2010-10-23 08:35:06,590 DEBUG root about to write control file parameters to --yearbase 2010 --pingtype nb --cfgbase rr1014 --cruisename rr1014 --instclass os --instname os75 --dbname a_rr --datatype uhdas --datadir /home/data/rr1014/raw/os75 --cfgpath /home/data/rr1014/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto 2010-10-23 08:35:06,592 DEBUG quick_adcp progdir = /home/currents/programs 2010-10-23 08:35:06,592 DEBUG quick_adcp binos = lnx 2010-10-23 08:35:06,592 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2010-10-23 08:35:06,592 DEBUG quick_setup yearbase is 2010, proc_yearbase is 2010 2010-10-23 08:35:06,593 DEBUG quick_setup processing data logged with uhdas: 2010-10-23 08:35:06,593 DEBUG quick_setup datatype is uhdas 2010-10-23 08:35:06,593 DEBUG quick_setup pingtype is nb 2010-10-23 08:35:06,593 DEBUG quick_setup instclass is os 2010-10-23 08:35:06,593 DEBUG quick_setup no post-processing heading correction will be used 2010-10-23 08:35:06,593 DEBUG quick_setup transducer depth set in *_cfg.m file 2010-10-23 08:35:06,593 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'rr1014',... 'cfgpath' , '/home/data/rr1014/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2010-10-23 08:35:06,593 DEBUG quick_setup ------- starting Matlab engine ------- 2010-10-23 08:35:06,593 DEBUG quick_setup ['/home/currents/programs/matlab'] 2010-10-23 08:35:06,596 DEBUG call_matlab starting to wait for initial prompt 2010-10-23 08:35:07,327 DEBUG call_matlab received initial prompt 2010-10-23 08:35:07,478 DEBUG quick_adcp cwd is /home/data/rr1014/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-23 08:35:07,478 DEBUG quick_adcp original fix file is a_rr.gps 2010-10-23 08:35:07,478 DEBUG quick_adcp smoothed nav file is refsm.sm 2010-10-23 08:35:07,478 DEBUG quick_asect extracting matlab files for os75, nb pings 2010-10-23 08:35:07,579 DEBUG quick_subs found 133 files using wildcard expansion from "/home/data/rr1014/raw/os75/*.raw" 2010-10-23 08:35:07,579 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/rr1014/raw/os75/rr2010_284_34467.raw /home/data/rr1014/raw/os75/rr2010_284_36000.raw /home/data/rr1014/raw/os75/rr2010_284_43200.raw /home/data/rr1014/raw/os75/rr2010_284_50400.raw /home/data/rr1014/raw/os75/rr2010_284_57600.raw /home/data/rr1014/raw/os75/rr2010_284_64800.raw /home/data/rr1014/raw/os75/rr2010_284_72000.raw /home/data/rr1014/raw/os75/rr2010_284_79200.raw /home/data/rr1014/raw/os75/rr2010_285_00000.raw /home/data/rr1014/raw/os75/rr2010_285_07200.raw /home/data/rr1014/raw/os75/rr2010_285_14400.raw /home/data/rr1014/raw/os75/rr2010_285_21600.raw /home/data/rr1014/raw/os75/rr2010_285_28800.raw /home/data/rr1014/raw/os75/rr2010_285_36000.raw /home/data/rr1014/raw/os75/rr2010_285_43200.raw /home/data/rr1014/raw/os75/rr2010_285_50400.raw /home/data/rr1014/raw/os75/rr2010_285_57600.raw /home/data/rr1014/raw/os75/rr2010_285_64800.raw /home/data/rr1014/raw/os75/rr2010_285_72000.raw /home/data/rr1014/raw/os75/rr2010_285_79200.raw /home/data/rr1014/raw/os75/rr2010_286_00000.raw /home/data/rr1014/raw/os75/rr2010_286_07200.raw /home/data/rr1014/raw/os75/rr2010_286_14400.raw /home/data/rr1014/raw/os75/rr2010_286_21600.raw /home/data/rr1014/raw/os75/rr2010_286_28800.raw /home/data/rr1014/raw/os75/rr2010_286_36000.raw /home/data/rr1014/raw/os75/rr2010_286_43200.raw /home/data/rr1014/raw/os75/rr2010_286_50400.raw /home/data/rr1014/raw/os75/rr2010_286_57600.raw /home/data/rr1014/raw/os75/rr2010_286_64800.raw /home/data/rr1014/raw/os75/rr2010_286_72000.raw /home/data/rr1014/raw/os75/rr2010_286_79200.raw /home/data/rr1014/raw/os75/rr2010_287_00000.raw /home/data/rr1014/raw/os75/rr2010_287_07200.raw /home/data/rr1014/raw/os75/rr2010_287_14400.raw /home/data/rr1014/raw/os75/rr2010_287_21600.raw /home/data/rr1014/raw/os75/rr2010_287_28800.raw /home/data/rr1014/raw/os75/rr2010_287_36000.raw /home/data/rr1014/raw/os75/rr2010_287_43200.raw /home/data/rr1014/raw/os75/rr2010_287_50400.raw /home/data/rr1014/raw/os75/rr2010_287_57600.raw /home/data/rr1014/raw/os75/rr2010_287_64800.raw /home/data/rr1014/raw/os75/rr2010_287_72000.raw /home/data/rr1014/raw/os75/rr2010_287_79200.raw /home/data/rr1014/raw/os75/rr2010_288_00000.raw /home/data/rr1014/raw/os75/rr2010_288_07200.raw /home/data/rr1014/raw/os75/rr2010_288_14400.raw /home/data/rr1014/raw/os75/rr2010_288_21600.raw /home/data/rr1014/raw/os75/rr2010_288_28800.raw /home/data/rr1014/raw/os75/rr2010_288_36000.raw /home/data/rr1014/raw/os75/rr2010_288_43200.raw /home/data/rr1014/raw/os75/rr2010_288_50400.raw /home/data/rr1014/raw/os75/rr2010_288_57600.raw /home/data/rr1014/raw/os75/rr2010_288_64800.raw /home/data/rr1014/raw/os75/rr2010_288_72000.raw /home/data/rr1014/raw/os75/rr2010_288_79200.raw /home/data/rr1014/raw/os75/rr2010_289_00000.raw /home/data/rr1014/raw/os75/rr2010_289_07200.raw /home/data/rr1014/raw/os75/rr2010_289_14400.raw /home/data/rr1014/raw/os75/rr2010_289_21600.raw /home/data/rr1014/raw/os75/rr2010_289_28800.raw /home/data/rr1014/raw/os75/rr2010_289_36000.raw /home/data/rr1014/raw/os75/rr2010_289_43200.raw /home/data/rr1014/raw/os75/rr2010_289_50400.raw /home/data/rr1014/raw/os75/rr2010_289_57600.raw /home/data/rr1014/raw/os75/rr2010_289_64800.raw /home/data/rr1014/raw/os75/rr2010_289_72000.raw /home/data/rr1014/raw/os75/rr2010_289_79200.raw /home/data/rr1014/raw/os75/rr2010_290_00000.raw /home/data/rr1014/raw/os75/rr2010_290_07200.raw /home/data/rr1014/raw/os75/rr2010_290_14400.raw /home/data/rr1014/raw/os75/rr2010_290_21600.raw /home/data/rr1014/raw/os75/rr2010_290_28800.raw /home/data/rr1014/raw/os75/rr2010_290_36000.raw /home/data/rr1014/raw/os75/rr2010_290_43200.raw /home/data/rr1014/raw/os75/rr2010_290_50400.raw /home/data/rr1014/raw/os75/rr2010_290_57600.raw /home/data/rr1014/raw/os75/rr2010_290_64800.raw /home/data/rr1014/raw/os75/rr2010_290_72000.raw /home/data/rr1014/raw/os75/rr2010_290_79200.raw /home/data/rr1014/raw/os75/rr2010_291_00000.raw /home/data/rr1014/raw/os75/rr2010_291_07200.raw /home/data/rr1014/raw/os75/rr2010_291_14400.raw /home/data/rr1014/raw/os75/rr2010_291_21600.raw /home/data/rr1014/raw/os75/rr2010_291_28800.raw /home/data/rr1014/raw/os75/rr2010_291_36000.raw /home/data/rr1014/raw/os75/rr2010_291_43200.raw /home/data/rr1014/raw/os75/rr2010_291_50400.raw /home/data/rr1014/raw/os75/rr2010_291_57600.raw /home/data/rr1014/raw/os75/rr2010_291_64800.raw /home/data/rr1014/raw/os75/rr2010_291_72000.raw /home/data/rr1014/raw/os75/rr2010_291_79200.raw /home/data/rr1014/raw/os75/rr2010_292_00000.raw /home/data/rr1014/raw/os75/rr2010_292_07200.raw /home/data/rr1014/raw/os75/rr2010_292_14400.raw /home/data/rr1014/raw/os75/rr2010_292_21600.raw /home/data/rr1014/raw/os75/rr2010_292_28800.raw /home/data/rr1014/raw/os75/rr2010_292_36000.raw /home/data/rr1014/raw/os75/rr2010_292_43200.raw /home/data/rr1014/raw/os75/rr2010_292_50400.raw /home/data/rr1014/raw/os75/rr2010_292_57600.raw /home/data/rr1014/raw/os75/rr2010_292_64800.raw /home/data/rr1014/raw/os75/rr2010_292_72000.raw /home/data/rr1014/raw/os75/rr2010_292_79200.raw /home/data/rr1014/raw/os75/rr2010_293_00000.raw /home/data/rr1014/raw/os75/rr2010_293_07200.raw /home/data/rr1014/raw/os75/rr2010_293_14400.raw /home/data/rr1014/raw/os75/rr2010_293_21600.raw /home/data/rr1014/raw/os75/rr2010_293_28800.raw /home/data/rr1014/raw/os75/rr2010_293_36000.raw /home/data/rr1014/raw/os75/rr2010_293_43200.raw /home/data/rr1014/raw/os75/rr2010_293_50400.raw /home/data/rr1014/raw/os75/rr2010_293_57600.raw /home/data/rr1014/raw/os75/rr2010_293_64800.raw /home/data/rr1014/raw/os75/rr2010_293_72000.raw /home/data/rr1014/raw/os75/rr2010_293_79200.raw /home/data/rr1014/raw/os75/rr2010_294_00000.raw /home/data/rr1014/raw/os75/rr2010_294_07200.raw /home/data/rr1014/raw/os75/rr2010_294_14400.raw /home/data/rr1014/raw/os75/rr2010_294_21600.raw /home/data/rr1014/raw/os75/rr2010_294_28800.raw /home/data/rr1014/raw/os75/rr2010_294_36000.raw /home/data/rr1014/raw/os75/rr2010_294_43200.raw /home/data/rr1014/raw/os75/rr2010_294_50400.raw /home/data/rr1014/raw/os75/rr2010_294_57600.raw /home/data/rr1014/raw/os75/rr2010_294_64800.raw /home/data/rr1014/raw/os75/rr2010_294_72000.raw /home/data/rr1014/raw/os75/rr2010_294_79200.raw /home/data/rr1014/raw/os75/rr2010_295_00000.raw /home/data/rr1014/raw/os75/rr2010_295_07200.raw /home/data/rr1014/raw/os75/rr2010_295_14400.raw /home/data/rr1014/raw/os75/rr2010_295_21600.raw /home/data/rr1014/raw/os75/rr2010_295_28800.raw 2010-10-23 08:35:07,580 DEBUG quick_adcp LASTFILES invoked. using only 133 files from end of filelist 2010-10-23 08:35:07,580 DEBUG quick_adcp using delblks = 1 2010-10-23 08:35:07,580 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/rr1014/raw/os75/rr2010_284_34467.raw /home/data/rr1014/raw/os75/rr2010_284_36000.raw /home/data/rr1014/raw/os75/rr2010_284_43200.raw /home/data/rr1014/raw/os75/rr2010_284_50400.raw /home/data/rr1014/raw/os75/rr2010_284_57600.raw /home/data/rr1014/raw/os75/rr2010_284_64800.raw /home/data/rr1014/raw/os75/rr2010_284_72000.raw /home/data/rr1014/raw/os75/rr2010_284_79200.raw /home/data/rr1014/raw/os75/rr2010_285_00000.raw /home/data/rr1014/raw/os75/rr2010_285_07200.raw /home/data/rr1014/raw/os75/rr2010_285_14400.raw /home/data/rr1014/raw/os75/rr2010_285_21600.raw /home/data/rr1014/raw/os75/rr2010_285_28800.raw /home/data/rr1014/raw/os75/rr2010_285_36000.raw /home/data/rr1014/raw/os75/rr2010_285_43200.raw /home/data/rr1014/raw/os75/rr2010_285_50400.raw /home/data/rr1014/raw/os75/rr2010_285_57600.raw /home/data/rr1014/raw/os75/rr2010_285_64800.raw /home/data/rr1014/raw/os75/rr2010_285_72000.raw /home/data/rr1014/raw/os75/rr2010_285_79200.raw /home/data/rr1014/raw/os75/rr2010_286_00000.raw /home/data/rr1014/raw/os75/rr2010_286_07200.raw /home/data/rr1014/raw/os75/rr2010_286_14400.raw /home/data/rr1014/raw/os75/rr2010_286_21600.raw /home/data/rr1014/raw/os75/rr2010_286_28800.raw /home/data/rr1014/raw/os75/rr2010_286_36000.raw /home/data/rr1014/raw/os75/rr2010_286_43200.raw /home/data/rr1014/raw/os75/rr2010_286_50400.raw /home/data/rr1014/raw/os75/rr2010_286_57600.raw /home/data/rr1014/raw/os75/rr2010_286_64800.raw /home/data/rr1014/raw/os75/rr2010_286_72000.raw /home/data/rr1014/raw/os75/rr2010_286_79200.raw /home/data/rr1014/raw/os75/rr2010_287_00000.raw /home/data/rr1014/raw/os75/rr2010_287_07200.raw /home/data/rr1014/raw/os75/rr2010_287_14400.raw /home/data/rr1014/raw/os75/rr2010_287_21600.raw /home/data/rr1014/raw/os75/rr2010_287_28800.raw /home/data/rr1014/raw/os75/rr2010_287_36000.raw /home/data/rr1014/raw/os75/rr2010_287_43200.raw /home/data/rr1014/raw/os75/rr2010_287_50400.raw /home/data/rr1014/raw/os75/rr2010_287_57600.raw /home/data/rr1014/raw/os75/rr2010_287_64800.raw /home/data/rr1014/raw/os75/rr2010_287_72000.raw /home/data/rr1014/raw/os75/rr2010_287_79200.raw /home/data/rr1014/raw/os75/rr2010_288_00000.raw /home/data/rr1014/raw/os75/rr2010_288_07200.raw /home/data/rr1014/raw/os75/rr2010_288_14400.raw /home/data/rr1014/raw/os75/rr2010_288_21600.raw /home/data/rr1014/raw/os75/rr2010_288_28800.raw /home/data/rr1014/raw/os75/rr2010_288_36000.raw /home/data/rr1014/raw/os75/rr2010_288_43200.raw /home/data/rr1014/raw/os75/rr2010_288_50400.raw /home/data/rr1014/raw/os75/rr2010_288_57600.raw /home/data/rr1014/raw/os75/rr2010_288_64800.raw /home/data/rr1014/raw/os75/rr2010_288_72000.raw /home/data/rr1014/raw/os75/rr2010_288_79200.raw /home/data/rr1014/raw/os75/rr2010_289_00000.raw /home/data/rr1014/raw/os75/rr2010_289_07200.raw /home/data/rr1014/raw/os75/rr2010_289_14400.raw /home/data/rr1014/raw/os75/rr2010_289_21600.raw /home/data/rr1014/raw/os75/rr2010_289_28800.raw /home/data/rr1014/raw/os75/rr2010_289_36000.raw /home/data/rr1014/raw/os75/rr2010_289_43200.raw /home/data/rr1014/raw/os75/rr2010_289_50400.raw /home/data/rr1014/raw/os75/rr2010_289_57600.raw /home/data/rr1014/raw/os75/rr2010_289_64800.raw /home/data/rr1014/raw/os75/rr2010_289_72000.raw /home/data/rr1014/raw/os75/rr2010_289_79200.raw /home/data/rr1014/raw/os75/rr2010_290_00000.raw /home/data/rr1014/raw/os75/rr2010_290_07200.raw /home/data/rr1014/raw/os75/rr2010_290_14400.raw /home/data/rr1014/raw/os75/rr2010_290_21600.raw /home/data/rr1014/raw/os75/rr2010_290_28800.raw /home/data/rr1014/raw/os75/rr2010_290_36000.raw /home/data/rr1014/raw/os75/rr2010_290_43200.raw /home/data/rr1014/raw/os75/rr2010_290_50400.raw /home/data/rr1014/raw/os75/rr2010_290_57600.raw /home/data/rr1014/raw/os75/rr2010_290_64800.raw /home/data/rr1014/raw/os75/rr2010_290_72000.raw /home/data/rr1014/raw/os75/rr2010_290_79200.raw /home/data/rr1014/raw/os75/rr2010_291_00000.raw /home/data/rr1014/raw/os75/rr2010_291_07200.raw /home/data/rr1014/raw/os75/rr2010_291_14400.raw /home/data/rr1014/raw/os75/rr2010_291_21600.raw /home/data/rr1014/raw/os75/rr2010_291_28800.raw /home/data/rr1014/raw/os75/rr2010_291_36000.raw /home/data/rr1014/raw/os75/rr2010_291_43200.raw /home/data/rr1014/raw/os75/rr2010_291_50400.raw /home/data/rr1014/raw/os75/rr2010_291_57600.raw /home/data/rr1014/raw/os75/rr2010_291_64800.raw /home/data/rr1014/raw/os75/rr2010_291_72000.raw /home/data/rr1014/raw/os75/rr2010_291_79200.raw /home/data/rr1014/raw/os75/rr2010_292_00000.raw /home/data/rr1014/raw/os75/rr2010_292_07200.raw /home/data/rr1014/raw/os75/rr2010_292_14400.raw /home/data/rr1014/raw/os75/rr2010_292_21600.raw /home/data/rr1014/raw/os75/rr2010_292_28800.raw /home/data/rr1014/raw/os75/rr2010_292_36000.raw /home/data/rr1014/raw/os75/rr2010_292_43200.raw /home/data/rr1014/raw/os75/rr2010_292_50400.raw /home/data/rr1014/raw/os75/rr2010_292_57600.raw /home/data/rr1014/raw/os75/rr2010_292_64800.raw /home/data/rr1014/raw/os75/rr2010_292_72000.raw /home/data/rr1014/raw/os75/rr2010_292_79200.raw /home/data/rr1014/raw/os75/rr2010_293_00000.raw /home/data/rr1014/raw/os75/rr2010_293_07200.raw /home/data/rr1014/raw/os75/rr2010_293_14400.raw /home/data/rr1014/raw/os75/rr2010_293_21600.raw /home/data/rr1014/raw/os75/rr2010_293_28800.raw /home/data/rr1014/raw/os75/rr2010_293_36000.raw /home/data/rr1014/raw/os75/rr2010_293_43200.raw /home/data/rr1014/raw/os75/rr2010_293_50400.raw /home/data/rr1014/raw/os75/rr2010_293_57600.raw /home/data/rr1014/raw/os75/rr2010_293_64800.raw /home/data/rr1014/raw/os75/rr2010_293_72000.raw /home/data/rr1014/raw/os75/rr2010_293_79200.raw /home/data/rr1014/raw/os75/rr2010_294_00000.raw /home/data/rr1014/raw/os75/rr2010_294_07200.raw /home/data/rr1014/raw/os75/rr2010_294_14400.raw /home/data/rr1014/raw/os75/rr2010_294_21600.raw /home/data/rr1014/raw/os75/rr2010_294_28800.raw /home/data/rr1014/raw/os75/rr2010_294_36000.raw /home/data/rr1014/raw/os75/rr2010_294_43200.raw /home/data/rr1014/raw/os75/rr2010_294_50400.raw /home/data/rr1014/raw/os75/rr2010_294_57600.raw /home/data/rr1014/raw/os75/rr2010_294_64800.raw /home/data/rr1014/raw/os75/rr2010_294_72000.raw /home/data/rr1014/raw/os75/rr2010_294_79200.raw /home/data/rr1014/raw/os75/rr2010_295_00000.raw /home/data/rr1014/raw/os75/rr2010_295_07200.raw /home/data/rr1014/raw/os75/rr2010_295_14400.raw /home/data/rr1014/raw/os75/rr2010_295_21600.raw /home/data/rr1014/raw/os75/rr2010_295_28800.raw 2010-10-23 08:35:07,581 DEBUG quick_adcp Sat Oct 23 08:35:07 2010 running quick_adcp.py as follows: --cntfile /home/data/rr1014/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_rr cbasename contour dbname a_rr dbpath ../adcpdb deeper_boundaries [75, 125, 175, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850] firstdepth 28 gridnum 45 increment 20 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2010 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.065 adjust_time 1 afilebase a_rr allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase rr1014 cfgpath /home/data/rr1014/proc/os75nb/config cntfile /home/data/rr1014/proc/os75nb/os75nb_qpy.cnt commands None cruisename rr1014 data_def vmadcp.def datadir /home/data/rr1014/raw/os75 datafile_glob *.raw datatype uhdas dbname a_rr dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/rr1014/raw/os75/rr2010_284_34467.raw', '/home/data/rr1014/raw/os75/rr2010_284_36000.raw', '/home/data/rr1014/raw/os75/rr2010_284_43200.raw', '/home/data/rr1014/raw/os75/rr2010_284_50400.raw', '/home/data/rr1014/raw/os75/rr2010_284_57600.raw', '/home/data/rr1014/raw/os75/rr2010_284_64800.raw', '/home/data/rr1014/raw/os75/rr2010_284_72000.raw', '/home/data/rr1014/raw/os75/rr2010_284_79200.raw', '/home/data/rr1014/raw/os75/rr2010_285_00000.raw', '/home/data/rr1014/raw/os75/rr2010_285_07200.raw', '/home/data/rr1014/raw/os75/rr2010_285_14400.raw', '/home/data/rr1014/raw/os75/rr2010_285_21600.raw', '/home/data/rr1014/raw/os75/rr2010_285_28800.raw', '/home/data/rr1014/raw/os75/rr2010_285_36000.raw', '/home/data/rr1014/raw/os75/rr2010_285_43200.raw', '/home/data/rr1014/raw/os75/rr2010_285_50400.raw', '/home/data/rr1014/raw/os75/rr2010_285_57600.raw', '/home/data/rr1014/raw/os75/rr2010_285_64800.raw', '/home/data/rr1014/raw/os75/rr2010_285_72000.raw', 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'/home/data/rr1014/raw/os75/rr2010_293_72000.raw', '/home/data/rr1014/raw/os75/rr2010_293_79200.raw', '/home/data/rr1014/raw/os75/rr2010_294_00000.raw', '/home/data/rr1014/raw/os75/rr2010_294_07200.raw', '/home/data/rr1014/raw/os75/rr2010_294_14400.raw', '/home/data/rr1014/raw/os75/rr2010_294_21600.raw', '/home/data/rr1014/raw/os75/rr2010_294_28800.raw', '/home/data/rr1014/raw/os75/rr2010_294_36000.raw', '/home/data/rr1014/raw/os75/rr2010_294_43200.raw', '/home/data/rr1014/raw/os75/rr2010_294_50400.raw', '/home/data/rr1014/raw/os75/rr2010_294_57600.raw', '/home/data/rr1014/raw/os75/rr2010_294_64800.raw', '/home/data/rr1014/raw/os75/rr2010_294_72000.raw', '/home/data/rr1014/raw/os75/rr2010_294_79200.raw', '/home/data/rr1014/raw/os75/rr2010_295_00000.raw', '/home/data/rr1014/raw/os75/rr2010_295_07200.raw', '/home/data/rr1014/raw/os75/rr2010_295_14400.raw', '/home/data/rr1014/raw/os75/rr2010_295_21600.raw', '/home/data/rr1014/raw/os75/rr2010_295_28800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 28 fixfile a_rr.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2010; yearbase = 2010; cfg =get_uhdascfg('cfgbase' , 'rr1014',... 'cfgpath' , '/home/data/rr1014/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_rr.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2010 procdir os75nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/rr1014/raw/os75/rr2010_284_34467.raw', '/home/data/rr1014/raw/os75/rr2010_284_36000.raw', '/home/data/rr1014/raw/os75/rr2010_284_43200.raw', '/home/data/rr1014/raw/os75/rr2010_284_50400.raw', '/home/data/rr1014/raw/os75/rr2010_284_57600.raw', '/home/data/rr1014/raw/os75/rr2010_284_64800.raw', '/home/data/rr1014/raw/os75/rr2010_284_72000.raw', '/home/data/rr1014/raw/os75/rr2010_284_79200.raw', 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'/home/data/rr1014/raw/os75/rr2010_294_43200.raw', '/home/data/rr1014/raw/os75/rr2010_294_50400.raw', '/home/data/rr1014/raw/os75/rr2010_294_57600.raw', '/home/data/rr1014/raw/os75/rr2010_294_64800.raw', '/home/data/rr1014/raw/os75/rr2010_294_72000.raw', '/home/data/rr1014/raw/os75/rr2010_294_79200.raw', '/home/data/rr1014/raw/os75/rr2010_295_00000.raw', '/home/data/rr1014/raw/os75/rr2010_295_07200.raw', '/home/data/rr1014/raw/os75/rr2010_295_14400.raw', '/home/data/rr1014/raw/os75/rr2010_295_21600.raw', '/home/data/rr1014/raw/os75/rr2010_295_28800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2010 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2010-10-23 08:35:07,582 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2010-10-23 08:35:07,582 DEBUG quick_run scanning files for time ranges... 2010-10-23 08:35:07,582 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb/scan 2010-10-23 08:35:07,582 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/scan 2010-10-23 08:35:07,582 DEBUG quick_setup running python command "method" 2010-10-23 08:35:07,582 DEBUG call_matlab --> clear all 2010-10-23 08:35:07,586 DEBUG call_matlab <-- >> 2010-10-23 08:35:07,586 DEBUG call_matlab --> close all 2010-10-23 08:35:07,625 DEBUG call_matlab <-- >> 2010-10-23 08:35:07,625 DEBUG call_matlab --> cd /home/data/rr1014/proc/os75nb/scan 2010-10-23 08:35:07,626 DEBUG call_matlab <-- >> 2010-10-23 08:35:07,627 DEBUG call_matlab --> scan_tmp 2010-10-23 08:35:08,159 DEBUG call_matlab <-- getting config files from "/home/data/rr1014/proc/os75nb/config" running "rr1014_cfg.m" running "rr1014_proc.m" writing scan info to a_rr.scn >> 2010-10-23 08:35:08,160 DEBUG quick_run writing time range from a_rr.scn to a_rr.tr 2010-10-23 08:35:08,160 DEBUG quick_run getting scan time range 2010-10-23 08:35:08,161 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,161 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/scan 2010-10-23 08:35:08,161 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,161 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,162 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,163 DEBUG quick_subs start_end_time 2010/10/12 09:34:32 to 2010/10/23 08:30:52 2010-10-23 08:35:08,163 DEBUG quick_subs dd0: 284.398981 dd1: 295.354769 2010-10-23 08:35:08,163 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,163 DEBUG quick_adcp looking for database with adcpdb/a_rr*.blk 2010-10-23 08:35:08,164 DEBUG quick_adcp database found: listing blocks 2010-10-23 08:35:08,164 DEBUG quick_subs removing a_rrdir.blk 2010-10-23 08:35:08,164 DEBUG quick_subs about to run mkblkdir 2010-10-23 08:35:08,164 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-23 08:35:08,165 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-23 08:35:08,173 DEBUG quick_subs database passes. 2010-10-23 08:35:08,173 DEBUG quick_subs writing time range from a_rr.lst to a_rr.tr 2010-10-23 08:35:08,173 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,173 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,173 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,173 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,174 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,174 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 08:00:23 2010-10-23 08:35:08,174 DEBUG quick_subs dd0: 284.402512 dd1: 295.333600 2010-10-23 08:35:08,174 DEBUG quick_subs writing time range from a_rr.lst to a_rr.tr 2010-10-23 08:35:08,175 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,175 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,175 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,175 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,175 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,175 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 08:00:23 2010-10-23 08:35:08,176 DEBUG quick_subs dd0: 284.402512 dd1: 295.333600 2010-10-23 08:35:08,176 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2010-10-23 08:35:08,176 DEBUG quick_adcp origdb_time_range is 2010/10/12 09:39:37 to 2010/10/23 08:00:23 2010-10-23 08:35:08,176 DEBUG quick_adcp (284.402512 to 295.333600) 2010-10-23 08:35:08,176 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2010-10-23 08:35:08,176 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-23 08:35:08,177 DEBUG quick_subs ['adcpdb/a_rr015.blk', 'adcpdb/a_rr002.blk', 'adcpdb/a_rr014.blk', 'adcpdb/a_rr017.blk', 'adcpdb/a_rr009.blk', 'adcpdb/a_rr019.blk', 'adcpdb/a_rr022.blk', 'adcpdb/a_rr004.blk', 'adcpdb/a_rr011.blk', 'adcpdb/a_rr012.blk', 'adcpdb/a_rr005.blk', 'adcpdb/a_rr006.blk', 'adcpdb/a_rr001.blk', 'adcpdb/a_rr016.blk', 'adcpdb/a_rr003.blk', 'adcpdb/a_rrdir.blk', 'adcpdb/a_rr007.blk', 'adcpdb/a_rr013.blk', 'adcpdb/a_rr010.blk', 'adcpdb/a_rr008.blk', 'adcpdb/a_rr018.blk', 'adcpdb/a_rr021.blk', 'adcpdb/a_rr020.blk'] 2010-10-23 08:35:08,177 DEBUG quick_subs length is 23 2010-10-23 08:35:08,177 DEBUG quick_subs removing a_rrdir.blk 2010-10-23 08:35:08,177 DEBUG quick_subs about to run mkblkdir 2010-10-23 08:35:08,177 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-23 08:35:08,177 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-23 08:35:08,185 DEBUG quick_subs database passes. 