2009-07-04 15:03:41,760 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype nb --cfgbase at15_48 --cruisename at15_48 --instclass os --instname os75 --dbname a_at --datatype uhdas --datadir /home/data/at15_48/raw/os75 --cfgpath /home/data/at15_48/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst phins --use_topo4edit ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 2 --quiet --auto 2009-07-04 15:03:41,763 DEBUG quick_adcp progdir = /home/currents/programs 2009-07-04 15:03:41,763 DEBUG quick_adcp binos = lnx 2009-07-04 15:03:41,764 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-07-04 15:03:41,764 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-07-04 15:03:41,764 DEBUG quick_setup processing data logged with uhdas: 2009-07-04 15:03:41,764 DEBUG quick_setup datatype is uhdas 2009-07-04 15:03:41,764 DEBUG quick_setup pingtype is nb 2009-07-04 15:03:41,765 DEBUG quick_setup instclass is os 2009-07-04 15:03:41,765 DEBUG quick_setup no post-processing heading correction will be used 2009-07-04 15:03:41,765 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-07-04 15:03:41,765 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'at15_48',... 'cfgpath' , '/home/data/at15_48/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-07-04 15:03:41,765 DEBUG quick_setup ------- starting Matlab engine ------- 2009-07-04 15:03:41,766 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-07-04 15:03:41,784 DEBUG call_matlab starting to wait for initial prompt 2009-07-04 15:03:43,108 DEBUG call_matlab received initial prompt 2009-07-04 15:03:43,374 DEBUG quick_adcp cwd is /home/data/at15_48/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-07-04 15:03:43,375 DEBUG quick_adcp original fix file is a_at.gps 2009-07-04 15:03:43,375 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-07-04 15:03:43,375 DEBUG quick_asect extracting matlab files for os75, nb pings 2009-07-04 15:03:44,661 DEBUG quick_subs found 36 files using wildcard expansion from "/home/data/at15_48/raw/os75/*.raw" 2009-07-04 15:03:44,661 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/at15_48/raw/os75/at2009_181_63220.raw /home/data/at15_48/raw/os75/at2009_181_64800.raw /home/data/at15_48/raw/os75/at2009_181_72000.raw /home/data/at15_48/raw/os75/at2009_181_79200.raw /home/data/at15_48/raw/os75/at2009_182_00000.raw /home/data/at15_48/raw/os75/at2009_182_07200.raw /home/data/at15_48/raw/os75/at2009_182_14400.raw /home/data/at15_48/raw/os75/at2009_182_21600.raw /home/data/at15_48/raw/os75/at2009_182_28800.raw /home/data/at15_48/raw/os75/at2009_182_36000.raw /home/data/at15_48/raw/os75/at2009_182_43200.raw /home/data/at15_48/raw/os75/at2009_182_50400.raw /home/data/at15_48/raw/os75/at2009_182_57600.raw /home/data/at15_48/raw/os75/at2009_182_64800.raw /home/data/at15_48/raw/os75/at2009_182_72000.raw /home/data/at15_48/raw/os75/at2009_182_79200.raw /home/data/at15_48/raw/os75/at2009_183_00000.raw /home/data/at15_48/raw/os75/at2009_183_07200.raw /home/data/at15_48/raw/os75/at2009_183_14400.raw /home/data/at15_48/raw/os75/at2009_183_21600.raw /home/data/at15_48/raw/os75/at2009_183_28800.raw /home/data/at15_48/raw/os75/at2009_183_36000.raw /home/data/at15_48/raw/os75/at2009_183_43200.raw /home/data/at15_48/raw/os75/at2009_183_50400.raw /home/data/at15_48/raw/os75/at2009_183_57600.raw /home/data/at15_48/raw/os75/at2009_183_64800.raw /home/data/at15_48/raw/os75/at2009_183_72000.raw /home/data/at15_48/raw/os75/at2009_183_79200.raw /home/data/at15_48/raw/os75/at2009_184_00000.raw /home/data/at15_48/raw/os75/at2009_184_07200.raw /home/data/at15_48/raw/os75/at2009_184_14400.raw /home/data/at15_48/raw/os75/at2009_184_21600.raw /home/data/at15_48/raw/os75/at2009_184_28800.raw /home/data/at15_48/raw/os75/at2009_184_36000.raw /home/data/at15_48/raw/os75/at2009_184_43200.raw /home/data/at15_48/raw/os75/at2009_184_50400.raw 2009-07-04 15:03:44,662 DEBUG quick_adcp LASTFILES invoked. using only 36 files from end of filelist 2009-07-04 15:03:44,662 DEBUG quick_adcp using delblks = 1 2009-07-04 15:03:44,662 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/at15_48/raw/os75/at2009_181_63220.raw /home/data/at15_48/raw/os75/at2009_181_64800.raw /home/data/at15_48/raw/os75/at2009_181_72000.raw /home/data/at15_48/raw/os75/at2009_181_79200.raw /home/data/at15_48/raw/os75/at2009_182_00000.raw /home/data/at15_48/raw/os75/at2009_182_07200.raw /home/data/at15_48/raw/os75/at2009_182_14400.raw /home/data/at15_48/raw/os75/at2009_182_21600.raw /home/data/at15_48/raw/os75/at2009_182_28800.raw /home/data/at15_48/raw/os75/at2009_182_36000.raw /home/data/at15_48/raw/os75/at2009_182_43200.raw /home/data/at15_48/raw/os75/at2009_182_50400.raw /home/data/at15_48/raw/os75/at2009_182_57600.raw /home/data/at15_48/raw/os75/at2009_182_64800.raw /home/data/at15_48/raw/os75/at2009_182_72000.raw /home/data/at15_48/raw/os75/at2009_182_79200.raw /home/data/at15_48/raw/os75/at2009_183_00000.raw /home/data/at15_48/raw/os75/at2009_183_07200.raw /home/data/at15_48/raw/os75/at2009_183_14400.raw /home/data/at15_48/raw/os75/at2009_183_21600.raw /home/data/at15_48/raw/os75/at2009_183_28800.raw /home/data/at15_48/raw/os75/at2009_183_36000.raw /home/data/at15_48/raw/os75/at2009_183_43200.raw /home/data/at15_48/raw/os75/at2009_183_50400.raw /home/data/at15_48/raw/os75/at2009_183_57600.raw /home/data/at15_48/raw/os75/at2009_183_64800.raw /home/data/at15_48/raw/os75/at2009_183_72000.raw /home/data/at15_48/raw/os75/at2009_183_79200.raw /home/data/at15_48/raw/os75/at2009_184_00000.raw /home/data/at15_48/raw/os75/at2009_184_07200.raw /home/data/at15_48/raw/os75/at2009_184_14400.raw /home/data/at15_48/raw/os75/at2009_184_21600.raw /home/data/at15_48/raw/os75/at2009_184_28800.raw /home/data/at15_48/raw/os75/at2009_184_36000.raw /home/data/at15_48/raw/os75/at2009_184_43200.raw /home/data/at15_48/raw/os75/at2009_184_50400.raw 2009-07-04 15:03:44,664 DEBUG quick_adcp