2009-05-12 18:32:28,610 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype nb --cfgbase MV0907 --cruisename MV0907 --instclass os --instname os75 --dbname a_mv --datatype uhdas --datadir /home/data/MV0907/raw/os75 --cfgpath /home/data/MV0907/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 2009-05-12 18:32:28,612 DEBUG quick_adcp progdir = /home/currents/programs 2009-05-12 18:32:28,612 DEBUG quick_adcp binos = lnx 2009-05-12 18:32:28,612 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-05-12 18:32:28,612 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-05-12 18:32:28,612 DEBUG quick_setup processing data logged with uhdas: 2009-05-12 18:32:28,612 DEBUG quick_setup datatype is uhdas 2009-05-12 18:32:28,612 DEBUG quick_setup pingtype is nb 2009-05-12 18:32:28,613 DEBUG quick_setup instclass is os 2009-05-12 18:32:28,613 DEBUG quick_setup no post-processing heading correction will be used 2009-05-12 18:32:28,613 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-05-12 18:32:28,613 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-05-12 18:32:28,613 DEBUG quick_setup ------- starting Matlab engine ------- 2009-05-12 18:32:28,613 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-05-12 18:32:28,616 DEBUG call_matlab starting to wait for initial prompt 2009-05-12 18:32:29,360 DEBUG call_matlab received initial prompt 2009-05-12 18:32:29,514 DEBUG quick_adcp cwd is /home/data/MV0907/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:32:29,515 DEBUG quick_adcp original fix file is a_mv.gps 2009-05-12 18:32:29,515 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-05-12 18:32:29,515 DEBUG quick_asect extracting matlab files for os75, nb pings 2009-05-12 18:32:29,663 DEBUG quick_subs found 65 files using wildcard expansion from "/home/data/MV0907/raw/os75/*.raw" 2009-05-12 18:32:29,664 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:29,664 DEBUG quick_adcp LASTFILES invoked. using only 65 files from end of filelist 2009-05-12 18:32:29,664 DEBUG quick_adcp using delblks = 1 2009-05-12 18:32:29,664 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:29,665 DEBUG quick_adcp Tue May 12 18:32:29 2009 running quick_adcp.py as follows: --cntfile /home/data/MV0907/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_mv cbasename contour dbname a_mv dbpath ../adcpdb deeper_boundaries [75, 125, 175, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850] firstdepth 29 gridnum 45 increment 20 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_mv allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase MV0907 cfgpath /home/data/MV0907/proc/os75nb/config cntfile /home/data/MV0907/proc/os75nb/os75nb_qpy.cnt commands None cruisename MV0907 data_def vmadcp.def datadir /home/data/MV0907/raw/os75 datafile_glob *.raw datatype uhdas dbname a_mv dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False filelist ['/home/data/MV0907/raw/os75/mv2009_126_39717.raw', '/home/data/MV0907/raw/os75/mv2009_126_43200.raw', '/home/data/MV0907/raw/os75/mv2009_126_50400.raw', '/home/data/MV0907/raw/os75/mv2009_126_57600.raw', '/home/data/MV0907/raw/os75/mv2009_126_64800.raw', '/home/data/MV0907/raw/os75/mv2009_126_72000.raw', '/home/data/MV0907/raw/os75/mv2009_126_79200.raw', '/home/data/MV0907/raw/os75/mv2009_127_00000.raw', '/home/data/MV0907/raw/os75/mv2009_127_07200.raw', '/home/data/MV0907/raw/os75/mv2009_127_14400.raw', '/home/data/MV0907/raw/os75/mv2009_127_21600.raw', '/home/data/MV0907/raw/os75/mv2009_127_28800.raw', '/home/data/MV0907/raw/os75/mv2009_127_36000.raw', '/home/data/MV0907/raw/os75/mv2009_127_43200.raw', '/home/data/MV0907/raw/os75/mv2009_127_50400.raw', '/home/data/MV0907/raw/os75/mv2009_127_57600.raw', '/home/data/MV0907/raw/os75/mv2009_127_64800.raw', '/home/data/MV0907/raw/os75/mv2009_127_72000.raw', '/home/data/MV0907/raw/os75/mv2009_127_79200.raw', '/home/data/MV0907/raw/os75/mv2009_128_00000.raw', '/home/data/MV0907/raw/os75/mv2009_128_07200.raw', '/home/data/MV0907/raw/os75/mv2009_128_14400.raw', '/home/data/MV0907/raw/os75/mv2009_128_21600.raw', '/home/data/MV0907/raw/os75/mv2009_128_28800.raw', '/home/data/MV0907/raw/os75/mv2009_128_36000.raw', '/home/data/MV0907/raw/os75/mv2009_128_43200.raw', '/home/data/MV0907/raw/os75/mv2009_128_50400.raw', '/home/data/MV0907/raw/os75/mv2009_128_57600.raw', '/home/data/MV0907/raw/os75/mv2009_128_64800.raw', '/home/data/MV0907/raw/os75/mv2009_128_72000.raw', '/home/data/MV0907/raw/os75/mv2009_128_79200.raw', '/home/data/MV0907/raw/os75/mv2009_129_00000.raw', '/home/data/MV0907/raw/os75/mv2009_129_07200.raw', '/home/data/MV0907/raw/os75/mv2009_129_14400.raw', '/home/data/MV0907/raw/os75/mv2009_129_21600.raw', '/home/data/MV0907/raw/os75/mv2009_129_28800.raw', '/home/data/MV0907/raw/os75/mv2009_129_36000.raw', '/home/data/MV0907/raw/os75/mv2009_129_43200.raw', '/home/data/MV0907/raw/os75/mv2009_129_50400.raw', '/home/data/MV0907/raw/os75/mv2009_129_57600.raw', '/home/data/MV0907/raw/os75/mv2009_129_64800.raw', '/home/data