2010-10-23 08:35:08,185 DEBUG quick_subs writing time range from a_rr.lst to a_rr.tr 2010-10-23 08:35:08,185 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,185 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,186 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,186 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,186 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,186 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 08:00:23 2010-10-23 08:35:08,186 DEBUG quick_subs dd0: 284.402512 dd1: 295.333600 2010-10-23 08:35:08,187 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,187 DEBUG quick_subs reading time range 2010-10-23 08:35:08,187 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 08:00:23 2010-10-23 08:35:08,187 DEBUG quick_subs dd0: 284.402512 dd1: 295.333600 2010-10-23 08:35:08,188 INFO quick_subs Sat Oct 23 08:35:08 2010 2010-10-23 08:35:08,188 INFO quick_subs checking database time range by listblk 2010-10-23 08:35:08,188 DEBUG quick_subs removing a_rrdir.blk 2010-10-23 08:35:08,188 DEBUG quick_subs about to run mkblkdir 2010-10-23 08:35:08,188 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-23 08:35:08,188 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-23 08:35:08,196 DEBUG quick_subs database passes. 2010-10-23 08:35:08,196 DEBUG quick_subs writing time range from a_rr.lst to a_rr.tr 2010-10-23 08:35:08,197 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,197 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,197 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,197 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,197 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,198 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 08:00:23 2010-10-23 08:35:08,198 DEBUG quick_subs dd0: 284.402512 dd1: 295.333600 2010-10-23 08:35:08,199 INFO quick_subs found line /* 0 n= 146 a_rr001.blk */ 2010/10/12 09:39:37 to 2010/10/12 21:48:39 2010-10-23 08:35:08,199 INFO quick_subs found line /* 1 n= 146 a_rr002.blk */ 2010/10/12 21:53:41 to 2010/10/13 10:02:42 2010-10-23 08:35:08,199 INFO quick_subs found line /* 2 n= 146 a_rr003.blk */ 2010/10/13 10:07:44 to 2010/10/13 22:16:43 2010-10-23 08:35:08,199 INFO quick_subs found line /* 3 n= 146 a_rr004.blk */ 2010/10/13 22:21:45 to 2010/10/14 10:35:45 2010-10-23 08:35:08,199 INFO quick_subs found line /* 4 n= 146 a_rr005.blk */ 2010/10/14 10:40:46 to 2010/10/14 22:49:47 2010-10-23 08:35:08,200 INFO quick_subs found line /* 5 n= 146 a_rr006.blk */ 2010/10/14 22:54:48 to 2010/10/15 11:03:44 2010-10-23 08:35:08,200 INFO quick_subs found line /* 6 n= 146 a_rr007.blk */ 2010/10/15 11:08:45 to 2010/10/15 23:17:42 2010-10-23 08:35:08,200 INFO quick_subs found line /* 7 n= 146 a_rr008.blk */ 2010/10/15 23:22:44 to 2010/10/16 11:36:45 2010-10-23 08:35:08,200 INFO quick_subs found line /* 8 n= 146 a_rr009.blk */ 2010/10/16 11:41:47 to 2010/10/16 23:50:46 2010-10-23 08:35:08,200 INFO quick_subs found line /* 9 n= 146 a_rr010.blk */ 2010/10/16 23:55:47 to 2010/10/17 12:04:43 2010-10-23 08:35:08,200 INFO quick_subs found line /* 10 n= 146 a_rr011.blk */ 2010/10/17 12:09:45 to 2010/10/18 00:18:39 2010-10-23 08:35:08,200 INFO quick_subs found line /* 11 n= 146 a_rr012.blk */ 2010/10/18 00:23:41 to 2010/10/18 12:37:35 2010-10-23 08:35:08,200 INFO quick_subs found line /* 12 n= 146 a_rr013.blk */ 2010/10/18 12:42:37 to 2010/10/19 00:51:32 2010-10-23 08:35:08,201 INFO quick_subs found line /* 13 n= 146 a_rr014.blk */ 2010/10/19 00:56:34 to 2010/10/19 13:05:34 2010-10-23 08:35:08,201 INFO quick_subs found line /* 14 n= 146 a_rr015.blk */ 2010/10/19 13:10:35 to 2010/10/20 01:19:35 2010-10-23 08:35:08,201 INFO quick_subs found line /* 15 n= 146 a_rr016.blk */ 2010/10/20 01:24:37 to 2010/10/20 13:33:36 2010-10-23 08:35:08,201 INFO quick_subs found line /* 16 n= 146 a_rr017.blk */ 2010/10/20 13:38:38 to 2010/10/21 01:47:39 2010-10-23 08:35:08,201 INFO quick_subs found line /* 17 n= 146 a_rr018.blk */ 2010/10/21 01:52:41 to 2010/10/21 14:01:38 2010-10-23 08:35:08,201 INFO quick_subs found line /* 18 n= 146 a_rr019.blk */ 2010/10/21 14:06:40 to 2010/10/22 02:20:42 2010-10-23 08:35:08,201 INFO quick_subs found line /* 19 n= 146 a_rr020.blk */ 2010/10/22 02:25:43 to 2010/10/22 14:34:41 2010-10-23 08:35:08,201 INFO quick_subs found line /* 20 n= 146 a_rr021.blk */ 2010/10/22 14:39:42 to 2010/10/23 02:48:42 2010-10-23 08:35:08,202 INFO quick_subs found line /* 21 n= 62 a_rr022.blk */ 2010/10/23 02:53:44 to 2010/10/23 08:00:23 2010-10-23 08:35:08,202 INFO quick_subs scan data start at 284.3989815 2010-10-23 08:35:08,202 INFO quick_subs scan time range: 2010/10/12 09:34:32 to 2010/10/23 08:30:52 2010-10-23 08:35:08,202 INFO quick_subs codasdb ends at 295.3335995 (2010/10/23 08:00:23) 2010-10-23 08:35:08,202 DEBUG quick_subs ... changed dirs, in /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,202 DEBUG quick_subs deleting these files: ['a_rr022.blk'] 2010-10-23 08:35:08,203 DEBUG quick_subs getting current (remaining after deletion) database times 2010-10-23 08:35:08,203 DEBUG quick_subs ['adcpdb/a_rr015.blk', 'adcpdb/a_rr002.blk', 'adcpdb/a_rr014.blk', 'adcpdb/a_rr017.blk', 'adcpdb/a_rr009.blk', 'adcpdb/a_rr019.blk', 'adcpdb/a_rr004.blk', 'adcpdb/a_rr011.blk', 'adcpdb/a_rr012.blk', 'adcpdb/a_rr005.blk', 'adcpdb/a_rr006.blk', 'adcpdb/a_rr001.blk', 'adcpdb/a_rr016.blk', 'adcpdb/a_rr003.blk', 'adcpdb/a_rr007.blk', 'adcpdb/a_rr013.blk', 'adcpdb/a_rr010.blk', 'adcpdb/a_rr008.blk', 'adcpdb/a_rr018.blk', 'adcpdb/a_rr021.blk', 'adcpdb/a_rr020.blk'] 2010-10-23 08:35:08,203 DEBUG quick_subs length is 21 2010-10-23 08:35:08,203 DEBUG quick_subs about to run mkblkdir 2010-10-23 08:35:08,203 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-23 08:35:08,204 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-23 08:35:08,211 DEBUG quick_subs database passes. 2010-10-23 08:35:08,211 DEBUG quick_subs writing time range from a_rr.lst to a_rr.tr 2010-10-23 08:35:08,211 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,211 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,212 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,212 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,212 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,212 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 02:48:42 2010-10-23 08:35:08,212 DEBUG quick_subs dd0: 284.402512 dd1: 295.117153 2010-10-23 08:35:08,213 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,213 DEBUG quick_subs reading time range 2010-10-23 08:35:08,213 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 02:48:42 2010-10-23 08:35:08,213 DEBUG quick_subs dd0: 284.402512 dd1: 295.117153 2010-10-23 08:35:08,213 DEBUG quick_subs codas database currently goes from 2010/10/12 09:39:37 to 2010/10/23 02:48:42 2010-10-23 08:35:08,213 DEBUG quick_subs (284.402512 to 295.117153) 2010-10-23 08:35:08,214 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016found existing adcpdb blocks: %s 017found existing adcpdb blocks: %s 018found existing adcpdb blocks: %s 019found existing adcpdb blocks: %s 020found existing adcpdb blocks: %s 021 2010-10-23 08:35:08,215 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 018 019 020 021 022 2010-10-23 08:35:08,215 