* 19 n= 146 a_at020.blk */ 2009/11/01 15:44:21 to 2009/11/02 03:51:35 2009-11-03 09:52:20,768 INFO quick_subs found line /* 20 n= 146 a_at021.blk */ 2009/11/02 03:56:36 to 2009/11/02 16:03:41 2009-11-03 09:52:20,768 INFO quick_subs found line /* 21 n= 146 a_at022.blk */ 2009/11/02 16:08:42 to 2009/11/03 04:15:42 2009-11-03 09:52:20,769 INFO quick_subs found line /* 22 n= 61 a_at023.blk */ 2009/11/03 04:20:43 to 2009/11/03 09:21:20 2009-11-03 09:52:20,769 INFO quick_subs scan data start at 294.9946528 2009-11-03 09:52:20,769 INFO quick_subs scan time range: 2009/10/22 23:52:18 to 2009/11/03 09:51:40 2009-11-03 09:52:20,769 INFO quick_subs codasdb ends at 306.3898148 (2009/11/03 09:21:20) 2009-11-03 09:52:20,769 DEBUG quick_subs ... changed dirs, in /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,770 DEBUG quick_subs deleting these files: ['a_at023.blk'] 2009-11-03 09:52:20,771 DEBUG quick_subs getting current (remaining after deletion) database times 2009-11-03 09:52:20,771 DEBUG quick_subs ['adcpdb/a_at021.blk', 'adcpdb/a_at011.blk', 'adcpdb/a_at007.blk', 'adcpdb/a_at004.blk', 'adcpdb/a_at018.blk', 'adcpdb/a_at008.blk', 'adcpdb/a_at014.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at022.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at010.blk', 'adcpdb/a_at019.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at005.blk', 'adcpdb/a_at012.blk', 'adcpdb/a_at013.blk', 'adcpdb/a_at020.blk', 'adcpdb/a_at006.blk', 'adcpdb/a_at016.blk', 'adcpdb/a_at017.blk', 'adcpdb/a_at015.blk', 'adcpdb/a_at009.blk'] 2009-11-03 09:52:20,771 DEBUG quick_subs length is 22 2009-11-03 09:52:20,772 DEBUG quick_subs about to run mkblkdir 2009-11-03 09:52:20,772 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-11-03 09:52:20,772 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-11-03 09:52:20,783 DEBUG quick_subs database passes. 2009-11-03 09:52:20,784 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-11-03 09:52:20,784 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,784 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,785 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,785 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,786 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,786 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 04:15:42 2009-11-03 09:52:20,786 DEBUG quick_subs dd0: 294.998160 dd1: 306.177569 2009-11-03 09:52:20,787 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,787 DEBUG quick_subs reading time range 2009-11-03 09:52:20,787 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 04:15:42 2009-11-03 09:52:20,787 DEBUG quick_subs dd0: 294.998160 dd1: 306.177569 2009-11-03 09:52:20,788 DEBUG quick_subs codas database currently goes from 2009/10/22 23:57:21 to 2009/11/03 04:15:42 2009-11-03 09:52:20,788 DEBUG quick_subs (294.998160 to 306.177569) 2009-11-03 09:52:20,788 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016found existing adcpdb blocks: %s 017found existing adcpdb blocks: %s 018found existing adcpdb blocks: %s 019found existing adcpdb blocks: %s 020found existing adcpdb blocks: %s 021found existing adcpdb blocks: %s 022 2009-11-03 09:52:20,790 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 018 019 020 021 022 023 2009-11-03 09:52:20,790 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022'] 2009-11-03 09:52:20,791 DEBUG quick_subs checked: unloaded blkstrs: ['023'] 2009-11-03 09:52:20,791 DEBUG quick_subs first unloaded file is load/ens_blk023.cmd 2009-11-03 09:52:20,792 DEBUG quick_subs data goes from 2009/11/03 04:20:43 to 2009/11/03 09:51:40 2009-11-03 09:52:20,792 DEBUG quick_subs (306.181053 to 306.410880) 2009-11-03 09:52:20,793 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/at1554b/raw/os75/at2009_294_85935.raw /home/data/at1554b/raw/os75/at2009_295_00000.raw /home/data/at1554b/raw/os75/at2009_295_07200.raw /home/data/at1554b/raw/os75/at2009_295_14400.raw /home/data/at1554b/raw/os75/at2009_295_21600.raw /home/data/at1554b/raw/os75/at2009_295_28800.raw /home/data/at1554b/raw/os75/at2009_295_36000.raw /home/data/at1554b/raw/os75/at2009_295_43200.raw /home/data/at1554b/raw/os75/at2009_295_50400.raw /home/data/at1554b/raw/os75/at2009_295_57600.raw /home/data/at1554b/raw/os75/at2009_295_64800.raw /home/data/at1554b/raw/os75/at2009_295_72000.raw /home/data/at1554b/raw/os75/at2009_295_79200.raw /home/data/at1554b/raw/os75/at2009_296_00000.raw /home/data/at1554b/raw/os75/at2009_296_07200.raw /home/data/at1554b/raw/os75/at2009_296_14400.raw /home/data/at1554b/raw/os75/at2009_296_21600.raw /home/data/at1554b/raw/os75/at2009_296_28800.raw /home/data/at1554b/raw/os75/at2009_296_36000.raw /home/data/at1554b/raw/os75/at2009_296_43200.raw 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/home/data/at1554b/raw/os75/at2009_299_79200.raw /home/data/at1554b/raw/os75/at2009_300_00000.raw /home/data/at1554b/raw/os75/at2009_300_07200.raw /home/data/at1554b/raw/os75/at2009_300_14400.raw /home/data/at1554b/raw/os75/at2009_300_21600.raw /home/data/at1554b/raw/os75/at2009_300_28800.raw /home/data/at1554b/raw/os75/at2009_300_36000.raw /home/data/at1554b/raw/os75/at2009_300_43200.raw /home/data/at1554b/raw/os75/at2009_300_50400.raw /home/data/at1554b/raw/os75/at2009_300_57600.raw /home/data/at1554b/raw/os75/at2009_300_64800.raw /home/data/at1554b/raw/os75/at2009_300_72000.raw /home/data/at1554b/raw/os75/at2009_300_79200.raw /home/data/at1554b/raw/os75/at2009_301_00000.raw /home/data/at1554b/raw/os75/at2009_301_07200.raw /home/data/at1554b/raw/os75/at2009_301_14400.raw /home/data/at1554b/raw/os75/at2009_301_21600.raw /home/data/at1554b/raw/os75/at2009_301_28800.raw /home/data/at1554b/raw/os75/at2009_301_36000.raw /home/data/at1554b/raw/os75/at2009_301_43200.raw 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/home/data/at1554b/raw/os75/at2009_303_21600.raw /home/data/at1554b/raw/os75/at2009_303_28800.raw /home/data/at1554b/raw/os75/at2009_303_36000.raw /home/data/at1554b/raw/os75/at2009_303_43200.raw /home/data/at1554b/raw/os75/at2009_303_50400.raw /home/data/at1554b/raw/os75/at2009_303_57600.raw /home/data/at1554b/raw/os75/at2009_303_64800.raw /home/data/at1554b/raw/os75/at2009_303_72000.raw /home/data/at1554b/raw/os75/at2009_303_79200.raw /home/data/at1554b/raw/os75/at2009_304_00000.raw /home/data/at1554b/raw/os75/at2009_304_07200.raw /home/data/at1554b/raw/os75/at2009_304_14400.raw /home/data/at1554b/raw/os75/at2009_304_21600.raw /home/data/at1554b/raw/os75/at2009_304_28800.raw /home/data/at1554b/raw/os75/at2009_304_36000.raw /home/data/at1554b/raw/os75/at2009_304_43200.raw /home/data/at1554b/raw/os75/at2009_304_50400.raw /home/data/at1554b/raw/os75/at2009_304_57600.raw /home/data/at1554b/raw/os75/at2009_304_64800.raw /home/data/at1554b/raw/os75/at2009_304_72000.raw /home/data/at1554b/raw/os75/at2009_304_79200.raw /home/data/at1554b/raw/os75/at2009_305_00000.raw /home/data/at1554b/raw/os75/at2009_305_07200.raw /home/data/at1554b/raw/os75/at2009_305_14400.raw /home/data/at1554b/raw/os75/at2009_305_21600.raw /home/data/at1554b/raw/os75/at2009_305_28800.raw /home/data/at1554b/raw/os75/at2009_305_36000.raw /home/data/at1554b/raw/os75/at2009_305_43200.raw /home/data/at1554b/raw/os75/at2009_305_50400.raw /home/data/at1554b/raw/os75/at2009_305_57600.raw /home/data/at1554b/raw/os75/at2009_305_64800.raw /home/data/at1554b/raw/os75/at2009_305_72000.raw /home/data/at1554b/raw/os75/at2009_305_79200.raw /home/data/at1554b/raw/os75/at2009_306_00000.raw /home/data/at1554b/raw/os75/at2009_306_07200.raw /home/data/at1554b/raw/os75/at2009_306_14400.raw /home/data/at1554b/raw/os75/at2009_306_21600.raw /home/data/at1554b/raw/os75/at2009_306_28800.raw 2009-11-03 09:52:20,793 INFO quick_run Tue Nov 3 09:52:20 2009 2009-11-03 09:52:20,793 INFO quick_run about to load uhdas files 2009-11-03 09:52:20,793 INFO quick_run /home/data/at1554b/raw/os75/at2009_294_85935.raw /home/data/at1554b/raw/os75/at2009_295_00000.raw /home/data/at1554b/raw/os75/at2009_295_07200.raw /home/data/at1554b/raw/os75/at2009_295_14400.raw /home/data/at1554b/raw/os75/at2009_295_21600.raw /home/data/at1554b/raw/os75/at2009_295_28800.raw /home/data/at1554b/raw/os75/at2009_295_36000.raw /home/data/at1554b/raw/os75/at2009_295_43200.raw /home/data/at1554b/raw/os75/at2009_295_50400.raw /home/data/at1554b/raw/os75/at2009_295_57600.raw /home/data/at1554b/raw/os75/at2009_295_64800.raw /home/data/at1554b/raw/os75/at2009_295_72000.raw /home/data/at1554b/raw/os75/at2009_295_79200.raw /home/data/at1554b/raw/os75/at2009_296_00000.raw /home/data/at1554b/raw/os75/at2009_296_07200.raw /home/data/at1554b/raw/os75/at2009_296_14400.raw /home/data/at1554b/raw/os75/at2009_296_21600.raw /home/data/at1554b/raw/os75/at2009_296_28800.raw /home/data/at1554b/raw/os75/at2009_296_36000.raw /home/data/at1554b/raw/os75/at2009_296_43200.raw /home/data/at1554b/raw/os75/at2009_296_50400.raw /home/data/at1554b/raw/os75/at2009_296_57600.raw /home/data/at1554b/raw/os75/at2009_296_64800.raw /home/data/at1554b/raw/os75/at2009_296_72000.raw /home/data/at1554b/raw/os75/at2009_296_79200.raw /home/data/at1554b/raw/os75/at2009_297_00000.raw /home/data/at1554b/raw/os75/at2009_297_07200.raw /home/data/at1554b/raw/os75/at2009_297_14400.raw /home/data/at1554b/raw/os75/at2009_297_21600.raw /home/data/at1554b/raw/os75/at2009_297_28800.raw /home/data/at1554b/raw/os75/at2009_297_36000.raw /home/data/at1554b/raw/os75/at2009_297_43200.raw /home/data/at1554b/raw/os75/at2009_297_50400.raw /home/data/at1554b/raw/os75/at2009_297_57600.raw /home/data/at1554b/raw/os75/at2009_297_64800.raw /home/data/at1554b/raw/os75/at2009_297_72000.raw /home/data/at1554b/raw/os75/at2009_297_79200.raw /home/data/at1554b/raw/os75/at2009_298_00000.raw /home/data/at1554b/raw/os75/at2009_298_07200.raw 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/home/data/at1554b/raw/os75/at2009_299_72000.raw /home/data/at1554b/raw/os75/at2009_299_79200.raw /home/data/at1554b/raw/os75/at2009_300_00000.raw /home/data/at1554b/raw/os75/at2009_300_07200.raw /home/data/at1554b/raw/os75/at2009_300_14400.raw /home/data/at1554b/raw/os75/at2009_300_21600.raw /home/data/at1554b/raw/os75/at2009_300_28800.raw /home/data/at1554b/raw/os75/at2009_300_36000.raw /home/data/at1554b/raw/os75/at2009_300_43200.raw /home/data/at1554b/raw/os75/at2009_300_50400.raw /home/data/at1554b/raw/os75/at2009_300_57600.raw /home/data/at1554b/raw/os75/at2009_300_64800.raw /home/data/at1554b/raw/os75/at2009_300_72000.raw /home/data/at1554b/raw/os75/at2009_300_79200.raw /home/data/at1554b/raw/os75/at2009_301_00000.raw /home/data/at1554b/raw/os75/at2009_301_07200.raw /home/data/at1554b/raw/os75/at2009_301_14400.raw /home/data/at1554b/raw/os75/at2009_301_21600.raw /home/data/at1554b/raw/os75/at2009_301_28800.raw /home/data/at1554b/raw/os75/at2009_301_36000.raw 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/home/data/at1554b/raw/os75/at2009_303_14400.raw /home/data/at1554b/raw/os75/at2009_303_21600.raw /home/data/at1554b/raw/os75/at2009_303_28800.raw /home/data/at1554b/raw/os75/at2009_303_36000.raw /home/data/at1554b/raw/os75/at2009_303_43200.raw /home/data/at1554b/raw/os75/at2009_303_50400.raw /home/data/at1554b/raw/os75/at2009_303_57600.raw /home/data/at1554b/raw/os75/at2009_303_64800.raw /home/data/at1554b/raw/os75/at2009_303_72000.raw /home/data/at1554b/raw/os75/at2009_303_79200.raw /home/data/at1554b/raw/os75/at2009_304_00000.raw /home/data/at1554b/raw/os75/at2009_304_07200.raw /home/data/at1554b/raw/os75/at2009_304_14400.raw /home/data/at1554b/raw/os75/at2009_304_21600.raw /home/data/at1554b/raw/os75/at2009_304_28800.raw /home/data/at1554b/raw/os75/at2009_304_36000.raw /home/data/at1554b/raw/os75/at2009_304_43200.raw /home/data/at1554b/raw/os75/at2009_304_50400.raw /home/data/at1554b/raw/os75/at2009_304_57600.raw /home/data/at1554b/raw/os75/at2009_304_64800.raw /home/data/at1554b/raw/os75/at2009_304_72000.raw /home/data/at1554b/raw/os75/at2009_304_79200.raw /home/data/at1554b/raw/os75/at2009_305_00000.raw /home/data/at1554b/raw/os75/at2009_305_07200.raw /home/data/at1554b/raw/os75/at2009_305_14400.raw /home/data/at1554b/raw/os75/at2009_305_21600.raw /home/data/at1554b/raw/os75/at2009_305_28800.raw /home/data/at1554b/raw/os75/at2009_305_36000.raw /home/data/at1554b/raw/os75/at2009_305_43200.raw /home/data/at1554b/raw/os75/at2009_305_50400.raw /home/data/at1554b/raw/os75/at2009_305_57600.raw /home/data/at1554b/raw/os75/at2009_305_64800.raw /home/data/at1554b/raw/os75/at2009_305_72000.raw /home/data/at1554b/raw/os75/at2009_305_79200.raw /home/data/at1554b/raw/os75/at2009_306_00000.raw /home/data/at1554b/raw/os75/at2009_306_07200.raw /home/data/at1554b/raw/os75/at2009_306_14400.raw /home/data/at1554b/raw/os75/at2009_306_21600.raw /home/data/at1554b/raw/os75/at2009_306_28800.raw 