/MV0907/raw/os75/mv2009_129_72000.raw', '/home/data/MV0907/raw/os75/mv2009_129_79200.raw', '/home/data/MV0907/raw/os75/mv2009_130_00000.raw', '/home/data/MV0907/raw/os75/mv2009_130_07200.raw', '/home/data/MV0907/raw/os75/mv2009_130_14400.raw', '/home/data/MV0907/raw/os75/mv2009_130_21600.raw', '/home/data/MV0907/raw/os75/mv2009_130_28800.raw', '/home/data/MV0907/raw/os75/mv2009_130_36000.raw', '/home/data/MV0907/raw/os75/mv2009_130_43200.raw', '/home/data/MV0907/raw/os75/mv2009_130_50400.raw', '/home/data/MV0907/raw/os75/mv2009_130_57600.raw', '/home/data/MV0907/raw/os75/mv2009_130_64800.raw', '/home/data/MV0907/raw/os75/mv2009_130_72000.raw', '/home/data/MV0907/raw/os75/mv2009_130_79200.raw', '/home/data/MV0907/raw/os75/mv2009_131_00000.raw', '/home/data/MV0907/raw/os75/mv2009_131_07200.raw', '/home/data/MV0907/raw/os75/mv2009_131_14400.raw', '/home/data/MV0907/raw/os75/mv2009_131_21600.raw', '/home/data/MV0907/raw/os75/mv2009_131_28800.raw', '/home/data/MV0907/raw/os75/mv2009_131_36000.raw', '/home/data/MV0907/raw/os75/mv2009_131_43200.raw', '/home/data/MV0907/raw/os75/mv2009_131_50400.raw', '/home/data/MV0907/raw/os75/mv2009_131_57600.raw', '/home/data/MV0907/raw/os75/mv2009_131_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 29 fixfile a_mv.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_mv.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2009 procdir os75nb progdir /home/currents/programs quiet True rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/MV0907/raw/os75/mv2009_126_39717.raw', '/home/data/MV0907/raw/os75/mv2009_126_43200.raw', '/home/data/MV0907/raw/os75/mv2009_126_50400.raw', '/home/data/MV0907/raw/os75/mv2009_126_57600.raw', '/home/data/MV0907/raw/os75/mv2009_126_64800.raw', '/home/data/MV0907/raw/os75/mv2009_126_72000.raw', '/home/data/MV0907/raw/os75/mv2009_126_79200.raw', '/home/data/MV0907/raw/os75/mv2009_127_00000.raw', '/home/data/MV0907/raw/os75/mv2009_127_07200.raw', '/home/data/MV0907/raw/os75/mv2009_127_14400.raw', '/home/data/MV0907/raw/os75/mv2009_127_21600.raw', '/home/data/MV0907/raw/os75/mv2009_127_28800.raw', '/home/data/MV0907/raw/os75/mv2009_127_36000.raw', '/home/data/MV0907/raw/os75/mv2009_127_43200.raw', '/home/data/MV0907/raw/os75/mv2009_127_50400.raw', '/home/data/MV0907/raw/os75/mv2009_127_57600.raw', '/home/data/MV0907/raw/os75/mv2009_127_64800.raw', '/home/data/MV0907/raw/os75/mv2009_127_72000.raw', '/home/data/MV0907/raw/os75/mv2009_127_79200.raw', '/home/data/MV0907/raw/os75/mv2009_128_00000.raw', '/home/data/MV0907/raw/os75/mv2009_128_07200.raw', '/home/data/MV0907/raw/os75/mv2009_128_14400.raw', '/home/data/MV0907/raw/os75/mv2009_128_21600.raw', '/home/data/MV0907/raw/os75/mv2009_128_28800.raw', '/home/data/MV0907/raw/os75/mv2009_128_36000.raw', '/home/data/MV0907/raw/os75/mv2009_128_43200.raw', '/home/data/MV0907/raw/os75/mv2009_128_50400.raw', '/home/data/MV0907/raw/os75/mv2009_128_57600.raw', '/home/data/MV0907/raw/os75/mv2009_128_64800.raw', '/home/data/MV0907/raw/os75/mv2009_128_72000.raw', '/home/data/MV0907/raw/os75/mv2009_128_79200.raw', '/home/data/MV0907/raw/os75/mv2009_129_00000.raw', '/home/data/MV0907/raw/os75/mv2009_129_07200.raw', '/home/data/MV0907/raw/os75/mv2009_129_14400.raw', '/home/data/MV0907/raw/os75/mv2009_129_21600.raw', '/home/data/MV0907/raw/os75/mv2009_129_28800.raw', '/home/data/MV0907/raw/os75/mv2009_129_36000.raw', '/home/data/MV0907/raw/os75/mv2009_129_43200.raw', '/home/data/MV0907/raw/os75/mv2009_129_50400.raw', '/home/data/MV0907/raw/os75/mv2009_129_57600.raw', '/home/data/MV0907/raw/os75/mv2009_129_64800.raw', '/home/data/MV0907/raw/os75/mv2009_129_72000.raw', '/home/data/MV0907/raw/os75/mv2009_129_79200.raw', '/home/data/MV0907/raw/os75/mv2009_130_00000.raw', '/home/data/MV0907/raw/os75/mv2009_130_07200.raw', '/home/data/MV0907/raw/os75/mv2009_130_14400.raw', '/home/data/MV0907/raw/os75/mv2009_130_21600.raw', '/home/data/MV0907/raw/os75/mv2009_130_28800.raw', '/home/data/MV0907/raw/os75/mv2009_130_36000.raw', '/home/data/MV0907/raw/os75/mv2009_130_43200.raw', '/home/data/MV0907/raw/os75/mv2009_130_50400.raw', '/home/data/MV0907/raw/os75/mv2009_130_57600.raw', '/home/data/MV0907/raw/os75/mv2009_130_64800.raw', '/home/data/MV0907/raw/os75/mv2009_130_72000.raw', '/home/data/MV0907/raw/os75/mv2009_130_79200.raw', '/home/data/MV0907/raw/os75/mv2009_131_00000.raw', '/home/data/MV0907/raw/os75/mv2009_131_07200.raw', '/home/data/MV0907/raw/os75/mv2009_131_14400.raw', '/home/data/MV0907/raw/os75/mv2009_131_21600.raw', '/home/data/MV0907/raw/os75/mv2009_131_28800.raw', '/home/data/MV0907/raw/os75/mv2009_131_36000.raw', '/home/data/MV0907/raw/os75/mv2009_131_43200.raw', '/home/data/MV0907/raw/os75/mv2009_131_50400.raw', '/home/data/MV0907/raw/os75/mv2009_131_57600.raw', '/home/data/MV0907/raw/os75/mv2009_131_64800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:32:29,665 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-05-12 18:32:29,665 DEBUG quick_run scanning files for time ranges... 