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021'] 2010-10-23 08:35:08,215 DEBUG quick_subs checked: unloaded blkstrs: ['022'] 2010-10-23 08:35:08,215 DEBUG quick_subs first unloaded file is load/ens_blk022.cmd 2010-10-23 08:35:08,216 DEBUG quick_subs data goes from 2010/10/23 02:53:44 to 2010/10/23 08:30:52 2010-10-23 08:35:08,216 DEBUG quick_subs (295.120648 to 295.354769) 2010-10-23 08:35:08,216 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/rr1014/raw/os75/rr2010_284_34467.raw /home/data/rr1014/raw/os75/rr2010_284_36000.raw /home/data/rr1014/raw/os75/rr2010_284_43200.raw /home/data/rr1014/raw/os75/rr2010_284_50400.raw /home/data/rr1014/raw/os75/rr2010_284_57600.raw /home/data/rr1014/raw/os75/rr2010_284_64800.raw /home/data/rr1014/raw/os75/rr2010_284_72000.raw /home/data/rr1014/raw/os75/rr2010_284_79200.raw /home/data/rr1014/raw/os75/rr2010_285_00000.raw /home/data/rr1014/raw/os75/rr2010_285_07200.raw /home/data/rr1014/raw/os75/rr2010_285_14400.raw /home/data/rr1014/raw/os75/rr2010_285_21600.raw /home/data/rr1014/raw/os75/rr2010_285_28800.raw /home/data/rr1014/raw/os75/rr2010_285_36000.raw /home/data/rr1014/raw/os75/rr2010_285_43200.raw /home/data/rr1014/raw/os75/rr2010_285_50400.raw /home/data/rr1014/raw/os75/rr2010_285_57600.raw /home/data/rr1014/raw/os75/rr2010_285_64800.raw /home/data/rr1014/raw/os75/rr2010_285_72000.raw /home/data/rr1014/raw/os75/rr2010_285_79200.raw /home/data/rr1014/raw/os75/rr2010_286_00000.raw /home/data/rr1014/raw/os75/rr2010_286_07200.raw /home/data/rr1014/raw/os75/rr2010_286_14400.raw /home/data/rr1014/raw/os75/rr2010_286_21600.raw /home/data/rr1014/raw/os75/rr2010_286_28800.raw /home/data/rr1014/raw/os75/rr2010_286_36000.raw /home/data/rr1014/raw/os75/rr2010_286_43200.raw /home/data/rr1014/raw/os75/rr2010_286_50400.raw /home/data/rr1014/raw/os75/rr2010_286_57600.raw /home/data/rr1014/raw/os75/rr2010_286_64800.raw /home/data/rr1014/raw/os75/rr2010_286_72000.raw /home/data/rr1014/raw/os75/rr2010_286_79200.raw /home/data/rr1014/raw/os75/rr2010_287_00000.raw /home/data/rr1014/raw/os75/rr2010_287_07200.raw /home/data/rr1014/raw/os75/rr2010_287_14400.raw /home/data/rr1014/raw/os75/rr2010_287_21600.raw /home/data/rr1014/raw/os75/rr2010_287_28800.raw /home/data/rr1014/raw/os75/rr2010_287_36000.raw /home/data/rr1014/raw/os75/rr2010_287_43200.raw /home/data/rr1014/raw/os75/rr2010_287_50400.raw /home/data/rr1014/raw/os75/rr2010_287_57600.raw /home/data/rr1014/raw/os75/rr2010_287_64800.raw /home/data/rr1014/raw/os75/rr2010_287_72000.raw /home/data/rr1014/raw/os75/rr2010_287_79200.raw /home/data/rr1014/raw/os75/rr2010_288_00000.raw /home/data/rr1014/raw/os75/rr2010_288_07200.raw /home/data/rr1014/raw/os75/rr2010_288_14400.raw /home/data/rr1014/raw/os75/rr2010_288_21600.raw /home/data/rr1014/raw/os75/rr2010_288_28800.raw /home/data/rr1014/raw/os75/rr2010_288_36000.raw /home/data/rr1014/raw/os75/rr2010_288_43200.raw /home/data/rr1014/raw/os75/rr2010_288_50400.raw /home/data/rr1014/raw/os75/rr2010_288_57600.raw /home/data/rr1014/raw/os75/rr2010_288_64800.raw /home/data/rr1014/raw/os75/rr2010_288_72000.raw /home/data/rr1014/raw/os75/rr2010_288_79200.raw /home/data/rr1014/raw/os75/rr2010_289_00000.raw /home/data/rr1014/raw/os75/rr2010_289_07200.raw /home/data/rr1014/raw/os75/rr2010_289_14400.raw /home/data/rr1014/raw/os75/rr2010_289_21600.raw /home/data/rr1014/raw/os75/rr2010_289_28800.raw /home/data/rr1014/raw/os75/rr2010_289_36000.raw /home/data/rr1014/raw/os75/rr2010_289_43200.raw /home/data/rr1014/raw/os75/rr2010_289_50400.raw /home/data/rr1014/raw/os75/rr2010_289_57600.raw /home/data/rr1014/raw/os75/rr2010_289_64800.raw /home/data/rr1014/raw/os75/rr2010_289_72000.raw /home/data/rr1014/raw/os75/rr2010_289_79200.raw /home/data/rr1014/raw/os75/rr2010_290_00000.raw /home/data/rr1014/raw/os75/rr2010_290_07200.raw /home/data/rr1014/raw/os75/rr2010_290_14400.raw /home/data/rr1014/raw/os75/rr2010_290_21600.raw /home/data/rr1014/raw/os75/rr2010_290_28800.raw /home/data/rr1014/raw/os75/rr2010_290_36000.raw /home/data/rr1014/raw/os75/rr2010_290_43200.raw /home/data/rr1014/raw/os75/rr2010_290_50400.raw /home/data/rr1014/raw/os75/rr2010_290_57600.raw /home/data/rr1014/raw/os75/rr2010_290_64800.raw /home/data/rr1014/raw/os75/rr2010_290_72000.raw /home/data/rr1014/raw/os75/rr2010_290_79200.raw /home/data/rr1014/raw/os75/rr2010_291_00000.raw /home/data/rr1014/raw/os75/rr2010_291_07200.raw /home/data/rr1014/raw/os75/rr2010_291_14400.raw /home/data/rr1014/raw/os75/rr2010_291_21600.raw /home/data/rr1014/raw/os75/rr2010_291_28800.raw /home/data/rr1014/raw/os75/rr2010_291_36000.raw /home/data/rr1014/raw/os75/rr2010_291_43200.raw /home/data/rr1014/raw/os75/rr2010_291_50400.raw /home/data/rr1014/raw/os75/rr2010_291_57600.raw /home/data/rr1014/raw/os75/rr2010_291_64800.raw /home/data/rr1014/raw/os75/rr2010_291_72000.raw 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/home/data/rr1014/raw/os75/rr2010_295_21600.raw /home/data/rr1014/raw/os75/rr2010_295_28800.raw 2010-10-23 08:35:08,216 INFO quick_run Sat Oct 23 08:35:08 2010 2010-10-23 08:35:08,216 INFO quick_run about to load uhdas files 2010-10-23 08:35:08,216 INFO quick_run /home/data/rr1014/raw/os75/rr2010_284_34467.raw /home/data/rr1014/raw/os75/rr2010_284_36000.raw /home/data/rr1014/raw/os75/rr2010_284_43200.raw /home/data/rr1014/raw/os75/rr2010_284_50400.raw /home/data/rr1014/raw/os75/rr2010_284_57600.raw /home/data/rr1014/raw/os75/rr2010_284_64800.raw /home/data/rr1014/raw/os75/rr2010_284_72000.raw /home/data/rr1014/raw/os75/rr2010_284_79200.raw /home/data/rr1014/raw/os75/rr2010_285_00000.raw /home/data/rr1014/raw/os75/rr2010_285_07200.raw /home/data/rr1014/raw/os75/rr2010_285_14400.raw /home/data/rr1014/raw/os75/rr2010_285_21600.raw /home/data/rr1014/raw/os75/rr2010_285_28800.raw /home/data/rr1014/raw/os75/rr2010_285_36000.raw /home/data/rr1014/raw/os75/rr2010_285_43200.raw 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/home/data/rr1014/raw/os75/rr2010_290_50400.raw /home/data/rr1014/raw/os75/rr2010_290_57600.raw /home/data/rr1014/raw/os75/rr2010_290_64800.raw /home/data/rr1014/raw/os75/rr2010_290_72000.raw /home/data/rr1014/raw/os75/rr2010_290_79200.raw /home/data/rr1014/raw/os75/rr2010_291_00000.raw /home/data/rr1014/raw/os75/rr2010_291_07200.raw /home/data/rr1014/raw/os75/rr2010_291_14400.raw /home/data/rr1014/raw/os75/rr2010_291_21600.raw /home/data/rr1014/raw/os75/rr2010_291_28800.raw /home/data/rr1014/raw/os75/rr2010_291_36000.raw /home/data/rr1014/raw/os75/rr2010_291_43200.raw /home/data/rr1014/raw/os75/rr2010_291_50400.raw /home/data/rr1014/raw/os75/rr2010_291_57600.raw /home/data/rr1014/raw/os75/rr2010_291_64800.raw /home/data/rr1014/raw/os75/rr2010_291_72000.raw /home/data/rr1014/raw/os75/rr2010_291_79200.raw /home/data/rr1014/raw/os75/rr2010_292_00000.raw /home/data/rr1014/raw/os75/rr2010_292_07200.raw /home/data/rr1014/raw/os75/rr2010_292_14400.raw /home/data/rr1014/raw/os75/rr2010_292_21600.raw /home/data/rr1014/raw/os75/rr2010_292_28800.raw /home/data/rr1014/raw/os75/rr2010_292_36000.raw /home/data/rr1014/raw/os75/rr2010_292_43200.raw /home/data/rr1014/raw/os75/rr2010_292_50400.raw /home/data/rr1014/raw/os75/rr2010_292_57600.raw /home/data/rr1014/raw/os75/rr2010_292_64800.raw /home/data/rr1014/raw/os75/rr2010_292_72000.raw /home/data/rr1014/raw/os75/rr2010_292_79200.raw /home/data/rr1014/raw/os75/rr2010_293_00000.raw /home/data/rr1014/raw/os75/rr2010_293_07200.raw /home/data/rr1014/raw/os75/rr2010_293_14400.raw /home/data/rr1014/raw/os75/rr2010_293_21600.raw /home/data/rr1014/raw/os75/rr2010_293_28800.raw /home/data/rr1014/raw/os75/rr2010_293_36000.raw /home/data/rr1014/raw/os75/rr2010_293_43200.raw /home/data/rr1014/raw/os75/rr2010_293_50400.raw /home/data/rr1014/raw/os75/rr2010_293_57600.raw /home/data/rr1014/raw/os75/rr2010_293_64800.raw /home/data/rr1014/raw/os75/rr2010_293_72000.raw /home/data/rr1014/raw/os75/rr2010_293_79200.raw /home/data/rr1014/raw/os75/rr2010_294_00000.raw /home/data/rr1014/raw/os75/rr2010_294_07200.raw /home/data/rr1014/raw/os75/rr2010_294_14400.raw /home/data/rr1014/raw/os75/rr2010_294_21600.raw /home/data/rr1014/raw/os75/rr2010_294_28800.raw /home/data/rr1014/raw/os75/rr2010_294_36000.raw /home/data/rr1014/raw/os75/rr2010_294_43200.raw /home/data/rr1014/raw/os75/rr2010_294_50400.raw /home/data/rr1014/raw/os75/rr2010_294_57600.raw /home/data/rr1014/raw/os75/rr2010_294_64800.raw /home/data/rr1014/raw/os75/rr2010_294_72000.raw /home/data/rr1014/raw/os75/rr2010_294_79200.raw /home/data/rr1014/raw/os75/rr2010_295_00000.raw /home/data/rr1014/raw/os75/rr2010_295_07200.raw /home/data/rr1014/raw/os75/rr2010_295_14400.raw /home/data/rr1014/raw/os75/rr2010_295_21600.raw /home/data/rr1014/raw/os75/rr2010_295_28800.raw 2010-10-23 08:35:08,216 DEBUG quick_setup load/ldcodas.tmp exists 2010-10-23 08:35:08,216 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,216 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/load 2010-10-23 08:35:08,217 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,217 DEBUG quick_subs in /home/data/rr1014/proc/os75nb/load 2010-10-23 08:35:08,217 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021'] 2010-10-23 08:35:08,218 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022'] 2010-10-23 08:35:08,218 DEBUG quick_subs starttime is 2010/10/23 02:53:44 2010-10-23 08:35:08,218 DEBUG quick_subs RESETTING thisload_time_range 2010-10-23 08:35:08,218 DEBUG quick_subs time range of data to be loaded: 2010/10/23 02:53:44 to 2010/10/23 08:30:52 2010-10-23 08:35:08,218 DEBUG quick_subs data startdd 295.120648 data enddd 295.354769 2010-10-23 08:35:08,218 DEBUG quick_subs about to load from these cmd files ['ens_blk022.cmd'] 2010-10-23 08:35:08,219 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_rr DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2010 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk022.cmd 2010-10-23 08:35:08,219 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2010-10-23 08:35:08,240 DEBUG quick_subs removing a_rrdir.blk 2010-10-23 08:35:08,240 DEBUG quick_subs about to run mkblkdir 2010-10-23 08:35:08,240 DEBUG quick_subs database still exists; rerunning mkdirblk 2010-10-23 08:35:08,240 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2010-10-23 08:35:08,248 DEBUG quick_subs database passes. 2010-10-23 08:35:08,249 DEBUG quick_subs writing time range from a_rr.lst to a_rr.tr 2010-10-23 08:35:08,249 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,249 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,249 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,249 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,250 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,250 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 08:30:33 2010-10-23 08:35:08,250 DEBUG quick_subs dd0: 284.402512 dd1: 295.354549 2010-10-23 08:35:08,250 DEBUG quick_subs writing time range from a_rr.lst to a_rr.tr 2010-10-23 08:35:08,250 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,250 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,250 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,251 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2010-10-23 08:35:08,251 DEBUG quick_subs extracting time range 2010-10-23 08:35:08,251 DEBUG quick_subs start_end_time 2010/10/12 09:39:37 to 2010/10/23 08:30:33 2010-10-23 08:35:08,251 DEBUG quick_subs dd0: 284.402512 dd1: 295.354549 2010-10-23 08:35:08,251 DEBUG quick_adcp loaded_time_range is 2010/10/12 09:39:37 to 2010/10/23 08:30:33 2010-10-23 08:35:08,252 DEBUG quick_adcp (284.402512 to 295.354549) 2010-10-23 08:35:08,252 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,252 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/adcpdb 2010-10-23 08:35:08,252 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,252 DEBUG quick_subs dbname: a_rr output: a_rr.cnh time_ranges: all 2010-10-23 08:35:08,252 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2010-10-23 08:35:08,274 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2010-10-23 08:35:08,274 DEBUG quick_run executing commands from /home/data/rr1014/proc/os75nb/edit 2010-10-23 08:35:08,274 DEBUG quick_run setup.m exists. not replacing 2010-10-23 08:35:08,274 DEBUG quick_run asetup.m exists. not replacing 2010-10-23 08:35:08,274 DEBUG quick_run aflagit_setup.m exists. not replacing 2010-10-23 08:35:08,274 DEBUG quick_run ------------ step 4: run setflags ------------- 2010-10-23 08:35:08,274 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,274 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/edit 2010-10-23 08:35:08,275 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,275 DEBUG quick_subs dbname: ../adcpdb/a_rr pg_min: 50 set_range_bit time_ranges: all 2010-10-23 08:35:08,275 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-23 08:35:08,318 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2010-10-23 08:35:08,318 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,319 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:08,319 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,321 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2010-10-23 08:35:08,322 DEBUG quick_run hcorr_inst is ashtech 2010-10-23 08:35:08,322 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2010-10-23 08:35:08,322 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,322 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/rotate 2010-10-23 08:35:08,322 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,322 DEBUG quick_subs dbname: ../../adcpdb/a_rr output: scn.hdg step_size= 1 year_base= 2010 time_ranges: all 2010-10-23 08:35:08,322 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2010-10-23 08:35:08,355 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:08,355 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/rotate 2010-10-23 08:35:08,355 DEBUG quick_setup running python command "method" 2010-10-23 08:35:08,593 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2010; cruiseid = 'rr1014'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'ashtech',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2010-10-23 08:35:10,256 DEBUG quick_run ------------ step 7: rotate ------------- 2010-10-23 08:35:10,256 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:10,257 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/rotate 2010-10-23 08:35:10,257 DEBUG quick_setup running python command "method" 2010-10-23 08:35:10,293 DEBUG quick_subs last rotated time from log file: 2010/10/23 08:00:39 2010-10-23 08:35:10,293 DEBUG quick_subs time range of currently loaded data: 2010/10/12 09:39:37 to 2010/10/23 08:30:33 2010-10-23 08:35:10,293 DEBUG quick_subs (284.402512 to 295.354549) 2010-10-23 08:35:10,294 DEBUG quick_setup cal/rotate/rotate.tmp exists 2010-10-23 08:35:10,294 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:10,294 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/rotate 2010-10-23 08:35:10,294 DEBUG quick_setup running python command "method" 2010-10-23 08:35:10,295 DEBUG quick_subs DB_NAME: ../../adcpdb/a_rr LOG_FILE: rotate.log TIME_RANGE: 2010/10/23 02:53:44 to 2010/10/23 08:30:52 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2010 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2010-10-23 08:35:10,295 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2010-10-23 08:35:10,299 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-23 08:35:10,300 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-23 08:35:10,300 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:10,300 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:10,300 DEBUG quick_setup running python command "method" 2010-10-23 08:35:10,300 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/12 09:39:37 to 2010/10/23 08:30:33 /* the whole time range */ 2010-10-23 08:35:10,300 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-23 08:35:10,368 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-23 08:35:10,368 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:10,368 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:10,368 DEBUG quick_setup running python command "method" 2010-10-23 08:35:10,368 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.nav fix_file: a_rr.gps output: a_rr.