2009-11-03 09:52:20,794 DEBUG quick_setup load/ldcodas.tmp exists 2009-11-03 09:52:20,794 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,794 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/load 2009-11-03 09:52:20,794 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,795 DEBUG quick_subs in /home/data/at1554b/proc/os75nb/load 2009-11-03 09:52:20,795 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022'] 2009-11-03 09:52:20,796 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023'] 2009-11-03 09:52:20,797 DEBUG quick_subs starttime is 2009/11/03 04:20:43 2009-11-03 09:52:20,797 DEBUG quick_subs RESETTING thisload_time_range 2009-11-03 09:52:20,797 DEBUG quick_subs time range of data to be loaded: 2009/11/03 04:20:43 to 2009/11/03 09:51:40 2009-11-03 09:52:20,798 DEBUG quick_subs data startdd 306.181053 data enddd 306.410880 2009-11-03 09:52:20,798 DEBUG quick_subs about to load from these cmd files ['ens_blk023.cmd'] 2009-11-03 09:52:20,798 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk023.cmd 2009-11-03 09:52:20,798 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-11-03 09:52:20,822 DEBUG quick_subs removing a_atdir.blk 2009-11-03 09:52:20,823 DEBUG quick_subs about to run mkblkdir 2009-11-03 09:52:20,823 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-11-03 09:52:20,823 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-11-03 09:52:20,834 DEBUG quick_subs database passes. 2009-11-03 09:52:20,835 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-11-03 09:52:20,835 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,835 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,836 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,836 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,837 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,837 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 09:51:25 2009-11-03 09:52:20,837 DEBUG quick_subs dd0: 294.998160 dd1: 306.410706 2009-11-03 09:52:20,838 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-11-03 09:52:20,838 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,838 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,838 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,838 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-11-03 09:52:20,839 DEBUG quick_subs extracting time range 2009-11-03 09:52:20,839 DEBUG quick_subs start_end_time 2009/10/22 23:57:21 to 2009/11/03 09:51:25 2009-11-03 09:52:20,840 DEBUG quick_subs dd0: 294.998160 dd1: 306.410706 2009-11-03 09:52:20,840 DEBUG quick_adcp loaded_time_range is 2009/10/22 23:57:21 to 2009/11/03 09:51:25 2009-11-03 09:52:20,840 DEBUG quick_adcp (294.998160 to 306.410706) 2009-11-03 09:52:20,841 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,841 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/adcpdb 2009-11-03 09:52:20,841 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,841 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2009-11-03 09:52:20,842 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-11-03 09:52:20,867 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-11-03 09:52:20,867 DEBUG quick_run executing commands from /home/data/at1554b/proc/os75nb/edit 2009-11-03 09:52:20,867 DEBUG quick_run setup.m exists. not replacing 2009-11-03 09:52:20,868 DEBUG quick_run asetup.m exists. not replacing 2009-11-03 09:52:20,868 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-11-03 09:52:20,868 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-11-03 09:52:20,868 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,868 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/edit 2009-11-03 09:52:20,869 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,869 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2009-11-03 09:52:20,869 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-11-03 09:52:20,924 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-11-03 09:52:20,924 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,924 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:20,925 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,929 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-11-03 09:52:20,930 DEBUG quick_run hcorr_inst is