2009-05-12 18:32:29,666 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb/scan 2009-05-12 18:32:29,666 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/scan 2009-05-12 18:32:29,666 DEBUG quick_setup running python command "method" 2009-05-12 18:32:29,666 DEBUG call_matlab --> clear all 2009-05-12 18:32:29,670 DEBUG call_matlab <-- >> 2009-05-12 18:32:29,670 DEBUG call_matlab --> close all 2009-05-12 18:32:29,709 DEBUG call_matlab <-- >> 2009-05-12 18:32:29,709 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75nb/scan 2009-05-12 18:32:29,711 DEBUG call_matlab <-- >> 2009-05-12 18:32:29,711 DEBUG call_matlab --> scan_tmp 2009-05-12 18:32:30,241 DEBUG call_matlab <-- getting config files from "/home/data/MV0907/proc/os75nb/config" running "MV0907_cfg.m" running "MV0907_proc.m" writing scan info to a_mv.scn >> 2009-05-12 18:32:30,242 DEBUG quick_run writing time range from a_mv.scn to a_mv.tr 2009-05-12 18:32:30,242 DEBUG quick_run getting scan time range 2009-05-12 18:32:30,242 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,242 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/scan 2009-05-12 18:32:30,242 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,242 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,243 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,244 DEBUG quick_subs start_end_time 2009/05/07 11:02:03 to 2009/05/12 18:32:25 2009-05-12 18:32:30,244 DEBUG quick_subs dd0: 126.459757 dd1: 131.772512 2009-05-12 18:32:30,244 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,244 DEBUG quick_adcp looking for database with adcpdb/a_mv*.blk 2009-05-12 18:32:30,245 DEBUG quick_adcp database found: listing blocks 2009-05-12 18:32:30,245 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:30,245 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:30,245 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:30,245 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:30,254 DEBUG quick_subs database passes. 2009-05-12 18:32:30,254 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:30,254 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,254 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,254 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,254 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,255 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,255 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:30,255 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:30,255 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:30,255 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,255 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,256 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,256 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,256 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,256 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:30,256 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:30,256 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-05-12 18:32:30,257 DEBUG quick_adcp origdb_time_range is 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:30,257 DEBUG quick_adcp (126.463310 to 131.751007) 2009-05-12 18:32:30,257 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-05-12 18:32:30,257 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:32:30,257 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv011.blk', 'adcpdb/a_mvdir.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:32:30,257 DEBUG quick_subs length is 12 2009-05-12 18:32:30,258 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:30,258 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:30,258 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:30,258 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:30,266 DEBUG quick_subs database passes. 2009-05-12 18:32:30,266 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:30,266 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,266 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,267 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,267 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,267 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,267 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:30,267 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:30,268 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,268 DEBUG quick_subs reading time range 2009-05-12 18:32:30,268 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:30,268 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:30,268 INFO quick_subs Tue May 12 18:32:30 2009 2009-05-12 18:32:30,268 INFO quick_subs checking database time range by listblk 2009-05-12 18:32:30,269 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:30,269 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:30,269 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:30,269 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:30,276 DEBUG quick_subs database passes. 