Sat Jul 4 15:03:44 2009 running quick_adcp.py as follows: --cntfile /home/data/at15_48/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_at cbasename contour dbname a_at dbpath ../adcpdb deeper_boundaries [75, 125, 175, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850] firstdepth 45 gridnum 45 increment 20 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_at allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase at15_48 cfgpath /home/data/at15_48/proc/os75nb/config cntfile /home/data/at15_48/proc/os75nb/os75nb_qpy.cnt commands None cruisename at15_48 data_def vmadcp.def datadir /home/data/at15_48/raw/os75 datafile_glob *.raw datatype uhdas dbname a_at dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False filelist ['/home/data/at15_48/raw/os75/at2009_181_63220.raw', '/home/data/at15_48/raw/os75/at2009_181_64800.raw', '/home/data/at15_48/raw/os75/at2009_181_72000.raw', '/home/data/at15_48/raw/os75/at2009_181_79200.raw', '/home/data/at15_48/raw/os75/at2009_182_00000.raw', '/home/data/at15_48/raw/os75/at2009_182_07200.raw', '/home/data/at15_48/raw/os75/at2009_182_14400.raw', '/home/data/at15_48/raw/os75/at2009_182_21600.raw', '/home/data/at15_48/raw/os75/at2009_182_28800.raw', '/home/data/at15_48/raw/os75/at2009_182_36000.raw', '/home/data/at15_48/raw/os75/at2009_182_43200.raw', '/home/data/at15_48/raw/os75/at2009_182_50400.raw', '/home/data/at15_48/raw/os75/at2009_182_57600.raw', '/home/data/at15_48/raw/os75/at2009_182_64800.raw', '/home/data/at15_48/raw/os75/at2009_182_72000.raw', '/home/data/at15_48/raw/os75/at2009_182_79200.raw', '/home/data/at15_48/raw/os75/at2009_183_00000.raw', '/home/data/at15_48/raw/os75/at2009_183_07200.raw', '/home/data/at15_48/raw/os75/at2009_183_14400.raw', '/home/data/at15_48/raw/os75/at2009_183_21600.raw', '/home/data/at15_48/raw/os75/at2009_183_28800.raw', '/home/data/at15_48/raw/os75/at2009_183_36000.raw', '/home/data/at15_48/raw/os75/at2009_183_43200.raw', '/home/data/at15_48/raw/os75/at2009_183_50400.raw', '/home/data/at15_48/raw/os75/at2009_183_57600.raw', '/home/data/at15_48/raw/os75/at2009_183_64800.raw', '/home/data/at15_48/raw/os75/at2009_183_72000.raw', '/home/data/at15_48/raw/os75/at2009_183_79200.raw', '/home/data/at15_48/raw/os75/at2009_184_00000.raw', '/home/data/at15_48/raw/os75/at2009_184_07200.raw', '/home/data/at15_48/raw/os75/at2009_184_14400.raw', '/home/data/at15_48/raw/os75/at2009_184_21600.raw', '/home/data/at15_48/raw/os75/at2009_184_28800.raw', '/home/data/at15_48/raw/os75/at2009_184_36000.raw', '/home/data/at15_48/raw/os75/at2009_184_43200.raw', '/home/data/at15_48/raw/os75/at2009_184_50400.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 45 fixfile a_at.gps hcorr_inst phins head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'at15_48',... 'cfgpath' , '/home/data/at15_48/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_at.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2009 procdir os75nb progdir /home/currents/programs quiet True rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/at15_48/raw/os75/at2009_181_63220.raw', '/home/data/at15_48/raw/os75/at2009_181_64800.raw', '/home/data/at15_48/raw/os75/at2009_181_72000.raw', '/home/data/at15_48/raw/os75/at2009_181_79200.raw', '/home/data/at15_48/raw/os75/at2009_182_00000.raw', '/home/data/at15_48/raw/os75/at2009_182_07200.raw', '/home/data/at15_48/raw/os75/at2009_182_14400.raw', '/home/data/at15_48/raw/os75/at2009_182_21600.raw', '/home/data/at15_48/raw/os75/at2009_182_28800.raw', '/home/data/at15_48/raw/os75/at2009_182_36000.raw', '/home/data/at15_48/raw/os75/at2009_182_43200.raw', '/home/data/at15_48/raw/os75/at2009_182_50400.raw', '/home/data/at15_48/raw/os75/at2009_182_57600.raw', '/home/data/at15_48/raw/os75/at2009_182_64800.raw', '/home/data/at15_48/raw/os75/at2009_182_72000.raw', '/home/data/at15_48/raw/os75/at2009_182_79200.raw', '/home/data/at15_48/raw/os75/at2009_183_00000.raw', '/home/data/at15_48/raw/os75/at2009_183_07200.raw', '/home/data/at15_48/raw/os75/at2009_183_14400.raw', '/home/data/at15_48/raw/os75/at2009_183_21600.raw', '/home/data/at15_48/raw/os75/at2009_183_28800.raw', '/home/data/at15_48/raw/os75/at2009_183_36000.raw', '/home/data/at15_48/raw/os75/at2009_183_43200.raw', '/home/data/at15_48/raw/os75/at2009_183_50400.raw', '/home/data/at15_48/raw/os75/at2009_183_57600.raw', '/home/data/at15_48/raw/os75/at2009_183_64800.raw', '/home/data/at15_48/raw/os75/at2009_183_72000.raw', '/home/data/at15_48/raw/os75/at2009_183_79200.raw', '/home/data/at15_48/raw/os75/at2009_184_00000.raw', '/home/data/at15_48/raw/os75/at2009_184_07200.raw', '/home/data/at15_48/raw/os75/at2009_184_14400.raw', '/home/data/at15_48/raw/os75/at2009_184_21600.raw', '/home/data/at15_48/raw/os75/at2009_184_28800.raw', '/home/data/at15_48/raw/os75/at2009_184_36000.raw', '/home/data/at15_48/raw/os75/at2009_184_43200.raw', '/home/data/at15_48/raw/os75/at2009_184_50400.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 2 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-07-04 15:03:44,664 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-07-04 15:03:44,664 DEBUG quick_run scanning files for time ranges... 