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-23 08:35:10,368 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-23 08:35:10,418 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-23 08:35:10,418 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-23 08:35:10,418 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:10,418 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:10,419 DEBUG quick_setup running python command "method" 2010-10-23 08:35:10,419 DEBUG quick_subs reference_file: a_rr.nav refabs_output: a_rr.ref output: a_rr.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-23 08:35:10,419 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-23 08:35:10,662 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:10,663 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:10,663 DEBUG quick_setup running python command "method" 2010-10-23 08:35:10,663 DEBUG call_matlab --> clear all 2010-10-23 08:35:10,693 DEBUG call_matlab <-- >> 2010-10-23 08:35:10,693 DEBUG call_matlab --> close all 2010-10-23 08:35:10,748 DEBUG call_matlab <-- >> 2010-10-23 08:35:10,749 DEBUG call_matlab --> cd /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:10,750 DEBUG call_matlab <-- >> 2010-10-23 08:35:10,751 DEBUG call_matlab --> refsm 2010-10-23 08:35:11,891 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_rr opened Searching CODAS database ==> ../adcpdb/a_rr for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3134 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2010-10-23 08:35:12,315 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-23 08:35:12,315 DEBUG quick_setup nav/putnav.tmp exists 2010-10-23 08:35:12,315 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:12,316 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:12,316 DEBUG quick_setup running python command "method" 2010-10-23 08:35:12,316 DEBUG quick_subs dbname: ../adcpdb/a_rr position_file: refsm.sm year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-23 08:35:12,316 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-23 08:35:12,395 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2010-10-23 08:35:12,396 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:12,396 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:12,396 DEBUG quick_setup running python command "method" 2010-10-23 08:35:12,397 DEBUG quick_subs Created callrtmp.m 2010-10-23 08:35:12,397 DEBUG call_matlab --> clear all 2010-10-23 08:35:12,404 DEBUG call_matlab <-- >> 2010-10-23 08:35:12,404 DEBUG call_matlab --> close all 2010-10-23 08:35:12,444 DEBUG call_matlab <-- >> 2010-10-23 08:35:12,444 DEBUG call_matlab --> cd /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:12,445 DEBUG call_matlab <-- >> 2010-10-23 08:35:12,446 DEBUG call_matlab --> callrtmp_tmp 2010-10-23 08:35:13,659 DEBUG call_matlab <-- cruise = rr1014 cruise = rr1014 cruise = rr1014 cruise = rr1014 cruise = rr1014 cruise = rr1014 No data available. >> 2010-10-23 08:35:13,659 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2010-10-23 08:35:13,659 DEBUG quick_run find profile flags ------------ *** ------------- 2010-10-23 08:35:13,659 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:13,659 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/edit 2010-10-23 08:35:13,660 DEBUG quick_setup running python command "method" 2010-10-23 08:35:14,613 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2010-10-23 08:35:14,613 DEBUG quick_run starting in: /home/data/rr1014/proc/os75nb 2010-10-23 08:35:14,613 DEBUG quick_run executing commands from: edit 2010-10-23 08:35:14,615 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_rr abadbin_tmp.asc 2010-10-23 08:35:14,622 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_rr 2010-10-23 08:35:14,628 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2010-10-23 08:35:14,670 DEBUG quick_run changing directories back to /home/data/rr1014/proc/os75nb 2010-10-23 08:35:14,670 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2010-10-23 08:35:14,670 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2010-10-23 08:35:14,670 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-23 08:35:14,671 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:14,671 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:14,671 DEBUG quick_setup running python command "method" 2010-10-23 08:35:14,671 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/12 09:39:37 to 2010/10/23 08:30:33 /* the whole time range */ 2010-10-23 08:35:14,671 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-23 08:35:14,737 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2010-10-23 08:35:14,737 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:14,738 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:14,738 DEBUG quick_setup running python command "method" 2010-10-23 08:35:14,738 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.nav fix_file: a_rr.gps output: a_rr.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 10 2010-10-23 08:35:14,738 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2010-10-23 08:35:14,787 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2010-10-23 08:35:14,787 DEBUG quick_setup nav/smoothr.tmp exists 2010-10-23 08:35:14,787 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:14,787 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:14,787 DEBUG quick_setup running python command "method" 2010-10-23 08:35:14,787 DEBUG quick_subs reference_file: a_rr.nav refabs_output: a_rr.ref output: a_rr.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2010-10-23 08:35:14,788 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2010-10-23 08:35:15,032 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:15,032 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:15,032 DEBUG quick_setup running python command "method" 2010-10-23 08:35:15,032 DEBUG call_matlab --> clear all 2010-10-23 08:35:15,042 DEBUG call_matlab <-- >> 2010-10-23 08:35:15,043 DEBUG call_matlab --> close all 2010-10-23 08:35:15,080 DEBUG call_matlab <-- >> 2010-10-23 08:35:15,081 DEBUG call_matlab --> cd /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:15,082 DEBUG call_matlab <-- >> 2010-10-23 08:35:15,082 DEBUG call_matlab --> refsm 2010-10-23 08:35:16,185 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_rr opened Searching CODAS database ==> ../adcpdb/a_rr for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3134 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2010-10-23 08:35:16,186 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2010-10-23 08:35:16,186 DEBUG quick_setup nav/putnav.tmp exists 2010-10-23 08:35:16,186 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:16,186 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:16,186 DEBUG quick_setup running python command "method" 2010-10-23 08:35:16,186 DEBUG quick_subs dbname: ../adcpdb/a_rr position_file: refsm.sm year_base= 2010 tolerance= 5 navigation_sources: gps end 2010-10-23 08:35:16,186 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2010-10-23 08:35:16,260 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2010-10-23 08:35:16,261 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:16,261 