2009-05-12 18:32:30,277 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:30,277 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,277 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,277 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,277 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,278 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,278 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:30,278 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:30,279 INFO quick_subs found line /* 0 n= 146 a_mv001.blk */ 2009/05/07 11:07:10 to 2009/05/07 23:20:59 2009-05-12 18:32:30,279 INFO quick_subs found line /* 1 n= 146 a_mv002.blk */ 2009/05/07 23:26:03 to 2009/05/08 11:39:55 2009-05-12 18:32:30,280 INFO quick_subs found line /* 2 n= 146 a_mv003.blk */ 2009/05/08 11:44:58 to 2009/05/08 23:58:36 2009-05-12 18:32:30,280 INFO quick_subs found line /* 3 n= 146 a_mv004.blk */ 2009/05/09 00:03:40 to 2009/05/09 12:18:41 2009-05-12 18:32:30,280 INFO quick_subs found line /* 4 n= 146 a_mv005.blk */ 2009/05/09 12:23:45 to 2009/05/10 00:38:39 2009-05-12 18:32:30,280 INFO quick_subs found line /* 5 n= 146 a_mv006.blk */ 2009/05/10 00:43:44 to 2009/05/10 12:58:26 2009-05-12 18:32:30,280 INFO quick_subs found line /* 6 n= 146 a_mv007.blk */ 2009/05/10 13:03:29 to 2009/05/11 01:16:52 2009-05-12 18:32:30,280 INFO quick_subs found line /* 7 n= 146 a_mv008.blk */ 2009/05/11 01:21:55 to 2009/05/11 13:35:40 2009-05-12 18:32:30,280 INFO quick_subs found line /* 8 n= 146 a_mv009.blk */ 2009/05/11 13:40:43 to 2009/05/12 01:54:53 2009-05-12 18:32:30,280 INFO quick_subs found line /* 9 n= 146 a_mv010.blk */ 2009/05/12 01:59:53 to 2009/05/12 14:13:46 2009-05-12 18:32:30,281 INFO quick_subs found line /* 10 n= 45 a_mv011.blk */ 2009/05/12 14:18:48 to 2009/05/12 18:01:27 2009-05-12 18:32:30,281 INFO quick_subs scan data start at 126.4597569 2009-05-12 18:32:30,281 INFO quick_subs scan time range: 2009/05/07 11:02:03 to 2009/05/12 18:32:25 2009-05-12 18:32:30,281 INFO quick_subs codasdb ends at 131.7510069 (2009/05/12 18:01:27) 2009-05-12 18:32:30,281 DEBUG quick_subs ... changed dirs, in /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,281 DEBUG quick_subs deleting these files: ['a_mv011.blk'] 2009-05-12 18:32:30,282 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:32:30,282 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:32:30,282 DEBUG quick_subs length is 10 2009-05-12 18:32:30,282 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:30,282 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:30,282 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:30,290 DEBUG quick_subs database passes. 2009-05-12 18:32:30,290 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:30,291 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,291 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,291 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,291 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,291 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,292 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 14:13:46 2009-05-12 18:32:30,292 DEBUG quick_subs dd0: 126.463310 dd1: 131.592894 2009-05-12 18:32:30,292 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,292 DEBUG quick_subs reading time range 2009-05-12 18:32:30,292 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 14:13:46 2009-05-12 18:32:30,292 DEBUG quick_subs dd0: 126.463310 dd1: 131.592894 2009-05-12 18:32:30,292 DEBUG quick_subs codas database currently goes from 2009/05/07 11:07:10 to 2009/05/12 14:13:46 2009-05-12 18:32:30,292 DEBUG quick_subs (126.463310 to 131.592894) 2009-05-12 18:32:30,293 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010 2009-05-12 18:32:30,294 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 2009-05-12 18:32:30,294 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:32:30,294 DEBUG quick_subs checked: unloaded blkstrs: ['011'] 2009-05-12 18:32:30,294 DEBUG quick_subs first unloaded file is load/ens_blk011.cmd 2009-05-12 18:32:30,294 DEBUG quick_subs data goes from 2009/05/12 14:18:48 to 2009/05/12 18:32:25 2009-05-12 18:32:30,294 DEBUG quick_subs (131.596389 to 131.772512) 2009-05-12 18:32:30,295 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:30,295 INFO quick_run Tue May 12 18:32:30 2009 2009-05-12 18:32:30,295 INFO quick_run about to load uhdas files 2009-05-12 18:32:30,295 INFO quick_run /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:30,295 DEBUG quick_setup load/ldcodas.tmp exists 2009-05-12 18:32:30,295 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,295 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/load 2009-05-12 18:32:30,295 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,296 DEBUG quick_subs in /home/data/MV0907/proc/os75nb/load 2009-05-12 18:32:30,296 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:32:30,296 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011'] 2009-05-12 18:32:30,296 DEBUG quick_subs starttime is 2009/05/12 