phins 2009-11-03 09:52:20,930 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-11-03 09:52:20,930 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,930 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/rotate 2009-11-03 09:52:20,930 DEBUG quick_setup running python command "method" 2009-11-03 09:52:20,931 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-11-03 09:52:20,931 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-11-03 09:52:20,971 DEBUG quick_run no available heading correction function specified 2009-11-03 09:52:20,972 DEBUG quick_run ------------ step 7: rotate ------------- 2009-11-03 09:52:20,972 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:20,973 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/rotate 2009-11-03 09:52:20,973 DEBUG quick_setup running python command "method" 2009-11-03 09:52:21,028 DEBUG quick_subs last rotated time from log file: 2009/11/03 09:21:37 2009-11-03 09:52:21,029 DEBUG quick_subs time range of currently loaded data: 2009/10/22 23:57:21 to 2009/11/03 09:51:25 2009-11-03 09:52:21,029 DEBUG quick_subs (294.998160 to 306.410706) 2009-11-03 09:52:21,030 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-11-03 09:52:21,031 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:21,031 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/rotate 2009-11-03 09:52:21,031 DEBUG quick_setup running python command "method" 2009-11-03 09:52:21,031 DEBUG quick_subs DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2009/11/03 04:20:43 to 2009/11/03 09:51:40 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-11-03 09:52:21,032 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-11-03 09:52:21,039 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-11-03 09:52:21,040 DEBUG quick_setup nav/as_nav.tmp exists 2009-11-03 09:52:21,040 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:21,040 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:21,040 DEBUG quick_setup running python command "method" 2009-11-03 09:52:21,041 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/10/22 23:57:21 to 2009/11/03 09:51:25 /* the whole time range */ 2009-11-03 09:52:21,041 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-11-03 09:52:21,132 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-11-03 09:52:21,132 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:21,132 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:21,133 DEBUG quick_setup running python command "method" 2009-11-03 09:52:21,133 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-11-03 09:52:21,133 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-11-03 09:52:21,206 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-11-03 09:52:21,206 DEBUG quick_setup nav/smoothr.tmp exists 2009-11-03 09:52:21,207 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:21,207 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:21,207 DEBUG quick_setup running python command "method" 2009-11-03 09:52:21,207 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-11-03 09:52:21,208 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-11-03 09:52:21,569 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:21,569 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:21,570 DEBUG quick_setup running python command "method" 2009-11-03 09:52:21,570 DEBUG call_matlab --> clear all 2009-11-03 09:52:21,581 DEBUG call_matlab <-- >> 2009-11-03 09:52:21,582 DEBUG call_matlab --> close all 2009-11-03 09:52:21,647 DEBUG call_matlab <-- >> 2009-11-03 09:52:21,647 DEBUG call_matlab --> cd /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:21,650 DEBUG call_matlab <-- >> 2009-11-03 09:52:21,650 DEBUG call_matlab --> refsm 2009-11-03 09:52:24,056 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_at opened Searching CODAS database ==> ../adcpdb/a_at for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3279 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-11-03 09:52:24,056 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-11-03 09:52:24,056 DEBUG quick_setup nav/putnav.tmp exists 2009-11-03 09:52:24,057 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:24,057 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:24,057 DEBUG