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:16,261 DEBUG quick_setup running python command "method" 2010-10-23 08:35:16,262 DEBUG quick_subs Created callrtmp.m 2010-10-23 08:35:16,262 DEBUG call_matlab --> clear all 2010-10-23 08:35:16,268 DEBUG call_matlab <-- >> 2010-10-23 08:35:16,268 DEBUG call_matlab --> close all 2010-10-23 08:35:16,307 DEBUG call_matlab <-- >> 2010-10-23 08:35:16,307 DEBUG call_matlab --> cd /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:16,309 DEBUG call_matlab <-- >> 2010-10-23 08:35:16,309 DEBUG call_matlab --> callrtmp_tmp 2010-10-23 08:35:18,024 DEBUG call_matlab <-- cruise = rr1014 cruise = rr1014 cruise = rr1014 cruise = rr1014 cruise = rr1014 cruise = rr1014 No data available. >> 2010-10-23 08:35:18,024 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2010-10-23 08:35:18,024 DEBUG quick_setup edit/lst_temp.tmp exists 2010-10-23 08:35:18,025 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,025 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/edit 2010-10-23 08:35:18,025 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,025 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr.tem step_size= 1 year_base= 2010 time_ranges: all 2010-10-23 08:35:18,025 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2010-10-23 08:35:18,064 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,064 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/edit 2010-10-23 08:35:18,064 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,681 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2010-10-23 08:35:18,681 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2010-10-23 08:35:18,681 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,681 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/botmtrk 2010-10-23 08:35:18,681 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,681 DEBUG quick_subs dbname: ../../adcpdb/a_rr output: a_rr.btm step_size= 1 year_base= 2010 time_ranges: 2010/10/12 09:39:37 to 2010/10/23 08:30:33 /* whole time range */ 2010-10-23 08:35:18,682 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2010-10-23 08:35:18,697 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2010-10-23 08:35:18,698 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,698 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/botmtrk 2010-10-23 08:35:18,698 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,698 DEBUG quick_subs fix_file_type: simple reference_file: a_rr.btm fix_file: ../../nav/a_rr.gps output: a_rr.ref year_base= 2010 ensemble_length= 300 gap_tolerance= 60 2010-10-23 08:35:18,698 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2010-10-23 08:35:18,702 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,702 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/botmtrk 2010-10-23 08:35:18,702 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,702 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_rr.ref','a_rr.btm',... 'ADCP rr1014 step size 1 ', 1); 2010-10-23 08:35:18,822 DEBUG quick_setup nav/as_nav.tmp exists 2010-10-23 08:35:18,822 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,822 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/nav 2010-10-23 08:35:18,822 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,823 DEBUG quick_subs dbname: ../adcpdb/a_rr output: a_rr step_size: 1 ndepth: 20 time_ranges: separate year_base= 2010 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2010/10/12 09:39:37 to 2010/10/23 08:30:33 /* the whole time range */ 2010-10-23 08:35:18,823 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2010-10-23 08:35:18,885 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2010-10-23 08:35:18,885 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,885 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/watertrk 2010-10-23 08:35:18,886 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,886 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_rr.gps reference_file: ../../nav/a_rr.nav output_file: a_rr_7.cal year_base= 2010 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2010-10-23 08:35:18,886 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2010-10-23 08:35:18,909 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:18,909 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/cal/watertrk 2010-10-23 08:35:18,909 DEBUG quick_setup running python command "method" 2010-10-23 08:35:18,909 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_rr_7.cal', 'ADCP rr1014 7ens') 2010-10-23 08:35:18,910 DEBUG call_matlab --> clear all 2010-10-23 08:35:18,914 DEBUG call_matlab <-- >> 2010-10-23 08:35:18,914 DEBUG call_matlab --> close all 2010-10-23 08:35:18,955 DEBUG call_matlab <-- >> 2010-10-23 08:35:18,955 DEBUG call_matlab --> cd /home/data/rr1014/proc/os75nb/cal/watertrk 2010-10-23 08:35:18,956 DEBUG call_matlab <-- >> 2010-10-23 08:35:18,957 DEBUG call_matlab --> calladcpcal_tmp 2010-10-23 08:35:19,768 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [55x11 double] igood: [54x1 double] >> 2010-10-23 08:35:19,769 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2010-10-23 08:35:19,769 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:19,769 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/vector 2010-10-23 08:35:19,769 DEBUG quick_setup running python command "method" 2010-10-23 08:35:19,769 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_rr.tmp 2010-10-23 08:35:19,774 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:19,774 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/vector 2010-10-23 08:35:19,774 DEBUG quick_setup running python command "method" 2010-10-23 08:35:19,774 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2010-10-23 08:35:19,863 DEBUG quick_asect done making vector matfiles 2010-10-23 08:35:19,864 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:19,864 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/contour 2010-10-23 08:35:19,864 DEBUG quick_setup running python command "method" 2010-10-23 08:35:19,864 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_rr.tmp 2010-10-23 08:35:19,871 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:19,871 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/contour 2010-10-23 08:35:19,871 DEBUG quick_setup running python command "method" 2010-10-23 08:35:19,872 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2010-10-23 08:35:19,988 DEBUG quick_setup starting in /home/data/rr1014/proc/os75nb 2010-10-23 08:35:19,988 DEBUG quick_setup executing commands from /home/data/rr1014/proc/os75nb/contour 2010-10-23 08:35:19,988 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_rr 2010-10-23 08:35:20,324 DEBUG quick_asect done running getmat with "allbins" 2010-10-23 08:35:20,325 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2010-10-23 08:35:20,325 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2010-10-23 08:35:20,325 DEBUG root matfile is contour/contour_uv.mat 2010-10-23 08:35:20,330 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2010-10-23 08:35:20,330 DEBUG root matfile is vector/vector_uv.mat 2010-10-23 08:35:20,331 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2010-10-23 08:35:20,331 DEBUG root matfile is contour/contour_xy.mat 2010-10-23 08:35:20,331 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2010-10-23 08:35:20,332 DEBUG root matfile is vector/vector_xy.mat 2010-10-23 08:35:20,332 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2010-10-23 08:35:20,332 DEBUG root about to copy file edit/a_rr.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-23 08:35:20,333 INFO root copying edit/a_rr.tem to /home/adcp/www/data/os75nb_temp.asc 2010-10-23 08:35:20,333 INFO root Ending quick_adcp.py 2010-10-23 08:35:20,436 DEBUG quick_setup killed matlab engine