14:18:48 2009-05-12 18:32:30,297 DEBUG quick_subs RESETTING thisload_time_range 2009-05-12 18:32:30,297 DEBUG quick_subs time range of data to be loaded: 2009/05/12 14:18:48 to 2009/05/12 18:32:25 2009-05-12 18:32:30,297 DEBUG quick_subs data startdd 131.596389 data enddd 131.772512 2009-05-12 18:32:30,297 DEBUG quick_subs about to load from these cmd files ['ens_blk011.cmd'] 2009-05-12 18:32:30,297 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mv DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk011.cmd 2009-05-12 18:32:30,297 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-05-12 18:32:30,311 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:30,312 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:30,312 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:30,312 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:30,320 DEBUG quick_subs database passes. 2009-05-12 18:32:30,321 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:30,321 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,321 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,321 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,321 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,321 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,322 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:30,322 DEBUG quick_subs dd0: 126.463310 dd1: 131.772106 2009-05-12 18:32:30,322 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:30,322 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,322 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,322 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,322 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:30,323 DEBUG quick_subs extracting time range 2009-05-12 18:32:30,323 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:30,323 DEBUG quick_subs dd0: 126.463310 dd1: 131.772106 2009-05-12 18:32:30,323 DEBUG quick_adcp loaded_time_range is 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:30,323 DEBUG quick_adcp (126.463310 to 131.772106) 2009-05-12 18:32:30,323 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,324 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/adcpdb 2009-05-12 18:32:30,324 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,324 DEBUG quick_subs dbname: a_mv output: a_mv.cnh time_ranges: all 2009-05-12 18:32:30,324 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-05-12 18:32:30,337 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-05-12 18:32:30,337 DEBUG quick_run executing commands from /home/data/MV0907/proc/os75nb/edit 2009-05-12 18:32:30,337 DEBUG quick_run setup.m exists. not replacing 2009-05-12 18:32:30,337 DEBUG quick_run asetup.m exists. not replacing 2009-05-12 18:32:30,337 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-05-12 18:32:30,337 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-05-12 18:32:30,338 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,338 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/edit 2009-05-12 18:32:30,338 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,338 DEBUG quick_subs dbname: ../adcpdb/a_mv pg_min: 50 set_range_bit time_ranges: all 2009-05-12 18:32:30,338 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:32:30,361 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-05-12 18:32:30,362 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,362 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:30,362 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,364 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-05-12 18:32:30,364 DEBUG quick_run hcorr_inst is ashtech 2009-05-12 18:32:30,364 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-05-12 18:32:30,364 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,364 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/rotate 2009-05-12 18:32:30,365 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,365 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:32:30,365 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-05-12 18:32:30,381 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:30,381 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/rotate 2009-05-12 18:32:30,382 DEBUG quick_setup running python command "method" 2009-05-12 18:32:30,568 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'MV0907'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'ashtech',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-05-12 18:32:32,174 DEBUG quick_run ------------ step 7: rotate ------------- 2009-05-12 18:32:32,174 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:32,174 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/rotate 2009-05-12 18:32:32,174 DEBUG quick_setup running python command "method" 2009-05-12 18:32:32,190 DEBUG quick_subs last rotated time from log file: 2009/05/12 18:01:45 2009-05-12 18:32:32,191 DEBUG quick_subs time range of currently loaded data: 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:32,191 DEBUG