quick_setup running python command "method" 2009-11-03 09:52:24,057 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-11-03 09:52:24,058 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-11-03 09:52:24,171 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-11-03 09:52:24,172 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:24,172 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:24,172 DEBUG quick_setup running python command "method" 2009-11-03 09:52:24,173 DEBUG quick_subs Created callrtmp.m 2009-11-03 09:52:24,174 DEBUG call_matlab --> clear all 2009-11-03 09:52:24,181 DEBUG call_matlab <-- >> 2009-11-03 09:52:24,182 DEBUG call_matlab --> close all 2009-11-03 09:52:24,250 DEBUG call_matlab <-- >> 2009-11-03 09:52:24,250 DEBUG call_matlab --> cd /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:24,253 DEBUG call_matlab <-- >> 2009-11-03 09:52:24,253 DEBUG call_matlab --> callrtmp_tmp 2009-11-03 09:52:26,719 DEBUG call_matlab <-- cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b >> 2009-11-03 09:52:26,720 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-11-03 09:52:26,720 DEBUG quick_run find profile flags ------------ *** ------------- 2009-11-03 09:52:26,720 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:26,720 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/edit 2009-11-03 09:52:26,721 DEBUG quick_setup running python command "method" 2009-11-03 09:52:28,520 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-11-03 09:52:28,520 DEBUG quick_run starting in: /home/data/at1554b/proc/os75nb 2009-11-03 09:52:28,520 DEBUG quick_run executing commands from: edit 2009-11-03 09:52:28,524 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_at abadprf_tmp.asc 2009-11-03 09:52:28,529 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_at abadbin_tmp.asc 2009-11-03 09:52:28,539 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_at 2009-11-03 09:52:28,545 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-11-03 09:52:28,597 DEBUG quick_run changing directories back to /home/data/at1554b/proc/os75nb 2009-11-03 09:52:28,597 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-11-03 09:52:28,598 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-11-03 09:52:28,598 DEBUG quick_setup nav/as_nav.tmp exists 2009-11-03 09:52:28,598 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:28,598 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:28,599 DEBUG quick_setup running python command "method" 2009-11-03 09:52:28,599 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/10/22 23:57:21 to 2009/11/03 09:51:25 /* the whole time range */ 2009-11-03 09:52:28,599 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-11-03 09:52:28,688 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-11-03 09:52:28,689 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:28,689 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:28,689 DEBUG quick_setup running python command "method" 2009-11-03 09:52:28,689 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-11-03 09:52:28,690 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-11-03 09:52:28,762 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-11-03 09:52:28,763 DEBUG quick_setup nav/smoothr.tmp exists 2009-11-03 09:52:28,763 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:28,763 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:28,763 DEBUG quick_setup running python command "method" 2009-11-03 09:52:28,764 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-11-03 09:52:28,764 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-11-03 09:52:29,129 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:29,129 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:29,130 DEBUG quick_setup running python command "method" 2009-11-03 09:52:29,130 DEBUG call_matlab --> clear all 2009-11-03 09:52:29,144 DEBUG call_matlab <-- >> 2009-11-03 09:52:29,144 DEBUG call_matlab --> close all 2009-11-03 09:52:29,214 DEBUG call_matlab <-- >> 2009-11-03 09:52:29,214 DEBUG call_matlab --> cd /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:29,217 DEBUG call_matlab <-- >> 2009-11-03 09:52:29,217 DEBUG call_matlab --> refsm 2009-11-03 09:52:31,325 