2009-07-04 15:03:44,665 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb/scan 2009-07-04 15:03:44,665 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/scan 2009-07-04 15:03:44,665 DEBUG quick_setup running python command "method" 2009-07-04 15:03:44,665 DEBUG call_matlab --> clear all 2009-07-04 15:03:44,670 DEBUG call_matlab <-- >> 2009-07-04 15:03:44,670 DEBUG call_matlab --> close all 2009-07-04 15:03:44,745 DEBUG call_matlab <-- >> 2009-07-04 15:03:44,745 DEBUG call_matlab --> cd /home/data/at15_48/proc/os75nb/scan 2009-07-04 15:03:44,749 DEBUG call_matlab <-- >> 2009-07-04 15:03:44,749 DEBUG call_matlab --> scan_tmp 2009-07-04 15:03:46,067 DEBUG call_matlab <-- getting config files from "/home/data/at15_48/proc/os75nb/config" running "at15_48_cfg.m" running "at15_48_proc.m" writing scan info to a_at.scn >> 2009-07-04 15:03:46,067 DEBUG quick_run writing time range from a_at.scn to a_at.tr 2009-07-04 15:03:46,068 DEBUG quick_run getting scan time range 2009-07-04 15:03:46,068 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,068 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/scan 2009-07-04 15:03:46,068 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,069 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,070 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,072 DEBUG quick_subs start_end_time 2009/07/01 17:33:43 to 2009/07/04 14:59:50 2009-07-04 15:03:46,072 DEBUG quick_subs dd0: 181.731748 dd1: 184.624884 2009-07-04 15:03:46,072 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,073 DEBUG quick_adcp looking for database with adcpdb/a_at*.blk 2009-07-04 15:03:46,074 DEBUG quick_adcp database found: listing blocks 2009-07-04 15:03:46,074 DEBUG quick_subs removing a_atdir.blk 2009-07-04 15:03:46,075 DEBUG quick_subs about to run mkblkdir 2009-07-04 15:03:46,075 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-04 15:03:46,075 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-04 15:03:46,120 DEBUG quick_subs database passes. 2009-07-04 15:03:46,120 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-07-04 15:03:46,120 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,121 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,122 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,123 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,124 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,125 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 14:29:27 2009-07-04 15:03:46,126 DEBUG quick_subs dd0: 181.735266 dd1: 184.603785 2009-07-04 15:03:46,126 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-07-04 15:03:46,126 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,126 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,128 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,128 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,129 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,129 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 14:29:27 2009-07-04 15:03:46,129 DEBUG quick_subs dd0: 181.735266 dd1: 184.603785 2009-07-04 15:03:46,129 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-07-04 15:03:46,130 DEBUG quick_adcp origdb_time_range is 2009/07/01 17:38:47 to 2009/07/04 14:29:27 2009-07-04 15:03:46,132 DEBUG quick_adcp (181.735266 to 184.603785) 2009-07-04 15:03:46,132 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-07-04 15:03:46,133 DEBUG quick_subs getting current (remaining after deletion) database times 2009-07-04 15:03:46,133 DEBUG quick_subs ['adcpdb/a_at004.blk', 'adcpdb/a_atdir.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at005.blk', 'adcpdb/a_at006.blk'] 2009-07-04 15:03:46,133 DEBUG quick_subs length is 7 2009-07-04 15:03:46,134 DEBUG quick_subs removing a_atdir.blk 2009-07-04 15:03:46,136 DEBUG quick_subs about to run mkblkdir 2009-07-04 15:03:46,136 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-04 15:03:46,137 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-04 15:03:46,170 DEBUG quick_subs database passes. 2009-07-04 15:03:46,171 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-07-04 15:03:46,172 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,172 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,173 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,176 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,176 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,176 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 14:29:27 2009-07-04 15:03:46,177 DEBUG quick_subs dd0: 181.735266 dd1: 184.603785 2009-07-04 15:03:46,177 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,177 DEBUG quick_subs reading time range 2009-07-04 15:03:46,177 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 14:29:27 2009-07-04 15:03:46,180 DEBUG quick_subs dd0: 181.735266 dd1: 184.603785 2009-07-04 15:03:46,180 INFO quick_subs Sat Jul 4 15:03:46 2009 2009-07-04 15:03:46,180 INFO quick_subs checking database time range by listblk 2009-07-04 15:03:46,181 DEBUG quick_subs removing a_atdir.blk 2009-07-04 15:03:46,181 DEBUG quick_subs about to run mkblkdir 2009-07-04 15:03:46,181 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-04 15:03:46,182 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-04 15:03:46,214 DEBUG quick_subs database passes. 2009-07-04 15:03:46,215 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-07-04 15:03:46,216 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,217 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,217 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,218 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,218 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,220 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 14:29:27 2009-07-04 15:03:46,220 DEBUG quick_subs dd0: 181.735266 dd1: 184.603785 2009-07-04 15:03:46,224 INFO quick_subs found line /* 0 n= 146 a_at001.blk */ 2009/07/01 17:38:47 to 2009/07/02 05:52:19 2009-07-04 15:03:46,225 INFO quick_subs found line /* 1 n= 146 a_at002.blk */ 2009/07/02 05:57:21 to 2009/07/02 18:05:59 2009-07-04 15:03:46,225 INFO quick_subs found line /* 2 n= 146 a_at003.blk */ 2009/07/02 18:11:00 to 2009/07/03 06:19:41 2009-07-04 15:03:46,225 INFO quick_subs found line /* 3 n= 146 a_at004.blk */ 2009/07/03 06:24:43 to 2009/07/03 18:33:24 2009-07-04 15:03:46,228 INFO quick_subs found line /* 4 n= 146 a_at005.blk */ 2009/07/03 18:38:25 to 2009/07/04 06:47:03 2009-07-04 15:03:46,228 INFO quick_subs found line /* 5 n= 92 a_at006.blk */ 2009/07/04 06:52:04 to 2009/07/04 14:29:27 2009-07-04 15:03:46,228 INFO quick_subs scan data start at 181.7317477 2009-07-04 15:03:46,228 INFO