quick_subs (126.463310 to 131.772106) 2009-05-12 18:32:32,191 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-05-12 18:32:32,191 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:32,191 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/rotate 2009-05-12 18:32:32,192 DEBUG quick_setup running python command "method" 2009-05-12 18:32:32,192 DEBUG quick_subs DB_NAME: ../../adcpdb/a_mv LOG_FILE: rotate.log TIME_RANGE: 2009/05/12 14:18:48 to 2009/05/12 18:32:25 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-05-12 18:32:32,192 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-05-12 18:32:32,197 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:32:32,197 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:32,197 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:32,197 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:32,197 DEBUG quick_setup running python command "method" 2009-05-12 18:32:32,197 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* the whole time range */ 2009-05-12 18:32:32,198 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:32,230 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:32:32,231 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:32,231 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:32,231 DEBUG quick_setup running python command "method" 2009-05-12 18:32:32,231 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:32:32,232 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:32:32,257 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:32:32,258 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:32:32,258 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:32,258 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:32,258 DEBUG quick_setup running python command "method" 2009-05-12 18:32:32,258 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:32:32,259 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:32:32,381 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:32,381 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:32,382 DEBUG quick_setup running python command "method" 2009-05-12 18:32:32,382 DEBUG call_matlab --> clear all 2009-05-12 18:32:32,411 DEBUG call_matlab <-- >> 2009-05-12 18:32:32,411 DEBUG call_matlab --> close all 2009-05-12 18:32:32,466 DEBUG call_matlab <-- >> 2009-05-12 18:32:32,466 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:32,468 DEBUG call_matlab <-- >> 2009-05-12 18:32:32,468 DEBUG call_matlab --> refsm 2009-05-12 18:32:33,012 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1511 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-05-12 18:32:33,012 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:32:33,012 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:32:33,012 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:33,012 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:33,012 DEBUG quick_setup running python command "method" 2009-05-12 18:32:33,013 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:32:33,013 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:32:33,052 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:32:33,052 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:33,053 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:33,053 DEBUG quick_setup running python command "method" 2009-05-12 18:32:33,054 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:32:33,054 DEBUG call_matlab --> clear all 2009-05-12 18:32:33,061 DEBUG call_matlab <-- >> 2009-05-12 18:32:33,061 DEBUG call_matlab --> close all 2009-05-12 18:32:33,100 DEBUG call_matlab <-- >> 2009-05-12 18:32:33,100 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:33,102 DEBUG call_matlab <-- >> 2009-05-12 18:32:33,103 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:32:33,974 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:32:33,974 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-05-12 18:32:33,974 DEBUG quick_run find profile flags ------------ *** ------------- 2009-05-12 18:32:33,974 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:33,975 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/edit 2009-05-12 18:32:33,975 DEBUG quick_setup running python command "method" 2009-05-12 18:32:34,863 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-05-12 18:32:34,863 DEBUG quick_run starting in: /home/data/MV0907/proc/os75nb 2009-05-12 18:32:34,863 DEBUG quick_run executing commands from: edit 2009-05-12 18:32:34,865 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_mv abadbin_tmp.asc 2009-05-12 18:32:34,871 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_mv 2009-05-12 18:32:34,876 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:32:34,897 DEBUG quick_run changing directories back to /home/data/MV0907/proc/os75nb 2009-05-12 18:32:34,898 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-05-12 18:32:34,898 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:32:34,898 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:34,898 