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_at opened Searching CODAS database ==> ../adcpdb/a_at for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3279 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-11-03 09:52:31,325 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-11-03 09:52:31,326 DEBUG quick_setup nav/putnav.tmp exists 2009-11-03 09:52:31,326 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:31,326 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:31,326 DEBUG quick_setup running python command "method" 2009-11-03 09:52:31,327 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-11-03 09:52:31,327 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-11-03 09:52:31,438 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-11-03 09:52:31,439 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:31,439 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:31,439 DEBUG quick_setup running python command "method" 2009-11-03 09:52:31,441 DEBUG quick_subs Created callrtmp.m 2009-11-03 09:52:31,441 DEBUG call_matlab --> clear all 2009-11-03 09:52:31,449 DEBUG call_matlab <-- >> 2009-11-03 09:52:31,449 DEBUG call_matlab --> close all 2009-11-03 09:52:31,520 DEBUG call_matlab <-- >> 2009-11-03 09:52:31,520 DEBUG call_matlab --> cd /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:31,523 DEBUG call_matlab <-- >> 2009-11-03 09:52:31,523 DEBUG call_matlab --> callrtmp_tmp 2009-11-03 09:52:34,193 DEBUG call_matlab <-- cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b cruise = at1554b >> 2009-11-03 09:52:34,193 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-11-03 09:52:34,193 DEBUG quick_setup edit/lst_temp.tmp exists 2009-11-03 09:52:34,194 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:34,194 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/edit 2009-11-03 09:52:34,194 DEBUG quick_setup running python command "method" 2009-11-03 09:52:34,194 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at.tem step_size= 1 year_base= 2009 time_ranges: all 2009-11-03 09:52:34,195 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-11-03 09:52:34,246 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:34,247 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/edit 2009-11-03 09:52:34,247 DEBUG quick_setup running python command "method" 2009-11-03 09:52:35,355 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-11-03 09:52:35,355 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-11-03 09:52:35,356 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:35,356 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/botmtrk 2009-11-03 09:52:35,356 DEBUG quick_setup running python command "method" 2009-11-03 09:52:35,356 DEBUG quick_subs dbname: ../../adcpdb/a_at output: a_at.btm step_size= 1 year_base= 2009 time_ranges: 2009/10/22 23:57:21 to 2009/11/03 09:51:25 /* whole time range */ 2009-11-03 09:52:35,357 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-11-03 09:52:35,373 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-11-03 09:52:35,373 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:35,374 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/botmtrk 2009-11-03 09:52:35,374 DEBUG quick_setup running python command "method" 2009-11-03 09:52:35,374 DEBUG quick_subs fix_file_type: simple reference_file: a_at.btm fix_file: ../../nav/a_at.gps output: a_at.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-11-03 09:52:35,374 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-11-03 09:52:35,380 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:35,381 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/botmtrk 2009-11-03 09:52:35,381 DEBUG quick_setup running python command "method" 2009-11-03 09:52:35,381 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_at.ref','a_at.btm',... 