quick_subs scan time range: 2009/07/01 17:33:43 to 2009/07/04 14:59:50 2009-07-04 15:03:46,229 INFO quick_subs codasdb ends at 184.6037847 (2009/07/04 14:29:27) 2009-07-04 15:03:46,229 DEBUG quick_subs ... changed dirs, in /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,229 DEBUG quick_subs deleting these files: ['a_at006.blk'] 2009-07-04 15:03:46,234 DEBUG quick_subs getting current (remaining after deletion) database times 2009-07-04 15:03:46,234 DEBUG quick_subs ['adcpdb/a_at004.blk', 'adcpdb/a_at002.blk', 'adcpdb/a_at001.blk', 'adcpdb/a_at003.blk', 'adcpdb/a_at005.blk'] 2009-07-04 15:03:46,234 DEBUG quick_subs length is 5 2009-07-04 15:03:46,235 DEBUG quick_subs about to run mkblkdir 2009-07-04 15:03:46,235 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-04 15:03:46,235 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-04 15:03:46,264 DEBUG quick_subs database passes. 2009-07-04 15:03:46,266 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-07-04 15:03:46,267 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,267 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,269 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,269 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,272 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,272 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 06:47:03 2009-07-04 15:03:46,272 DEBUG quick_subs dd0: 181.735266 dd1: 184.282674 2009-07-04 15:03:46,273 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,273 DEBUG quick_subs reading time range 2009-07-04 15:03:46,275 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 06:47:03 2009-07-04 15:03:46,276 DEBUG quick_subs dd0: 181.735266 dd1: 184.282674 2009-07-04 15:03:46,276 DEBUG quick_subs codas database currently goes from 2009/07/01 17:38:47 to 2009/07/04 06:47:03 2009-07-04 15:03:46,276 DEBUG quick_subs (181.735266 to 184.282674) 2009-07-04 15:03:46,277 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005 2009-07-04 15:03:46,280 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 2009-07-04 15:03:46,280 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005'] 2009-07-04 15:03:46,280 DEBUG quick_subs checked: unloaded blkstrs: ['006'] 2009-07-04 15:03:46,280 DEBUG quick_subs first unloaded file is load/ens_blk006.cmd 2009-07-04 15:03:46,326 DEBUG quick_subs data goes from 2009/07/04 06:52:04 to 2009/07/04 14:59:50 2009-07-04 15:03:46,326 DEBUG quick_subs (184.286157 to 184.624884) 2009-07-04 15:03:46,326 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/at15_48/raw/os75/at2009_181_63220.raw /home/data/at15_48/raw/os75/at2009_181_64800.raw /home/data/at15_48/raw/os75/at2009_181_72000.raw /home/data/at15_48/raw/os75/at2009_181_79200.raw /home/data/at15_48/raw/os75/at2009_182_00000.raw /home/data/at15_48/raw/os75/at2009_182_07200.raw /home/data/at15_48/raw/os75/at2009_182_14400.raw /home/data/at15_48/raw/os75/at2009_182_21600.raw /home/data/at15_48/raw/os75/at2009_182_28800.raw /home/data/at15_48/raw/os75/at2009_182_36000.raw /home/data/at15_48/raw/os75/at2009_182_43200.raw /home/data/at15_48/raw/os75/at2009_182_50400.raw /home/data/at15_48/raw/os75/at2009_182_57600.raw /home/data/at15_48/raw/os75/at2009_182_64800.raw /home/data/at15_48/raw/os75/at2009_182_72000.raw /home/data/at15_48/raw/os75/at2009_182_79200.raw /home/data/at15_48/raw/os75/at2009_183_00000.raw /home/data/at15_48/raw/os75/at2009_183_07200.raw /home/data/at15_48/raw/os75/at2009_183_14400.raw /home/data/at15_48/raw/os75/at2009_183_21600.raw /home/data/at15_48/raw/os75/at2009_183_28800.raw /home/data/at15_48/raw/os75/at2009_183_36000.raw /home/data/at15_48/raw/os75/at2009_183_43200.raw /home/data/at15_48/raw/os75/at2009_183_50400.raw /home/data/at15_48/raw/os75/at2009_183_57600.raw /home/data/at15_48/raw/os75/at2009_183_64800.raw /home/data/at15_48/raw/os75/at2009_183_72000.raw /home/data/at15_48/raw/os75/at2009_183_79200.raw /home/data/at15_48/raw/os75/at2009_184_00000.raw /home/data/at15_48/raw/os75/at2009_184_07200.raw /home/data/at15_48/raw/os75/at2009_184_14400.raw /home/data/at15_48/raw/os75/at2009_184_21600.raw /home/data/at15_48/raw/os75/at2009_184_28800.raw /home/data/at15_48/raw/os75/at2009_184_36000.raw /home/data/at15_48/raw/os75/at2009_184_43200.raw /home/data/at15_48/raw/os75/at2009_184_50400.raw 2009-07-04 15:03:46,327 INFO quick_run Sat Jul 4 15:03:46 2009 2009-07-04 15:03:46,327 INFO quick_run about to load uhdas files 2009-07-04 15:03:46,327 INFO quick_run /home/data/at15_48/raw/os75/at2009_181_63220.raw /home/data/at15_48/raw/os75/at2009_181_64800.raw /home/data/at15_48/raw/os75/at2009_181_72000.raw /home/data/at15_48/raw/os75/at2009_181_79200.raw /home/data/at15_48/raw/os75/at2009_182_00000.raw /home/data/at15_48/raw/os75/at2009_182_07200.raw /home/data/at15_48/raw/os75/at2009_182_14400.raw /home/data/at15_48/raw/os75/at2009_182_21600.raw /home/data/at15_48/raw/os75/at2009_182_28800.raw /home/data/at15_48/raw/os75/at2009_182_36000.raw /home/data/at15_48/raw/os75/at2009_182_43200.raw /home/data/at15_48/raw/os75/at2009_182_50400.raw /home/data/at15_48/raw/os75/at2009_182_57600.raw /home/data/at15_48/raw/os75/at2009_182_64800.raw /home/data/at15_48/raw/os75/at2009_182_72000.raw /home/data/at15_48/raw/os75/at2009_182_79200.raw /home/data/at15_48/raw/os75/at2009_183_00000.raw /home/data/at15_48/raw/os75/at2009_183_07200.raw /home/data/at15_48/raw/os75/at2009_183_14400.raw /home/data/at15_48/raw/os75/at2009_183_21600.raw /home/data/at15_48/raw/os75/at2009_183_28800.raw /home/data/at15_48/raw/os75/at2009_183_36000.raw /home/data/at15_48/raw/os75/at2009_183_43200.raw /home/data/at15_48/raw/os75/at2009_183_50400.raw /home/data/at15_48/raw/os75/at2009_183_57600.raw /home/data/at15_48/raw/os75/at2009_183_64800.raw /home/data/at15_48/raw/os75/at2009_183_72000.raw /home/data/at15_48/raw/os75/at2009_183_79200.raw /home/data/at15_48/raw/os75/at2009_184_00000.raw /home/data/at15_48/raw/os75/at2009_184_07200.raw /home/data/at15_48/raw/os75/at2009_184_14400.raw /home/data/at15_48/raw/os75/at2009_184_21600.raw /home/data/at15_48/raw/os75/at2009_184_28800.raw /home/data/at15_48/raw/os75/at2009_184_36000.raw /home/data/at15_48/raw/os75/at2009_184_43200.raw /home/data/at15_48/raw/os75/at2009_184_50400.raw 2009-07-04 15:03:46,327 DEBUG quick_setup load/ldcodas.tmp exists 2009-07-04 15:03:46,328 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,328 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/load 2009-07-04 15:03:46,328 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,328 DEBUG quick_subs in /home/data/at15_48/proc/os75nb/load 2009-07-04 15:03:46,329 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005'] 2009-07-04 15:03:46,329 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006'] 2009-07-04 15:03:46,330 DEBUG quick_subs starttime is 2009/07/04 06:52:04 2009-07-04 15:03:46,330 DEBUG quick_subs RESETTING thisload_time_range 2009-07-04 15:03:46,331 DEBUG quick_subs time range of data to be loaded: 2009/07/04 06:52:04 to 2009/07/04 14:59:50 2009-07-04 15:03:46,331 DEBUG quick_subs data startdd 184.286157 data enddd 184.624884 2009-07-04 15:03:46,331 DEBUG quick_subs about to load from these cmd files ['ens_blk006.cmd'] 2009-07-04 15:03:46,331 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_at DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk006.cmd 2009-07-04 15:03:46,332 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-07-04 15:03:46,418 DEBUG quick_subs removing a_atdir.blk 2009-07-04 15:03:46,419 DEBUG quick_subs about to run mkblkdir 2009-07-04 15:03:46,419 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-04 15:03:46,420 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-04 15:03:46,429 DEBUG quick_subs database passes. 2009-07-04 15:03:46,430 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-07-04 15:03:46,430 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,430 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,431 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,431 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,431 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,432 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 14:59:36 2009-07-04 15:03:46,432 DEBUG quick_subs dd0: 181.735266 dd1: 184.624722 2009-07-04 15:03:46,432 DEBUG quick_subs writing time range from a_at.lst to a_at.tr 2009-07-04 15:03:46,432 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,433 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,433 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,433 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-04 15:03:46,433 DEBUG quick_subs extracting time range 2009-07-04 15:03:46,434 DEBUG quick_subs start_end_time 2009/07/01 17:38:47 to 2009/07/04 14:59:36 2009-07-04 15:03:46,434 DEBUG quick_subs dd0: 181.735266 dd1: 184.624722 2009-07-04 15:03:46,434 DEBUG quick_adcp loaded_time_range is 2009/07/01 17:38:47 to 2009/07/04 14:59:36 2009-07-04 15:03:46,435 DEBUG quick_adcp (181.735266 to 184.624722) 2009-07-04 15:03:46,435 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,435 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/adcpdb 2009-07-04 15:03:46,436 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,436 DEBUG quick_subs dbname: a_at output: a_at.cnh time_ranges: all 2009-07-04 15:03:46,437 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-07-04 15:03:46,476 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-07-04 15:03:46,477 DEBUG quick_run executing commands from /home/data/at15_48/proc/os75nb/edit 2009-07-04 15:03:46,477 DEBUG quick_run setup.m exists. not replacing 2009-07-04 15:03:46,477 DEBUG quick_run asetup.m exists. not replacing 2009-07-04 15:03:46,477 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-07-04 15:03:46,478 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-07-04 15:03:46,478 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,478 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/edit 2009-07-04 15:03:46,478 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,479 DEBUG quick_subs dbname: ../adcpdb/a_at pg_min: 50 set_range_bit time_ranges: all 2009-07-04 15:03:46,479 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-07-04 15:03:46,576 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-07-04 15:03:46,577 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,577 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:46,577 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,678 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-07-04 15:03:46,678 DEBUG quick_run hcorr_inst is phins 2009-07-04 15:03:46,679 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-07-04 15:03:46,679 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,679 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/rotate 2009-07-04 15:03:46,680 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,680 DEBUG quick_subs dbname: ../../adcpdb/a_at output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-07-04 15:03:46,681 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-07-04 15:03:46,698 DEBUG quick_run no available heading correction function specified 2009-07-04 15:03:46,698 DEBUG quick_run ------------ step 7: rotate ------------- 2009-07-04 15:03:46,699 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,699 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/rotate 2009-07-04 15:03:46,699 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,763 DEBUG quick_subs last rotated time from log file: 2009/07/04 14:29:41 2009-07-04 15:03:46,763 DEBUG quick_subs time range of currently loaded data: 2009/07/01 17:38:47 to 2009/07/04 14:59:36 2009-07-04 15:03:46,763 DEBUG quick_subs (181.735266 to 184.624722) 2009-07-04 15:03:46,764 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-07-04 