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:34,898 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:34,898 DEBUG quick_setup running python command "method" 2009-05-12 18:32:34,899 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* the whole time range */ 2009-05-12 18:32:34,899 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:34,932 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:32:34,933 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:34,933 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:34,933 DEBUG quick_setup running python command "method" 2009-05-12 18:32:34,933 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:32:34,933 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:32:34,959 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:32:34,959 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:32:34,959 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:34,959 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:34,960 DEBUG quick_setup running python command "method" 2009-05-12 18:32:34,960 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:32:34,960 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:32:35,083 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:35,083 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:35,083 DEBUG quick_setup running python command "method" 2009-05-12 18:32:35,083 DEBUG call_matlab --> clear all 2009-05-12 18:32:35,094 DEBUG call_matlab <-- >> 2009-05-12 18:32:35,094 DEBUG call_matlab --> close all 2009-05-12 18:32:35,133 DEBUG call_matlab <-- >> 2009-05-12 18:32:35,133 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:35,135 DEBUG call_matlab <-- >> 2009-05-12 18:32:35,135 DEBUG call_matlab --> refsm 2009-05-12 18:32:35,661 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1511 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-05-12 18:32:35,661 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:32:35,661 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:32:35,662 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:35,662 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:35,662 DEBUG quick_setup running python command "method" 2009-05-12 18:32:35,662 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:32:35,662 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:32:35,701 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:32:35,701 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:35,702 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:35,702 DEBUG quick_setup running python command "method" 2009-05-12 18:32:35,703 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:32:35,703 DEBUG call_matlab --> clear all 2009-05-12 18:32:35,709 DEBUG call_matlab <-- >> 2009-05-12 18:32:35,709 DEBUG call_matlab --> close all 2009-05-12 18:32:35,748 DEBUG call_matlab <-- >> 2009-05-12 18:32:35,748 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:35,750 DEBUG call_matlab <-- >> 2009-05-12 18:32:35,750 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:32:36,595 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:32:36,596 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-05-12 18:32:36,596 DEBUG quick_setup edit/lst_temp.tmp exists 2009-05-12 18:32:36,596 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:36,596 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/edit 2009-05-12 18:32:36,596 DEBUG quick_setup running python command "method" 2009-05-12 18:32:36,596 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv.tem step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:32:36,596 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-05-12 18:32:36,616 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:36,617 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/edit 2009-05-12 18:32:36,617 DEBUG quick_setup running python command "method" 2009-05-12 18:32:37,206 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-05-12 18:32:37,206 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-05-12 18:32:37,206 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:37,206 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/botmtrk 2009-05-12 18:32:37,207 DEBUG quick_setup running python command "method" 2009-05-12 18:32:37,207 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: a_mv.btm step_size= 1 year_base= 2009 time_ranges: 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* whole time range */ 2009-05-12 18:32:37,207 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-05-12 18:32:37,216 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-05-12 18:32:37,216 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:37,216 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/botmtrk 2009-05-12 18:32:37,216 DEBUG quick_setup running python command "method" 2009-05-12 18:32:37,216 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.btm fix_file: ../../nav/a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-05-12 18:32:37,217 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-05-12 18:32:37,220 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:37,221 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/botmtrk 2009-05-12 18:32:37,221 DEBUG quick_setup running python command "method" 2009-05-12 18:32:37,221 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_mv.ref','a_mv.btm',... 