'ADCP at1554b step size 1 ', 1); 2009-11-03 09:52:35,577 DEBUG quick_setup nav/as_nav.tmp exists 2009-11-03 09:52:35,577 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:35,577 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/nav 2009-11-03 09:52:35,577 DEBUG quick_setup running python command "method" 2009-11-03 09:52:35,578 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/10/22 23:57:21 to 2009/11/03 09:51:25 /* the whole time range */ 2009-11-03 09:52:35,578 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-11-03 09:52:35,668 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-11-03 09:52:35,669 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:35,669 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/watertrk 2009-11-03 09:52:35,669 DEBUG quick_setup running python command "method" 2009-11-03 09:52:35,670 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_at.gps reference_file: ../../nav/a_at.nav output_file: a_at_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-11-03 09:52:35,670 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-11-03 09:52:35,700 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:35,701 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/cal/watertrk 2009-11-03 09:52:35,701 DEBUG quick_setup running python command "method" 2009-11-03 09:52:35,701 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_at_7.cal', 'ADCP at1554b 7ens') 2009-11-03 09:52:35,702 DEBUG call_matlab --> clear all 2009-11-03 09:52:35,708 DEBUG call_matlab <-- >> 2009-11-03 09:52:35,709 DEBUG call_matlab --> close all 2009-11-03 09:52:35,780 DEBUG call_matlab <-- >> 2009-11-03 09:52:35,781 DEBUG call_matlab --> cd /home/data/at1554b/proc/os75nb/cal/watertrk 2009-11-03 09:52:35,783 DEBUG call_matlab <-- >> 2009-11-03 09:52:35,783 DEBUG call_matlab --> calladcpcal_tmp 2009-11-03 09:52:37,234 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [28x11 double] igood: [28x1 double] >> 2009-11-03 09:52:37,235 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-11-03 09:52:37,235 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:37,235 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/vector 2009-11-03 09:52:37,235 DEBUG quick_setup running python command "method" 2009-11-03 09:52:37,236 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2009-11-03 09:52:37,243 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:37,243 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/vector 2009-11-03 09:52:37,243 DEBUG quick_setup running python command "method" 2009-11-03 09:52:37,244 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-11-03 09:52:37,364 DEBUG quick_asect done making vector matfiles 2009-11-03 09:52:37,365 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:37,365 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/contour 2009-11-03 09:52:37,365 DEBUG quick_setup running python command "method" 2009-11-03 09:52:37,366 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2009-11-03 09:52:37,375 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:37,376 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/contour 2009-11-03 09:52:37,376 DEBUG quick_setup running python command "method" 2009-11-03 09:52:37,377 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-11-03 09:52:37,530 DEBUG quick_setup starting in /home/data/at1554b/proc/os75nb 2009-11-03 09:52:37,530 DEBUG quick_setup executing commands from /home/data/at1554b/proc/os75nb/contour 2009-11-03 09:52:37,530 DEBUG quick_setup about to run getmat -rs -f allbins_ ../adcpdb/a_at 2009-11-03 09:52:38,080 DEBUG quick_asect done running getmat with "allbins" 2009-11-03 09:52:38,081 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2009-11-03 09:52:38,081 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2009-11-03 09:52:38,081 DEBUG root matfile is contour/contour_uv.mat 2009-11-03 09:52:38,085 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2009-11-03 09:52:38,085 DEBUG root matfile is vector/vector_uv.mat 2009-11-03 09:52:38,087 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2009-11-03 09:52:38,087 DEBUG root matfile is contour/contour_xy.mat 2009-11-03 09:52:38,087 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2009-11-03 09:52:38,088 DEBUG root matfile is vector/vector_xy.mat 2009-11-03 09:52:38,088 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2009-11-03 09:52:38,088 DEBUG root about to copy file edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2009-11-03 09:52:38,089 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2009-11-03 09:52:38,090 INFO root Ending quick_adcp.py 2009-11-03 09:52:38,204 DEBUG quick_setup killed matlab engine