15:03:46,764 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,764 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/rotate 2009-07-04 15:03:46,764 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,765 DEBUG quick_subs DB_NAME: ../../adcpdb/a_at LOG_FILE: rotate.log TIME_RANGE: 2009/07/04 06:52:04 to 2009/07/04 14:59:50 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-07-04 15:03:46,765 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-07-04 15:03:46,798 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-07-04 15:03:46,799 DEBUG quick_setup nav/as_nav.tmp exists 2009-07-04 15:03:46,799 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,799 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:46,800 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,800 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/01 17:38:47 to 2009/07/04 14:59:36 /* the whole time range */ 2009-07-04 15:03:46,800 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-07-04 15:03:46,835 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-07-04 15:03:46,835 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,836 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:46,836 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,836 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-07-04 15:03:46,837 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-07-04 15:03:46,898 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-07-04 15:03:46,899 DEBUG quick_setup nav/smoothr.tmp exists 2009-07-04 15:03:46,899 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:46,899 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:46,899 DEBUG quick_setup running python command "method" 2009-07-04 15:03:46,900 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-07-04 15:03:46,900 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-07-04 15:03:47,052 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:47,053 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:47,053 DEBUG quick_setup running python command "method" 2009-07-04 15:03:47,054 DEBUG call_matlab --> clear all 2009-07-04 15:03:47,066 DEBUG call_matlab <-- >> 2009-07-04 15:03:47,066 DEBUG call_matlab --> close all 2009-07-04 15:03:47,143 DEBUG call_matlab <-- >> 2009-07-04 15:03:47,144 DEBUG call_matlab --> cd /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:47,147 DEBUG call_matlab <-- >> 2009-07-04 15:03:47,147 DEBUG call_matlab --> refsm 2009-07-04 15:03:48,018 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_at opened Searching CODAS database ==> ../adcpdb/a_at for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 828 profiles, 20 bins INFO: database closed loading getmat output >> 2009-07-04 15:03:48,018 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-07-04 15:03:48,018 DEBUG quick_setup nav/putnav.tmp exists 2009-07-04 15:03:48,019 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:48,019 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:48,019 DEBUG quick_setup running python command "method" 2009-07-04 15:03:48,019 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-07-04 15:03:48,020 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-07-04 15:03:48,071 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-07-04 15:03:48,072 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:48,072 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:48,073 DEBUG quick_setup running python command "method" 2009-07-04 15:03:48,094 DEBUG quick_subs Created callrtmp.m 2009-07-04 15:03:48,095 DEBUG call_matlab --> clear all 2009-07-04 15:03:48,102 DEBUG call_matlab <-- >> 2009-07-04 15:03:48,102 DEBUG call_matlab --> close all 2009-07-04 15:03:48,177 DEBUG call_matlab <-- >> 2009-07-04 15:03:48,178 DEBUG call_matlab --> cd /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:48,181 DEBUG call_matlab <-- >> 2009-07-04 15:03:48,181 DEBUG call_matlab --> callrtmp_tmp 2009-07-04 15:03:50,527 DEBUG call_matlab <-- cruise = at15_48 cruise = at15_48 No data available. >> 2009-07-04 15:03:50,527 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-07-04 15:03:50,528 DEBUG quick_run find profile flags ------------ *** ------------- 2009-07-04 15:03:50,528 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:50,528 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/edit 2009-07-04 15:03:50,528 DEBUG quick_setup running python command "method" 2009-07-04 15:03:52,983 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-07-04 15:03:52,983 DEBUG quick_run starting in: /home/data/at15_48/proc/os75nb 2009-07-04 15:03:52,983 DEBUG quick_run executing commands from: edit 2009-07-04 15:03:52,987 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_at abadbin_tmp.asc 2009-07-04 15:03:53,040 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_at 2009-07-04 15:03:53,063 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-07-04 15:03:53,084 DEBUG quick_run changing directories back to /home/data/at15_48/proc/os75nb 2009-07-04 15:03:53,085 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-07-04 15:03:53,085 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-07-04 15:03:53,086 DEBUG quick_setup nav/as_nav.tmp exists 2009-07-04 15:03:53,086 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:53,086 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:53,086 DEBUG quick_setup running python command "method" 2009-07-04 15:03:53,087 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/01 17:38:47 to 2009/07/04 14:59:36 /* the whole time range */ 2009-07-04 15:03:53,087 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-07-04 15:03:53,123 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-07-04 15:03:53,123 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:53,124 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:53,124 DEBUG quick_setup running python command "method" 2009-07-04 15:03:53,124 DEBUG quick_subs fix_file_type: simple reference_file: a_at.nav fix_file: a_at.gps output: a_at.