'ADCP MV0907 step size 1 ', 1); 2009-05-12 18:32:37,337 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:37,338 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:37,338 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/nav 2009-05-12 18:32:37,338 DEBUG quick_setup running python command "method" 2009-05-12 18:32:37,338 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* the whole time range */ 2009-05-12 18:32:37,338 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:37,373 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-05-12 18:32:37,374 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:37,374 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/watertrk 2009-05-12 18:32:37,374 DEBUG quick_setup running python command "method" 2009-05-12 18:32:37,374 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mv.gps reference_file: ../../nav/a_mv.nav output_file: a_mv_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-05-12 18:32:37,374 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-05-12 18:32:37,387 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:37,388 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/cal/watertrk 2009-05-12 18:32:37,388 DEBUG quick_setup running python command "method" 2009-05-12 18:32:37,388 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_mv_7.cal', 'ADCP MV0907 7ens') 2009-05-12 18:32:37,388 DEBUG call_matlab --> clear all 2009-05-12 18:32:37,393 DEBUG call_matlab <-- >> 2009-05-12 18:32:37,393 DEBUG call_matlab --> close all 2009-05-12 18:32:37,431 DEBUG call_matlab <-- >> 2009-05-12 18:32:37,432 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75nb/cal/watertrk 2009-05-12 18:32:37,434 DEBUG call_matlab <-- >> 2009-05-12 18:32:37,434 DEBUG call_matlab --> calladcpcal_tmp 2009-05-12 18:32:38,216 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [31x11 double] igood: [30x1 double] >> 2009-05-12 18:32:38,216 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-05-12 18:32:38,216 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:38,216 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/vector 2009-05-12 18:32:38,217 DEBUG quick_setup running python command "method" 2009-05-12 18:32:38,217 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:32:38,221 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:38,222 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/vector 2009-05-12 18:32:38,222 DEBUG quick_setup running python command "method" 2009-05-12 18:32:38,222 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-05-12 18:32:38,268 DEBUG quick_asect done making vector matfiles 2009-05-12 18:32:38,269 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:38,269 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/contour 2009-05-12 18:32:38,269 DEBUG quick_setup running python command "method" 2009-05-12 18:32:38,269 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:32:38,275 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:38,275 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/contour 2009-05-12 18:32:38,276 DEBUG quick_setup running python command "method" 2009-05-12 18:32:38,276 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-05-12 18:32:38,333 DEBUG quick_setup starting in /home/data/MV0907/proc/os75nb 2009-05-12 18:32:38,333 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75nb/contour 2009-05-12 18:32:38,334 DEBUG quick_setup about to run getmat -rs -f allbins_ ../adcpdb/a_mv 2009-05-12 18:32:38,453 DEBUG quick_asect done running getmat with "allbins" 2009-05-12 18:32:38,454 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2009-05-12 18:32:38,454 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2009-05-12 18:32:38,454 DEBUG root matfile is contour/contour_uv.mat 2009-05-12 18:32:38,456 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2009-05-12 18:32:38,457 DEBUG root matfile is vector/vector_uv.mat 2009-05-12 18:32:38,457 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2009-05-12 18:32:38,457 DEBUG root matfile is contour/contour_xy.mat 2009-05-12 18:32:38,457 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2009-05-12 18:32:38,457 DEBUG root matfile is vector/vector_xy.mat 2009-05-12 18:32:38,458 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2009-05-12 18:32:38,458 DEBUG root about to copy file edit/a_mv.tem to /home/adcp/www/data/os75nb_temp.asc 2009-05-12 18:32:38,458 INFO root copying edit/a_mv.tem to /home/adcp/www/data/os75nb_temp.asc 2009-05-12 18:32:38,458 INFO root Ending quick_adcp.py 2009-05-12 18:32:38,514 DEBUG quick_setup killed matlab engine