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-07-04 15:03:53,125 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-07-04 15:03:53,150 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-07-04 15:03:53,150 DEBUG quick_setup nav/smoothr.tmp exists 2009-07-04 15:03:53,151 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:53,151 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:53,151 DEBUG quick_setup running python command "method" 2009-07-04 15:03:53,151 DEBUG quick_subs reference_file: a_at.nav refabs_output: a_at.ref output: a_at.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-07-04 15:03:53,152 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-07-04 15:03:53,249 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:53,250 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:53,250 DEBUG quick_setup running python command "method" 2009-07-04 15:03:53,251 DEBUG call_matlab --> clear all 2009-07-04 15:03:53,265 DEBUG call_matlab <-- >> 2009-07-04 15:03:53,265 DEBUG call_matlab --> close all 2009-07-04 15:03:53,343 DEBUG call_matlab <-- >> 2009-07-04 15:03:53,343 DEBUG call_matlab --> cd /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:53,346 DEBUG call_matlab <-- >> 2009-07-04 15:03:53,346 DEBUG call_matlab --> refsm 2009-07-04 15:03:54,002 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_at opened Searching CODAS database ==> ../adcpdb/a_at for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 828 profiles, 20 bins INFO: database closed loading getmat output >> 2009-07-04 15:03:54,003 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-07-04 15:03:54,003 DEBUG quick_setup nav/putnav.tmp exists 2009-07-04 15:03:54,003 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:54,004 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:54,004 DEBUG quick_setup running python command "method" 2009-07-04 15:03:54,004 DEBUG quick_subs dbname: ../adcpdb/a_at position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-07-04 15:03:54,005 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-07-04 15:03:54,040 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-07-04 15:03:54,041 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:54,041 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:54,042 DEBUG quick_setup running python command "method" 2009-07-04 15:03:54,043 DEBUG quick_subs Created callrtmp.m 2009-07-04 15:03:54,043 DEBUG call_matlab --> clear all 2009-07-04 15:03:54,053 DEBUG call_matlab <-- >> 2009-07-04 15:03:54,053 DEBUG call_matlab --> close all 2009-07-04 15:03:54,131 DEBUG call_matlab <-- >> 2009-07-04 15:03:54,131 DEBUG call_matlab --> cd /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:54,134 DEBUG call_matlab <-- >> 2009-07-04 15:03:54,134 DEBUG call_matlab --> callrtmp_tmp 2009-07-04 15:03:55,607 DEBUG call_matlab <-- cruise = at15_48 cruise = at15_48 No data available. >> 2009-07-04 15:03:55,607 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-07-04 15:03:55,608 DEBUG quick_setup edit/lst_temp.tmp exists 2009-07-04 15:03:55,608 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:55,608 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/edit 2009-07-04 15:03:55,609 DEBUG quick_setup running python command "method" 2009-07-04 15:03:55,609 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at.tem step_size= 1 year_base= 2009 time_ranges: all 2009-07-04 15:03:55,609 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-07-04 15:03:55,646 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:55,646 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/edit 2009-07-04 15:03:55,646 DEBUG quick_setup running python command "method" 2009-07-04 15:03:57,202 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-07-04 15:03:57,203 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-07-04 15:03:57,203 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:57,203 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/botmtrk 2009-07-04 15:03:57,204 DEBUG quick_setup running python command "method" 2009-07-04 15:03:57,204 DEBUG quick_subs dbname: ../../adcpdb/a_at output: a_at.btm step_size= 1 year_base= 2009 time_ranges: 2009/07/01 17:38:47 to 2009/07/04 14:59:36 /* whole time range */ 2009-07-04 15:03:57,204 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-07-04 15:03:57,233 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-07-04 15:03:57,233 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:57,234 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/botmtrk 2009-07-04 15:03:57,234 DEBUG quick_setup running python command "method" 2009-07-04 15:03:57,234 DEBUG quick_subs fix_file_type: simple reference_file: a_at.btm fix_file: ../../nav/a_at.gps output: a_at.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-07-04 15:03:57,235 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-07-04 15:03:57,245 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:57,245 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/botmtrk 2009-07-04 15:03:57,246 DEBUG quick_setup running python command "method" 2009-07-04 15:03:57,246 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_at.ref','a_at.btm',... 'ADCP at15_48 step size 1 ', 1); 2009-07-04 15:03:57,480 DEBUG quick_setup nav/as_nav.tmp exists 2009-07-04 15:03:57,480 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:57,481 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/nav 2009-07-04 15:03:57,481 DEBUG quick_setup running python command "method" 2009-07-04 15:03:57,481 DEBUG quick_subs dbname: ../adcpdb/a_at output: a_at step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/01 17:38:47 to 2009/07/04 14:59:36 /* the whole time range */ 2009-07-04 15:03:57,481 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-07-04 15:03:57,516 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-07-04 15:03:57,516 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:57,516 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/watertrk 2009-07-04 15:03:57,516 DEBUG quick_setup running python command "method" 2009-07-04 15:03:57,517 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_at.gps reference_file: ../../nav/a_at.nav output_file: a_at_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-07-04 15:03:57,517 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-07-04 15:03:57,545 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:57,545 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/cal/watertrk 2009-07-04 15:03:57,545 DEBUG quick_setup running python command "method" 2009-07-04 15:03:57,546 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_at_7.cal', 'ADCP at15_48 7ens') 2009-07-04 15:03:57,546 DEBUG call_matlab --> clear all 2009-07-04 15:03:57,552 DEBUG call_matlab <-- >> 2009-07-04 15:03:57,552 DEBUG call_matlab --> close all 2009-07-04 15:03:57,631 DEBUG call_matlab <-- >> 2009-07-04 15:03:57,631 DEBUG call_matlab --> cd /home/data/at15_48/proc/os75nb/cal/watertrk 2009-07-04 15:03:57,634 DEBUG call_matlab <-- >> 2009-07-04 15:03:57,634 DEBUG call_matlab --> calladcpcal_tmp 2009-07-04 15:03:59,681 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps Warning: Divide by zero. > In mean at 29 In adcpcal1 at 111 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In var at 91 In std at 32 In adcpcal1 at 112 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In mean at 29 In adcpcal1 at 114 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In var at 91 In std at 32 In adcpcal1 at 115 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In mean at 29 In adcpcal1 at 117 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In var at 91 In std at 32 In adcpcal1 at 118 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In mean at 29 In adcpcal1 at 120 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In var at 91 In std at 32 In adcpcal1 at 121 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In mean at 29 In adcpcal1 at 123 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In var at 91 In std at 32 In adcpcal1 at 124 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In mean at 29 In adcpcal1 at 126 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In var at 91 In std at 32 In adcpcal1 at 127 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In mean at 29 In adcpcal1 at 129 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In var at 91 In std at 32 In adcpcal1 at 130 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Divide by zero. > In mean at 29 In adcpcal1 at 133 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Polynomial is not unique; degree >= number of data points. > In polyfit at 72 In adcpcal1 at 134 In adcpcal at 58 In calladcpcal_tmp at 10 Warning: Polynomial is not unique; degree >= number of data points. > In polyfit at 72 In adcpcal1 at 135 In adcpcal at 58 In calladcpcal_tmp at 10 ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [1x11 double] igood: [] >> 2009-07-04 15:03:59,681 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-07-04 15:03:59,681 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:59,682 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/vector 2009-07-04 15:03:59,682 DEBUG quick_setup running python command "method" 2009-07-04 15:03:59,682 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2009-07-04 15:03:59,728 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:59,728 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/vector 2009-07-04 15:03:59,729 DEBUG quick_setup running python command "method" 2009-07-04 15:03:59,729 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-07-04 15:03:59,762 DEBUG quick_asect done making vector matfiles 2009-07-04 15:03:59,763 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:59,763 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/contour 2009-07-04 15:03:59,763 DEBUG quick_setup running python command "method" 2009-07-04 15:03:59,764 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_at.tmp 2009-07-04 15:03:59,771 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:59,772 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/contour 2009-07-04 15:03:59,772 DEBUG quick_setup running python command "method" 2009-07-04 15:03:59,772 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-07-04 15:03:59,818 DEBUG quick_setup starting in /home/data/at15_48/proc/os75nb 2009-07-04 15:03:59,818 DEBUG quick_setup executing commands from /home/data/at15_48/proc/os75nb/contour 2009-07-04 15:03:59,818 DEBUG quick_setup about to run getmat -rs -f allbins_ ../adcpdb/a_at 2009-07-04 15:03:59,962 DEBUG quick_asect done running getmat with "allbins" 2009-07-04 15:03:59,974 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2009-07-04 15:03:59,974 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2009-07-04 15:03:59,975 DEBUG root matfile is contour/contour_uv.mat 2009-07-04 15:03:59,977 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2009-07-04 15:03:59,978 DEBUG root matfile is vector/vector_uv.mat 2009-07-04 15:03:59,978 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2009-07-04 15:03:59,979 DEBUG root matfile is contour/contour_xy.mat 2009-07-04 15:03:59,979 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2009-07-04 15:03:59,979 DEBUG root matfile is vector/vector_xy.mat 2009-07-04 15:03:59,980 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2009-07-04 15:03:59,980 DEBUG root about to copy file edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2009-07-04 15:03:59,981 INFO root copying edit/a_at.tem to /home/adcp/www/data/os75nb_temp.asc 2009-07-04 15:03:59,981 INFO root Ending quick_adcp.py 2009-07-04 15:04:00,084 DEBUG quick_setup killed matlab engine